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Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign
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Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Dec 16, 2015

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Page 1: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Computational neuroethology:

linking neurons, networks and behavior

Mark E. Nelson

Beckman InstituteUniv. of Illinois, Urbana-Champaign

Page 2: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

TALK OUTLINE

Multiscale modeling in computational neuroethologyModel system - weakly electric fishModeling strategies Level I: Behavior Level II: Sensory physics Level III: Single neurons Level IV: Local networks

Summary

Page 3: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

MultiscaleOrganization of

theNervous System

Organism

Brain/CNS

Networks

Neurons

Synapses

Molecules

Brain maps

1 m

10 cm

1 mm

100 m

1 m

1 Å

1 cm

Churchland & Sejnowski 1988Delcomyn 1998

Page 4: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Neuroethology:Neural Basis of

Behavior

EnvironmentDelcomyn 1998

Sensors Effectors

Organism

SensoryProcessing

MotorControl

NeuralIntegration

Brain

Body

Page 5: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Neuroethology of Electrolocation

Big picture: What are the neural mechanisms and computational principles of active sensing?

Small picture: How do weakly electric fish capture prey? What computations take place in the CNS during prey capture behavior?

Page 6: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

BACKGROUND

Weakly Electric Fish

Page 7: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Distribution of Electric Fish

Page 8: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Black ghost knifefish (Apteronotus albifrons)

Page 9: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

mech

an

o

MacIver, fromCarr et al., 1982

Electroreceptors ~15,000 tuberous electroreceptor organs1 nerve fiber per electroreceptor organ

up to 1000 spikes/s per nerve fiber

Page 10: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Ecology & Ethology of A. albifrons

inhabits tropical freshwater rivers and streams in South America

nocturnal; hunts at night for aquatic insect larvae and small crustaceans in turbid water

uses electric sense for prey detection, navigation, social interactions

ribbon fin propulsion – forward/reverse/hover

Page 11: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Self-generated Electric Field

Page 12: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Principle of active electrolocation

Page 13: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Prey-capture Behavior

Daphnia magna(water flea)

1 mm

Page 14: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

BEHAVIOR

Electrosensory-mediatedPrey capture behavior

Page 15: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Prey-capture video analysis

Page 16: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Prey capture behavior

Page 17: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Fish Body Model

Page 18: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Motion capture softwareMotion capturesoftware

Page 19: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

MOVIE: prey capture behavior

Page 20: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Rapid reversal marks putative time-of-detection

Velocity

Profile(N=116)

Acceleration

Profile(N=116)

Zero-crossingin acceleration

is used asdetection time

Page 21: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Distribution of detection points

Front view Side view

Page 22: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Active motor strategies:

Dorsal roll toward prey

Page 23: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Neuroethology:Neural Basis of

Behavior

EnvironmentDelcomyn 1998

Sensors Effectors

Organism

SensoryProcessing

MotorControl

NeuralIntegration

Brain

Body

Page 24: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

PHYSICSof

electrosensory image formation

Page 25: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Electrosensory Image Reconstruction

Page 26: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Voltage perturbation at skin :

Estimating Daphnia signal strength

waterprey

waterpreyfish ar

rE

/21

/133

electrical contrastprey volume

fish E-field at prey

distance from prey to receptor

THIS FORMULA CAN BE USED TO COMPUTE THE SIGNAL AT EVERY POINT ON THE BODY

SURFACE

Page 27: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.
Page 28: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Reconstructed Electrosensory Image ()

Page 29: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Electrosensory Images

Page 30: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

ELECTROPHYSIOLOGYof

primary sensory afferents

Page 31: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

mech

an

o

MacIver, fromCarr et al., 1982

Electroreceptors ~15,000 tuberous electroreceptor organs1 nerve fiber per electroreceptor organ

Page 32: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Neural coding inelectrosensory afferent fibers

Page 33: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Probability coding(P-type) afferent spike trains

00010101100101010011001010000101001010

Phead = 0.333

Phead = 0.337 Phead =

0.333

Page 34: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Model of primary afferents

Brandman & Nelson Neural Comp. 14, 1575-1597 (2002)

Page 35: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

ELECTROPHYSIOLOGYof

CNS electrosensory neurons

Page 36: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

ELL Circuitry

Page 37: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

ELL histology

Page 38: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Compartmental Modeling

Page 39: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Compartmental ModelingHodgkin-Huxley Model for

voltage-dependent conductances

Page 40: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Compartmental Modeling

)()()( 43LmLKmKNamNaion EVgEVngEVhmgI

mVmVdt

dmmm )()1)((

hVhVdt

dhhh )()1)((

nVnVdt

dnnn )()1)((

Hodgkin-Huxley Model forvoltage-dependent

conductances

Page 41: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

ELL pyramidal cell

Page 42: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

ELECTROPHYSIOLOGYof

electrosensory networks

Page 43: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Central Processing in the ELL

Page 44: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Spatiotemporal processing in 3 parallel ELL maps

Primary Electrosensor

y Afferents

Centromedial map Space: small RFs Time: low-pass

Centrolateral map Space: med. RFs Time: band-pass

Lateral map Space: large RFs Time: high-pass

tem

pora

l

inte

grat

ion

bothspatial

integration

Page 45: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Multiresolutionfiltering in the CNS

Page 46: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Neuroethology:Neural Basis of

Behavior

EnvironmentDelcomyn 1998

Sensors Effectors

Organism

SensoryProcessing

MotorControl

NeuralIntegration

Brain

Body

Page 47: Computational neuroethology: linking neurons, networks and behavior Mark E. Nelson Beckman Institute Univ. of Illinois, Urbana-Champaign.

Acknowledgements Malcolm MacIver Noura Sharabash Relly Brandman Jozien Goense Rama Ratnam Rüdiger Krahe Ling Chen Kevin Christie Jonathan House

NIMH and NSF