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Community annotation in translational biomedical informatics: Lessons from Wikipedia Chang Feng Quo [email protected] May D Wang, Ph.D. [email protected] Pacific Symposium on Biocomputing Open Science Workshop Jan 5 th - Jan 9 th , 2009 Big Island, Hawai’i
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Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

Nov 06, 2014

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Chang Feng Quo's talk at the Open Science workshop at the Pacific Symposium on Biocomputing, Hawaii, January 5th 2009
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Page 1: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

Community annotation in translational biomedical informatics:

Lessons from Wikipedia

Chang Feng Quo [email protected] D Wang, Ph.D. [email protected]

Pacific Symposium on BiocomputingOpen Science Workshop

Jan 5th - Jan 9th, 2009Big Island, Hawai’i

Page 2: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia
Page 3: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

• What is Wikipedia?

• Lessons from Wikipedia

• The way forward

Page 4: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

What is Wikipedia?

Page 5: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

The Long Tail

Chris Anderson, Wired

Page 6: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

© Robert A. Rohde

ca. 09/07

Page 7: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

© Robert A. Rohde

ca. 09/07

Page 8: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

Crowdsourcing

Page 9: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

What is Wikipedia?

Long tail economics

Crowdsourcing

Page 10: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia
Page 11: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

Lessons from Wikipedia

• Ideological– Community access– Consensual reality– Editorial outlook

• Operational– Scalability– Data quality– Ownership

Page 12: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

Lessons from Wikipedia

• Ideological– Community access– Consensual reality– Editorial outlook

• Operational– Scalability– Data quality– Ownership

Page 13: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

Define and create community access

© 1997-2008 Brian L Dear

Page 14: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

Lessons from Wikipedia

• Ideological– Community access– Consensual reality– Editorial outlook

• Operational– Scalability– Data quality– Ownership

Page 15: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

The science of (or from?) opinion polls

© 2004 www.coxandforkum.com

Page 16: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

Lessons from Wikipedia

• Ideological– Community access– Consensual reality– Editorial outlook

• Operational– Scalability– Data quality– Ownership

Page 17: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

© Robert A. Rohde

Page 18: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

Lessons from Wikipedia

• Ideological– Community access– Consensual reality– Editorial outlook

• Operational– Scalability– Data quality– Ownership

Page 19: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia
Page 20: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

Lessons from Wikipedia

• Ideological– Community access– Consensual reality– Editorial outlook

• Operational– Scalability– Data quality– Ownership

Page 21: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

Garbage in,

Page 22: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

Lessons from Wikipedia

• Ideological– Community access– Consensual reality– Editorial outlook

• Operational– Scalability– Data quality– Ownership

Page 23: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia
Page 24: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

Lessons from Wikipedia

• Ideological– Community access– Consensual reality– Editorial outlook

• Operational– Scalability– Data quality– Ownership

Page 25: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia
Page 26: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

The way forward

Page 27: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia
Page 28: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

4 key stages of viable techs

1. Right price

2. Market share

3. Displacement

4. CommoditizeChris Anderson, Wired, www.ted.com

Page 29: Chang Feng Quo - Community annotation in translational bioinformatics: lessons from Wikipedia

Luca Cremonini