Delft3d-FLOW Quick Start Manual Michael Kliphuis 8 dec 2017 1. Introduction Delft3D-FLOW is a multi-dimensional (2D or 3D) hydrodynamic (and transport) simulation program which calculates non-steady flow and transport phenomena that result from tidal and meteorological forcing on a rectilinear or a curvilinear, boundary fitted grid. Chapter two describes how to start a parallel Delft3d-FLOW run on a cluster like Cartesius and chapter three how to plot the results of a run with an application called QUICKPLOT. 2. Run Delft3d-FLOW This chapter describes how to quickly setup and start a Delft3d-FLOW run. As an example we take a low resolution (approximately 200m) run that simulates the Lake Garda in Italy on the ‘dijkbio’ login on Cartesius. 2.1 Log in to Cartesius ssh –X [email protected]with password: ****** you know it, I better not mention it because this document will be on my website All the needed files to start a run are on Cartesius* on the ‘dijkbio’ login in the directory: /projects/0/samoc/henk/delft3d/garda/F2004/200m/scripts/run_template If you want to start a new run to test parameters, e.g. let’s call it pm_run1 then type: cd /projects/0/samoc/henk/delft3d/garda/F2004/200m/scripts cp –r run_template pm_run1 cd pm_run1 then in run.sh change the line cd /projects/0/samoc/henk/delft3d/garda/F2004/200m/scripts/run_template * If you want to run it on another login on Cartesius or on another machine please contact Michael Kliphuis ([email protected])
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2.1 LogintoCartesiusssh–[email protected]:******youknowit,IbetternotmentionitbecausethisdocumentwillbeonmywebsiteAlltheneededfilestostartarunareonCartesius*onthe‘dijkbio’logininthedirectory:/projects/0/samoc/henk/delft3d/garda/F2004/200m/scripts/run_template Ifyouwanttostartanewruntotestparameters,e.g.let’scallitpm_run1thentype: cd /projects/0/samoc/henk/delft3d/garda/F2004/200m/scripts cp –r run_template pm_run1 cd pm_run1 theninrun.shchangetheline cd /projects/0/samoc/henk/delft3d/garda/F2004/200m/scripts/run_template
into cd /projects/0/samoc/henk/delft3d/garda/F2004/200m/scripts/pm_run1 Ifneededchangeanyoftheparametersinthefileg2004.mdfcheckthemeaningoftheparametersviathemanualhttps://oss.deltares.nl/documents/183920/185723/Delft3D-FLOW_User_Manual.pdfAfterthatyouarereadytostarttherun.
2.2 Startrun(inthebatchqueue)
1. cd /projects/0/samoc/henk/delft3d/garda/F2004/200m/scripts/pm_run1