Accessing the original observation data captured during plant exploration missions for collecting crop diversity Bioversity International, Via dei Tre Denari 472/a, Maccarese, Rome, Italy Hannes Gaisberger, Massimo Buonaiuto, Federico Mattei, Andrea De Pirro, Valentina Barbiero, Simone Mori, Imke Thormann, Tom Hazekamp, Elizabeth Arnaud
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Bioversity International, Via dei Tre Denari 472/a, Maccarese, Rome, Italy
Accessing the original observation data captured during plant exploration missions for collecting crop diversity. Bioversity International, Via dei Tre Denari 472/a, Maccarese, Rome, Italy - PowerPoint PPT Presentation
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Accessing the original observation data captured during plant exploration missions for collecting crop diversity
Bioversity International, Via dei Tre Denari 472/a, Maccarese, Rome, ItalyHannes Gaisberger, Massimo Buonaiuto, Federico Mattei, Andrea De Pirro, Valentina Barbiero, Simone Mori, Imke Thormann, Tom Hazekamp, Elizabeth Arnaud
Agenda
• Part 1: Safeguarding the original paper documents by scanning and digitizing the data – Hannes Gaisberger
• Part 2: Creation of a public repository of full scanned documents enabling access to the full text – Massimo Buonaiuto
• Since 1974, Bioversity International has supported more than 550 germplasm collecting missions yielding 225,875 samples and covering 4,300 species from 137 countries
• Samples were sent to several genebanks worldwide for safety duplication, conservation and potential distribution
• Other CGIAR centers organized various collecting missions for their mandate crops
Elisabeth Arnaud
add photos of crop s or ladnscape and nice maps showing crop diveristy from Andy
Original observation data is essential for:
• Identify duplicates between collections and gaps in diversity – value for genebank curators and collecting actions
• Tracking original sample & country of origin in pedigrees – value for Breeders and Benefit Sharing
• Collectors recorded key sample information (passport data) and other observation data in field books
Scanning of field notebooks and related documents
Original observation: a treasure for genebanks and breeders
• Genus and Species
• Collecting Number
• Site Information: Admin boundaries, Latitude, Longitude and Elevation
• Collecting Source and Sample Status
The collecting form contains the botanical classification along with localization details, environment, cultural practices, diseases and pest presence and symptoms and traditional uses
Identification and quality-checking in databases
• Different publicly available genebank inventories are checked in order to track corresponding samples and complete missing passport data
Integration of quality passport data
• Data extracted from field books and databases is integrated in a sample level database of collecting missions
Results in figures
• To date, the quality of 101,171 passport data records from 375 collecting missions has been improved through data extracted from scanned documentation
• 56,454 of these collected samples are linked to genebank accessions in 51 institutes worldwide
• A total of 43,637 scanned pages are saved as 1063 pdf-files and stored in an online repository aside the 26,000 other files scanned by CGIAR centers and partners
Publishing the data and attached information
• End of 2010: work must be finished for Bioversity supported missions
• Full text available on the online repository and publish the collection mission database
• Visualization: Map sites where diversity was collected (after georeferencing with Biogeomancer)
• Various projects to address gaps analysis and diversity analysis, like Genesys, encourage partners to perform same work and share the full text and data – links to CWR information, Museum herbaria information, Literature
Public access to the scanned collecting missions documents
A Repository that presently contains 27,000 Collecting Missions Files from CGIAR Centers and partners:• Agricultural Research Centre (ARC) of Lao People’s
Democratic Republic • AfricaRice• Agricultural Research for Development in Africa (IITA)• Bioversity International• International Rice Research Institute (IRRI)
Typology of the documents produced by Collectors
1) Mission Reports2) Summary Forms3) Sample lists4) Collecting Forms5) Accession Vouchers 6) Newsletters7) Factsheets8) Distribution lists9) Field Books