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BRENDA Tutorial Ligand Search
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BRENDA Tutorial · BRENDA Chemical structure of vanillic acid - Mozilla Fir BRENDA vanillic acid earch again for vanillic, acid Searc) hemical structure of vanillic acid HO go to...

Oct 13, 2020

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Page 1: BRENDA Tutorial · BRENDA Chemical structure of vanillic acid - Mozilla Fir BRENDA vanillic acid earch again for vanillic, acid Searc) hemical structure of vanillic acid HO go to...

BRENDA TutorialLigand Search

Page 2: BRENDA Tutorial · BRENDA Chemical structure of vanillic acid - Mozilla Fir BRENDA vanillic acid earch again for vanillic, acid Searc) hemical structure of vanillic acid HO go to...

How to find ligands / metabolites such assubstrates, products, inhibitors etc.

Substances interacting with enzymes

Page 3: BRENDA Tutorial · BRENDA Chemical structure of vanillic acid - Mozilla Fir BRENDA vanillic acid earch again for vanillic, acid Searc) hemical structure of vanillic acid HO go to...

Enter the ligand name ora part of it and performthe search

Page 4: BRENDA Tutorial · BRENDA Chemical structure of vanillic acid - Mozilla Fir BRENDA vanillic acid earch again for vanillic, acid Searc) hemical structure of vanillic acid HO go to...

Choose „Ligands“ to display theenzyme-related information on vanillic acid

Page 5: BRENDA Tutorial · BRENDA Chemical structure of vanillic acid - Mozilla Fir BRENDA vanillic acid earch again for vanillic, acid Searc) hemical structure of vanillic acid HO go to...

The result page shows all enzymesinteracting with the ligand, including

their derivatives, and their roles

Page 6: BRENDA Tutorial · BRENDA Chemical structure of vanillic acid - Mozilla Fir BRENDA vanillic acid earch again for vanillic, acid Searc) hemical structure of vanillic acid HO go to...

you can displaythe molecularstructure

Page 7: BRENDA Tutorial · BRENDA Chemical structure of vanillic acid - Mozilla Fir BRENDA vanillic acid earch again for vanillic, acid Searc) hemical structure of vanillic acid HO go to...

On the next page you getbasic information on theLigand Summary Page with…

Page 8: BRENDA Tutorial · BRENDA Chemical structure of vanillic acid - Mozilla Fir BRENDA vanillic acid earch again for vanillic, acid Searc) hemical structure of vanillic acid HO go to...

…more detailed informationon the structure, synonyms, and their roles in theenzyme-ligand interaction, enzyme kinetic parameters, and references in BRENDA

Page 9: BRENDA Tutorial · BRENDA Chemical structure of vanillic acid - Mozilla Fir BRENDA vanillic acid earch again for vanillic, acid Searc) hemical structure of vanillic acid HO go to...

you can directly switch to the„Substructure Search“ to find

similar ligands interacting withenzymes in BRENDA

Page 10: BRENDA Tutorial · BRENDA Chemical structure of vanillic acid - Mozilla Fir BRENDA vanillic acid earch again for vanillic, acid Searc) hemical structure of vanillic acid HO go to...

On the result page all ligandsstructurally similar to the

searched ligand are displayed

Page 11: BRENDA Tutorial · BRENDA Chemical structure of vanillic acid - Mozilla Fir BRENDA vanillic acid earch again for vanillic, acid Searc) hemical structure of vanillic acid HO go to...

If you find an appropriateligand, you can perform a search in BRENDA to getmore information

Page 12: BRENDA Tutorial · BRENDA Chemical structure of vanillic acid - Mozilla Fir BRENDA vanillic acid earch again for vanillic, acid Searc) hemical structure of vanillic acid HO go to...

On the result page youfind further details ofthe searched ligand

Page 13: BRENDA Tutorial · BRENDA Chemical structure of vanillic acid - Mozilla Fir BRENDA vanillic acid earch again for vanillic, acid Searc) hemical structure of vanillic acid HO go to...

Otherwise you could perform a new Substructure Search by

drawing the molceular structurewith the editor and choosingappropriate search options.