Crop Ontology towards the semantic integration of open plant trait data www.cropontology.org Elizabeth Arnaud, Luca Matteis, Rosemary Shrestha, Milko Skofic, Laurel Cooper, Pankaj Jaiswal, Pierre-Yves Chibon, Mark Wilkinson, Richard Bruskiewich, Graham McLaren
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Crop Ontology towards the semantic integration of open plant trait data Elizabeth Arnaud, Luca Matteis, Rosemary Shrestha, Milko Skofic,
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Crop Ontologytowards the semantic
integration of open plant trait data
www.cropontology.org
Elizabeth Arnaud, Luca Matteis, Rosemary Shrestha, Milko Skofic, Laurel Cooper, Pankaj Jaiswal, Pierre-Yves Chibon, Mark Wilkinson, Richard Bruskiewich, Graham McLaren
ProblemBreeders databases use different names for the same trait, or same
trait name for different things.Data are often unstructured.They are NOT interoperable.
Knowledge domain for plant breedersbreeding = ”the art and science of changing the traits of plants in order to produce desired characteristics in given environments.”
salinity tolerance
16 crops...BananaBarleyCassavaChickpea Common bean Cowpea Groundnut Maize Pearl Millet
Pigeon peaPotatoRiceSorghumSoybeanWheat Yam
SemanticsFrom OBO to RDF/SKOSresolvable HTTP URIs
<http://www.cropontology.org/rdf/CO_324:0000002> a skos:Concept ; rdfs:label "Flag leaf weight"@en ; dc:creator _:b1 ; skos:definition "Weight of the flag leaf (the one just below the panicle)." ; skos:inScheme co:sorghum ; skosxl:prefLabel [ a skosxl:Label ; co:acronym [ a skosxl:Label ; skosxl:literalForm "FLGWT" ] ; skosxl:literalForm "Flag leaf weight"@en ] .