CE in the Biotechnology & Pharmaceutical Industries: 18 th Symposium on the Practical Applications for the Analysis of Proteins, Nucleotides and Small Molecules (CE Pharm 2016) Symposium Co-Chairs: Steffen Kiessig, F. Hoffmann – La Roche Ltd. Henry Luo, Regeneron Pharmaceuticals, Inc. September 25-28, 2016 The Westin San Diego San Diego, CA Organized by
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CE in the Biotechnology &
Pharmaceutical Industries:
18th Symposium on the Practical
Applications for the Analysis of
Proteins, Nucleotides and Small
Molecules
(CE Pharm 2016)
Symposium Co-Chairs:
Steffen Kiessig, F. Hoffmann – La Roche Ltd.
Henry Luo, Regeneron Pharmaceuticals, Inc.
September 25-28, 2016
The Westin San Diego
San Diego, CA
Organized by
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Table of Contents
Welcome Letter .......................................................................................................... 3
CE Pharm Award ....................................................................................................... 4
There are 13 roundtable topics. The plan is for these to be active discussions, not presentations
or lectures. To create useful discussion we are going to try and limit each topic to 10 attendees.
Seating will be on a first come, first serve basis. These discussions will include a facilitator,
whose role is to help assist the discussion and ensure a lively exchange, and a scribe, whose role
is to make general, anonymous notes about the discussion that will be posted on the CE Pharm
2016 website.
Listed below is a quick view of the Roundtable Topics, Facilitators and Scribes:
Table 1 CE-SDS: Briding Between Different Kits. Reduced vs. Non-reduced - When
to Focus on One?
Sarah Kennett, CDER, FDA
David Michels, Genentech, a Member of the Roche Group
Table 2 CE-SDS: Peak Identification
Christian Neusüß, Aalen University
Göran Hübner, Boehringer Ingelheim Pharma GmbH & Co. KG
Table 3 What are Opportunities and Challenges for Further Implementation of CE-
MS in Development of Biologics?
Michael Knierman, Eli Lilly and Company
Nathan Lacher, Pfizer, Inc.
Table 4 Chip Based Separations vs Classical CE Separations
Friederike Winkhaus, Roche Diagnostics GmbH
SungAe Suhr Park, Amgen Inc.
Table 5 Glycan Analysis by HILIC-LC or CE. Are you Doing One or Both?
Sherry Guo, Genentech, a Member of the Roche Group
C. Mark Lies, SCIEX
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Round Robin Table Discussions
Table 6 CE's Role for Challenging Analytical Problems: New Therapeutic Protein
Formats like Fusion Proteins, ADCs, Subvisible Particles, etc.
Lars Geurink, Janssen Infectious Diseases and Vaccines
Cari Sänger - van de Griend, Kantisto BV
Table 7 With Minimal Manufacturing Experience, What are Some Strategies for
Setting Quantitative Specifications for Charge Variants and Size Variants?
Richard Rustandi, Merck & Co., Inc.
Hermann Wätzig, TU Braunschweig
Table 8 Affinity Capillary Electrophoresis
Kathir Muthusamy, Regeneron Pharmaceuticals, Inc.
Mona Mozafari, TU Braunschweig
Table 9 What are the Common Strategies for Introducing New Instruments (i.e. Lab
Chip, Maurice etc.) into the a GMP Testing Environment?
Xin Jiang, ProteinSimple
Zoran Sosic, Biogen
Table 10 Do people Rely on Release Methods for Late Phase Process Characterization
or Have High Throughput Workflows in Place to Support Such Activities?
How Similar do the Product Quality have to be Between the Release and the
High Throughput Method?
Nomalie Jaya, Seattle Genetics, Inc.
Mei Han, Amgen Inc.
Table 11 QbD and DoE in CE: Nice-to-have or Need-to-have?
Peter Bryngelson, Biogen
Joel Welch, CDER, FDA
Table 12 Adsorption and Capillary Conditioning: Bare fs vs. Capillary Coating(s)
Ewoud van Tricht, Janssen Infectious Diseases and Vaccines
Gordon Freckleton, Eli Lilly and Company
Table 13 Instrument Quality, Reliability and Failure Rate
Jason Matthews, Biogen
Tim Blanc, Eli Lilly and Company
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Technical Seminars Technical Seminar/Lunch and Learn
Monday, September 26
12:25 – 13:25
Crystal Ballroom
Run Your Assays Faster: Getting the Quantitative Answers You Need For N-Glycan, CE-
SDS, and CZE Applications Without the Wait
Matt Salem
SCIEX, Brea, CA USA
Comprehensive characterization of protein therapeutics through highly quantitative data is
crucial for the biopharmaceutical industry. More importantly, the ability to gather high resolution
data while simultaneously shortening the overall analysis time has proven vital to both
biopharmaceutical companies and CROs. With the introduction of the Fast Glycan Labeling and
Analysis Kit from SCIEX, you can run glycans up to 10x faster than LC! Performing glycan
sample prep, analysis and ID on up to 96 samples can now be done in a single day. CE-SDS
analysis for molecular weight or purity determination has also been revamped to maintain 3 logs
of dynamic range (with UV detection) while cutting sample analysis time in half by utilizing the
High Speed CE-SDS method. Lastly, Capillary Zone Electrophoresis (CZE) can be utilized to
get charge heterogeneity information in just a fraction of the time it takes to run traditional cIEF
assays. These core biologics characterization applications have been optimized so that you can
get to the answers you need, faster.
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Technical Seminar/Lunch and Learn
Tuesday, September 27
11:45 – 12:45
Crystal Ballroom
Meet Maurice, One-stop cIEF and CE-SDS for your Biologics
Scott Mack, Irina Kazakova, Jiaqi Wu, Xin Jiang
ProteinSimple, San Jose, CA, USA
Analysis of a therapeutic protein by cIEF and CE-SDS is critical in establishing a product’s
identity, purity, and heterogeneity. Performing these separations traditionally requires the
implementation of both imaged and fixed window CE systems. Maurice, a next generation
analytical platform, combines both detection schemes into a single instrument, allowing cIEF or
CE-SDS data to be generated in a snap. New ready-to-go cartridge designs and automated clean
up procedures dramatically reduces system maintenance while eliminating cross-contamination
concerns. Complimenting Maurice’s streamline operation is a novel native fluorescence cIEF
detection mode capable of increasing sensitivity 3 to 5 fold over absorbance.
A comprehensive overview of the Maurice instrument family will be presented. The subjects
that will be covered include an introduction into the system’s features, insights into instrument
development, and the results from internal evaluations. Charge and size data from multiple
compounds will provide for an accurate estimation of system performance and comparability to
currently employed CE instrumentation.
Also join us in a round-table discussion with the early users of the Maurice system, and experts
from ProteinSimple, to hear about the first-hand evaluation of Maurice, and our ongoing KOL
program.
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Technical Seminar/Lunch and Learn
Wednesday, September 28
12:30 – 13:10
Diamond Room
High Throughput and High Resolution N-glycan Analysis Using Multicapillary CE and
Novel Fluorescent Dyes
Shaheer Khan
Thermo Fisher Scientific, South San Francisco, CA USA
Glycosylation is one of the key critical quality attributes of mAb based biotherapeutics.
Glycosylation changes can impact biological drug’s safety, efficacy, clearance and
immunogenicity, making it necessary to accurately detect changes. Glycan profiling begins at
cell line development and continues through process development. Current glycan analysis
methods involve laborious multistep sample preparation that takes anywhere from a day to
multiple days for 96 samples, followed by single channel LC or CE separation.
Here, we report the development of a high throughput glycan analysis method utilizing a 24
capillary polymer filled array with laser induced fluorescence detection. For glycan labeling
along with conventional APTS dye, two new rapidly reacting fluorescent dyes were developed.
Glycan cleavage, dye labeling and excess dye removal steps were streamlined for automation.
We also eliminated the toxic sodium cyanoborohydride chemistry and vacuum centrifugation
steps. Our new analysis method can analyze glycans from low glycoprotein input (< 10ug) and
provide glycan quantitation data from 96 samples in 7-9hrs with <3 hours of hands-on time.
Some of the IgG glycans that were unresolved when labeled with APTS were fully baseline
resolved when labeled with our proprietary dyes. These novel dyes on a simple streamlined
workflow in combination with a multi capillary CE instrument offer a high resolution high
throughput glycan analysis platform for rapid separation and quantitation of antibody glycans.
Our fully integrated solution of easy sample prep, high throughput instrumentation and software
can address the current unmet need of a high throughput and high resolution glycan analysis
solution.
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Poster Abstracts
Deep Dive into CE (Next 10 years)
P-101
Multiple Modes Application of Capillary Electrophoresis in Aptamers Selection Qu Feng
Beijing Institute of Technology, Beijing, China
P-102
High Resolution CE-MS Analysis of APTS-labeled Monoclonal Antibody N-glycans Andras Guttman1, Marton Szigeti2, Bryan Fonslow3 1University of Debrecen, Debrecen, Hungary, 2University of Pannonia, Veszprem, Hungary, 3TSRI, La Jolla, CA USA
P-103
Simplifying the Process Data Interpretation for Identifying and Assigning Glycan
Structures Andras Guttman1, Gabor Jarvas1, Marton Szigeti2, Jeff Chapman3 1University of Debrecen, Debrecen, Hungary, 2University of Pannonia, Veszprem, Hungary, 3SCIEX, Brea, CA USA
P-104
Potential Interferences of Ampholytes to Imaged Capillary Electrophoresis (iCE) Testing
of mAb and ADC Xiaoping He1, Jianming Jim Mo2 1Pfizer, Inc., St Louis, MO USA, 2Pfizer, Inc., Chesterfield, MO USA
P-105
A Novel Nanospray Liquid Junction Interface for Versatile CE-MS Jana Krenkova1, Rob Haselberg2, Govert W. Somsen2, Frantisek Foret1 1Institute of Analytical Chemistry, v. v. i., Brno, Czech Republic, 2Vrije Universiteit Amsterdam,
Amsterdam, Netherlands
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Method Lifecycle Development
P-106
Method Development of an icIEF Method for the Replacement of a Pre-cast IEF Gel
System within an Analytical Method Lifecycle Franziska Hübner, Frederic Zoller
Validating a New Quantitative CE method for a Marketed Recombinant Protein Product
to Support Control System Updates Liang Jia
Genentech, a Member of the Roche Group, South San Francisco, CA USA
P-108
Development and Evaluation of Fast Charge Heterogeneity Methods for Monoclonal
Antibodies and New Modalities Maria Eleanor Le, Jeremy Primack, Lan Li, SungAe Suhr Park, Tzu-Chin Chen, Chao-Hsiang
Wu
Amgen Inc., Thousand Oaks, CA USA
P-109
Implementation of Capillary Electrophoresis for Viral Vaccine Development Support in a
GMP Environment Lars Geurink1, Ewoud van Tricht1, Cari Sänger – van de Griend2 1Janssen Infectious Disease and Vaccines, Leiden, Netherlands, 2Kantisto BV, Baarn,
Netherlands
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Novel Technologies (Next 5 years)
P-110
Flow Induced Dispersion Analysis (FIDA) as a Novel Technology for Protein
Quantification in Plasma and for Probing Immune Responses in Patients Nicklas N. Poulsen1, Morten E. Pedersen1, Jesper Østergaard1,2, Nickolaj J. Petersen1, Niels H.
H. Heegaard3, Henrik Jensen1,2 1University of Copenhagen, Copenhagen, Denmark, 2FIDA-Tech Aps, Roskilde, Denmark, 3Statens Serum Institut, Copenhagen, Denmark
P-111
Flow Induced Dispersion Analysis for Probing non-Covalent Interactions and Quantifying
Large Biomolecules: A New Approach to Ligand Binding Assays Nicklas N. Poulsen1, Jesper Østergaard1,2, Nickolaj J. Petersen1, Henrik Jensen1,2 1University of Copenhagen, Copenhagen, Denmark, 2FIDA-Tech Aps, Roskilde, Denmark
P-112
Automated cIEF Sample Preparation by Maurice On-Board Mixing Jessica Dermody, Lekha Priya, Annegret Boge, Scott Mack
ProteinSimple, San Jose, CA USA
P-113
Application of Optimized Microchip-Based Electrophoresis for Monoclonal Antibody
Product Quality Analysis Ya Fu, Jun Xu, Ming Zeng, Tapan Das
Bristol-Myers Squibb Company, New Brunswick, NJ USA
P-115
Evaluation of a Novel Instrumentation for Capillary Electrophoresis-Sodium Dodecyl
Sulfate (CE-SDS) Analysis for Antibody-Drug Conjugates Natalie Jones, Nomalie Jaya, Oscar Salas-Solano
Seattle Genetics, Inc., Bothell, WA USA
P-116
An Integrated System for High-throughput, User-friendly N-Glycan Analysis Using Rapid
Separation by Capillary Electrophoresis Michael Kimzey, Andres Guerrero, Aled Jones, John Yan, Zoltan Szabo, Shirley Ng, Alexander
NGS Library Validation by an Automated Capillary Gel Electrophoresis Alice Lin, Jemmie Chang, Eric Tsai, Varouj Amirkhanian
BiOptic Inc., Taipei, Taiwan
P-119
Detection of Microsatellite Instability in Colorectal Cancer by an Automated Capillary Gel
Electrophoresis Alice Lin, Varouj Amirkhanian, Eric Tsai
BiOptic Inc., Taipei, Taiwan
P-120
Rapid and Simple Sample Preparation for High Throughput and High Resolution Glycan
Analysis by Capillary Electrophoresis Jenkuei Liu, Shaheer Khan, Bharti Solanki
Thermo Fisher Scientific, South San Francisco, CA USA
P-121
cIEF and CE-SDS Characterization of NISTmAb by Maurice Scott Mack, Irina Kazakova, Annegret Boge, Jessica Dermody
ProteinSimple, San Jose, CA USA
P-122
Real-time Assay Optimization on a Microfluidic Platform for Pharmaceutical Analysis Anubhav Tripathi1, David Weinberger1, Jingjing Wong2, Derek Troiano2, I-Jane Chen2, Wael
Yared2, Jim Hudson2, Laurel Provencher2 1Brown University, Providence, RI USA, 2PerkinElmer, Hopkinton, MA USA
P-123
Multilevel Characterization of Monoclonal Antibodies using Microfluidic CE-MS
Technology Erin Redman, Joshua Guerrette, Scott Mellors
908 Devices, Inc., Carrboro, NC USA
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P-124
Evaluating the Imaged Capillary Isoelectric Focusing (icIEF) Capabilities of a Novel
Instrumentation for Antibody-Drug Conjugates Kevin Strozyk, Nomalie Jaya, Oscar Salas-Solano
Seattle Genetics, Inc., Bothell, WA USA
P-125
Evaluation of Microchip HT Capillary Electrophorsis Assays for QC testing - a Multi-site
Ring Trial Friederike Winkhaus
Roche Diagnostics GmbH, Penzberg, Germany
P-126
Capillary Isoelectric Focusing with Intrinsic Fluorescence Whole-Column Detection Jiaqi Wu
ProteinSimple, Toronto, ON Canada
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Protein Analysis and Emerging Therapeutics
P-127
Optimization of Denaturation Conditions in a Reducing Microfluidic Capillary Gel
Electrophoresis Purity Assay for an IgG1 Monoclonal Antibody Troy Adams
GlaxoSmithKline, King of Prussia, PA USA
P-128
High Sensitivity CZE-ESI-MS Investigations and Applications Emily Amenson1, Liangliang Sun2, Norman Dovichi1 1University of Notre Dame, Notre Dame, IN USA, 2Michigan State University, East Lansing, MI
USA
P-129
Comparative mAb Charge Heterogeneity Assays by CESI-MS and CZE/cIEF-UV Analyses Steve Lock1, Edna Betgovargez2, Bryan Fonslow3, Ying Zhang4, Olga Friese4, K. Steven Cook4,
John Yates III5, Jason Rouse6 1SCIEX, Warrington, UK, 2SCIEX, Brea, CA USA, 3SCIEX Separations, San Diego, CA USA, 4Pfizer, Inc., Chesterfield, MO USA, 5The Scripps Research Institute, La Jolla, CA USA, 6Pfizer,
Inc., Andover, MA USA
P-130
A Pretreatment Approach to Characterize Complex Fc-based Fusion Proteins through CE-
SDS Paras Bhatia
Takeda Pharmaceuticals, Cambridge, MA USA
P-131
Method Development and Characterization of Fusion Protein using Imaged Capillary
Johnie Young1, Jenkuei Liu1, Baburaj Kunnummal1, Steve Gorfien2 1Thermo Fisher Scientific, South San Francisco, CA USA, 2Thermo Fisher Scientific, Grand
Island, NE USA
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P-133
Evaluation of the ProteinSimple Maurice System for Reduced and Non-reduced CE-SDS
Applications Mee Ko, SungAe Park, Lan Li, Jeremy Primack, Tzu-Chin Chen, Chao-Hsiang Wu
Amgen Inc., Thousand Oaks, CA USA
P-134
Effects of Denaturants and Stabilizers in the Analysis of Charge Variants of Monoclonal
Antibodies using Imaged Capillary Isoelectric Focusing Wenkui Lan, Mary Krause, Ronak Shah, Kathleen Kelly, Mark Bolgar, Rajesh Gandhi
Bristol-Myers Squibb Company, New Brunswick, NJ USA
P-135
Why Light and Peroxide Stress Cause Increase in Acidic Species and Decrease in Protein
Unfolding Temperature Ning Li, Dipali Patel, Christopher Shaw, Anil Kumar Meda Kavadi, June Kim, Luke Bergerud,
Derek Schildt
AstraZeneca, Frederick, MD USA
P-136
Capillary Gel Electrophoresis as a Tool for Purity Profiling of Bispecific Monoclonal
Antibodies Jasna Maksimoska
Janssen Pharmaceutical R&D, LLC, Malvern, PA USA
P-137
Development of an Imaged Capillary Isoelectric Focusing (icIEF) Denatured and Reduced
Method to Analyze Charge Heterogeneity of a Multi-domain Complex Glycoprotein Janette Mathis, Byron Kneller, Michelle A. Emrick
CMC Biologics, Bothell, WA USA
P-138
Innovator and Biosimilar Monoclonal Antibody-Peptide Map Analysis Using Capillary
Electrophoresis and Comparison Using Chromatograph Comparison Software Arunkumar Padmanaban1, Michael Yap2 1Agilent Technologies India Pvt Ltd, Bangalore, India, 2Agilent Technologies, Santa Clara, CA
USA
P-139
A Platform DoE Approach for Non-Reducing CE-SDS Method Development for mAbs Irina Perdivara, Clara Smith, Greg Adams
FUJIFILM Diosynth Biotechnologies, Morrisville, NC USA
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P-140
Complementarity Study of the N-linked Glycosylation of a Development-Phase
Therapeutic Glycoprotein Laura Salmeron1, Andras Guttman2, Anghel Jimenez1, Shiping Fang1 1Halozyme Therapeutics, San Diego, CA USA, 2University of Debrecen, Debrecen, Hungary
P-141
Analytical Characterization of Protein-Polymer Conjugates Used for Long Acting Delivery
Ocular Therapeutics Cinzia Stella
Genentech, a Member of the Roche Group, South San Francisco, CA USA
P-142
Novel CZE Method for Quantification of Intact Virus Particles in Complex Matrices –
Quality by Design method development Ewoud van Tricht1, Lars Geurink1, Cari Sänger – van de Griend2 1Janssen Infectious Diseases and Vaccines, Leiden, Netherlands, 2Kantisto BV, Baarn,
Netherlands
P-143
Quantitative CE-MS Glycomics Using Twoplex Stable Isotope Labelling Csaba Varadi, Stefan Mittermayr, Silvia Millán-Martín, Jonathan Bones
NIBRT, Dublin, Ireland
P-144
The Effect of Histidine Formulation Buffer on the Profile and Apparent Isoelectric Point of
Therapeutic Proteins Analyzed by Imaged Capillary Isoelectric Focusing Chao-Yu Chen, Edward Wang, Brad Hayes
OncoMed Pharmaceuticals, Redwood City, CA USA
P-145
A Theoretical Model for Correlation of Non-Glycosylated Heavy Chain Detected by
Conventional CESDS and Micro-Chip Based Electrophoresis Jun Xu, Ya Fu, Ming Zeng, Tapan Das
Bristol-Myers Squibb Company, New Brunswick, NJ USA
P-146
Middle-down Proteolysis with Imaged Capillary Isoelectric Focusing and Capillary Gel
Electrophoresis for Domain-specific Characterization of Innovator and Generic Rituximab Zichuan Zhang, Julia Ding, Ronel Perrault, Yun Zhao
PPD, Middleton, WI USA
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Regulatory
P-147
Examination of Interferon Alpha-2 Charged Variants and Assessment of the Active
Ingredients Integrity in Finished Products using Capillary Electrophoresis and High
Performance Liquid Chromatography Simon Sauve
Health Canada, Ottawa, ON Canada
P-148
Standard Test Methods Based on Capillary Electrophoresis Xinying Zhao
Beijing Centre for Physical & Chemical Analysis, Beijing, China
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Small Molecule
P-149
Exploring the Capabilities of Capillary Electrophoresis in Solving Difficult Separations for
Small and Large Molecules Van Truong
Merck & Co., Inc., Rahway, NJ USA
P-150
Ultrasensitive Determination of 5-methylcytosine and 5-hydroxymethylcytosine in Genomic
DNA by Sheathless Interfaced CE-MS Fang Yuan1, Xiao-Hui Zhang1, Ji Nie1, Hong-Xu Chen2, Ying-Lin Zhou1, Xin-Xiang Zhang1 1Peking University, Beijing, China, 2Sciex Co (Shanghai), Beijing, China
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Young Scientist
P-151
Simultaneous Determination of Protein Affinity and Heterogeneity by Capillary
Electrophoresis–mass spectrometry
Rob Haselberg1, Elena Domínguez Vega1, Gerhardus J. de Jong2, Govert W. Somsen1 1Vrije Universiteit Amsterdam, Amsterdam, Netherlands, 2Utrecht University, Utrecht,
Netherlands
P-152
Investigating the Concentration-dependant Binding of Heparinoids to Albumins using
Affinity Capillary Electrophoresis Mona Mozafari
TU Braunschweig, Braunschweig, Germany
P-153
Affinity Capillary Electrophoretic and Computational Methods for Binding Studies of P-
selectin with Heparinoids Mona Mozafari
TU Braunschweig, Braunschweig, Germany
P-154
Capillary Zone Electrophoresis-electrospray Ionization-Mass Spectrometry for Xenopus laevis
Metabolomic Analysis
Nicole M. Schiavone, Jennifer Arceo, Danielle A. Boley, Elizabeth Peuchen, Norman J. Dovichi
University of Notre Dame, Notre Dame, IN USA
P-155
Coupling Capillary Zone Electrophoresis to a Q Exactive HF Mass Spectrometer for Top-
down Proteomics: 580 Proteoform Identifications from Yeast Yimeng Zhao, Liangliang Sun, Guijie Zhu, Norman Dovichi
University of Notre Dame, Notre Dame, IN USA
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Late Breaking
LB-01
CE-SDS Validation Challenges in Quality Control
Cheryl Lovato, Koman Joe, Jennifer Moore, Lisa Stefanich
Genentech, a Member of the Roche Group, South San Francisco, CA, USA
LB-02
Capillary Electrophoresis – Mass Spectrometry for Top Down Proteomics in Food And
Clinical Studies
Andreas Krupke1, Chien-Hsun Chen2, Shiaw-Min Chen1, Achim Karger1, Steve Williams1,
Michael Wenz1, Daniel Lopez-Ferrer2 and Aran Paulus2 1Thermo Fisher Scientific, South San Francisco, CA USA, 2Thermo Fisher Scientific, San Jose,