11/21/10 1 1 Biological Membranes and Transport Lehninger 3 rd ed. Chapter 12 2 Biological membranes • Membranes form the external boundaries of cells. • As such they represent the communication posts of the cell with the world. • In eukaryotic organisms they also define several different internal compartments. • Membranes are selectively permeable to a large number of chemicals. • About 30% of the proteins in our genome reside in the membrane. 3 Cilium Mitochondrion Endoplasmic reticulum Secretory vesicle Cell body Digestive vacuole
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Biological Membranes and Transport
Lehninger 3rd ed. Chapter 12
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Biological membranes • Membranes form the external boundaries of cells. • As such they represent the communication posts
of the cell with the world. • In eukaryotic organisms they also define several
different internal compartments. • Membranes are selectively permeable to a large
number of chemicals. • About 30% of the proteins in our genome reside in
13 Membrane proteins diffuse in the bilayer as well (but slower) unless they are prevented.
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What are membrane proteins? • There is a simple operative definition for a membrane
protein: When you centrifuge down membranes, does your protein precipitate? If it does than it a membrane protein.
• If you need only salt to make it soluble, then the protein is a peripheral membrane protein.
• If you need to add an agent that destroys the bilayer (e.g. detergent or an organic solvent) in order to solubilize the protein, then you can safely state that your protein is an integral membrane protein.
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• Integral membrane proteins
• can be of two varieties: 1. A lipid moiety
covalently bound to the protein: (e.g. isoprene, fatty acid PI).
2. The protein its self traverses the lipid bilayer.
• Very few proteins can be both water and membrane soluble.
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Integral membrane proteins • Integral membrane proteins reside in the lipid
bilayer that is very hydrophobic and, has no groups capable of H-bonding.
• Therefore the protein must: – Self-satisfy its H-bonding potential. – Contain hydrophobic amino acids to face the
lipid bilayer. • The 2 most common ways that this is achieved, is
by forming α-helical bundles and β-barrels.
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α-helical membrane proteins
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Bacteriorhodopsin: a light driven H+ pump.
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Photosynthetic reaction center: the source of life on earth!
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Topology prediction of membrane proteins
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β-barrel ���(a.k.a porins)
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Integral membrane proteins are highly abundant and highly important
• Highly abundant: 20-30% of our genomes code for membrane proteins.
• Highly important for biomedicine: >80% of all drugs target membrane proteins.
• Dramatically underrepresented in the protein structural data base due to experimental difficulties in determining their structures.
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Membrane fusion and fission • Membrane fusion is the process in which two opposing
membranes are joined into one contiguous membrane. • The proteins that reside in the membrane retain their
relative orientations in biological fusion. In “synthetic” fusion events proteins tend to get “randomized”.
• There is no leakage of ions or any other small compounds in biological fusion.
• Fission is simply the reverse of fusion. • Both fusion and fission are exceptionally common events
in biology.
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Solute transport across membranes
• The permeability of the membrane is modified by the presence of a huge number of unique proteins that can be divided into 3 general classes. – Channels. – Facilitators. – Pump.
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Channels • Mostly selective holes that allow very small
molecules (e.g. ions and water) to traverse the lipid bilayer according to their electro-chemical potentials.
• The flux can be of the order of 107 molecules per second.
• How can such a flux be maintained alongside specificity?
• Ion fluxes are the way in which electrical signal are transmitted in the body.
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Facilitators
• Proteins that allow relatively larger molecules (e.g. sugars, amino acids bicarbonate) to traverse the lipid bilayer according to their electrochemical gradient are called Facilitators, or transporters.
• Some work by allowing more than 1 molecule to traverse the bilayer at once.
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Active transport via pumps
• In some instances proteins can “move” a molecule across the membrane against its electro-chemical gradient.
• For example [Ca2+] in the cytoplasm is ~0.1µM but in the ER lumen and in the extra-cellular media is ~1mM.
• Thus, there must be an active transport of across the membrane.