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CURRICULUM VITAE David B. Keator, Ph.D.
PERSONAL INFORMATION Associate Professional Researcher
Department of Psychiatry & Human Behavior Operations Director
Neuroscience Imaging Center School of Medicine Chief Information
Officer BrainCircuits Lab Department of Neurology University of
California, Irvine Neuroscience Imaging Center Irvine Hall Room 163
Irvine, CA 92697-3960 Tel: (949) 824-7870 Fax: (949) 824-2230
E-mail [email protected] URL
http://faculty.sites.uci.edu/davidkeator/ EDUCATION Graduate
2008-2015 Ph.D. Computer Science – Department of Computer Science,
University of California, Irvine Field of Study: Machine
Learning
Dissertation: Probabilistic Models for Brain Image Collection,
Classification, and Functional Connectivity. Advisor: Alexander
Ihler, Ph.D.
1997-01 M.S. Computer Science – Department of Electrical and
Computer Engineering, California State University, Long Beach Field
of Study: Software Engineering Undergraduate 1990-94 B.S.
Biological Science – Department of Biological
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Sciences, University of California, Irvine Language(s) English
ACADEMIC APPOINTMENTS 2016 - Present Associate Professional
Researcher Department of Psychiatry and Human Behavior Operations
Director - Neuroscience Imaging Center School of Medicine
University of California, Irvine 2002 – 2016 Specialist, University
of California, Irvine Director of Scientific Computing Operations
Director - Neuroscience Imaging Center Department of Psychiatry and
Human Behavior NON-ACADEMIC APPOINTMENTS 1997 – Present
President/Founder, Brain Imaging Legal Services 1996 – 2002
Programmer/Analyst II, University of California, Irvine
Department of Psychiatry and Human Behavior 1994 – 1996 Staff
Research Asst. I, University of California, Irvine Department of
Psychiatry and Human Behavior 1990 – 1994 EEG Technician,
University of California, Irvine
Department of Psychiatry and Human Behavior AWARDS AND
HONORS
• Graduate Dean’s List Award – CSULB Department of Engineering
and Computer Science
• Phi Kappa Phi National Honor Society • Ying Jow Pai Kung Fu –
Black sash, Instructor • National Eagle Scout Association •
Assistant Cubmaster, Pack 688, Rancho Santa Margarita, CA.
(2012-2013) • Assistant Scoutmaster, Troop 727, Rancho Santa
Margarita, CA. (2014-present)
PROFESSIONAL ACTIVITY
• INCF Neuroinformatics channel Advisory Board • Review Editor -
Frontiers in Brain Imaging Methods • Reviewer – IEEE Transactions
on Computational Biology and Bioinformatics • Reviewer – IEEE
Transactions on Information Technology in Biomedicine • Reviewer –
IEEE Transactions on Medical Imaging • Reviewer – IEEE
Visualization • Reviewer – Computer Methods and Programs in
Biomedicine • Reviewer – NeuroImage
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• Reviewer – PLoS ONE MEMBERSHIP IN PROFESSIONAL
ORGANIZATIONS
• IEEE • IEEE Computer Society
INVITED PRESENTATIONS
• “Using the neuroimaging data model (NIDM) for databasing and
querying complex data”, Neuroscience 2016, The 39th Annual Meeting
of the Japan Neuroscience Society, Yokohama Japan, July 20-22,
2016.
• “Standardizing Metadata in Brain Imaging”, NeuroInformatics
2015, Cairnes, Australia, August 20-22, 2015.
• Keynote: “Sharing Semantically Meaningful Neuroimaging
Provenance and
Derived Data using the Neuroimaging Data Model (NIDM)”, Advances
in Neuroinformatics, Tokyo, Japan, September 25-26, 2014.
• “Design and application of a biologically inspired feature
model, a
Bayesian mixture of experts model, and a topic model to
functional brain imaging.”, Neural Information Processing (NIPS)
Workshop on Machine Learning and Interpretation in Neuroimaging,
Sierra Nevada, Spain, December 16-17, 2011.
• “Function Biomedical Informatics Research Network”,
GlobusWorld, Chicago,
IL, March 2-4, 2010.
• “Alzheimer’s Disease Classification using Positron Emission
Tomography (PET) and Feature Selection Inspired by Visual Cortex”,
UC Irvine Information and Computer Science eHealth Workshop,
Irvine, CA. 2009.
• “Functional Biomedical Informatics Research Network (FBIRN)”,
UK E-Science
Workshop, Edinburgh Scotland, October 2-3, 2006.
TEACHING July 23-25, 2016 INCF Japan Node / NIDM Hackathon NIDM
Workshop August 17-18, 2015 Neuroinformatics 2015 NIDM Workshop
Cairnes, Australia Spring 2012 INF 171/ Public Health 119 Medical
Informatics University of California, Irvine Guest Lecturer:
Medical Imaging Informatics
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Winter 2011 INF 171 Medical Informatics University of
California, Irvine Guest Lecturer: Introduction to Medical Imaging
Winter 2009 INF 171 Medical Informatics University of California,
Irvine Guest Lecturer: Introduction to Medical Imaging RESEARCH
CURRENT RESEARCH 1P41EB019936-01A1(PI: Kennedy) 2016-2021
WA00433491 (Potkin/Keator) Center for Reproducible Neuroimaging
Computation (CRNC) The Center for Reproducible Neuroimaging
Computation (CRNC), a Biomedical Technology Research Center, is
dedicated to establishing and promoting reproducible neuroimaging
research through the use of semantic web and software container
technologies. 1P50MH096889-01A1 (PI: Baram) 2013 –2018 Fragmented
Early Life Environmental and Emotional / Cognitive Vulnerabilities
Environmental and Biological Variation Role: Informatics Core
Director The major goals of this project are to probe the effects
of fragmented early life experience on neuronal network structure
and function using magnetic resonance brain imaging (MRI) of rats
and humans. Responsible for the development of a center-wide,
cross-species informatics platform. 1U01AGO51412-01 (PI: Lott)
2015-2020 Columbia Univ/NIH Biomarkers of Alzheimer's Disease in
Down Syndrome Role: Data Analysis Goals: The overall aim of this
project is to identify biomarkers associated with the progression
of Alzheimer’s disease (AD) from its prodromal stages to frank
dementia in adults with Down syndrome (DS), responding to
RFA-AG-15-011. Adults with DS are at high risk for AD. However
there is a wide range of age at onset and a substantial proportion
of adults with DS maintain their abilities even at older ages
associated with extensive neuropathology. The objective of this
project is to identify the factors contributing to these individual
differences through a longitudinal analysis of biomarkers of
dementia status. 1U01MH097435-01A1 (PI: Potkin) 2013-2016 UCI Award
: 60033871 (POTKIN) $335,942 Northwestern University (Prime
NIH)
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SchizConnect: Large-Scale Schizophrenia Neuroimaging Data
Mediation and Federation Role: Co-Investigator The major goals are
to develop SchizConnect Mediator, an algorithmic approach to
querying and integrating information from disparate, heterogeneous
databases, to enable data retrieval easily and precisely. To
establish and validate a web-based portal, SchizConnect, which will
provide a uniform, structured, and user-friendly interface to query
and download data provided by the Mediator. Responsible for UCI
contribution to the SchizConnect resource and integration of NIDM
semantic neuroimaging metadata format. PENDING RESEARCH – Under
Review 1 R24 ES028512-01 (PI Keator / Turner) 2017-2020 NIH
$1,190,459 Document, Link, and Reuse: Standardizing Experiment
Metadata in Neuroscience Role: Principle Investigator Reuse of
existing neuroscience data relies, in part, on our ability to
understand the experimental design and study data. Our vision is to
build on existing resources to create annotation and discovery
tools that are based on a metadata standard expressive enough to
provide unambiguous descriptions of the experimental methods and
metadata. In this proposal, we develop the Experiment Data Model
(EDM), a metadata format leveraging techniques from the semantic
web, capable of precisely describing information about the design
and intent of an experiment, experimental subject characteristics,
and the acquired data. The deliverables in this proposal will
create an information architecture of a "Data Commons" to achieve
Findable, Accessible, Interoperable, and Reusable metadata. The
Aims consist of three interleaved components: (1) Develop EDM
conceptual metadata models through community engagement and
multi-species partner projects in schizophrenia, adolescent
cognitive development, and post-traumatic stress disorder; (2)
Develop use-case driven software tools for EDM document creation
and annotation; (3) Foster adoption through comprehensive training
materials and community workshops for users and developers. Project
Seed Funding 2017-2018 International Neuroinformatics Coordinating
Facility (INCF) $20,000 Integrating NIDM-Experiment and the Brain
Imaging Data Structure Role: Principle Investigator Acceleration of
scientific discovery relies on our ability to effectively use data
often acquired across multiple domains. Typically, subsets of data
collections are shared using lab-specific organizational schemes
with little or no information provided to give the data context
within the broader experimental protocol nor the ability to
efficiently use the data for reproducibility outside of the
originating site. To address these challenges, the INCF supported
two related efforts. The Neuroimaging Data Model (NIDM;
http://nidm.nidash.org/) was developed to provide a linked data
format for describing all aspects of the data lifecycle, from raw
data through analyses and provenance. The NIDM-Experiment component
describes the experiment metadata, giving the acquired data context
within the broader project protocol. The Brain Imaging Data
Structure
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(BIDs; http://bids.neuroimaging.io/) was designed to provide
software developers and the neuroimaging community with a standard
for organizing the data collected in an imaging experiment to more
easily automate analysis workflows. In this project we develop
converters to both export imaging datasets described in
NIDM-Experiment documents as BIDs-formatted data sets, providing
access to BIDs supported workflows, and import of BIDs data sets to
NIDM-Experiment documents, facilitating sharing and linking of BIDs
data sets outside of the originating laboratory and contextualizing
BIDs data sets with respect to the experiment protocols. COMPLETED
RESEARCH 1U01NS087825-01 (PI: Potkin) 2014-2016 NIH/NINDS $250,000
CSF-enhanced-aggregation Biomarker for Huntington’s Disease Role:
Neuroimaging Analysis Huntington’s disease is a progressive and
fatal illness with no known treatment. This proposal refines a CSF
biomarker measure to diagnose and monitor the progression of HD.
The availability of such a biomarker is crucial to the efficient
development of novel treatments for HD. Responsible for UCI
structural neuroimaging data analysis. U24 RR025736-01 (PI
Kesselman) 2008 –2013 UCI Award : 150266 (PI Potkin) $486,277 Univ
of Southern CA (Prime NCRR/NIH) Bio-Informatics Research Network
Coordinating Center (BIRN-CC) Role: Co-Investigator The purpose of
this grant is to maintain, support, and enhance the software tools
developed under the BIRN testbed grants (Function BIRN led by Dr.
Steven Potkin at the University of California, Irvine (U24RR21992,
end date November 30, 2010); Morphometry BIRN led by Dr. Bruce
Rosen at Massachusetts General Hospital (U24RR21382, end date May
31, 2009), and Mouse BIRN led by Dr. Arthur Toga at the University
of California, Los Angeles. (U24RR21760, end date April 30, 2010))
for the analysis of neuroscience and neuroimaging data and extend
those tools to support similar workflows for domains outside
neuroscience. Responsible for UCI’s contribution of FBIRN tools and
data. U24 RR026057 (PI Rosen) UCI Award : 215287 (PI Potkin)
2009-2013 MA General Hospital $298,589 Role: Co-Investigator
Collaborative Tools Support Network (CTSN) The major goals of this
project are to provide expertise in multi-center imaging data
collection, management, and analysis; and to facilitate the
transfer of multi-center imaging tools and methods to the
Collaborate Tools Support Network. Responsible for
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outreach to investigators interested in using FBIRN tools and
data within the collaborative tools network. 5 U24 RR21992 (PI
Potkin) 2009 –2013 NCRR/NIH $20,651,999 Function BIRN Role:
Co-Investigator, Neuroinformatics Chair The BIRN is an NCRR
initiate aimed at creating a testbed to address biomedical
researchers’ need to access and analyze data at a variety of levels
of aggregation located at diverse sites throughout the country. The
BIRN testbed will bring together hardware and develop software
necessary for a scalable network of databases and computational
resources. The FIRST BIRN is dedicated to the development of
multi-site functional imaging studies and databases, applied
initially to the problem of schizophrenia. Chair of the
neuroinformatics working group of FBIRN. Responsible for multi-site
tools and data sharing methods. HHSN271200800006C (Wigal) 2010
–2012 PHS-NIH $1,299,836 Role: UCI Informatics Director The MTA
study neuroimaging add on study plans to address the underlying
neurophysiological mechanisms that have been theorized to place
individuals with a diagnosis of ADHD at increased risk for a range
of Substance Usage Disorder (SUDs). Responsible for publically
available MTA data set. Alzheimer's Disease Neuroimaging Initiative
(PI Weiner) 2005-2009 UCI Award: $1,110,975 (PI Potkin) UCSD- NIH
Role: PET Acquisition and Data Analysis Longitudinal identification
of brain imaging measures (sMRI, FDG PET, amyloid PET) of AD and
MCI (mild cognitive impairment). PUBLICATIONS Abstracts and
Conference Proceedings
1. Potkin, S. G., Wu J., Fallon F., Anand R., Hartman R., Bera
R., Carreon D., Telford J., Plon L., Keator D.B. "S-28-6 Functional
neuroimaging to evaluate atypical antipsychotic compounds: an FDG
PET study of SDZ MAR 327." European Neuropsychopharmacology 5, no.
3 (1995): 241-242.
2. Wu, J. C., Klein E.A., Bell K. M., Widmark C. B., Keator D.B.
"Reduced limbic FDG metabolism in cocaine addicts is
left-lateralized and normalizes after one month." Neuroimage 3, no.
3 (1996): S523.
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3. Bell K. M., Klein E.A., Wu J.C., Widmark C.B., Najafi A.,
Keator D.B. "360.-A PET study of PET FDOPA uptake in abstaining
cocaine addicts." Biological Psychiatry 39, no. 7 (1996): 606.
4. Potkin, S., Wu J., Anand R., Bera R., Carreon D., Hartman R.,
Keator D.B.. "S-2-3-Neuroimaging to evaluate atypical antipsychotic
compounds: An FDG pet study of SDZ MAR 327." European
Neuropsychopharmacology (1996):6, 17-18.
5. Potkin SG, Kennedy J, Badri F, Jin Y, Masellis M, Gulasekaram
B, Costa J, Keator DB, Telford J, Wu JC, Najafi A: “D1 Alleles
Predict Clinical Response to Clozapine and Corresponding Brain
Metabolism: A Genetic PET Scan Study,” International Congress on
Schizophrenia Research, 1997.
6. Potkin SG, Jin Y, Bunney B, Gulasekaram B, Costa J, Keator
DB, Telford J, Wu JC, Najafi A, Bunney WE Jr.: “Clinical and Brain
Imaging Effects of Adjunctive High Dose Glycine with Clozapine in
Schizophrenia,” International Congress on Schizophrenia Research,
1997.
7. Potkin SG, Arnand R, Messina J, Hartman R, Keator D, Wu JC,
Maguire G, Fleming K, Dockstader T: FDG PET: A Sensitive and
Quantitative Tool To Measure Progression of Alzheimer’s Disease And
Brain Metabolic Effects of Rivastigmine Tartrate –poster presented
at the American Academy of Neurology, Minneapolis, MN, April 30,
1998.
8. Potkin SG, Bera R, Keator D, Fleming K, Alva G, Carreon D,
Kranz L:“Distinguishing Predominantly Negative Symptom
Schizophrenia with FDG PET.” Poster presented at the International
Congress on Schizophrenia Research, Santa Fe, NM, April 17-21,
1999.
9. Potkin SG, Basile VS, Badri F, Keator D, Wu JC, Alva G, Doo
M, Bunney WE Jr., Kennedy JL: “D1 Receptor Alleles Predict PET
Metabolic Correlates of Clinical Response to Clozapine.” Abstract
published in The International Journal of Neuropsychopharmacology,
3(Suppl 1):S6, 2000.
10. Potkin SG, Shipley J, Bera RB, Carreon D, Fallon J, Alva G,
Keator D. “Clinical and PET Effects of M100907, A Selective 5HT-2A
Receptor Antagonist”, abstract published in Schizophrenia Research,
49(1-2 Supplement):242.
11. Potkin, SG, Anand, R, Alva, G, Fleming, K, Keator, D,
Carreon, D, Messina J, Wu, JC, Hartman, R, Fallon, JH: FDG PET and
Clinical Effects in Placebo and Rivastigmine Treated Subjects with
Alzheimer’s Disease, International Congress of Geriatric
Psychiatry, December 14-15, 2001, Waikola, Hawaii.
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12. Keator, D: Medical Image Normalization and Surface
Reconstruction Techniques, Youth Leadership Forum, July 10 &
24, 2002, University of California, Irvine.
13. Potkin SG, Keator DB, Mbgori J, Fallon JH, UC Irvine TTURC:
“Brain Metabolic Effects of Nicotine Patch in High and Low
Hostility Subjects,” Society for Research on Nicotine &
Tobacco, 2003.
14. Fallon JH, Keator DB, Mbgori J, Potkin SG, UC Irvine TTURC:
“Gender and Ethnic Differences in Brain Metabolism Following
Nicotine Patch,” Society for Research on Nicotine & Tobacco,
2003.
15. Turner, J.A.; Potkin, S.G.; Brown, G.G.; Glover, G.H.;
Greve, D.; Keator, D.B.; McCarthy, G.; Grethe, J.S.; Wible, C.G.;
Lim, K.; Toga, A.W.; Andreasen, N.C.; O’Leary, D.; FIRST BIRN.
Biomedical Informatics Research Network: Integrating Multi-Site
Human Functional Imaging Acquisition and Analysis. Poster presented
at the NIH Biomedical Information Science and Technology Initiative
Consortium (BISTIC), 2003.
16. Potkin SG; Turner JA; Brown GG; Glover GH; Heckers S; Keator
DB; Grethe JS. Biomedical Informatics Research Network: Functional
Imaging Research in Schizophrenia Test Bed. Poster presented at
Neuroscience, 2003.
17. Kemp, A.S., Aulakh, J., Jin, Y., Huerta, S.T., Keator, D.B.,
O’Halloran, J.P., Potkin, S.G.. Fronto-Parietal EEG Coherence
Correlates with Semantic Fluency and Cortical Glucose Metabolism in
Patients with Alzheimer’s Disease. Society of Biological Psychiatry
Annual Meeting, San Francisco, May 15-17, 2003.
18. Turner, J.A.; Potkin, S.G.; Glover, G.; McCarthy, G.;
Gollub, R.L.; Brown, G.; Dale, A.; Grethe, J.S.; Friedman, L.;
Keator, D.B.; FIRST BIRN. Biomedical Informatics Research Network:
Functional Imaging Research in Schizophrenia Testbed. Abstract and
poster at Organization of Human Brain Mapping, 2004.
19. Ozyurt, B.I.; Wei, D.; Keator, D.B.; Potkin, S.G.; Brown,
G.; Grethe, J.; FIRST BIRN. A General and Extensible Database
System for the Storage,
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Retrieval and Maintenance of Human Brain Imaging and Clinical
Data. Abstract and poster presentation at Organization of Human
Brain Mapping, 2004.
20. Ozyurt, B.I.; Wei, D.; Keator, D.B.; Potkin, S.G.; Brown,
G.; Grethe, J.; Web-Accessible Clinical Data Management within an
Extensible Neuroimaging Database. Abstract and poster presentation
at Society for Neuroscience, 2004.
21. Keator, D.B.; Gadde, S.; Grethe, J.S.; Taylor, D.V.; Potkin,
S.G.; FIRST BIRN. A General XML Schema and Associated SPM Toolbox
for Storage and Retrieval of Neuro-Imaging Results and Anatomical
Labels. Abstract and poster presentation at Organization of Human
Brain Mapping, 2004.
22. Fleming, K; Keator, D.B.; Fallon, J; Mbogori, J; Potkin, S.
High Impulsivity Non-Smokers have a Robust Brain Metabolic Response
to Nicotine. Abstract and poster presentation at American College
of Neuropsychopharmacology (ACNP) meeting, 2004.
23. Keator, D.B.; Gadde, S.; Grethe, J.S.; Taylor, D.V.; Potkin,
S.G.; FIRST BIRN. A General XML Schema and Associated SPM Toolbox
for Storage and Retrieval of Neuro-Imaging Results and Anatomical
Labels. Abstract and poster presentation at Human Brain Project
Neuro-Informatics meeting, 2004.
24. Keator, D.B.; Gadde, S.; Grethe, J.S.; FIRST BIRN. XML
Schema and Methods for a Common Image Format. Presentation at the
Neuroimaging Informatics Technology Initiative (NIfTI) Data Format
Working Group Meeting, NIH 2004.
25. Ozyurt, I. B., Wei D., Keator D.B., Potkin S.G., Brown G.G.,
Grethe J., B. I. R. N. Morphometry, and Coordinating Center BIRN.
"A user-friendly, web-accessible system for the management,
discovery, retrieval, and analysis of clinical and brain imaging
data." Human Brain Project Neuro-Informatics meeting. 2004.
26. Potkin, S. G., Alva G., McDonald S., Gergel I., Keator D.B.,
Fallon J.H.. "Memantine monotherapy increases brain metabolism and
effectively treats mild to moderate Alzheimer's disease." Annals Of
Neurology, 2004; vol. 56, pp. S48-S49.
27. Potkin, S.G., Brown g.G., Glover G. H., McCarthy G., Lim K.
O., Gollub R., Rosen, Toga A., Kikinis R., Dale A., Lauriello J.,
O'Leary D., Lieberman J., Belger A., Greve D., Friedman L., Cannon
T., Fallon J., Keator D.B., Grethe J.S., Turner J.A.. "Functional
biomedical informatics research network: Multi-center fMRI
methods." Neuropsychopharmacology, vol. 29, pp. S221-S221.
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28. V. Sossi, H. W. A. M. de Jong, W. C. Barker, P. Bloomfield,
Z. Burbar, M.-L. Camborde, R. E. Carson, C. Comtat, L. A. Eriksson,
S. Houle, D. Keator, C. Knöß, R. Krais, A. A. Lammertsma, A.
Rahmim, M. Sibomana, M. Teräs, C. J. Thompson1, R. Trébossen, J.
Votaw, K. Wienhard, D. F. Wong. The second generation HRRT – a
multi-centre scanner performance investigation. Abstract and poster
presentation at IEEE Medical Imaging Conference, 2005.
29. B.I. Ozyurt; D. Wei; D.B. Keator; J.H. Bockholt; K.R. Pease;
H.E. Schmidt; FIRST BIRN; Morphometry BIRN; BIRN-CC; J.S. Grethe.
Scientific Data Management With an Extensible Neuroscience
Database. Abstract and poster presentation at Society for
Neuroscience, 2005.
30. Mukherjee J; Keator D; Collins D; Jackson H; Vivatpattanakul
B; Pichika R; Christian B; Fallon J; Wu J. High Resolution
HRRT-18F-Fallypride PET of the Human Brain. Abstract and poster
(#652435) Radiological Society of North American Annual Meeting,
2005.
31. Potkin S; Turner J; Brown G; Stern H; Glover G; McCarthy G;
Greve D; Friedman L; Keator D; Grethe J; Fallon J; Lim K; Gollub R;
Rosen B; Toga A; Kikinis R; Lauriello J; O’Leary D; Belger A;
FBIRN. Multicenter fMRI Methods and Design: Function BIRN. Abstract
and poster (100.18/PP35) presentation at Society for Neuroscience,
2006.
32. Keator D; Ozyurt BI; Wei D; Gadde S; Potkin SG; Brown G;
MBIRN; FBIRN; Grethe J. A General and Extensible Multi-Site
Database and XML based Informatics System for the Storage,
Retrieval, Transport, and Maintenance of Human Brain Imaging and
Clinical Data. Abstract and poster (253 TH-AM) presentation at
Organization of Human Brain Mapping, 2006.
33. Keator D; Grethe J; Ozyurt B; Gadde S; Wei D; Turner J;
Potkin S; Brown G; McCarthy G; Glover G; Stern H; Lauriello J;
Friedman L; Belger A; Lim K; Pieper S; Greve D; FBIRN. Function
Biomedical Imformatics Research Network (FBIRN) Open Source FMRI
Informatics, Calibration, and Data Tools Repository. Abstract and
poster (252 TH-PM) presentation at Organization of Human Brain
Mapping, 2006.
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34. Turner, J.; Potkin, S. G.; Brown, G. G.; Stern, H. S;
Glover, G. H.; McCarthy, G.; Greve, D. N.; Friedman, L.; Keator,
D.; Grethe, J. S. Fallon, J. H.; Lim, K. O.; Gollub, R. L.; Rosen,
B. R.; Toga, A. W.; Kikinis, R.; Pieper, S.; Lauriello, J.;
O'Leary, D. S.; Belger, A.; Function BIRN. Multi-center fMRI
methods and design: Function BIRN. Annual Meeting of the Society
for Neuroscience, Atlanta, GA. 2006.
35. Ford, J; Mathalon, D; Roach, B; Turner, J; Potkin, S; Brown,
G; Wible, C; McCarthy, G; Greve, D; Mueller, B; Keator, D; Lim, K;
O’Leary, D; Belger, A; Voyvodic, J; Glover, G; Lauriello, J; FBIRN.
(2007). Hallucinations and deviant tones compete for primary
auditory cortical resources: Multi-site fMRI study of
schizophrenia. Annual Meeting of the Society for Neuroscience, San
Diego, CA. 2007.
36. Lee K.; Hong I; Potkin S.; Burbar Z.; Keator D. High
Resolution PET Listmode Motion Correction Using 3D Motion Data.
Abstract and poster presentation at Joint Molecular Imaging
Conference, 2007.
37. Lee, K.; Potkin, S.; Keator, D.; Hong, I. Fast 3-D Motion
Correction using the Characteristics of Motion in Rigid Body.
Abastract and poster presentation at IEEE Medical Imaging
Conference, Dresden, Germany, 2008 .
38. Potkin, S., Turner, J., Fallon, J., Lakatos, A., Keator, D.,
Guffanti, G., Macciardi, F., FBIRN. Gene Discovery Through Imaging
Genetics: Identification of Two Novel Genes Associated with
Schizophrenia. Abstract and poster presentation at International
Conference on Schizophrenia Research, 2009.
39. Abe, S., Preda, A., Turner, J., Keator, D., Potkin, S.,
FBIRN. DTI Co-registration Method Comparison Based on DTI
Tractography Analysis in the Human Brain. Abstract and poster
presentation at Organization of Human Brain Mapping, San Francisco,
CA., 2009.
40. Potkin, S., Keator D., Mukherjee J., Preda A., Highum D.,
Gage A., Xie J., Ghahramani P., Laszlovsky I. "P. 1. e. 028
Dopamine D3 and D2 receptor occupancy of cariprazine in
schizophrenic patients." European Neuropsychopharmacology 2009; 19:
S316.
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41. Mathalon, Daniel H., Kasper W. Jorgensen, Brian J. Roach,
Vince D. Calhoun, Michele T. Diaz, Gregory G. Brown, Randy
Notestine Amanda Bischoff-Grethe, Doug Greve, Gregory McCarthy,
Aysenil Belger, Jessica A Turner, Steven G Potkin, Cindy G Wible,
Bryon A Mueller, John Lauriello, Gary H Glover, Kelvin O Lim,
Daniel S O'Leary, Adian Preda, David Keator, Theo Van Erp, Judith M
Ford. "Failure of Normal Aging-Related Hemispheric Asymmetry
Reduction in Brain Activity During Target Detection in
Schizophrenia." Biological Psychiatry, 2010; vol. 67, no. 9, pp.
252S-252S.
42. Keator, D.B., Fowlkes, C., Fallon, J., Potkin, S., Ihler, A.
Alzheimer’s Disease Classification using PET and Oriented
Hierarchical Filtering. Abstract and poster presentation at
Organization of Human Brain Mapping, Barcelona, Spain. 2010.
43. Bunney, W., Keator, D., Potkin, S., Fallon, J., Preda, A.,
Mukherjee, J., Nguyen, D., Kesler-West, M., Shah, N. Ziprasidone D2
Receptor Occupancy at Doses of 120 to 240mg/day Measured with
18F-Fallypride PET Support Once-A-Day Dosing. ACNP 49th Annual
Meeting, Miami Beach, FL. 2010.
44. Keator D.B., Chen J., Ashish N., Torri F.,Lakatos A., Potkin
S.G., Macciardi F., Wei D. HID-Genetics: A Federated BIRN-enabled
Data Management System for Clinical, Imaging, and Genome-Wide
Association Studies. Abstract and poster presentation at
Neuroinformatics Congress 2011, Boston, MA. 2011.
45. Van Erp T.G.M, Chervenak A., Kesseman C., D’Arcy M., Sobell
J., Keator D.B., Dahm L., Murry J., Law M., Hasso A., Ames J.,
Macciardi F., Potkin S. Infrastructure for Sharing Standardized
Clinical Brain Scans Across Hospitals. Paper and poster
presentation at IEEE International Conference on Bioinformatics and
Biomedicine, Atlanta, GA. 2011.
46. Lakatos, Anita, Jerod Rasmussen, Theo Van Erp, Frijthof
Kruggel, David Keator, and Steven Potkin. "Hippocampal metabolism
deficit in elderly with mild cognitive impairment." Alzheimer's
& Dementia 7, no. 4 (2011): S321-S322.
47. Potkin S.G., Preda A., Nguyen D., Keator D., van Erp T.G.M.,
Kemp A., Fallon F. A brain imaging and neurocognitive study of
subjects treated with aripiprazole. Abstract and poster
presentation at Psych Congress, San Diego, CA 2012.
48. Helmer K., Ghosh S., N ichols N.B., Keator D., Nichols T.,
Turner J. Connecting Brain Imaging Terms to Established Lexicons: a
Precursor for Data
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Sharing and Querying. Abstract and poster presentation at
Neuro-Informatics Congress. Munich, Germany 2012.
49. Ghosh S., Nichols N.B., Gadde S., Steffener J., Keator D.
XCEDE-DM: A neuroimaging extension to the W3C provenance data
model. Abstract and poster presentation at Neuro-Informatics
Congress. Munich, Germany 2012.
50. Potkin S.G., Preda A., Nguyen D., Keator D.B., Keslerwest
M., Van Erp T.G.M., Kemp A., Fallon J. A Brain Imaging and
Neurocognitive Study of Schizophrenic Subjects Treated with
Aripiprazole. Abstract and poster presentation at U.S. Psychiatric
and Mental Health Congress. San Deigo, CA 2012.
51. Nichols N., Stoner R., Keator D.B., Turner J., Helmer K.G.,
Ashish N., Steffener J., Grabowski T.J., Ghosh S. There’s an app
for that: a semantic data provenance framework for reproducible
brain imaging. Abstract and poster presentation at Organization of
Human Brain Mapping, Seattle, WA. 2013.
52. Nichols N., Steffener J., Haselgrove C., Keator D.B., Stoner
R., Poline J.B., Ghosh S. Mapping Neuroimaging Resources into the
NIDASH Data Model for Federated Information Retrieval. Abstract and
poster presentation at Neuroinformatics 2013, Stockholm, Sweden.
2013.
53. K.G. Helmer, S. Ghosh, D. Keator, C. Maumet, B.N. Nichols,
T. Nichols, J.B. Poline, J. Steffener, J. Turner, W. Wong, M.
Martone. The Addition of Neuroimaging Acquisition, Processing and
Analysis Terms to Neurolex. Submitted abstract to Organization of
Human Brain Mapping, Hamburg, Germany. 2014.
54. Helmer, K., S. Ghosh, B. Nichols, D. Keator, T. Nichols, and
J. Turner. "Connecting Brain Imaging Terms to Established Lexicons:
a Precursor for Data Sharing and Querying." In Front. Neuroinform.
Conference Abstract: 5th INCF Congress of Neuroinformatics. doi:
10.3389/conf. fninf, vol. 65. 2014.
55. C. Maumet, T. Nichols, B.N. Nichols, G. Flandin, J. Turner,
K.G. Helmer,J. Steffener, J.B. Poline, S. Ghosh, D. Keator.
Extending NI-DM to share the results and provenance of a
neuroimaging study: an example with SPM. Submitted abstract to
Organization of Human Brain Mapping, Hamburg, Germany. 2014.
56. D. Keator, S. Ghosh, C. Maumet., G. Flandin, B.N. Nichols,
T. Nichols, G. Burns, R. Bruehl, C. Craddock, B. Frederick, K.J.
Gorgolewski,
-
Y.O. Halchenko, M. Hanke, C. Haselgrove, K.G. Helmer, A. Klein,
D. Marcus, M. Milham, F. Michel, R. Poldrack, J. Steffener, Y.
Schwartz, R. Stoner, J. Turner, D. Kennedy, J.B. Poline. Developing
and using the Neuroimaging and Data Sharing Data Model: the NIDASH
Working Group. Abstract and Poster at Organization of Human Brain
Mapping, Hamburg, Germany. 2014.
57. Wang L, Alpert KI, Calhoun V, Keator D, King M, Kogan A,
Landis D, Tallis M, Potkin SG, Turner JA, Ambite JL. SchizConnect:
Large-Scale Schizophrenia Neuroimaging Data Integration and
Sharing. Annual Meeting of the American College of
Neuropsychopharmacology (ACNP); December, 2011; Phoenix, Arizona,
2014.
58. Calhoun, Vince, Dan Mathalon, Theo van Erp, Sarah J. McEwen,
Adrian Preda, Judy Ford, Elena Allen, Steven Potkin, Keator D.B.,
and Eswar Damaraju. "Dynamics Of Intrinsic Connectivity Networks In
Schizophrenia." Schizophrenia Research 153 (2014): S12-S13.
59. Helmer K.G.,Turner J. A., Maumet C., Nichols T., Nichols
B.N., Keator D.B., Ghosh S., Auer T., Poline J.B. Developing
Terminologies for the INCF Neuroimaging Data Model (NIDM). Abstract
and Poster at Organization of Human Brain Mapping, Honolulu,
Hawaii. 2015.
60. Poline J.B., Keator D.B., Gorgolewski K.J., Auer T.,
Craddock C., Flandin G., Ghosh S., Halchenko Y., Hanke M.,
Haselgrove C., Helmer K., Jenkinson M., Klein A., Lanyon L., Marcus
D., Margulies M., Maumet C., Michel F., Nichols B.N., Nichols T.,
Poldrack R., Reynolds R., Saad Z., Schmah T., Steffener J., Turner
J., Van Erp T., Van Horn J.D., Das S., Kennedy D. How to make brain
imaging research efficient and reproducible: building software and
standards. Abstract and Poster at Organization of Human Brain
Mapping, Honolulu, Hawaii. 2015.
61. Nichols B.N., Keator D.B., Ghosh S., Maumet C., Flandin G.,
Nichols T., Gorgolewski K.J., Halchenko Y.O., Hanke M., Haselgrove
C., Helmer K.G., Marcus D., Poldrack R., Turner J., Kennedy D.,
Poline J.B., Pohl K. M. Application of the Neuroimaging Data Model
to Represent and Exchange Primary and Derived Data. Abstract and
Poster at Organization of Human Brain Mapping, Honolulu, Hawaii.
2015.
62. Maumet C., Nichols B.N., Flandin G., Helmer K.G., Auer T.,
Reynolds R., Saad Z., Chen G., Jenkinson M., Webster M., Steffener
J., Gorgolewski K.J., Turner J., Nichols T., Ghosh S., Poline J.B.,
Keator D.B.
-
Standardized reporting of neuroimaging results with NIDM in SPM,
FSL and AFNI. Abstract and Poster at Organization of Human Brain
Mapping, Honolulu, Hawaii. 2015.
63. Keator D.B., Poline J.B., Gorgolewski K.J., Auer T.,
Craddock C., Flandin G., Ghosh S., Halchenko Y., Hanke M.,
Haselgrove C., Helmer K., Jenkinson M., Klein A., Lanyon L., Marcus
D., Margulies M., Maumet C., Michel F., Nichols B.N., Nichols T.,
Poldrack R., Reynolds R., Saad Z., Schmah T., Steffener J., Turner
J., Van Erp T., Van Horn J.D., Das S., Kennedy D. Standardizing
Metadata in Brain Imaging. Abstract and Oral Presentation at
Neuroinformatics Congress, Cairnes Australia, 2015.
64. Keator D.B., Chen J., Nichols N., Fana F., Small S.L. A
Semantic Cross-Species Derived Data Management Application Powered
by NIDM. Abstract and Poster at Organization of Human Brain
Mapping, Geneva, Switzerland. 2016.
65. Keator D.B., Dornan E., Yassa M, Lott I. Baseline [18F]
AV-45 PET Predictors of Dementia Transition in Down Syndrome.
Abstract accepted to The 13th International Conference on
Alzheimer's & Parkinson's, Vienna, Austria 2017.
Journal Articles, Peer Reviewed
66. Potkin S.G.; Wu J.; Fallon F.; Bera R.; Carreon D.; Telford
J.; Plon L.; Keator D.; Anand R.; Hartman R. Functional
neuroimaging to evaluate atypical antipsychotic compounds: an FDG
PET study of SDZ MAR 327. FEBS Letters. 1995 Sep; 5(3);241-242.
67. Cahill L; Haier RJ; Fallon J; Alkire MT; Tang C; Keator D;
Wu J; McGaugh JL. Amygdala activity at encoding correlated with
long-term, free recall of emotional information. Proceedings of the
National Academy of Sciences of the United States of America, 1996;
93(15):8016-21.
68. Wu JC; Maguire G; Riley G; Lee A; Keator D; Tang C; Fallon
J; Najafi A. Increased dopamine activity associated with
stuttering. Neuroreport. 1997 Feb 10;8(3):767-70.
69. Wu JC; Bell K; Najafi A; Widmark C; Keator D; Tang C; Klein
E; Bunney BG; Fallon J; Bunney WE. Decreasing striatal 6-FDOPA
uptake with increasing duration of cocaine withdrawal.
Neuropsychopharmacology, 1997; 17(6):402-9.
-
70. Wu, J; Buchsbaum MS; Gillin JC; Tang C; Cadwell S; Wiegand
M; Najafi A; Hazen K; Keator D; Bunny WE Jr; et al. Prediction of
antidepressant effects of sleep deprivation by metabolic rates in
the ventral anterior cingulated and medial prefrontal cortex.
American Journal of Psychiatry, 1999; 156(8): 1149-58.
71. Wu J; Iacono R; Ayman M; Salmon E; Lin S; Carlson J; Keator
D; Lee A; Najafi A; Fallon J. Correlation of intellectual
impairment in Parkinson’s disease with FDG PET scan. Neuroreport,
2000; 11(10):2139-44.
72. Potkin S; Anand R; Fleming K; Alva G; Keator D; Carreon D;
Messina J; Hartman R; Fallon J. Brain Metabolic and clinical
effects of rivastigmine in Alzheimer’s disease. International
Journal of Neuropsychopharmacology, 2001; 4: 223-230.
73. Potkin S; Alva G; Fleming K; Anand R; Keator D; Carreon D;
Doo M; Jin Y; Wu J; Fallon J. A PET study of Pathophysiology of
Negative Symptoms in Schizophrenia. American Journal of Psychiatry,
2002; 159(2):1-11.
74. Potkin S; Alva G; Keator D; Carreon D; Fleming K; Fallon J.
Brain metabolic effects of Neotrofin in patients with Alzheimer’s
disease. Brain Research, 2002; 951:87-95.
75. Potkin S; Basile V; Jin Y; Masellis M; Badri F; Keator D; Wu
J; Alva G; Carreon D; Bunney W; Fallon J; Kennedy J. D1 receptor
alleles predict PET metabolic correlates clinical response to
clozapine. Molecular Psychiatry, 2003; 8:109-113.
76. Fallon J; Keator D; Mbogori J; Turner J; Potkin S. Hostility
differentiates the brain metabolic effects of nicotine. Cognitive
Brain Research, 2004; 18(2):142-148.
77. Fallon J; Keator D; Mbogori J; Taylor D; Potkin S. Gender: a
major determinant of brain response to nicotine. International
Journal of Neuropsychopharmacology, 2004; 8:1-10.
78. Potkin S.G., McDonald S., Gergel I., Alva G., Keator D.B.,
Fallon J.H.. "P3-102 Memantine monotherapy increases brain
metabolism (PET) and effectively treats mild to moderate
Alzheimer's disease." Neurobiology of Aging, 2004: 25, S384.
-
79. Potkin, S. G., McDonald S., Gergel I., Alva G., Keator D.B.,
and J. H. Fallon. "Memantine monotherapy increases brain metabolism
(PET) and effectively treats mild to moderate Alzheimer's disease."
International Journal of Neuropsycopharmacology, 2004.; vol. 7, pp.
S380-S381.
80. Turner, J., Potkin S.G., Brown G.G., Glover G.H., Fallon
J.H., McCarthy G., Lim K.O., Gollub R.L., Rosen B.R., Toga A.W.,
Kikinis R., Pieper S., Dale A.M., Lauriello J., O'Leary D.S.,
Lieberman J.A., Belger A., Greve D.N., Friedman J., Cannon T.D.,
Keator D.B., Grethe J.S.. "Multi-center fMRI methods and design:
function BIRN." Schizophrenia Bulletin, 2005; vol. 31, no. 2, pp.
437-438.
81. Wu J; Gillin JC; Buchsbaum M; Chen P; Keator D; Khosla N;
Darnall L; Fallon J; Bunney W. Frontal lobe metabolic decreases
with sleep deprivation not total reversed by recovery sleep.
Neuropsychopharmacology, 2006; 31(12):2783-92.
82. Keator, D; Gadde, S; Grethe, J ; Taylor, D; FIRST BIRN;
Potkin, S. A General XML Schema and Associated SPM Toolbox for
Storage and Retrieval of Neuro-Imaging Results and Anatomical
Labels. Neuroinformatics, 2006; 4(2):199-212.
83. Potkin, S. G., Macciardi F., Friedman L., Turner J.A.,
Fallon J., Bunney W., Keator D.B.. "Imaging genetics model for the
study of neuropsychiatric diseases." American Journal Of Medical
Genetics Part B-Neuropsychiatric Genetics, 2006; vol. 141, no. 7,
pp. 687-687.
84. Wu J; Gillin C; Buchsbaum B; Schachat C; Darnall L; Keator
D; Fallon J; Bunney W. Sleep deprivation PET correlations of
Hamilton symptom improvement ratings with changes in relative
glucose metabolism in patients with depression. Journal of
Affective Disorders, 107, no. 1 (2008): 181-186.
85. Keator, D.; Grethe, J.S.; Marcus, D.; Ozyurt, B.; Gadde, S.;
Murphy, S.; Pieper, S.; Greve, D.; Notestine, R.; Bockholt, H.J;
Papadopoulos, P.; Function BIRN; Morphometry BIRN; BIRNCoordinating
Center. A National Human Neuroimaging Collaboratory Enabled By The
Biomedical Informatics Research Network (BIRN). IEEE Transactions
on Information Technology in Biomedicine. 2008
Mar;12(2):162-72.
86. Ford, J.; Roach, B.; Turner, J.; Brown, G.; Greve, D.;
Wible, C.; McCarthy, G.; Lauriello, J.; Belger, A.; Mueller, G.;
Calhoun, V.; Preda, A.; Keator, D.; O’Leary, D.; Lim, K.; Glover,
G.; Potkin, S.; Mathalon, D. Tuning in to the voices: A multi-site
fMRI study of auditory hallucinations. Schizophrenia Bulletin. 2009
Jan;35(1):58-66.
-
87. Potkin, S.G., Turner, J.A., Fallon, J.A., Keator, D.B.,
Guffanti, G., Macciardi, F., FBIRN. Gene Discovery Through Imaging
Genetics - Identification of Two Novel Genes Associated with
Schizophrenia. Molecular Psychiatry. 2009 Apr;14(4):416-28.
88. Potkin, S.G., Turner, J.A., Guffanti, G., Lakatos, A.,
Torri, F., Keator D.B., Macciardi F. Genome-wide strategies for
discovering genetic influences on cognition and cognitivie
disorders: methodological considerations. Cognitive
Neuropsychiatry. 2009;Jul;14(4):391-418.
89. Abe, S., Preda A., Turner J., Keator D.B., Potkin S.G., and
F. Birn. "DTI Co-registration Method Comparison Based on DTI
Tractography Analysis in the Human Brain." Neuroimage 47 (2009):
S51.
90. Fallon, J., Keator, D.B. Commentary on “In silico modeling
system: a national research resource for simulation of complex
brain disorders.”. Alzheimer’s Dementia. 2009; Jan: 5(1):5-6.
91. Keator D.B., Mukherjee J., Preda A., Highum D., Lakatos A.,
Gage A., Potkin S.G.. "Dopamine D2 and D3 receptor occupancy of
cariprazine in schizophrenic patients." Schizophrenia Bulletin,
2009; vol. 35, pp. 154-154.
92. Keator, D.B., Wei, D., Gadde, S., Bockholt, H., Grethe,
J.S., Marcus, D., Aucoin, N., Ozyurt, B. Derived Data Storage and
Exchange Workflow for Large-Scale Neuroimaging Analyses on the BIRN
Grid. Front Neuroinformatics. 2009;3:30.
93. Lakatos A., Derbeneva O., Younes D., Keator D.B., Bakken T.,
Lvova M., Brandon M., Guffanti G., Reglodi D., Saykin A., Weiner
M., Macciardi F., Schork N., Wallace D., Potkin S., ADNI.
Association between mitochondrial DNA variations and Alzheimer’s
Disease in the ADNI cohort. Neurobiology of Aging.
2010;31(8):1355-63.
94. Ozyurt I.B., Keator D., Wei D., Fennema-Notestine C., Pease
K., Bockholt B., Grethe J. Federated Web-accessible Clinical Data
Management within an Extensible NeuroImaging Database.
Neuroinformatics. 2010;23(1):98-106.
95. Amen DG, Newberg A, Thatcher R, Jin Y, Wu J, Keator D,
Willeumier K. Impact of playing American professional football on
long-term brain function. J Neuropsychiatry Clin Neurosci. 2011
Fall;23(1):98-106.
96. Gadde S., Aucoin N., Grethe J.S., Keator D.B., Marcus D.S.,
Pieper S., FBIRN, MBIRN, BIRN-CC. XCEDE: An Extensible Schema for
Biomedical Data. Neuroinformatics. 2011 Apr 9.
-
97. Borghammer P, Hansen SB, Eggers C, Chakravarty MM, Vang K,
Aanerud JF, Hilker R, Heiss WD, Rodell A, Munk OL, Keator D, and
Gjedde A. Glucose metabolism in small subcortical structures in
Parkinson’s disease. Acta Neurol Scand. 2011.
98. Helmer KG, Ambite JL, Ames J, Ananthakrishnan R, Burns G,
Chervenak
AL, Foster I, Liming L, Keator D, Macciardi F, Madduri R,
Navarro JP, Potkin S, Rosen B, Ruffins S, Schuler R, Turner JA,
Toga A, Williams C, Kesselman C; for the Biomedical Informatics
Research Network. Enabling collaborative research using the
Biomedical Informatics Research Network (BIRN). J Am Med Inform
Assoc. 2011 Apr 22.
99. Van Erp, TGM, Chervenak A., Kesselman C., D'Arcy M., Sobell
J.,
Keator D., Dahm L. et al. "Infrastructure for sharing
standardized clinical brain scans across hospitals." In
Bioinformatics and Biomedicine Workshops (BIBMW), 2011 IEEE
International Conference on, pp. 1026-1028. IEEE, 2011.
100. Rasmussen J., Lakatos A., Van Erp T., Kruggel F., Keator
D.B., Fallon J.,
Potkin S., Alzheimer’s Disease Neuroimaging Initiative.
Empirical derivation of the denominator region for computing
degeneration sensitive 18fluorodeoxyglucose ratios in Alzheimer’s
Disease based on the ADNI study. Biochim Biophy Acta - Molecular
Basis of Disease. 2012 Mar;1822(3):457-66.
101. Glover G.H., Mueller B.A., Turner J.A., Van Erp T.G, Liu
T., Greve D.,
Voyvodic J., Rasmussen J., Brown G., Keator D.B., Calhoun V.D.,
Lee H., Ford J., Mathalon D., Diaz M., O’Leary D., Gadde S., Preda
A., Lim K., Wible C., Stern H., Belger A., McCarthy G., Ozyurt B.,
Potkin S.G., FBIRN. Function Biomedical Informatics Research
Network Recommendations for Prospective Multi-Center Functional
Magnetic Resonance Imaging Studies. Journal of Magnetic Resonance
Imaging. 2012 Feb 7.
102. Poline J.B., Breeze J., Ghosh S., Gorgolewski K., Halchenko
Y., Hanke
M., Haselgrove C., Helmer K., Keator D.B., Marcus D., Poldrack
R., Schwartz Y., Ashburner A., Kennedy D. Data sharing in
neuroimaging research. Frontiers in Neuroinformatics. 2012;
6:9.
103. Chervenak A.L., van Erp T.G., Kesselman C., D’Arcy M.,
Sobell J., Keator D., Dahm L., Murray J., Law M., Hasso A., Ames
J., Macciardi F., Potkin S.G. A system architecture for sharing
de-identified, research-ready brain scans and health information
across clinical imaging centers. Studies in Health Technology and
Informatics. 2012; 175:19-28.
104. Keator D.B., Fallon J.H., Lakatos A., Fowlkes C., Potkin
S.G., Ihler A. Feed-Forward Hierarchical Model of the Ventral
Visual Stream Applied to
-
Functional Brain Image Classification. Journal of Human Brain
Mapping. 2012 Jul 30.
105. Keator, D. "Modality Neutral Techniques for Brain Image
Understanding." Machine Learning and Interpretation in
Neuroimaging. 2012: 84-92.
106. Keator D.B., Helmer K., Steffener J., Turner J.A., Van Erp
T.G.M.,
Gadde S., Ashish N., Burns G.A., Nichols B.N. Towards structured
sharing of raw and derived neuroimaging data across existing
resources. Neuroimage. 2013 Nov 15;82:647-61
107. Potkin, S.G., Keator D.B., Kesler-West M.L., Nguyen D.D.,
VanErp
T.G.M., Mukherjee J., Shah N., Preda A. D2 Receptor Occupancy
Following Lurasidone Treatment in Patients with Schizophrenia or
Schizoaffective Disorder. CNS Spectrums, 2013 Sep 30:1-6.
108. Rafii M.S., Baumann T.L., Bakay R.A.E, Ostrove J.M.,
Siffert J., Fleisher A.S., Herzog C.D., Barba D., Pay M., Tuszynski
M.H., Salmon D., Kordower J.H., Bishop K., Keator D.B., Potkin
S.G., Bartus R.T. A phase 1 study of sterotactic gene delivery of
AAV2-NGF for Alzheimer’s disease. Alzheimer’s Disease &
Dementia 2014 Jan 7.
109. Van Erp TG, Greve DN, Rasmussen J, Turner J, Calhoun VD,
Young S,
Mueller B, Brown GG, McCarthy G, Glover GH, Lim KO, Bustillo JR,
Belger A, McEwen S, Voyvodic J, Mathalon DH, Keator D, Preda A,
Nguyen D, Ford JM, Potkin SG, Fbirn. A multi-scanner study of
subcortical brain volume abnormalities in schizophrenia. Psychiatry
Res. 2014;222(1-2):10-6.
110. Van Erp TGM, Stark C., Rasmussen J., Turner J., Calhoun V.,
Razzak S.,
Lim K.O., Mueller B., Brown G., Bustillo J., Vaidya J., McEwen
S., Voyvodic J., Belger A., Mathalon D., Keator D.B., Preda A.,
Nguyen D., Ford J., Potkin S.G.. "Hippocampal Subfield Volume
Abnormalities in Individuals with Schizophrenia."
Neuropsychopharmacology, 2014; vol. 39, pp. S500-S500.
111. Lee, H.J., Preda A., Ford J.M., Mathalon D.H., Keator D.B.,
Van Erp
T.G.M., Turner J.A., Potkin S.G.. "Functional Magnetic Resonance
Imaging of Motor Cortex Activation in Schizophrenia." Journal of
Korean medical science. 2015; 30, no. 5: 625-631.
112. Wang L., Alpert K., Calhoun V., Keator D.B., King M., Kogan
A.,
Landis D., Tallis M., Potkin S.G., Turner J.A., Amite J.L.
SchizConnect: Mediating Schizophrenia Neuroimaging Databases for
Large-Scale Integration. Neuroimage Special Issue on Brain Imaging
Repositories. 2015.
-
113. Keator, D.B., Ihler, A. Crystal Identification in Positron
Emission Tomography Using Probabilistic Graphical Models. Nuclear
Science, IEEE Transactions on. 62.5 (2015): 2102-2112.
114. Ambite, J. L., Tallis, M., Alpert, K., Keator, D. B., King,
M., Landis, D., Konstantinidis, G., Calhoun, V. D., Potkin, S. G.,
Turner, J. A., & Wang, L. (2015) SchizConnect: Virtual Data
Integration in Neuroimaging. Data Integr Life Sci, 9162:37-51.
115. Keator D.B., Van Erp T.G, Glover G.H., Mueller B.A., Turner
J.A., Liu T., Greve D., Voyvodic J., Rasmussen J., Brown G.,
Calhoun V.D., Lee H., Ford J., Mathalon D., Diaz M., O’Leary D.,
Gadde S., Preda A., Lim K., Wible C., Stern H., Belger A., McCarthy
G., Ozyurt B., Potkin S.G., FBIRN. The Function Biomedical
Informatics Research Network Data Repository. Neuroimage Special
Issue on Brain Imaging Repositories. 2016.
116. Miller RL, Vergara V, Keator DB, Calhoun VD. A Method for
Inter-
temporal Functional Domain Connectivity Analysis: Application to
Schizophrenia Reveals Distorted Directional Information Flow. IEEE
Trans Biomed Eng. August 16, 2016.
117. Gorgolewski K.J.,Auer T.,Calhoun V.,Craddock C.,Das S.,Duff
E.,Flandin
G.,Ghosh S.,Halchenko Y.,Handwerker D.,Hanke M.,Keator D.B.,Li
X.,Maumet C.,Michael Z.,Nichols B.N.,Nichols T.,Poline J.B.,Roken
A.,Schaefer G.,Sochat V.,Turner J.A.,Varoquaux G.,Poldrack R. The
Brain Imaging Data Structure: a standard for organizing and
describing outputs of neuroimaging experiments. Data Science
Journal. 2016.
118. Maumet C., Auer T., Bowring A., Chen G., Das S., Flandin
G., Ghosh S.,
Glatard T., Gorgolewski K., Helmer K., Jenkinson M., Keator
D.B., Nichols N, Poline J.B., Reynolds R., Sochat V., Turner J.,
Nichols T. Sharing brain mapping statistical results with the
neuroimaging data model. Scientific Data. In Press.
119. Doran E, Keator D.B., Head E., Phelan M.J., Kim R., Totoiu
M., Barrio
J., Small G., Potkin S.G., Lott I. Down Syndrome, Partial
Trisomy 21, and Absence of Alzheimer’s Disease: The role of APP.
Journal of Alzheimer’s Disease. In Press.
Book Chapters, other
120. Keator, D.B. Information Management in Distributed
Biomedical Collaboratories. Methods Mol Biol: Biomedical
Informatics. 2009;569:1-23.
-
121. Liu T.T., Glover G., Mueller B., Greve D.N., Rasmussen J.,
Voyvodic J.T., Turner J.A., Van Erp T.G.M, Mathalon D., Andersen
K., Lu K., Brown G.G., Keator D.B., Calhoun V.D., Lee H.J., Ford
J.M., Diaz M., O’Leary D.S., Gadde S., Preda A., Lim K.O., Wible
C.G., Stern H.S., Belger A., McCarthy G., Ozyurt I.B., Potkin S.G.,
FBIRN. "Quality assurance in functional MRI." fMRI: From Nuclear
Spins to Brain Functions, pp. 245-270. Springer US, 2015.
122. Turner J.A., Pasquerello D., Turner M.D., Keator D.B.,
Alpert K., King
M., Landis D. Calhoun V.D., Potkin S.G., Tallis M., Ambite J.L.,
Wang L. "Terminology Development Towards Harmonizing Multiple
Clinical Neuroimaging Research Repositories." Data Integration in
the Life Sciences, pp. 104-117. Springer International Publishing,
2015.
Journal Articles, other
123. Le Caillec J.M., Pentland A.S., Turner J.A., Potkin S.G.,
Brown G.G.,
Keator D.B., McCarthy G.G. et al. "BOOTSTRAP METHODS IN SIGNAL
PROCESSING." IEEE Signal Processing Magazine, 2007.
124. Turner, J.A., Potkin, S.G., Brown, G.G., Keator, D.B.,
McCarthy, G.,
Glover, G.H. Neuroimaging for the diagnosis and study of mental
disorders. IEEE Signal Processing Magazine, 2007; 24(4),
112-11.
125. Lei W., Alpert K., Calhoun V., Keator D.B., King M., Kogan
A., Landis
D., Tallis M., Potkin S.G., Turner J.A., Amite J.L.
"Schizconnect: A one-stop web-based resource for large-scale
schizophrenia neuroimaging data integration." Schizophrenia
Bulletin, 2015; vol. 41, pp. S279-S279.
126. Keator D.B., Ihler A. "An Evaluation of Sparse Inverse
Covariance
Models for Group Functional Connectivity in Molecular Imaging."
arXiv preprint arXiv:1510.08508 (2015).
Journal Publications, Under Review
127. Nichols B.N., Ghosh S.G., Auer T., Grabowski T., Maumet C.,
Keator D.B., Pohl K., Poline J.B. Building a Web of Linked Data
Resources to Advance Neuroscience Research. Nature Neuroscience.
2016 – Under Review.
Medical Visualization Publications
128. Kaplan, Sadock, et. al. Comprehensive Textbook of
Psychiatry, 2000.
-
129. “The Journal of the California Alliance for the Mentally
Ill”. Weisburd, DE. Volume 8, No. 3, 1997.
130. “The California Psychologist: Neuropsychology Special
Edition”. Lees-
Haley, P. Volume 30, No. 8, Aug 1997. Medical Visualization
Publications
131. NOVA , “Can Science Stop Crime”, 2012.
132. CourtTV, “John Couey Trial”, 2007.
133. CBS News, “48 Hour Mystery”, 2006.
134. A&E, “Love Chronicals”, 2000.
135. Discovery Magazine, “FEAR”, 1997.
136. ABC News, “The Pulse”, 1998.
137. Community Outreach, “Alliance for the Mentally Ill: Brain
Imaging Center”, Mental Health Association of Orange County,
1998.
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Patents
1. Using magnetic resonance imaging to generate brain image
phenotype and corelating scanning variance with preferential
nervous system disorders; bioinformatics. S Potkin, JH Fallon, F
Macciardi, J Turner, D Keator - US Patent App. 11/974,516,
2007.
DIVERSITY Neuroinformatics and Data Sharing Task Force of
International Neuroinformatics Coordinating Facility, Contributing
Member
(http://www.incf.org/activities/our-programs/datasharing/neuroimaging-task-force
) - Participate in international data standards working group. This
group promotes diversity by inclusion in activities and improving
data sharing worldwide to provide researchers in less developed
nations with access to data for scientific discovery. REFERENCES
David Kennedy, Ph.D. Professor Director - Division of
Neuroinformatics
-
Department of Psychiatry University of Massachusetts Medical
Center 508-856-8228 [email protected] Hal Stern, Ph.D. Ted
and Janice Smith Family Foundation Dean and Professor of Statistics
Donald Bren School of Information and Computer Science University
of California, Irvine 949-824-7405 [email protected] Steven L. Small,
Ph.D., M.D. Professor and Chair Department of Neurology University
of California, Irvine 714-456-7352 [email protected] Steven G. Potkin,
M.D. Professor Department of Psychiatry and Human Behavior
University of California, Irvine 949-824-8061 [email protected]
Jean-Baptiste Poline, Ph.D. Research Scientist Helen Wills
Neuroscience Institute University of California, Berkley
510-643-3340 mailto:[email protected] Jessica Turner, Ph.D.
Associate Professor Department of Psychology Georgia State
University 404-413-6211 mailto:[email protected] James Fallon,
Ph.D. Professor – Emeritus Department of Psychiatry and Human
Behavior University of California, Irvine 949-294-4292
-
mailto:[email protected] Ira Lott, M.D. Professor Emeritus of
Pediatrics and Neurology Director, Down Syndrome Program Department
of Neurology University of California, Irvine 714-456-5333
mailto:[email protected] Carl Kesselman, Ph.D. Dean’s Professor,
Epstein Department of Industrial and Systems Engineering Fellow,
Information Sciences Institut Viterbi School of Engineering
Professor, Preventive Medicine Keck School of Medicine University
of Southern California 310-448-9338 [email protected]