www.elixir-europe.org ELIXIR All Hands 2017, 21-23 March, Rome, Italy BioSharing: standards, databases, policies Susanna-Assunta Sansone @biosharing
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www.elixir-europe.org
ELIXIR All Hands 2017, 21-23 March, Rome, Italy
BioSharing: standards, databases, policiesSusanna-Assunta Sansone
@biosharing
BioSharing: a resource of the ELIXIR Interoperability Platform
• Aweb-based,curatedandsearchableportalthat monitorsthe
development andevolution ofstandards,theiruse in
databases andtheadoptionofbothindatapolicies,
toinform andeducate
Complex and evolving landscape
Data policies by funders, journals and other organizations
Databases, tools and services
Content standards
Formats Terminologies Guidelines
Complex and evolving landscape
Data policies by funders, journals and other organizations
Databases, tools and services
Content standards
Formats Terminologies Guidelines
By grass-rootsgroups, e.g.:
By standard organizations, e.g.:
Content standards
Data policies by funders, journals and other organizations
Databases, tools and services
Formats Terminologies Guidelines
Since 2011 BioSharing works to map this landscape
MIAMEMIRIAM
MIQASMIXMIGEN
ARRIVEMIAPE
MIASE
MIQE
MISFISHIE….
REMARK
CONSORT
SRAxml
SOFT FASTADICOM
MzMLSBRML
SEDML…
GELML
ISA
CML
MITAB
AAOCHEBIOBI
PATO ENVOMOD
BTOIDO…
TEDDY
PRO
XAO
DO
VO
MIAPPESample-Tab
Helping users make
the right decision
Not just quantity but quality:
rich, curated and community
vetted descriptions
Indicators to describe the status of standards and databases
Readyforuse,implementation,orrecommendation
Indevelopment
Statusuncertain
Deprecatedassubsumedorsuperseded
Manuallycuratedandverifiedbythecommunitybehindeachresource
Tracking evolution, e.g.:
Working with/for the community and our ‘adopters’, e.g.:
Standard developing groups:Journal, publishers:
Cross-links, data exchange:
Societies and organisations: Institutional RDM services:
Projects, programmes: 533
responders
Progressively cross-linking with other ELIXIR resources
Standard developing groups:Journal, publishers:
Cross-links, data exchange:
Societies and organisations: Institutional RDM services:
Projects, programmes:
Visualizing relations, e.g.:
DataPolicyListoftheir
recommendeddatabasesandstandards
…to inform and educate on existing and new resources
DataPolicy
Acknowledgements
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