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Characterization of the carbon fluxes of a vegetateddrained lake basin chronosequence on the AlaskanArctic Coastal Plain
D . Z O N A *1 , W. C . O E C H E L w , K . M . P E T E R S O N z, R . J . C L E M E N T S § , K . T . PAW U }and S . L . U S T I N *
*Department of Land, Air, and Water Resources, Center for Spatial Technologies and Remote Sensing (CSTARS), University of
California, Davis, CA 95616, USA, wGlobal Change Research Group, Department of Biology, San Diego State University, San
Diego, CA 92182, USA, zDepartment of Biology, University of Alaska, Anchorage, AK 99508, USA, §School of GeoSciences,
University of Edinburgh, Edinburgh, UK, }Department of Land, Air, and Water Resources, University of California, Davis,
CA 95616, USA
Abstract
Greenhouse gas fluxes from vegetated drained lake basins have been largely unstudied,although these land features constitute up to 47% of the land cover in the Arctic Coastal Plainin northern Alaska. To describe current and to better predict future sink/source activity of theArctic tundra, it is important to assess these vegetated drained lake basins with respect to thepatterns of and controls on gross primary production (GPP), net ecosystem exchange, andecosystem respiration (ER). We measured CO2 fluxes and key environmental variables duringthe 2007 growing season (June through August) in 12 vegetated drained lake basinsrepresenting three age classes (young, drained about 50 years ago; medium, drained between50 and 300 years ago; and old, drained between 300 and 2000 years ago, as determined byHinkel et al., 2003) in the Arctic Coastal Plain. Young vegetated drained lake basins had boththe highest average GPP over the summer (11.4 gCO2 m�2 day�1) and the highest averagesummer ER (7.3 gCO2 m�2 day�1), while medium and old vegetated drained lake basinsshowed lower and similar GPP (7.9 and 7.2 gCO2 m�2 day�1, respectively), and ER (5.2 and4 gCO2 m�2 day�1, respectively). Productivity decreases with age as nutrients are locked up inliving plant material and dead organic matter. However, we showed that old vegetateddrained lakes basins maintained relatively high productivity because of the increaseddevelopment of ice-wedge polygons, the formation of ponds, and the re-establishment ofvery productive species. Comparison of the seasonal CO2 fluxes and concomitant environ-mental factors over this chronosequence provides the basis for better understanding thepatterns and controls on CO2 flux across the coastal plain of the North Slope of Alaska and formore accurately estimating current and future contribution of the Arctic to the global carbonbudget.
Keywords: Arctic Coastal Plain, carbon fluxes, classification of vegetated drained lake basins, climate
feedbacks, global change, old-growth ecosystems, trace gas fluxes, vegetated drained lake basins
Received 19 March 2009; revised version received 7 September 2009 and accepted 1 October 2009
Introduction
Together, thaw lakes and vegetated drained lake basins
comprise the majority of the land surface (50–70%) of
the Arctic Coastal Plain in northern Alaska (Hussey &
Michelson, 1966; Hinkel et al., 2003, 2005). In particular,
vegetated drained lake basins constitute up to 47% of
the land cover in the northern part of the Arctic Coastal
Plain (Hinkel et al., 2005).
Thaw lake formation is a consequence of the com-
bined action of thermal erosion of the edges of small
ponds and permafrost melting (Carson & Hussey, 1962).
The elliptical shape and the orientation of these lakes
are the product of wind-driven circulation cells, result-
ing in the lakes’ long axes being perpendicular to the
Correspondence: D. Zona, tel. 1 001 30 52 092, fax 1 001 30 54 353,
email: [email protected]
1Present address: Department of Biology, University of Antwerp,
Research Group of Plant and Vegetation Ecology, Universiteitsplein
1, B-2610 Wilrijk, Belgium, tel. +32 326 52831, fax +32 32 65227,
e-mail: [email protected]
Global Change Biology (2010) 16, 1870–1882, doi: 10.1111/j.1365-2486.2009.02107.x
1870 r 2009 Blackwell Publishing Ltd
Page 2
main wind direction (Mackay, 1956; Rex, 1961; Carson &
Hussey, 1962). These erosion cells lead to expansion of
the lakes and incorporation of nearby ponds or other
lakes (Hinkel et al., 2003). The final stage of the thaw
lake cycle involves drainage due to some combination
of bank overflow, ice wedge erosion, coastal erosion,
headward erosion by streams (Hopkins, 1949; Mackay,
1988) or, in a few cases, human intervention (Hinkel
et al., 2007).
After drainage, vegetation establishes on the drained
lake bed, and organic matter accumulates from the
buildup of plant detritus (Mackay & Burn, 2002; Hinkel
et al., 2003; Bockheim et al., 2004). The thickness of the
organic layer and the fraction of nonextractable carbon
increase with time since drainage, transforming the
organic matter into more recalcitrant forms (Bockheim
et al., 2004; Bockheim & Hinkel, 2007).
Greenhouse gas fluxes from lakes and vegetated
drained lake basins have been largely unstudied. There
has been some research on CO2 flux over lakes (e.g.
Coyne & Kelley, 1974; Kling et al., 1991), but most
research on the patterns and controls of CO2 flux in
tundra regions has been carried out on areas outside of
lakes or vegetated drained lake basins (see, e.g. Oechel
et al., 2000; Kwon et al., 2006). This relative lack of
studies undermines our ability to estimate the future
impact of climate change on land atmosphere CO2
fluxes in the Arctic.
Young vegetated drained lake basins appear to con-
tain the most productive vegetation and the greatest
nutrient availability (K.M. Peterson unpublished re-
sults; Billings & Peterson, 1980; Bliss & Peterson,
1992). Runoff and nutrients move downslope from
more elevated sites (Kummerow et al., 1987), accumu-
late in the thaw lakes, and become available to plants
after the lakes drain. It has been assumed but not
proved that, as nutrients are progressively locked up
in plant material during the terrestrial phase, plant
productivity declines. This decline is further assumed
to cause a slowing of carbon accumulation with age
(Billings & Peterson, 1980; Hinkel et al., 2003; Bockheim
et al., 2004). This general pattern fits Odum’s (1969)
prediction of decreasing net primary production and
net ecosystem exchange (NEE) with maturity of the
ecosystem (Odum, 1969). Therefore, medium and old
vegetated drained lake basins are thought to become
progressively less productive.
Because soil moisture operates as a major control on
ecosystem respiration (ER) and NEE (Billings et al., 1983;
Oechel et al., 1998), it would be expected to play a key
role, together with time after drainage, in predicting
carbon exchange from the vegetated drained lake basins.
The research reported here was designed to investi-
gate some of the patterns of and controls on the
heterogeneity of carbon fluxes in the Arctic at the
landscape scale. In particular we assessed whether the
current classification of the Arctic Coastal Plain, based
on vegetated drained lake age (Hinkel et al., 2003), can
be used to predict the differences in primary produc-
tivity and carbon uptake from the Arctic tundra. We
also investigated the controls of key environmental
variables [e.g. soil moisture, thaw depth, photosynthe-
tically active radiation (PAR) incoming and outgoing,
net radiation, air temperature, vapor pressure deficit,
soil temperature, and precipitation] on NEE, GPP, and
ER in the age-graded vegetated drained lake basins, to
better understand the processes controlling their carbon
fluxes.
Study site
In this study, we selected 12 vegetated drained lake
basins (Table 1) based on the age classification of the
Barrow Peninsula by Hinkel et al. (2003) in the northern
part of the Arctic Coastal Plain. These sites included
four young (draining about 50 years ago), four medium
(draining between 50 and 300 years ago), and four old
(draining between 300 and 2000 years ago) vegetated
drained lake basins (Fig. 1). Hinkel et al. (2003) provides
details on the vegetated drained lake basins classifica-
tion. Figure 2 presents a visual representation of the
vegetation at these sites. Three of the vegetated drained
lake basins (the adjacent Young 1 and Young 2 that form
Dry Lake, and Footprint Lake) were artificially drained
in 1949–1950 to allow access to a natural gas well near
Barrow (Hinkel et al., 2007). In the other cases the cause
of the drainage is unknown or difficult to verify; how-
ever, in lakes near the ocean, coastal erosion is probably
a major factor leading to drainage (Hinkel et al., 2007).
Table 1 Site name, age (young 0–50 years old, medium 50–
300 years old, old 300–2000 years old) and locations of the 12
vegetated drained lake basins measured during summer 2007
Site Age Latitude Longitude
Young 1 Young 71115023.0400N 156137044.4000W
Young 2 Young 71114026.5200N 156126042.6000W
Young 3 Young 71114050.8500N 156136052.0900W
Medium 1 Medium 71115012.6500N 156133051.9300W
Medium 2 Medium 71115057.3200N 156132040.9100W
Medium 3 Medium 71114059.4700N 156122041.4000W
Old 1 Old 71115010.0800N 156132038.4000W
Old 2 Old 71115026.8100N 156131010.5600W
Old 3 Old 71114047.3800N 156123051.8500W
Footprint Lake Young 71116015.5400N 156139049.1900W
Thin Lake Old 70158039.3500N 156155036.8600W
Elbow Lake Medium 711 9028.3900N 156145010.1200W
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After drainage, plant succession occurs as edaphic
conditions change. The graminoid Arctophila fulva,
dominant in the wettest areas, in addition to Dupontia
fisheri and Eriophorum scheuchzeri (sedges) are the first
plants to establish. In general, the vascular plants of the
young vegetated drained lake basins are thought to be
more productive than those at older sites (Billings &
Peterson, 1980; Bliss & Peterson, 1992). In medium aged
vegetated drained lake basins, the most characteristic
vegetation type is formed by large, often circular, clones
of Carex aquatilis and Eriophorum angustifolium. Medium
and young vegetated drained lake basins share some
commonality in vegetation (A. fulva, D. fisheri, and
E. scheuchzeri).
After the lakes drain, frozen soil contracts during
winter, cracking the surface into polygons. In spring
and summer, these cracks are filled by water, which
turns into ice during the following fall. Expansion of the
freezing water displaces soil and forms ice-wedges
(Britton, 1957; Billings & Peterson, 1980). The repeated
cracking, inundation, and freezing lead to the expan-
sion of the ice-wedges and to the rising of the rims of
the polygons. The ice-wedge polygons become more
evident as the vegetated drained lake basins age (see
Fig. 2; Hussey & Michelson, 1966; Billings & Peterson,
1980). The rising of the rims creates depressions in the
central areas, which fill with water and form small
ponds. The deeper ponds of older aged drained lakes
are dominated by A. fulva (Billings & Peterson, 1980;
Bliss & Peterson, 1992). In the shallower ponds the
vegetation is mainly composed of C. aquatilis and
Sphagnum ssp., while Dicranum elongatum is typically
present in the ice-wedge polygon rim.
Materials and methods
Period of measurements
Nine of these 12 sites were measured three times each
(Young 1–3, Medium 1–3, Old 1–3, shown in Fig. 1, and
Table 1), with a rotation of three eddy covariance towers
every 4–9 days from the middle of June to the end of
August 2007.
The data collection was organized into weeks (week
1: June 12–18; week 2: June 18–25; week 3: June 25–30;
week 4: June 30–July 9; week 5: July 9–14; week 6: July
Fig. 1 Landsat-7 image from August 30, 2000 of the North Slope of Alaska (displayed is Band 4). Indicated are the vegetated drained
lake basins measured during the summer of 2007.
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16–24; week 8: August 1–7; week 9: August 7–13; week
10: August 13–17; week 11: August 17–21; week 12:
August 22–28). Data from week 7 (July 24–31) were
not included due to the large data loss. Early season
refers to weeks 1–5, peak season to weeks 6–8, and late
season to weeks 9–12.
Three of the 12 vegetated drained lake basins (Foot-
print Lake, Elbow Lake, and Thin Lake, shown in bold
in Fig. 1), occur in locations without road access and
were measured once with the assistance of a helicopter
between July 16 and 24 (week 6).
Eddy covariance measurements
Fluxes of CO2, H2O, and energy were measured using
eddy covariance, a micrometeorological method that
measures the net exchange of a scalar between the
biosphere and the atmosphere (Swinbank, 1951; Desjar-
dins & Lemon, 1974; Baldocchi, 2003). Three portable
eddy covariance towers were used to measure CO2 and
H2O and energy fluxes in the 12 sites. The CO2 and H2O
fluxes were measured using an open path infrared
analyzer (Li-COR 7500, Li-COR, Lincoln, NE, USA).
Wind speed, direction, and the energy fluxes were
measured using a sonic anemometer (Model CSAT3,
Campbell Scientific, Logan, UT, USA). The CO2 and
H2O fluxes, and sonic windspeeds were sampled and
recorded at a 10 Hz sampling rate using a model CR
3000 datalogger (Campbell Scientific Inc.).
The sonic anemometer and the infrared analyzer
were positioned at a height from 2.0 to 2.7 m, with the
sonic anemometer oriented toward the predominant
wind direction (eastward). The height of the sonic
anemometer was mostly related to the slight differences
in topography at each of the sites. The precise orienta-
tion of the anemometer was calculated using a Trimble
GPS. Orientations were flagged and initial orientations
were replicated during subsequent visits.
CO2 and H2O vapor were calibrated every 2–4 weeks
using ultra high-purity nitrogen for the zero CO2 and
H2O, and a 729 ppm CO2 for the CO2 span (CO2 in air;
certified grade � 1 ppm, Matheson Gas Product, Mon-
tgomeryville, PA, USA). A dew point generator (Li-610,
Li-COR, Lincoln) was used to produce an air stream
with a known water vapor dew point (typically 7 1C
lower than the ambient air temperature) for H2O vapor
calibration.
Postprocessing of the eddy covariance data
Fluxes of CO2 and H2O vapor, sensible heat and
momentum were calculated using the EDIRE software
(version 1.4.3.1169, Robert Clement, University of
Edinburgh). Obvious data outliers were removed,
which were values more than 6 SD from the 30 min
mean for CO2 and H2O vapor and 410 SD from the
30 min mean for the wind velocity components, u, v, and
w. A two components rotation was applied to set mean
vertical (w) and lateral (v) velocity components to zero.
Time delays were calculated using a cross-correlation
function of the scalar fluctuation and the vertical wind
velocity.
Fig. 2 Oblique photographs and characteristic appearance of
the vegetation shown on the bottom right of three vegetated
drained lake basins: (a) young, (b) medium, and (c) old. Notice
the white cottony heads of Eriophorum scheuchzeri in the young
basin (a).
CHARACTERIZATION ON THE CARBON FLUXES IN THE ARCTIC COASTAL PLAIN 1873
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A frequency response correction was applied to the
eddy covariance fluxes following Moore (1986) and
using theoretical attenuation functions and Kaimal
model spectra to account for high-frequency and
low-frequency fluctuations in signal losses. Correction
for density change was applied following Webb et al.
(1980). Further correction using the energy budget
closure ratio, as suggested by some researchers includ-
ing Twine et al. (2000), was not carried out. In fact, we
agreed with the critical analysis of Ham & Heilman
(2003) and Baldocchi (2003) that point out that the
energy budget ratio method is based on assumptions
(not supported theoretically nor empirically) that CO2
and H2O vapor measurement errors are identical and
that therefore, the errors of sensible heat and water
vapor are proportional. The other assumptions required
by the energy budget closure correction and possibly
not met are that there are no adjective errors, as dis-
cussed by Paw U et al. (2000) and that radiation and
ground heat flux measurements are highly accurate and
have the same footprint as the eddy covariance mea-
surements of interest.
The energy budget closure averaged 92%, with a
range of 85–97% on a weekly basis, with no consistent
differences among sites. The efficacy of the corrections
applied was confirmed with the energy budget closure
checks, which revealed a 92% closure average, consid-
ered very good in comparison with many Fluxnet sites
(Wilson et al., 2002). Data quality were assessed by
analysis of energy budget closure and by comparison
of cospectra of w0CO02, w0T0, w0H2O0 (Kaimal et al., 1972).
The data were filtered by wind direction, and only wind
directions within � 901 from the sonic orientation were
used thereby excluding data outside of the footprint of
interest. A friction velocity (u*) threshold of 0.15–
0.3 ms�1, depending on the site, was used as cut off,
and data below the appropriate (u*) values were re-
moved.
Two footprint models were applied to the data (Hsieh
et al., 2000; Kljun et al., 2004; Detto et al., 2006). Both
models indicated that the majority of the fluxes were
coming from the first 150–200 m upwind of the eddy
tower.
Linear interpolation was used to fill short gaps, from
0.5 to 2.5 h (Falge et al., 2001). Larger gaps were not
interpolated and the data from days with these gaps
were not included in the analysis (week 7). After gap
filling, the data from the same week in each of the sites
were averaged for the same time blocks and they were
summed to estimate a typical daily NEE. Because there
was no darkness at the beginning of the season, ER was
calculated at zero PAR from the regression of NEE
against light intensity. Later in the season ER was
estimated as an average of CO2 fluxes at zero PAR.
Environmental variables
Manual data collection. In nine of the 12 sites (the sites
where the sampling was replicated), a square grid of
100 points (100 m� 100 m, with one point every 10 m)
was established to measure thaw depth and soil
moisture over the season. The grids were positioned
depending on the accessibility of the sites, generally
20–100 m south of the eddy covariance tower on the
western edge of the vegetated drained lake basins
(Fig. 3), following procedures described by the Active
Layer Protocol based on the ITEX guidelines
Fig. 3 Quickbird image from August 1 and 2, 2002 (from
Manley et al., 2004), loaded as color infrared, of the vegetated
drained lake Old 1. Note the position of the eddy covariance
tower and one of the transects of spectral measurements (in
yellow) and of the grid (green) where thaw depth and soil
moisture measurements were recorded. Noticeable are the red
ponds with the most productive vegetation. The red and blue
lines are roads.
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(http://www.geog.ubc.ca/itex/library/). A GPS (Garmin
International Inc., Olathe, KS, USA) was used to
establish the four corners of the grid, and each of the
100 points inside the grid was flagged.
During the period that the eddy covariance tower
was at each site, thaw depth and soil moisture
measurements were taken at all grid points using a
graduated metal rod and a Fieldscout TDR 300 (12 cm
probe). Soil moisture measurements were made when
the thaw depth was � 12 cm (the length of the probe).
Less than 1% of the measurements were excluded as a
result.
Automated data collection. Environmental variables were
also recorded continuously during the period the eddy
covariance towers were at each of the sites. All the
environmental measurements were sampled every
minute, averaged over 30 min, and recorded using the
datalogger CR 3000 (Campbell Scientific Inc.) that was
also used to acquire the eddy covariance data. Soil
moisture was measured continuously at each site
using four probes (each 5 cm long) inserted diagonally
in the 0–10 cm depth profile at four different locations
(ECH2O-5, Decagon Device Inc., Pullman, WA, USA)
and recorded with the CR 3000 datalogger. All soil
moisture probes used were laboratory and field
calibrated during the summer.
A net radiometer (Model NR-Lite, Kipp and Zonen,
Delft, the Netherlands) was used to measure the net
radiation in the spectral range of 0–100 mm. Incoming
and reflected (PAR, 0.4–0.7mm) was measured with two
PAR sensors (Model LI-190SB, LI-COR Inc.). The PAR
sensors were calibrated at the end of the summer, and
appropriate calibration coefficients were retroactively
applied to the data. The net radiometer and the PAR
sensors were installed on a tripod at about 1.5 m height
above the ground, close to the eddy covariance tower.
Air temperature and relative humidity were measured
using a thermistor and capacitive RH probe (Model
HMP45C-L, Vaisala Inc., Helsinki, Finland). Soil
temperatures were measured using type-T
thermocouples at the ground surface (i.e. the top of
the moss layer or, when not present, the top of the
organic litter layer) and at 5 and 10 cm below the
ground surface. Ground heat flux (G) was measured
using five soil heat flux plates (Model HFT3, REBS Inc.,
Seattle, WA, USA) buried between 2 and 5 cm below the
ground surface.
Spectral measurements
Field spectral reflectances were collected at 11 of the 12
vegetated drained lake basins (data at one site is miss-
ing due to harsh weather conditions) mainly during
clear sky conditions from July 20 to August 28 (weeks
6–12). These measurements were collected using a full
range spectrometer (350–2500 nm) (Analytical Spectral
Devices, Boulder, CO, USA) and standardized to Spec-
tralon panel (Labsphere, North Sutton, NH, USA). The
spectra were collected at 10–20 points in the footprint of
the eddy covariance towers in one or two transects
every 10 m from the eddy covariance tower to up to
100–200 m in eastward directions, the prevalent wind
direction. The spectra were recorded at about 1.5 m
above the ground, corresponding to a circular surface
area of about 66 cm in diameter for a field of view of 251.
The aerial extent of these measurements is about 3.4 m2
for 10 measurements and 6.8 m2 for 20 measurements.
Several vegetation indexes [normalized difference
vegetation index (NDVI), Tucker, 1979; normalized dif-
ference nitrogen index (NDNI), Serrano et al., 2002;
normalized difference water index (NDWI), Gao, 1996;
water band index (WBI), Penuelas et al., 1997; normal-
ized phaeophytinization index (NPQI), Barnes et al.,
1992; and cellulose absorption index (CAI), Nagler
et al., 2000) were calculated from the spectra to estimate
biophysical parameters in each of the vegetated drained
lake basins. NDVI is related to plant biomass in the
predominantly herbaceous tundra communities, NDNI
to plant nitrogen content, NDWI and WBI to plant
water content, CAI to litter content, and NPQI to
phaeophytin concentration and chlorophyll degrada-
tion. The two water indexes (NDWI and WBI) had very
similar results, so only the results from the analysis
using NDWI are reported. We choose NDWI because it
is a normalized index and it was proven to be less
sensitive to atmospheric effects (Gao, 1996).
The validity of NDVI has been demonstrated in the
Arctic (Hope et al., 1993; Stow et al., 1998). We assume
that even though NDWI, CAI, and NPQI were not
directly tested for tundra vegetation, because their
calculation is based on the absorption features of water
(NDWI), cellulose (CAI), and phaeophytin (NPQI),
these should be independent from the geographic loca-
tion. On the other hand, nitrogen content (and conse-
quently NDNI) is correlated with the absorption
characteristics of N–H and C–H bonds associated with
leaf proteins (Curran, 1989; Barton et al., 1992). These
features could vary across different plant species, but
they have been found to be valid across broad range of
plant species and ecosystems, such as deciduous, con-
iferous forests, Mediterranean shrubs, and temperate
forests (Matson et al., 1994; Martin & Aber, 1997; Smith
et al., 2002, 2003; Serrano et al., 2002). However, because
most of these indexes were not directly validated in the
Arctic tundra, we are using them as relative, not abso-
lute, indicators of the water, litter, chlorophyll degrada-
tion, and nitrogen content. We look forward to future
CHARACTERIZATION ON THE CARBON FLUXES IN THE ARCTIC COASTAL PLAIN 1875
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studies that further validate these indexes for the Arctic
regions.
Figure 3 shows the transect that was used to collect
the spectral reflectance measurements over an old
vegetated drained lake basins (old 1).
Statistical analysis
We analyzed the data, averaged weekly for each age-
graded vegetated drained lake, using a linear mixed
effects model with fixed effects for weeks and age and a
random effect for site, to account for possible depen-
dence of repeated measures (SAS for Windows version
9.2, SAS Institute Inc., Cary, NC, USA). Model fit was
assessed using a graphical analysis of residuals and a
Shapiro–Wilk test for normality. Pairwise comparisons
were made using the Tukey adjustment for multiple
testing. The linear mixed effects model was used to
assess the additional impact of age and time. However,
this model did not capture the importance of all the
variables of interest, and other models, described next,
were applied to the data.
General linear modeling (SYSTAT, version 10, Systat
Software Inc., 2002), with stepwise multiple regression
approach, was used to discriminate between variables
and rank the most important environmental factors
correlated with CO2 fluxes. One way ANOVA (using the
least square mean and Bonferroni’s post hoc test) was
used to test the significance of the differences in CO2
fluxes, soil moisture, thaw depth, and other environ-
mental variables among age-graded vegetated drained
lake basins during the different time periods. These
models were applied to the data both for the entire
season (for the data from weeks 1–12) and divided into
three periods: early season (weeks 1–5), peak season
(weeks 6–8) and late season (weeks 9–12) to explore
differences in controls on the CO2 fluxes at different
times in the growing season.
Results
Gross primary production (GPP), averaged over the
entire summer season, was highest in young vegetated
drained lakes when compared with medium and old
aged vegetated drained lakes (Fig. 4a), which showed
no difference. Only the difference in GPP between
young and old vegetated drained lakes was significant
(one-way ANOVA Fisher’s least significant difference test
P 5 0.037). Young vegetated drained lake basins
showed the highest plant biomass (NDVI), the max-
imum plant nitrogen (NDNI) and the highest plant
water content (NDWI), as deduced from spectral mea-
surements (Fig. 5).
ER (Fig. 4a), averaged over the entire season was also
found to be highest in young vegetated drained lake
basins, followed by medium and then old. The one-way
ANOVA Fisher’s least significant difference test showed a
significant difference in ER between young and med-
ium (P 5 0.008), and slightly significant difference be-
tween young and old vegetated drained lake basins
(P 5 0.059).
Plant biomass and plant nitrogen content are both
related with water availability, as NDNI was correlated
with plant water content (NDWI) (Pearson’s correlation
coefficient of 0.74). NDWI explained 73% of the varia-
bility in NDVI, highlighting the relevance of hydrological
conditions to plant productivity in the Arctic tundra. The
microtopographic controls on establishment of produc-
tive species is demonstrated by the high NDVI values in
the low center ponds in old vegetated drained lake basins
(see Fig. 6). The local mineralization in the ponds allows
the growth of Arctophila, increasing the productivity of
the old vegetated drained lake basins (Fig. 6a). In fact,
Fig. 4 (a) Daily total ecosystem respiration (ER) and gross
primary production (GPP), and (b) net ecosystem exchange
(NEE) (gCO2 m�2 day�1), for age-graded vegetated drained lake
basins averaged over the entire period of measurement (from
June 12 to August 28 2007, which corresponds to weeks 1–12).
Positive values indicate carbon sources, and negative values
indicate carbon sinks. Error bars represent standard error of
the mean.
1876 D . Z O N A et al.
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even though on average the NDVI of the old vegetated
drained lake basins is similar to that of the medium
vegetated drained lake basins, the highest NDVI values
were found in ponds where Arctophila occurs and the
lowest values in ice-wedge polygon rims (Fig. 6b). The
medium vegetated drained lake basins were more homo-
geneous in NDVI values (average standard deviation in
medium 0.05, and in old 0.07).
The decrease in NDVI with age is also connected to
accumulation of litter (see increase in CAI, Fig. 5d),
which covers the moss layer, increasing the shadow
fraction. The old vegetated drained lake basins con-
tained slightly less litter than the medium vegetated
drained lake basins (Fig. 5d), probably due to the higher
mineralization in ponds in old vegetated drained lake
basins (Fig. 3). The increase in litter, which tends to be
drier than living vegetation, causes old vegetated
drained lake basins to appear drier than young ones
(as shown by lower NDWI values, Fig. 2c), even when
soil water content is similar (Fig. 7).
GPP and NEE were not significantly correlated with
NDVI, when modeled over the full period of measure-
ments (July 20 to August 28). This result could be due to
the complexity of the controls on plant productivity,
particularly during the limited period of the spectral
measurements, and to the white cottony heads of E.
scheuchzeri (Fig. 2a), which at peak season decreased the
NDVI. Flowering is responsible for the lower NDVI at
10, 20, and 100 m at Young 3 on August 8 (Fig. 6b).
However, more productive young vegetated drained
Fig. 5 (a) Normalized difference vegetation index (NDVI), (b)
normalized difference nitrogen index (NDNI), (c) normalized
difference water index (NDWI), and (d) cellulose absorption
index (CAI) averaged per age-graded vegetated drained lake
basin for the entire measurement period (July 20 to August 28,
2007, which corresponds to weeks 6–12). Error bars represent
standard error of the mean.
Fig. 6 (a) Cross section of the ice-wedge polygon structure with
the low center pond of Old 1, and (b) normalized difference
vegetation index (NDVI) across a transect measured on August
7, 2007 in Med 1 and Old 1, and on August 8, 2007 in Young 3.
CHARACTERIZATION ON THE CARBON FLUXES IN THE ARCTIC COASTAL PLAIN 1877
r 2009 Blackwell Publishing Ltd, Global Change Biology, 16, 1870–1882
Page 9
lakes had higher NDVI. We used another index, NPQI,
to model primary productivity, which was able to
explain 48% of the variability in GPP (in a general linear
model, with P 5 0.004).
A linear mixed effects model was used to investigate
the differential environmental controls on NEE, GPP,
and ER in the vegetated drained lake basins during the
season. This model was used to assess the additional
impact of age and time. Because of data limitations, the
only conclusion that could be drawn was that season
had a significant impact on NEE, GPP, and ER, and that
the model could not capture the importance of the other
variables. As shown in Fig. 8, young and old vegetated
drained lake basins showed similar seasonal trends in
NEE, while medium vegetated drained lake basins
showed a lower uptake, even during peak season
(weeks 6–8). GPP in young and old vegetated drained
lake basins were similar in week 6 but not in week 8
(Fig. 8). The re-establishment of productive species in
ponds is probably responsible for the higher plant
productivity of old vegetated drained lake basins dur-
ing week 6 (Fig. 8). However, this increase did not
continue to reach the level of the young vegetated
drained lake basins (see week 8, Fig. 8, when old and
medium vegetated drained lake basins have similar
productivity). Overall, old vegetated drained lake ba-
sins’ productivity was similar to that of the medium, as
already described in the previous section (Fig. 4).
As a significant seasonal effect was observed, the
stepwise multiple regression analysis was performed
for three different periods: early, peak, and late season
(respectively, weeks 1–5, 6–8, 9–12; Table 2). NEE,
GPP, and ER were modeled in these three periods as
Fig. 7 Soil moisture (n 5 100; volumetric water content, %) for
age-graded vegetated drained lake basins averaged for the entire
measurement period (from June 12 to August 28, 2007, which
corresponds to weeks 1–12). Error bars represent standard error
of the mean.
Fig. 8 (a) Gross primary production (GPP), and (b) net ecosys-
tem exchange (NEE) in gCO2 m�2 day�1, (c) soil moisture
(VWC%), and (d) thaw depth (cm from surface) for age-graded
vegetated drained lake basins averaged over the weeks of
measurements (week 1: June 12–18; week 2: June 18–25; week
3: June 25–30; week 4: June 30–July 9; week 5: July 9–14; week 6:
July 16–24; week 8: August 1–7; week 9: August 7–13; week 10:
August 13–17; week 11: August 17–21; week 12: August 22–28).
Positive values of NEE indicate carbon sources, and negative
values indicate carbon sinks. Error bars in (c) and (d) are
standard error of the mean.
1878 D . Z O N A et al.
r 2009 Blackwell Publishing Ltd, Global Change Biology, 16, 1870–1882
Page 10
functions of several environmental variables (soil moist-
ure, thaw depth, PAR incoming and outgoing, net
radiation, air temperature, vapor pressure deficit, soil
temperature, and precipitation).
At the beginning of the season (weeks 1–5) NEE was
found to be strongly dependent on depth of thaw
(which explained about 68% of the variability in CO2
fluxes). GPP at this time was also largely explained by
the depth of thaw (which explained 60% of its varia-
bility). A model that includes the interaction term
between thaw depth and vegetated drained lake basin
age explained 84% of the variability in ER (Table 2).
Respiration increases with thaw depth, and the great-
er degree of respiration in young vegetated drained lake
basins compared with medium and older lake basins is
probably due to their higher nutrient content in soil,
denser roots, and richer microbial biomass. D. fisheri, a
dominant species in young vegetated drained lake
basins, has a shallow root system (Shaver & Billings,
1975), and would contribute to the relatively greater
proportion of belowground biomass that may exist in
the early thawed soil fraction near the surface. As a
result, in young vegetated drained lake basins, there
would be a more rapid initial increase in respiration
with thaw than in older vegetated drained lake basins.
Young vegetated drained lake basins have higher soil
moisture, which has been associated with larger heat
conductance and heat transfer in tundra soils (Pavlov,
1975; Hinzman et al., 1991), and therefore a larger depth
of thaw (Fig. 8c and d).
At peak season (weeks 6–8) soil moisture explained
70% of the variability in NEE. Thaw depth was still very
important in driving respiration rates (i.e. alone it was
able to explain 70% of the variability in ER, and a model
that included thaw depth and air temperature was able
to explain 92% of the variability in ER). During peak
season, in absence of other environmental limitations
(e.g. light availability and phenological development),
soil temperature appears to be the limiting factor on
photosynthetic process (explaining 76% of the variabil-
ity in GPP, Table 2).
Later in the season (weeks 9–12), ER was mainly
dependent on the age of the vegetated drained lake
basins (which explained 62% of the variability in ER).
Once the different vegetation communities have
reached maturity in the vegetated drained lake basins,
they are the major predictor of the respiration rates.
The senescence occurring in late summer probably
leads to the dominance of respiration over photosynth-
esis in determining GPP.
Discussion
Even though the controls on CO2 fluxes are complex
and strongly dependent on the season, the classification
of the vegetated drained lake basins according to age
(Hinkel et al., 2003) can provide very useful information
about the landscape and identify the areas with the
highest CO2 uptake. These are areas with higher plant
biomass and plant nitrogen content (NDVI, NDNI),
higher plant water content (NDWI), and lower litter
(CAI).
Medium vegetated drained lake basins had the low-
est soil moisture (Fig. 7) and more soil aeration; there-
fore they would have been expected to have the highest
soil respiration (Billings et al., 1983; Funk et al., 1994;
Oechel et al., 1998). However, ER in medium vegetated
drained lake basins was lower than in young (Fig. 4),
and similar to ER in old vegetated drained lake basins.
Probably plant biomass is a major control on the re-
spiration rates in these ecosystems, and the higher plant
biomass in the young vegetated drained lake basins
more than compensated for the depressive effects of
high soil moisture in these systems (Fig. 5a).
Notably, older vegetated drained lake basins (i.e.
those 300–2000 years old) are nearly as productive as
the medium aged vegetated drained lake basins in
terms of net carbon uptake during the growing season.
The assumption that productivity decreases with ma-
turity of the ecosystem seems not to apply to these
Arctic ecosystems, as medium and old vegetated
drained lake basins showed similar average NEE and
GPP (Fig. 4). These results support recent reports of
sustained ecosystem sequestration in older aged stands
(Paw U et al., 2004; Luo et al., 2007; Luyssaert et al.,
Table 2 Multivariable models results for the weekly averaged CO2 fluxes (gCO2 m�2 day�1) as a function of several environmental
variables during the three periods (early, peak, and late season)
Early season (weeks 1–5) Peak season (weeks 6–8) Late season (weeks 9–12)
NEE Thaw depth (R2 5 68%) Soil moisture (R2 5 70%) –
GPP Thaw depth (R2 5 60%) Soil temperature (R2 5 76%) –
ER Thaw depth� age (R2 5 84%) Thaw depth� air temp (R2 5 92%) Age (R2 5 62%)
Reported are the R2 of the models with the highest explanatory power. No variables was able to significantly explain NEE and GPP
in late season.
CHARACTERIZATION ON THE CARBON FLUXES IN THE ARCTIC COASTAL PLAIN 1879
r 2009 Blackwell Publishing Ltd, Global Change Biology, 16, 1870–1882
Page 11
2008), even in northern peatlands, more than 2000 years
old (Lafleur et al., 2003; Leppala et al., 2008).
In this study, the ability of vegetated stands to main-
tain summer biomass accumulation over millennia is
probably connected to the increased polygonization and
the development of ponds in old vegetated drained lake
basins (Fig. 3). These older stands are sites of organic
matter mineralization and re-establishment of produc-
tive plant species that tolerate water-logged soils (Fig. 6)
and benefit from increased nutrients from decomposing
peat (Billings & Peterson, 1980; Bliss & Peterson, 1992).
On a larger temporal and spatial scale, the cycling of
carbon by vegetated drained lake basins potentially
makes the ecosystem as a whole a dynamic mosaic of
carbon storage and release that is not simply described
by Odum’s hypothesis, which only includes change in
time as a driving variable. The addition of data from the
entire year would certainly change the estimate of
carbon uptake from these ecosystems (Oechel et al.,
2000; Lafleur et al., 2003) and a full year should be
included in future researches.
The research presented here suggests the importance
of microtopography in controlling primary production
and respiration in the Arctic. The development of ice-
wedge polygons and the formation of ponds, which are
sites of high NDVI (Fig. 6), increase the productivity of
these old successional stages. The strong correlation
between NDVI and NDWI suggests that the most
productive species occur in very wet areas, and these
species appear to occur in young vegetated drained lake
basins and in the low-center ponds of old vegetated
drained lake basins. Considering the importance of
water availability for plant community establishment
and carbon dynamics, permafrost degradation and
change in the hydrology in the Arctic could strongly
affect species composition, productivity, and net carbon
sequestration of the tundra.
The structure and function of the vegetation in the
drained lake basins are very susceptible to thermokarst
(the melting of ground ice in permafrost), because it
affects polygon structure. Shrinking areal extent of
ponds has been observed in areas of discontinuous
permafrost as a consequence of local thawing and
increased active layer depth, which allow increased
drainage (Yoshikawa & Hinzman, 2003; Smith et al.,
2005). Future changes in climate will, without a doubt,
have an effect, especially considering a potential in-
crease in evapotranspiration (and net decrease in soil
water content and/or water table height) in a largely
warming and drying climate (Oechel et al., 2000; Serreze
et al., 2000; Hinzman et al., 2005). In particular, the
increased active layer depth could eliminate ice-wedges
(Billings & Peterson, 1980; Bliss & Peterson, 1992) and
impact the surface drainage structure, leading to the
conversion of some wetlands to upland vegetation
types.
The comparison of the carbon fluxes of these vege-
tated drained lake basins, as well as long-term contin-
uous measurements in other tundra sites, will provide a
more accurate assessment of current Arctic tundra
carbon balance. In turn, it will also give insight into
the potential impact of drying of the Arctic on plant
communities and carbon fluxes across the heteroge-
neous landscape of the wet coastal tundra.
Acknowledgements
Funding for this study was provided by the Departmentof Energy, USA (DOE, DE-FC02-06ER64159) and from NSF(OPP-0436177). Logistic support was provided by Glenn Shee-han, BASC. We would like to thank the SDSU field crew and allthe BASC and UIC workers that helped to deploy and redeploythe multiple eddy covariance towers. This work would have notbeen possible without them. We would also like to thank CraigTweedie and Adrian Aguirre for the GPS support and KennethHinkel for proving the Landsat image and for the very helpfulsuggestion on the paper, Rommel Zulueta, Steven Hastings,Joseph Verfaillie, John Kochendorfer, George Scheer, andMichael Whiting for support during the campaign, and JeromeBraun of the Statistics Laboratory of UC Davis for the statisticsupport. We thank Ellen Abrams for the grammar and stylereview. This manuscript benefited from the input of fouranonymous reviewers.
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