GLOBAL BIODIVERSITY INFORMATION FACILITY TDWG 2009, Montpelier, TDWG 2009, Montpelier, November 12, November 12, 2009 2009 Dag Endresen (NordGen) Dag Endresen (NordGen) & Samy Gaiji Samy Gaiji (GBIF) (GBIF) WWW.GBIF.ORG DarwinCore Germplasm Extension DarwinCore Germplasm Extension and deployment in the GBIF and deployment in the GBIF infrastructure infrastructure
30
Embed
Darwin Core germplasm extension v 0.1, at TDWG 2009 conference (12 Nov 2009)
Working session of the Darwin Core Germplasm extension and the GBIF IPT extension during the TDWG 2009 conference. Darwin Core (DwC) is a set of general terms applicable to most biodiversity datasets. The Germplasm extension extends the generic terms to include terms required for germplasm biodiversity datasets.
Endresen, D., S. Gaiji, and T. Robertson (2009). Darwin Core Germplasm Extension and deployment in the GBIF infrastructure. In: Weitzman, A.L. (ed.) Proceedings of TDWG 2009. 9-13 November 2009. Montpelier, France. Peer review. http://www.tdwg.org/proceedings/article/view/464
This document is posted to help you gain knowledge. Please leave a comment to let me know what you think about it! Share it to your friends and learn new things together.
Modelled starting from the Multi-Crop Passport standard (MCPD, 2001)
Includes the new terms for crop trait experiments developed as part of the European EPGRIS3 project.
Includes a few additional terms for new international crop treaty regulations.
DwC Germplasm (1)DwC Germplasm (1)
DwC Germplasm (2)DwC Germplasm (2)
DwC Germplasm (3)DwC Germplasm (3)
DwC Germplasm (4)DwC Germplasm (4)
DwC Germplasm (5)DwC Germplasm (5)
DwC Germplasm (6)DwC Germplasm (6)
GermplasmDistributionPerhaps add new terms to facilitate the reporting of germplasm distribution for the ITPGRFA (International Treaty for Genetic Resources for Food and Agriculture)
GermplasmManagementThe Millennium Seed Bank (Kew) has contributed feedback to the DwC-G modeling and proposed to include a number of seed management descriptors.
Mapping of DwC-G terms to the MCPD descriptors (continued)
Mapping of DwC-G terms to the MCPD descriptors (continued)
MCPD -> ABCD 2.06 (2004)MCPD -> ABCD 2.06 (2004)
National Inventory Code
Institute Code
Accession Number
Collecting Number
Collecting Institute Code
Genus
Species
Species Authority
„Subtaxa“
„Subtaxa“ Authority
Common Crop NameAccession NameAcquisition Date
Country of OriginLocation of Collection SiteLatitude of CSLongitude of CSElevation of CSCollecting Date of SampleBreeding Institute CodeBiological Status of
AccessionAncestral DataCollecting/Acquisition
Source
Donor Institute CodeDonor Accession NumberOther Identification (Number)
associated with the accession
Location of Safety DuplicatesType of Germplasm StorageRemarksDecoded Collecting InstituteDecoded Breeding InstituteDecoded Donor InstituteDecoded Safety Duplication
LocationAccession URL
Descriptors marked red did not match the earlier versions of ABCD ABCD was extended by a PGR section [W. Berendsohn, H. Knüpffer]
The GBIF IPT service has a graphical interface to the datasets.
Including a map, pie charts, or the right side context menu (taxonomy and geography).
The IPT user interface includes the extensions
The IPT user interface includes the extensions
XML interface includes the extensions
XML interface includes the extensions
GBIF IPT implements the Darwin Core Standard; and provides an interface to easily build extensions to the core Darwin Core terms.
The draft germplasm extension is one example of how-to extend the Darwin Core terms for the GBIF IPT.
Using GBIF technology (and contributing to its development), the PGR community can easily establish specific PGR networks without duplicating GBIF's work.
The compatibility of data standards between PGR and biodiversity collections made it possible to integrate the worldwide germplasm collections into the biodiversity community (GBIF, TDWG).
GBIF PGR Network 2GBIF PGR Network 2
http://data.gbif.org/datasets/network/2
• GBIF, Global Biodiversity Information Facility http://www.gbif.org
• TDWG, Biodiversity Information Standards http://www.tdwg.org
• BioCASE, The Biological Collection Access Service for Europe. http://www.biocase.org
• Bioversity International http://www.bioversityinternational.org
Things can happen in a band, or any type of collaboration, that would not otherwise happen. (Jim Coleman, Musician)