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Biochemical studies on animal models of ceroid-lipofuscinoses

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Page 1: Biochemical studies on animal models of ceroid-lipofuscinoses

Copyright is owned by the Author of the thesis. Permission is given for a copy to be downloaded by an individual for the purpose of research and private study only. The thesis may not be reproduced elsewhere without the permission of the Author.

Page 2: Biochemical studies on animal models of ceroid-lipofuscinoses

This thesis is dedicated to my darl ing mama and dada

Page 3: Biochemical studies on animal models of ceroid-lipofuscinoses

BIOCHEMICAL STUDIES ON ANIMAL MODELS OF

CEROID-LIPOFUSCINO

By

RYAN DENNIS MARTINUS

A thesis presented In partial

fulfilment of the requirements for

the degree of

DOCTOR OF PHILOSOPHY IN VETERINARY PATHOLOGY

Massey University

1 990

Page 4: Biochemical studies on animal models of ceroid-lipofuscinoses

11

ABSTRACT

The ceroid-lipofuscinoses are recessively inherited lysosomal storage

diseases of children and animals, characterised by brain and retinal

atrophy and the accumulation of lipopigment in a variety of cells. A

systematic study of isolated lipopigment from an ovine form of the

disease had shown the major stored components to be proteinaceous.

This thesis presents further characterisation and identification of the

stored ovine lipopigment proteins. Separation of the lipopigment proteins

by LDS-PAG E showed the presence of the 3 .5 kDa and 14.8 kDa

proteins noted in earlier studies, and an additional band at 24 kDa. The

14.8 and 24 kDa bands varied between preparations and from different

gels of the same isolate. Radioiodination of lipopigment and silver

staining of the proteins separated by LDS-PAGE indicated that the 3.5

kDa protein was the dominant protein component. As these proteins

were unable to be separated from each other, exploitation of the molar

dominance of the 3 . 5 kDa protein led to its identification by a non

traditional sequencing approach. The major stored protein was shown to

be the full proteolipid subunit c of the mitochondrial ATP synthase

complex. The 14.8 and 24 kDa proteins were shown to be stable

oligomers of subunit c. Quantitaion of the sequence data showed that

subunit c accounted for at least 50% of the lipopigment mass. No other

mitochondrial protein was detected. Analyses of isolated mitochondria

showed that they were functionally normal and did not contain excess

amounts of subunit c.

Subunit c is classified as a proteolipid, due to its lipid-like solubility in

chloroform/methanol mixtures . Its storage in lysosome derived

l i popig m en t bodies explained many of the described physical

characteristics of lipopigment in the ceroid-lipofuscinoses.

Application of the same methodology showed that a bovine, and two

distinct canine forms of the ceroid- lipofuscinoses were also subunit c

storage diseases.

lt is postulated that the lesions in the ceroid-lipofuscinoses involve

defects in the degradative pathway of subunit c at some point after its

incorporation into the inner mitochondrial membrane.

Page 5: Biochemical studies on animal models of ceroid-lipofuscinoses

Ill

ACKNOWLEDGEMENTS

I would like to express my sincere thanks to my chief supervisor Prof. R.

D. Jolly for giving me the opportunity to undertake this study, and for

providing the resources that enabled its completion. His attention to

detail and encouragement during the thesis production, was greatly

appreciated. I am also indebted to my other supervisors Dr. D. N.

Palmer and Dr. G. G. Midwinter. Dr. Palmer advised and helped with the

critical assessment of the experimental work. Dr. Midwinter supervised

the sequencing studies and helped with various aspects of protein

chemistry.

I would like to acknowledge the assistance, and thank a number of

people within the Department of Veterinary Pathology and Public Health

and other departments at Massey University as well as other research

institutions for their help with various aspects of the work presented in

this thesis. In particular; Mr. J. Reid from the Department of Chemistry

and Biochemistry at Massey University for the numerous amino acid

analyses and sequence runs, Dr. J. G. Shaw from the Biotechnology

Division, Department of Scientific and Industrial Research, Palmerston

North for doing the mass spectral analyses, Dr. I. M. Fearnley, Dr. J. M.

Skehel and Dr. J. E. Walker at the M. R. C. Laboratory of Molecular

Biology, Hills Road, Cambridge, U. K. for sequencing the PVDF blots, Mr.

K.B. Kirkland and Ms. I. Dopfmer for doing the negative staining electron

microscopy and the post mortems, Prof. R. D. Jolly, Dr. S. Cooper and

Mr. F . Sharpe also helped with the post mortems. I would also like to

thank Dr. M. Saifuddin for his help and advice during setting up of the

kidney cell cultures, Ms. S. L. Bayliss for assisting with the oxidative

phosphorylation measurements and her general technical help in the

laboratory, Mrs. P. Slack and Mrs. P. Davey for the preparation of

material for electron microscopy, and to Mr. T. Law for the production of

the thesis photographs. A very special thank you to my wife Nic, for

proof reading the thesis and for enduring through it all.

The work was supported by the United States National Institute of

Neurological and Communicative Disorders and Stroke Grant NS 1 1 238.

Page 6: Biochemical studies on animal models of ceroid-lipofuscinoses

lv

PUBLICATIONS

Palmer, D. N. , Martinus, R. D. , Barns, G., Reeves, R. D. and Jolly, R. D.

( 1 988) . Ovine ceroid-lipofuscinosis 1: Lipopigment composition is

indicative of a lysosomal proteinosis. Am. J. Med. Genet. , Supp/.5

1 41 - 1 58.

Palmer, D. N. , Martinus, R. D. , Cooper, S. C., Midwinter, G. G . , Reid, J.

C. and Jolly, R. D. ( 1 989 ) . Ovine ceroid-lipofuscinosis: The major

lipopigment protein and the lipid-binding subunit of mitochondrial

ATP synthase have the same NH2-terminal sequence. J. Bioi.

Chem. 264(1 0) 5736-5740

Jolly, R. D. , Martinus, R. D. , Shimada, A. , Fearnley, I. M. and Palmer, D.

N. ( 1 990) . Ovine ceroid-lipofuscinosis is a proteolipid proteinosis.

Can. J. Vet. Res. 54 1 5-2 1 .

Fearnley, I. M. , Walker, J. E. , Martinus, R. D., Shaw, G. J. , Kirkland, K.

B., Jolly, R. D. and Palmer, D. N. ( 1 990) . The sequence of the

major protein stored in ovine ceroid lipofuscinosis is identical with

that of the dicyclohexylcarbodi-imide-reactive proteolipid of

mitochondrial ATP synthase. Biochem. J. 268 751 -758.

D., Bayliss, S. L., Jolly, R. D. , Hall, N. A. , Lake, B. D. and Wolfe, L.

S�, :t�aQ) .-��_ap��- · .:_ttle.J)QC���Qlj); -·�9W- . _'d: . -:'. . . . . .. •. . ... .... • ..,. :'t

slibtrn1t"OMtr1fO'cho1m'Piar�TP'""Sytitl'ia'Se i'n""tmm-a'fi;:ifrct Ov1� ._er -lipofuscinoses. In Lipofuscin And Ceroid Pigments (Ed. Porta, E.

Jolly, R . D. , Martinus, R. D. and Palmer, D. N. ( 1 990) . The ovine and

other models of ceroid-lipofuscinosis: Their relevance to Batten's

disease. Am. J. Med. Genet. (In Press).

Page 7: Biochemical studies on animal models of ceroid-lipofuscinoses

V

Marti nus, R. D. , Harper, P . A. W., Jol ly, R. D. , Bayliss, S . L. , Midwinte r,

G . G . , Shaw , G. J . and Pa lmer, D. N. ( 1 990) . Bovi ne cero id­

l ipofusci nosis (Batten's disease ) : The major species stored is the

D C C D - react ive proteo l i p id , subun it c, of mitoc h o nd ri a l ATP

synthase. (Submitted) .

Page 8: Biochemical studies on animal models of ceroid-lipofuscinoses

vi

TABLE OF CONTENTS

Page

ABSTRACT .•.........•..•.......•...•••......•••..•.•...••...•.•....•..••...............•........................•............. I I ACKNOWLEDGEMENTS •.••••••••••.•••••••••.••••••.••••...••••.........•.....•.........................•............ III PUBLICATIONS .......•............•............•..•....•..•..•........••.•....••........•........•..•...•..•...•.•.......... Iv

TABLE OF CONTENTS .......••.•.......•.••..•...••..•.•............•.....•.......•.........•.....••.••................ vl

LIST OF FIGURES ..•........••..•.•.•.....••••.•....•.••.••...........••..••.•......••.......•...•..••..•.....•.•........ xll

LIST OF TABLES ...•..•••....••...•........•...••.••.•.•..•••••.•.......•..•.........•........•.......................... xvl

ABBREVIATIONS ..••..•..•...••.......•....•...••.•••.....•••............•.•.........•...........•..•...•.....•........ xvlll

CHAPTER 1 : GENERAL INTRODUCTION ...................................................... 1

CHAPTER 2: G ENERAL MATERIALS AND METHODS ........................... 1 3

2.1 ANIMALS AND TISSUES .................•............•............•.............. 1 3

2.21SOLATION O F LIPOPIGMENT .........................•...•................•. 1 3

2.3 THIN SECTION ELECTRON MICROSCOPY ...........•...•............ 14

2.4 AMINO ACID ANALYSIS ............•••••.....•..•.....•.........•................. 1 4

2.5 LITHIUM DODECYL SULPHATE POLYACRYLAMIDE GEL

ELECTROPHORESIS (LDS-PAGE) .....•....•...•..........................• 15

2.6 SILVER STAINING OF POLYACRYLAMIDE GELS ................. 1 5

2.7 CHEMICALS ...•••..••.•••.••.•....•.•.•........•....•.......••..•..•...•.....•....•.....• 1 6

CHAPTER 3 : LD5-PAGE BEHAVIOUR AND 1 251

RADIOLABELLING OF PANCREATIC

LIPOPIGMENT PROTEINS .................................................... 17

3.1 INTRODUCTION ••..•..••••••••.•••..••••....•.....•..........•..•..•••••••••••......... 1 7

3.2 SPECIAL MATERIALS AND METHODS .•••.••.•......•.................. 1 8

Page 9: Biochemical studies on animal models of ceroid-lipofuscinoses

VII

Page

3.2.1 1 251 radlolabelllng of pancreatic llpoplgment protelns ...... 1 8

3.2.2 Detection of the radlolabel ................................•................... 1 8

3.3 RESULTS .........................................................•........................ 1 9

3.3.1 LDS-PAGE behaviour of llpoplgment protelns ................... 1 9

1 25 3.3.2 Incorporation of I Into llpoplgment protelns ................. 20

3.4 DISCUSSION ...••••••.•................................................................. 23

CHAPTER 4 : IDENTIFICATION OF THE 3.5 kDa LIPOPIGMENT

BAND ............................................................................................ 25

4.1 INTRODUCTION ........................................................................ 25

4.2 SPECIAL MATERIALS AND METHODS .................................. 25

4.2.1 Size exclusion high pressure liquid

chromatography (HPLC) ....................................................... 25

4.2.2 Amino acid sequenclng ......................................................... 26

4.2.3 Repetitive yield and Initial yield calculatlons ...................... 26

4.3 RESUL TS ................................................................................... 26

4.3.1 Size exclusion HPLC of llpoplgment protelns .................... 26

4.3.2 Amino acid sequenclng of the molar dominant

llpoplgment proteln ............................................................... 29

4.4 DISCUSSION ............................................................................. 34

Page 10: Biochemical studies on animal models of ceroid-lipofuscinoses

CHAPTER 5 : THE CARBOXYL-TERMINAL DETERMINATION

VIII

Page

OF THE MAJOR STORED PROTEIN AND

CHARACTERISATION OF THE OTHER LIPOPIGMENT

PROTEINS ................................................................................... 37

5.1 INTRODUCTION ................................... ..................................... 37

5.2 SPECIAL MATERIALS AND METHODS .................................. 37

5.2.1 Extraction of proteollplds from llpoplgment ....................... 37

5.2.2 Diffusion elution from polyacrylamide gels .............. ....... ... 38

5.2.3 Electro blotting of llpoplgment protelns .............................. 38

5.2.4 Cyanogen bromide (CNBr) digestion of llpoplgment

proteollplds ....................................... . .................................... 39

5.2.5 Mass spectroscopy analysis of CNBr dlgests .................... 39

5.3 RESUL TS .................................................................................. 40

5.3.1 Characterisation of the proteollplds extracted

from llpoplgment ................................................................... 40

5.3.2 Identification of the 1 4.8 and 24 kDa llpoplgment

proteins ................................................................................... 43

5.3.3 CNBr cleavage of llpoplgment proteollplds and analysis

of the digest fragments .......................................................... 44

5.4 DISCUSSION ...................................................... ....................... 46

CHAPTER 6 : STUDIES ON MITOCHONDRIA

ISOLATED FROM CONTROL AND AFFECTED

SHEEP ........................................................................................... 49

6.1 INTRODUCTION ............ ............................................................ 49

Page 11: Biochemical studies on animal models of ceroid-lipofuscinoses

IX

Page

6.2 SPECIAL MATERIALS AND METHODS .................................. 49

6.2.1 Isolation of mHochondrla and Inner mitochondrial

membrane vesicles from affected and control sheep ........ 49

6.2.2 Negative staining electron mlcroscopy ............................... so 6.2.3 Respiratory measurements .....•.....................••...•................. so

6.3 RESUL TS ................................................................................... 51

6.3.1 Electron mlcroscopy and LDS-PAGE of llpoplgment and

mitochondrial preparatlons .................................................. 51

6.3.2 Respiratory measurements on Isolated mitochondrial

fractlons ...••...•...••••••.••.•.............•.......•...................••............... 53

6.4 DISCUSSION •..........•................................................................. 56

C HAPTER 7 : CELL CULTURE OF OVINE KIDNEY EPITHELIAL

CELLS ........................................................................................... sa

7.1 INTRODUCTION .......................•................................................ 58

7.2 SPECIAL MATERIALS AND METHODS .................................. 59

7.2.1 Composition of growth and maintenance medla ................ 59

7.2.2 Preparation of affected and control kidney epithelial

cells for primary cell culture ................................................. 59

7.2.3 Growth and maintenance of cell cuHures ....•...................... 59

7.2.4 Preparation of cells for light and thin section

electron mlcroscopy .........••.•................................................ 60 7.2.5 Radlolabelllng of cuHured cells ............................................ 60

7.3 RESUL TS ................•.................................................................. 62

Page 12: Biochemical studies on animal models of ceroid-lipofuscinoses

X

Page

7.3.1 Morphology and growth characteristics of cultured

kidney cells ............................................................................ 62

7.3.2 Measuring the synthesis of subunlt c

In cultured kidney cells ........................................•................ 65

7.4 DISCUSSION ............................................................................. 68

C HAPTER 8 : ISOLATION AND CHARACTERISATION OF

LIPOPIGMENT FROM A CASE OF BOVINE CEROID-

LIPOFUSCINOSIS ..................................................................... 70

8.1 INTRODUCTION ••...•.....•............................................................ 70

8.2 SPECIAL MATERIALS AND METHODS .................................. 70

8.2.1 Bovine tlssue ..••..................................................................... 70

8.2.2 Isolation of bovine llpoplgment bodles .......•...•.................... 70

8.2.3 Cyanogen bromide digestion of Isolated llpoplgment. ....... 71

8.3 RESULTS .....................•............•.....•.•.....•........•...•...•.•.•............. 72

8.3.1 Characteristics of bovine llpoplgments ............................... 72

8.3.2 Amino acid composition and LDS-PAGE of

bovine llpoplgment protelns ...•..•.......................................... 74

8.3.3 Amino acid sequenclng of bovine

llpoplgment ..•.•....•.....•.........•••......••......................................... 77

8.3.4 Mass spectral analysis of CNBr digest of bovine

llpoplgment ............................................................................ 78

8.4 DISCUSSION ..................................................................••......... 79

CHAPTER 9 : CANINE CEROID-LIPOFUSCINOSIS ................................ 80

9.1 INTRODUCTION ........................................................................ 80

Page 13: Biochemical studies on animal models of ceroid-lipofuscinoses

xl

Page

9.2 SPECIAL MATERIALS AND METHODS ....•....•..••.•..•........•...•.. 80

9 .2.1 Canine tlssues ..............................................•........................ BO

9.2.2 Isolation of canine llpoplgment bodles ................................ 81

9.3 RESUL TS ......••.••••••••..•...•........••••...•...................•..•........•........... 81

9.3.1 Characteristics of canine llpoplgment. ................................ 81

9.3.2 Amino acid sequenclng of canine llpoplgment ................... 82

9 .4 DISCUSSION •..•...••....•••...........•....••......•........•..••.•.•..•...•..........•. 83

CHAPTER 1 0 : G ENERAL DISCUSSION ........................................................ 84

REFERENCES ......................................................................................................... 95

Page 14: Biochemical studies on animal models of ceroid-lipofuscinoses

Figure

3.1 A,B

3.2 A,B

3.3

4.1 A,B & C

4.2

4.3

4.4

5.1

XII

LIST OF FIGURES

Page

LDS-20% PAGE of pancreatic llpoplgment protein

from the same Isolate run on different gels (A)

and llpoplgment proteins separated by LDS-20% PAGE

In the presence and absence of 2-mercaptoethanol (B) ............. 1 9

Incorporation of 1251 at various lodogen concentrations (A)

and at various times (B) ••............................................................... 20

LDS-20% PAGE of 12511abelled pancreatic llpoplgment

protelns ........................................................................................... 21

HPLC profile of llpoplgment proteins eluted from a

TSK G2000 SW column and a TSK G2000 SW and G4000 SW

column connected In series (A & B). LDS-20% PAGE of

fractions eluted from the columns connected In series (C) ....... 27

LDS-20% PAGE of llpoplgment proteins after acetone

precipitation and size exclusion HPLC .........................•.............. 28

Cycles 1 , 2, 3 and 1 0, 1 1 and 1 2 obtained when

pancreatic llpoplgment protein was sequenced ......•................... 29

The PTH amino acid yields of the major sequence obtained from

pancreas (A), brain (B) and kidney (C) llpoplgment proteln ....... 31

LDS-20% PAGE of total pancreatic llpoplgment proteins (A)

nonextractable proteins (B) and extracted proteolipid (C) .......... 41

Page 15: Biochemical studies on animal models of ceroid-lipofuscinoses

Figure

5.2

5.3

5.4

5.5

6.1

6.2

6.3

7.1

7.2

XIII

Page

LDS-1 5% PAGE of pancreatic llpoplgment proteins that were

diffusion eluted from an LD$-1 5% polyacrylamide gel ................ 43

Coomassle blue stained pancreatic llpoplgment proteollplds

elctro blotted onto a PVDF membrane .......................................... 44

Linear mass spectral scan over the molecular Ion region

of the carboxyl-terminal CNBr cleavage fragment of subunlt c

extracted from pancreatic llpoplgment ......................................... 45

Amino acid sequence of the major stored llpoplgment

proteln ........................................................................................ ..... 46

Thin section electron micrographs of pancreatic llpoplgment

and Isolated mitochondrial preparations (A & B) and negatively

stained llpoplgment and Inner mltochodrlal membrane vesicles

(C & 0) ...............•.••..•......••............•.....................•.............•.............. 51

LDS-PAGE of Inner mitochondrial membrane vesicle

proteins from control and affected sheep livers (A) and PAGE of

bovine ATP synthase (8) ............................................................... 52

Respiratory activity of Isolated mitochondrial preparations

from affected (A) and control (B) kidney tlssue ........................... 53

Thin section electron micrographs of affected kidney

epithelial cells In primary culture (A) and In third

passage culture (B) .....................................................•................. 62

The growth of affected (A), and control (B), kidney epithelial

primary cultures •....•....•.•....••...••.....•........•...................................... 63

Page 16: Biochemical studies on animal models of ceroid-lipofuscinoses

Figure

7.3

7.4

7.5

7.6

8.1

8.2

8.3

8.4

8.5

9.1

xlv

Page

Light microscopic appearance of affected (A) and control (B)

primary cultured cells stained with H&E and luxol fast blue ..... 63

Thin section electron micrographs of membrane bound

cytoplasmic bodies from affected cultured cells (A & B) and

autophagic structures from control cells (C & 0) .....•.................. 64

% of 3H Incorporated Into TCA preclpltable protein

from labelled affected (A) and control (B) primary kidney

cell cultures .................................................................................... 65

3H distribution amongst the proteolipid fractions

from labelled affected and control cultured cells separated by

LOS-1 5°/o PAGE ............................................................................... 67

Thin section electron micrographs of llpoplgment Isolated

from bovine pancreas, liver, kidney and brain (A, B, C & 0) ....... 72

Isolated bovine llpoplgments on CsCI Isopycnlc gradlents ........ 74

LOS-1 5% PAGE of llpoplgment protein Isolated from ovlne

pancreas (A) and bovine pancreas, kidney and liver (B,C & 0) .. 76

The PTH amino acid yields of the first 25 resldues

of subunlt c sequenced from bovine pancreatic llpoplgment .... 77

Linear mass spectral scan over the molecular Ion region

of the carboxyl-terminal CNBr cleavage fragment of subunlt c

Isolated from bovine pancreatic llpoplgment. ••....•••.•....•.....•........ 78

Thin section electron micrographs of llpoplgment Isolated

from frozen Border Collie brain (A) and Tibetan Terrier brain

(B & C) •....•.•..•.... ••..•••.•••.••.•••.•••••.••.•••••.....•..........•..•••••••••••••.........•... 81

Page 17: Biochemical studies on animal models of ceroid-lipofuscinoses

Figure

9.2

XV

Page

The PTH amino acid yields of the first 1 6 amino-terminal

resldues of subunlt c sequenced from the Border Collie (A),

and Tibetan Terrier (B), brain llpoplgment .................................... 82

Page 18: Biochemical studies on animal models of ceroid-lipofuscinoses

Table

3.1

4.1

4.2

5.1

5.2

6.1

6.2

7.1

XVI

LIST OF TABLES

Page

The distribution of 1251 amongst radlolabelled

pancreatic llpoplgment protelns ................................................... 22

Estimates of the contribution of the sequenced peptide to

the total llpoplgment protein masses ........................................... 32

The amino acid composition, In moles o/o of total llpoplgment

protein and the full subunlt cof mitochondrial ATP synthase ... 33

The proportion of protein recovered as proteolipid by

ether precipitation of chloroform/methanol/ammonium acetate

solubilised llpoplgment ...........•.......•.............................................. 40

The amino acid composition of the nonextracted

llpoplgment protein and the chloroform/methanol/ammonium

acetate extracted proteolipid compared with the full subunlt c

of mitochondrial ATP synthase ..........................•..•........•.............. 42

Respiratory control ratios from control and affected kidney

mitochondrial preparations using succinate and glutamate as

respiratory substrates .•...........•...................................................... 54

ADP/0 ratios from control and affected kidney mitochondrial

preparations using succinate and glutamate as respiratory

substrates ........•.••••.•....••.....•...•.•..........................•.......•.................. 55

Specific activities of the proteolipid fractions extracted from

affected and control cell cultures .....................••.....•..................... 66

Page 19: Biochemical studies on animal models of ceroid-lipofuscinoses

Table

8.1

8.2

1 0.1

XVII

Page

Characteristics of llpoplgment Isolated from bovine tlssues ..... 73

The amino acid composition of bovine llpoplgments compared

with the full bovine subunlt c of mitochondrial

ATP synthase ..........................•....................................................... 75

Ovlne pancreatic llpoptgment composttlon ................................. 86

Page 20: Biochemical studies on animal models of ceroid-lipofuscinoses

ACR

ADP

ATP

ATV

Da

DCCD

E DTA

FBS

H&E

HPLC

kDa

LDS

LDS-PAGE

M E M

PAGE

PBS

PSK

PTH

PVDF

SOS

SOS-PAGE

COMMON ABBREVIATIONS USED

Acceptor control ratio

Adenosine 5'-phosphate

Adenosine 5'-triphosphate

Antibiotic-trypsin-versene

Dalton

Dicyclohexylcarbodi imide

Ethylenediaminetetra-acetate

Foetal bovine serum

Haematoxyl in and eosin

High pressure l iquid chromatography

kilo Dalton

Lithium dodecyl sulphate

Lithium dodecyl sulphate polyacrylamide ge l

e lectrophoresis

Minimum essential medium

Polyacrylamide gel e lectrophoresis

Phosphate buffered sal ine

Penici l l in , streptomycin and kanamycin

Phenylthiohydantoin

Polyvinylidene difluoride

Sodium dodecyl sulphate

Sodium dodecyl sulphate polyacrylamide ge l

electrophoresis

TCA Trich loroacetic acid

TLC Thin layer chromatography

XVIII

Page 21: Biochemical studies on animal models of ceroid-lipofuscinoses

1

C H A P T E R 1

GENERAL INTRODUCTION

The ceroid-l ipofusci noses are a g roup of recessive ly i n he rited lysosomal

storage d iseases of chi ldren and domestic animals. They are characterised

pathological ly by brain and retinal atrophy and the presence of fluorescent

l ipopigment bodies in neurones and a variety of other cel l types throughout

the body. Cl in ical features i nclude blindness, seizures, mental retardation

and dementia u ltimately leading to premature death.

The term ceroid-l i pofuscinosis was i ntroduced as a descri ptive name fo r

t h e se d i s eases by Zeman and Dyken ( 1 969 ) o n t h e bas is of s im i lar

h i stoche mical and fluorescent characteri stics of the sto red l ipopigment to

those of pigments ceroid and l ipofuscin . Prior to th is, these diseases were

g rouped with the gang liosidoses as forms of amaurotic fami lial idiocy. They

are prese ntly also known generical ly as Batten's disease. Lipofuscin (age

pig ment) and ceroid are two types of i ntracel lu lar cytosomes ( l ipopigments)

characte rised by a yel low-brown colour, fluorescence under u ltravio let l ight

and stai n i ng with l ip id stai ns . The former is regarded as a normal age

re lated phenomenon and the latter as a pathological p igment associated

with Vitamin E deficiency (Porta and Hartroff, 1 969) .

There are up to 1 0 subtypes of ceroid- lipofuscinosis which differ i n the age

of o nset and i n the p rog ress ion of c l in ical disease. H owever, the main

e nt i t i e s are t he i n fant i le ( H a lt i a-Santavu o ri ) , late i n fant i l e (Jansky­

B i e lschowsky) , juven i le (Batten , Spie lmeyer-Sjogren) and an adult (Kufs)

fo rm (Lake, 1 984; Dyke n , 1 988; Berkovic, et al. , 1 988; Boustany, et al. ,

1 988; Wisniewski , et al. , 1 988) . Col lectively they are bel ieved to be the

m ost common type of lysosomal storage disease in humans. Prevalence

e st i mates as h igh as 1 i n 25 ,000 and 1 i n 1 2 ,500 l ive b i rths have been

reported (Zeman , 1 976 ; Rider and Rider, 1 988).

Page 22: Biochemical studies on animal models of ceroid-lipofuscinoses

2

S i mi lar d iseases have also been described i n a number of domestic animals

as fol lows:

SPECIES BREED KEY R EFERENCES

Bovine Beefmaster Read and Bridges, 1 969

Devon Harper, et al. , 1 988

Canine Eng lish Setter Koppang, 1 970;1 973/74 ; 1 988;

Armstrong , 1 982 ;Armstrong and Koppang,

1 982

Chihuahua Rac and Giesecke, 1 975; Jolly

and Hartley, 1 977

Dachshund Cummings and de Lahunta, 1 977;

Vandevelde and Fatzer, 1 980

Saluki Apple by, et al. , 1 982

Cocker Spaniel Wi lkie and Hudson, 1 982

Dalmation Goebel and Dahme, 1 985

Blue Heeler Cho, et al. , 1 986 ; Wood, et

al. , 1 987

Border Col l ie Taylor and Farrow, 1 988

Tibetan Terrier Ri is , et al. , 1 990

Fe l ine Siamese Green and Little , 1 974

Ovine South Hampshire Jolly, et a/. , 1 980; 1 982

Goat Nubian Fiske and Storts, 1 988

D espi te cons ide rable c l i n ical and patho log ical stud i e s t h e u nderlyi ng

m etabo l ic bases of the ceroid- l ipofuscinoses remain unknown. In storage

d iseases , the deficient enzyme should be reflected by the nature of the

dominantly stored or accumulated chemical species. However, an approach

to identify such dominant species has not been widely adopted i n research

Page 23: Biochemical studies on animal models of ceroid-lipofuscinoses

3

i nto the ceroid- l ipofusci noses. This is probably due, in part, to the l imited

a m o u nt of post mortem t i ssue avai lab le f ro m t h e h u m a n fo rms and

difficulties encountered in isolat ing and solubi l ising the l ipopigment.

T h e l i pi d stai n i ng and f luoresce nce properties of the sto red l ipopig ment ,

w hich had been l ikened to those of ceroid and l ipofuscin (Zeman and Dyken,

1 969) , i mplied that their accumulation reflected a simi lar pathogenesis. This

was perceived to be associated with peroxidation of l ipid and the formation

of Schiff base polymers from malonaldehyde and amino acids , produced

d u ring free radical peroxidat ion of po lyunsatu rated fatty acids (Chio and

Tappel , 1 969a,b).

A deficiency in leucocyte peroxidase in late infantile and juveni le forms of the

d i sease was reported by Armstrong , et al. , ( 1 973) . These fi ndings led

Z e man ( 1 974) to suggest that s i nce malonaldehyde cou ld be produced

during free radical peroxidation of polyunsaturated fatty acids, the formation

of f lu o resce nt l i pop igments i n the cero id- l i pofusc inoses cou ld i nvo lve

abnormal peroxidation of l ip ids . A nu mber of other reports conf irmed

deficiencies of leucocyte peroxidase i n the late i nfanti le (Armstrong , et al. ,

1 974a; Awasth i , et al. , 1 977 ; Jensen , et al. , 1 977), juven i le (Armstrong , et

al. , 1 974b ; Gadoth , 1 978) and adu lt forms of disease (Armstrong , et al. ,

1 974b; Bozdech , et al. , 1 980) . In contrast, no evidence for a peroxidase

d eficiency was found i n the i nfanti le (Anzi l , et al. , 1 975; Den Tandt and

Martin , 1 978; Seeker, et al. , 1 979) and juveni le forms of the disease (Haust,

et al. , 1 976 ; Den Tandt and Marti n , 1 978) . lsoe lectric focussi ng studies

revealed no qualitative or quantitative differences in these enzymes i n saliva

a nd parotid g land betwee n no rmal i ndividuals and pat ients with juven i le

neuronal ceroid- l ipofuscinosis (P i lz, et al., 1 976a,b; Pi lz and Goebel , 1 977).

A rm strong , ( 1 982) later reported that "pat ients with g e neral ised ceroid­

l i pofusci nosis have relative ly normal levels of peroxidase if total enzyme is

m e asured , but differ i n the i nt race l lu lar d ist ributi on" , i . e . a decrease in

so lub le leucocyte peroxidase activity was accompanied by an increase in

i nsoluble or bound peroxidase activity. Much of the debate concerning the

apparent peroxidase deficiency in the ceroid- l ipofuscinoses has centred on

t h e m ethodo logy of measu rement and subce l lu lar d i st ri buti on of these

enzymes.

Page 24: Biochemical studies on animal models of ceroid-lipofuscinoses

4

Spectrophotometric determi nation of peroxidase activity i nvo lved the use of

hydrogen peroxide as substrata and p-phenylenediamine as hydrogen donor

(Armstrong , et al. , 1 973). The use of this hydrogen donor was stressed by

Armstrong , et al. , ( 1 974b) as "when other donors are employed the enzyme

deficiency may not be demonstrated". Tsan , et al. , ( 1 978) , however found

the use of p-phenylenediamine to be unsuitable for the study of peroxidases.

T h e subcel luar distribut ion and enzymology of the leucocyte peroxidases

h ave not been wel l characterised.

G utteridge, et al. , ( 1 982) reported e levated leve ls of non-protein bound i ron

in the cerebrospinal fluid from patients affected with the i nfantile and juveni le

forms of cero id-lipofuscinosis. As iron is a catalyst of the l ipid peroxidation

process, an i ncrease in i ron levels was l inked to a decreased abi lity of the

cerebrospinal fluid to inhibit hydroxyl radical production , a necessary step in

l ip id peroxidation . A defect in i ron metabolism was subsequently suggested

as a possible mechanism i n the pathogenesis of the ceroid-l ipofusci noses

(Gutteridge , et al. , 1 983) . However, He iskala, et al. , ( 1 988) reported that

concentrat ions of loosely bound i ron and copper i n cerebrospinal f luid of

patients with i nfanti le , late i nfanti le and juven i le forms of d isease did not

correlate with cl in ical diagnosis, nor with the degenerative symptoms of the

d isease. They concluded that there was no support for a major ro le for i ron

toxicity in the development of neuronal degeneration.

The nature of the f luorophore responsible for the f luorescence of stored

l i popigment has also attracted much interest and speculation , as it has been

considered to be significant to the pathogenesis of the ceroid-l ipofuscinoses.

Studies of the l ipid component of l ipopigment showed the presence of a

f l u o re scent acid ic struct u re t h at co nce ntrated at t he o rig i n i n no rmal

p hospol ipid thin layer chromatography developing solvents (Siakotos, et al. ,

1 972 ; S iakotos and Koppang , 1 973 ; Zeman , 1 976). The so cal led "acidic

l ipid polymer" or "Schiff base polymer" was thought to be formed by reaction

of malonylaldehyde, a product of peroxidation of polyunsaturated fatty acids,

w it h am ino g roups. S im i larity of the fl uorescent and ch romatog raphic

p ropert ies of th i s mate ria l to t hose generated with in vitro peroxidation

stud ies (E I Ieder , 1 98 1 ) , l ater added support to t h is theory . Corrected

Page 25: Biochemical studies on animal models of ceroid-lipofuscinoses

5

excitation-emission spectra by Katz , et al. , ( 1 988) showed that l ipopigment

fro m Batten's disease tissues emitted i n the yellow-orange reg ion (520-540

n m ) and not i n the blue reg ion (460-480 nm) expected of the "Shift base

polymer''. An i ncrease in the absorption spectra at 280 nm was also noted.

This was interpreted to be due to "non-fluorescent l ipids".

Another fluo rescent polymer found in the neutral l ipids of l ipopigment was

designated "polymalonaldehyde" again on the basis of the simi larities of its

f l u o re sce n t a n d c h ro m ato g ra p h i c p ro p e rt i e s to in vitro g e n e rated

"polymalonaldehyde" (Siakotos, et al. , 1 972 ; Zeman, 1 976 ; Gutteridge , et al. ,

1 977) .

A noth e r h ypot hes is l i nked to the putat ive l i p i d natu re of t h e sto red

l i po pig ment i mpl ied a pri mary defect in fatty acid metabol ism. This was

developed fol lowing observations of abnormal fatty acid profi les i n the major

phospholipids (phosphatidylchol ine, phosphatidylinosito l , phosphatidylserine

and phosphatidylethano lam i n e ) of b rai n fro m chi ldren affected with the

i nfant i le form of disease (Hagberg , et al. , 1 968; 1 974; Svennerholm, et al. ,

1 975 ; 1 987 ; Svennerholm, 1 976) . In particu lar, an i ncrease in 20:4(n-6), a

decrease in 22 :4(n-6) and 22:6(n-3) was reported. The name

" p o ly u n satu rated fatty acid l i p idos is" was subsequ e nt ly proposed to

distinguish this disease from the other forms in which the fatty acid changes

were not observed. In contrast, Pul larkat, et al. , ( 1 982) reported a decrease

i n t h e proport ions of 22 :6 (n-3) i n g rey matter phosphat idylseri ne in the

i nfanti le , late infant i le, adu lt and 'pigment variant' forms, but no changes in

the fatty acids of the other phospholipids.

The l ipid peroxidation hypothesis provided a rationale for the therapeutic use

of antioxidants such as vitamin E , butylated hydroxytoluene or iron-chelating

a g e n t s s u c h as des fe r ri o x a m i n e ( Ze m a n , 1 9 7 4 ; S antavuo ri and

Weste rmarck, 1 984 ; Santavuo ri , et al. , 1 988) . However, "ant ioxidant

therapy" has not produced any significant cl inical improvement attributed to

t h i s fo rm of t reatment i n pat i e nts affected w i th ce ro i d- l i pofuscinosis

( S a n tavu o r i , et al. , 1 9 8 8 ) , a nd t h e m e t h od o f t re at m e n t re m a i n s

controversial .

Page 26: Biochemical studies on animal models of ceroid-lipofuscinoses

6

A f luorescent protein complex was left after mu lt ip le solvent extractions of

l i po pigment i so lated from brains of late i nfanti le form of disease (Wolfe , et

al., 1 977) . Spectral and chemical analysis of th is component led them to

s u g g e st t h at the f l uore scence was d u e to the p resence of a ret ino id

component , possibly complexed to a smal l peptide. As this component was

shown to account for 50% of the dry weight of the storage material , a defect

i n ret i noic acid metabo l ism was suggested as a possible mechanism of

pat h og e n e s i s i n t he ce ro i d - l i pofu sci noses . H oweve r , these spectral

assignments were ambiguous and have also been shown to be compatible

with a cholesterol and/or reti nol-cho lesterol complex (Nelson and Hal ley,

1 977) .

The presence of dolicho l , another i soprenoid, at "elevated" levels i n brain

t issue , isolated sto rage cytosomes and i n the uri nary sedi ment of patients

with i nfanti le, late infanti le and juveni le forms of disease has been reported

(Wolfe , et al., 1 977; Ng Ying Kin and Wolfe , 1 982 ; Ng Ying Kin , et al., 1 983) .

As a consequence defects i n dol ichol metabol ism or processing of golg i

de rived lysosomes and membranes have bee n suggested as possib le

causes of the disease. However, simi lar incorporation of

[3H]mevalonolactone and [1 4c]acetate i nto dolichol fractions in cu ltured skin

fib rob lasts from pat ients with neuro nal ceroid-l i pofusci nosis and control

f ibroblasts led Paton and Poulos, ( 1 984) to conclude that the disease did not

i nvo lve a defect i n do l icho l metabo l ism . I ncrease i n dol ichol i n u ri nary

sediment led to the suggestion that urine dol ichol measurements could be

used as a biochemical marker of the disease (Wolfe, et al., 1 986) . The low

s p ec i f icity of the test d u e to n u m e ro u s false posit ives fro m bacteri al

contamination , alcohol i ngestion and vigorous exercise prior to the test may

l im it its usefulness (Wolfe, et al., 1 988). lt is possible that the uri nary dolichol

l eve ls ref lect the excret ion of the sto rage l ipopig ment in slough ed renal

tubu lar ce l l cytoplasm ( R . D. Jol ly, pers . comm. ) . I ntrace l lu lar dolichol is

fou nd with in lysosomes and is general ly regarded as a lysosomal marker

(Wong , et al., 1 982) . I ncreased dol ichol levels i n the ce rebral cortex of

pat ients with Alzhei mer's disease and in aged ind ividuals (Wo lfe , et al.,

1 982 ; Pul larkat and Reha, 1 982; Ng Ying K in , et al., 1 983) , suggested that

i ncreased do l icho l leve ls i n b rains of ceroid- l i pofuscinosis pat ients may

reflect a secondary phenomenon. E levated uri nary dolicho l levels i n chronic

Page 27: Biochemical studies on animal models of ceroid-lipofuscinoses

7

alcohol ics has also been reported (Pul larkat and Raguthu , 1 985).

Significantly h igher contents (up to 20 times) of phosphorylated dolichols (P­

dol ichol) have been reported in whole tissue extracts of patients with ceroid­

l i pofusci nosis relative to that i n age-matched cont ro ls (Hal l and Patrick,

1 985; Pu l larkat , et al. , 1 988 ; Danie l , 1 990). Qualitative analyses i ndicated

that the P-do l ichol that accumulated i n brains of late infanti le and juveni le

pat ients with cero id- l ipofuscinosis was largely l i nked to ol igosaccharides

rang ing in size from four to fourteen monosaccharide units (Hall and Patrick,

1 988). A defect i n the metabolism of dolichol-l inked ol igosaccharides (Do l­

P P- O S ) i n vo lved i n t h e g lycosy lat i o n of p rote i n s was subsequent ly

suggested as a possible biochemical basis of the disease (Pul larkat, et al.,

1 988; Pul larkat, 1 990). However, no evidence has yet been reported for the

presence of any abnormal ol igosaccharides or defective g lycoproteins in the

ce ro id- l ipofusci noses. Wolfe , et al. , ( 1 988) suggested that an i ncrease in

do l ichyl phosphates may not be unique to the ceroid-l ipofuscinosis, as they

were also found to be i ncreased in brai ns of GM 1 -gang l iosidosis and Tay­

Sachs disease patients. As the Do l-PP-OS isolated from l ipopigment was

estimated to account for 7% or less of the dry weight of l ipopigment, (Hal l , et

al. , 1 990) their presence in the disease was unl ike ly to represent the primary

biochemical defect.

I vy , et al. , ( 1 984) showed that i nject ions of leupept in (a th io l-prote inase

i nh ib itor) or ch loroquine (a general lysosome enzyme inh ibitor) i nto brains of

rats i nduced lysosome associated g ranu lar aggregates resembl i ng the

l i po p i g m e nt found i n pat i e nts w i t h n e u ro n a l cero id - l i pofusci noses .

Accumulat ion of l ipopigment i n these diseases by a s imi lar defect ive (or

absent) lysosomal prote i nase was suggested. These f i ndi ngs and the

observed concommitant increases i n dolichol levels in rat brains treated with

leupepti n and chloroquine led Wolfe, et al. , ( 1 987) to propose a relationship

between "dolichols and lysosomal organelle membrane turn over". A specific

defect in a cysteine proteinase, important to the recycl ing and exocytosis of

o rganel lar membrane protei ns was postulated as a possible cause for the

cero id-lipofuscinoses. As g lycosylation of thiol-endoproteases are regu lated

by the levels of dol icho l phosphates i n the golgi and endoplasmic reticu lm,

over-g lycosylation due to h ig h levels of dolicho l phosphates has also been

Page 28: Biochemical studies on animal models of ceroid-lipofuscinoses

8

suggested as a possible mechanism leading to a putative protease defect

(Boustany and Kolodny, 1 989).

A variable decrease in cathepsin B activity in f ibroblasts from patients with

various forms of ce ro id- l ipofusci nos is has been reported (Dawson and

G laser , 1 987) . This was conside red to be a seco ndary e ffect due to

accumulation of abnormal peroxides, resulting from a deficiency of a specific

p h os p h o l i pase A2 ( Daws o n and G laser , 1 988 ) . Howeve r , i mpai red

lysosomal phospholipase A1 activity and normal activity of phosphol ipase A2 i n tissues from "some cases" of humans with neuronal ceroid-l ipofusci nosis

h as also been reported (Dawson, 1 990) . The significance of these results to

the d isease, if any, remains to be determined.

Eto, et al., (1 990) reported that cathepsins B, H , and L activities in cu ltured

ski n fi broblasts from patients with the juven i le form of the d isease were

s imi lar to those determined from control fibroblasts.

R educt ion i n fasting serum very low density l ipoprotein (VLDL) i n patients

with the juveni le form of the disease, suggested a metabolic defect in l ipid

t ransport (G i l l is , et al., 1 987; Bennett , et al., 1 988) . Another observation

i nvo lved a decrease in e ryth rocyte membrane f lu idity in patients with the

juveni le form of disease, possibly due to a decrease in docosahexenoic acid

( Koh lschutter, et al., 1 988) .

I mmunoreactivity of l ipopigments from the juveni le form of the disease was

n oted with monoclonal antibodies raised against fragments of amyloid 13-

p rotei n . Local isat ion of t h i s immunoreactivity to a 3 1 kDa protei n from

i so l ated l i po p i g m e nt l e d K i tag u c h i , et al., ( 1 9 90 ) to s ug g e st t h at

pathoge nes is might i nvo lve defect ive processi ng of amylo id precu rsor

p rotein from which 13-protein is derived. The 13-protein is a major component

of amyloid deposits i n agi ng and Alzheimer's disease and i s thought to be

deposited as a resu lt of a p roteo lyt ic processi ng defect of the precu rsor

protei n ( Dyrks, et al., 1 988). However, as the 31 kDa protein isolated from

l ipopigment has not yet been characterised, the significance of this result to

the ceroid-l ipofuscinoses remains to be determined .

Page 29: Biochemical studies on animal models of ceroid-lipofuscinoses

9

Most of the above expe rimental observations and hypotheses have been

based on the l ipid stai n i ng and f luorescence characteristics of the stored

l i po pigment , and com pou nds found at "e levated leve ls" i n total t issue

extracts. None have led to the e lucidat ion of the underly ing biochemical

anomaly in the ceroid- l ipofuscinoses.

Ceroid-l i pofuscinosis has been recorded in a number of animal species as

noted ear l ie r. However, most of these reports are case studies and the

d iseases have not been fu l ly characterised. The disease in the Eng l ish

Setter dog though , is one that has been studied cl inically and pathologically

as a model of the juven i le human disease (Koppang , 1970; 1973/74; 1988;

Goebel , et al., 1982).

B i ochem ical i nvesti gat i ons i nto t h e can i ne d isease have cante red on

pe roxidase e n zymes and fatty acid abnorma l it i es (Pate l , et al., 1974;

S ia kotos , et al., 1978; A rm stro n g , et al., 1978a,b; Armstrong , 1982;

Armstrong and Koppang , 1982; Farnsworth, et a/., 1982; Keller, et a/., 1984;

Reddy, et al., 1985; Koppang , 1988). These studies have been l inked with

t h e putative l i p id pe rox idat ion theories of pathogenes is i n t he ceroid­

l ipofuscinoses.

T h e d isease i n the South H amps h i re sheep h as also been extensive ly

studied as a model of the juveni le human disease (Jol ly , et al., 1980; 1982;

1988; 1989; Graydon and Jo l ly , 1984; Mayhew, et al., 1985). The use of

such an an ima l mode l h as g reat ly advanced t h e study of t h e cero id­

l ipofusci noses. Not on ly i s experi mental mate rial readi ly avai lable but the

ab i l ity to euthanase an an i mal and commence iso lat ion of l i popigment

bodies with in mi nutes of death h as the advantage that artefactual post

mortem changes can be min imised.

The analogous d isease in sheep shows ret inal degeneration and severe

brain atrophy. The latter is a disti nctive feature of the ce roid-lipofuscinoses

re lative to other lysosomal storage diseases. Although the brai ns of new

born affected lambs were with in t he normal weight range for the fi rst 4

months, by terminal disease at 24-26 months of age , brai n weights were

50% of those of normal sheep at that age (Mayhew, et al., 1985; Jolly, et al.,

Page 30: Biochemical studies on animal models of ceroid-lipofuscinoses

1 0

1 989) . Atrophy began with a laminar necrosis i n the parietal area of the

cerebral cortex becoming more diffuse and spreading to the occipital and

last ly the temporal lobes. lt was accompanied by an i ncreasingly severe

fib ri l lary astrocytosis and an i ncrease in l ipopigment-laden macrophages.

Although storage of physical ly simi lar l ipopigment occurs in a variety of other

lysosomal storage diseases and i n normal aging , neuronal necrosis is not

such a feature. Th is suggested that i n ceroid - l i pofusci nosis , neurona l

necrosis was associated with the metabo l ic les ion rather than storage of

l ipo pigment per se (Jol ly, et al., 1 989 ; 1 990).

Lipopigment stored in neurones stai ns with Sudan black, luxol fast blue and

pe r iodic acid-Sch iff (PAS) stai ns. They a lso have a yel low f luorescence

when i rradiated with 366nm uv l ight in both paraffi n and frozen sections.

I nt e ns ity of f l uoresce nce and sta i n i ng i ncrease s with age ref lect i n g

i nc reasi ng s ize and total amou nts o f t h e sto red l ipopigment . Storage

m ateria l i s also found i n cardiac muscle , hepatocytes and Kupffer ce l ls ,

kidney and pancreatic epithelial cel ls and a wide variety of other cells with in

the body (Jol ly , et al., 1 980; 1 982) . U ltrastructurally they appear as electron

dense, membrane-bound, i rregulari ly rounded bodies. They have a g ranular

textu re but also many lame l lar p rofi les which h ave been descri bed as

fingerprint, curvi l inear, crystal loid or multi lamel lar structures. The reason for

th is diversity of structures i s not yet understood. They have however, been

i nterpreted as complex, three dimensional matrices in which repeating un its

o f p rot e i n and l i p id form paracrysta l l i ne structu res as a resu lt of the

condensation of bi layer membranes (Jol ly, et al., 1 988; 1 989) . The i r freeze

f racture e lectron microscopic appearance and powder X-ray diffract ion

pattern is thought to support this interpretation (Jol ly, et al., 1 988) .

The primary role of peroxidation of polyunsaturated fatty acids i n l ipopigment

formatio n in ceroid-li pofuscinosis was questioned by Palmer, et al., ( 1 985).

Th is was on the basis of the similarity of the brain g rey matter phospholipid

fatty acid compositions of sheep affected with ovine ceroid- l ipofuscinosis to

those of control sheep. There were no signs of essential fatty acid deficiency

i n the affected sheep. Sheep as ruminants must conserve their restricted

fatty acids fo r structu ral functions , and as such , if there was a fatty acid

d e fect , it s h o u ld h ave been ref lected in t h e phospho l i p id fatty acid

compositions. l t was concluded that an abnormality in fatty acid metabol ism

Page 31: Biochemical studies on animal models of ceroid-lipofuscinoses

1 1

was not primari ly i nvolved i n the pathogenesis of the disease.

A re lat ive ly s imp le m ethod of l i pop ig ment iso lat ion was deve loped by

Palmar, et al., (1 986a) . This enabled the systematic characterisation of the

sto red l i popigment. Li popigment i so lated from l iver, kidney, pancreas and

brai n of affected sheep was shown to contain 1 6-27% l ipid. Phospholipids

accounted fo r 50% of l iver l ipopig ment l ipids and contai ned the normal

mammalian membrane components phosphatidylchol ine,

phosphatidylethano lam ine , phosphatidyl i nosito l , phosphatidylseri ne and

b i s ( m o n oacy lg lyce ro ) p h osphate , a known lysosomal l i p id component

( B i e i ste i n , et al., 1 980) . The re m ai n i ng 50% of the l ip id fract ion was

accounted for by the neutral l ipids cho lestero l , dol ichol , dolichyl esters and

ubiquinone. These were thought to be i ndicative of a lysosomal orig in of the

l i po pig m ent . Do l icho l , i n the form of do l ic h o l py rophosphate l i nked

o l i gosaccharides , was a lso present accounti ng for 0 . 1 -2% of the total

l ipopigment mass (Hall , et al., 1 989) . The concentrations and distributions of

l i pop ig m ent metals accou nt i ng for 1 -2% (copper, i ron , calci u m , z i nc,

m a nganese , a l um i n u m , n icke l and ch rom i u m ) we re also cons ide red

consistent with the l ipopigment cytosomes functioning as lysosomes at some

stage i n their biogenesis (Palmer, et al., 1 988).

The majo r component of iso lated l ipopigment (65-75%) was found to be

p rotei naceous i n natu re . Th is mate rial was difficu lt to handle due to its

relative i nsolubi l ity. Of the large range of solvent systems tried , on ly SDS in

the presence of 5% 2-mercaptoethanol and formic acid were able to dissolve

t h e l ipop igment or de l i p idated p rote in obtai ned f rom it (Pa lmar , et al.,

1 986b) . Silver stain ing of l ipopigment proteins separated by so�ium dodecyl

su lphate polyacrylamide gel e lectrophoresis (SDS-PAGE) showed two major

protein bands, one that ran to the lower reg ion of the gel with an apparent

molecu lar weight of 3 .5 kDa and another at 1 4.8 kDa. These proteins were

relative ly insensitive to Coomassie b lue stai ns . The 3.5 kDa l ipopigment

band was present i n such amounts that its abnormal accumulation al lowed

the disti nction to be made between total control and affected whole tissue

homogenates, a classic criterio n for the identif ication of the abnormally

stored components in lysosomal storage diseases.

The analyses by Palmer, et a/, ( 1 986a,b) fai led to show any products of l ipid

Page 32: Biochemical studies on animal models of ceroid-lipofuscinoses

1 2

peroxidation o r abnormality i n the stored l ipids, nor was there a depletion of

unsaturated fatty acids. No quantitatively dominant fluorophore was found i n

t h e l i p id fract ions . I n fact , the f luorescence of t h e bod ies was lost on

separatio n of the various components. There was no evidence to suggest

that disturbances i n metal metabo l ism led to l ipopigment format ion . The

smal l amounts of phosphorylated dol ichol (0 .2-2%) also i ndicated that a

defect i n metabol ism of do l ichol-l i nked o l igosaccharides was un l i ke ly to

ref lect t he pri mary cause of the ovi ne d isease (Ha l l , et al., 1 989) . The

p re sence of low mo lecu la r we i g ht prote i ns as the major l i pop igment

component led Palmer, et al., ( 1 986a,b) to conclude that the ovine disease

was not a l ipidosis but represented a lysosomal proteinosis.

As the ovine disease was considered to be a g ood model of the juveni le

hu man d isease , these fi ndings represented a considerable advance i n the

understanding of the ceroid-l ipofuscinoses.

A number of mechanisms that cou ld lead to a lysosomal proteinosis were

proposed by Jol ly , et al., ( 1 988) . These were a deficiency of a lysosomal

protease or its contro l , secondary perturbation of lysosomal function simi lar

to that i nduced by i at roge n ic drugs or NH4C I , t he presentat ion to t h e

lysosomal system o f post-translat ional ly modi fi ed protein that cannot be

catabo l ised, the presentat ion of prote in i n a complex that protected it from

p roteo lys is , o r a defect i n recycl i ng from lysoso mes of some specif ic

membrane domain .

This thesis describes the identification of the major stored ovine l ipopigment

protein , considered to be specific to the disease. The relative i nsolubi lity and

difficulty in separation of the l ipopigment protein resulted in a non-traditional

approach bei ng adopted i n its subsequent characterisation . Appl ication of

the methodology developed during studies on the ovine l ipopigment was

also used to define the major stored l ipopigment component from two canine

forms and a bovine case of ceroid-l ipofuscinosis.

Page 33: Biochemical studies on animal models of ceroid-lipofuscinoses

C H A P T E R 2

G ENERAL MATERIALS AND METHODS

2.1 ANIMALS AND TISSU ES

1 3

Sheep with ceroid-l ipofuscinosis used in th is study were from an i nbred flock

of South Hampshi res, maintai ned by the mating of heterozygous ewes with

7 -8 mo nths o ld homozyg o u s ly affected ram s . These a n i ma ls we re

h usbanded at Massey U n ive rs ity under standard New Zealand pastu re

fa r m i ng co nd i t i o n s . D iag nos i s of affected lambs was establ i shed by

h istopathology of brai n b iops ies at 2.5-3 months of age ( Dickso n , et al. ,

1 989) . Tissues fo r expe ri mentati on were obtai ned at autopsy of affected

sheep 1 2-24 months old, and placed in ice-cold 0.0 1 M phosphate buffered

s a l i n e ( P B S ) , p H 7 . 2 w i t h i n m i nu tes of e u t h a n as i a by barb i tu rate

anaesthesia and exsangui nation . Confi rmation of the earl ier diagnosis of

ceroid-l ipofusci nosis was made from gross evidence of brain atrophy and/or

h istopathology. Control t issues were obtai ned from age matched normal

Southdown or New Zealand Romney sheep.

2.2 ISOLATION OF LIPOPIGMENT

Lipopigment was isolated from pancreas, kidney, brain and liver of affected

sheep by a combination of homogenizat ion , osmotic lysis, sonication and

centrifugation (Palmer, et al. , 1 988) .

From Pancreas, Liver and Brain

Pancreas, l iver o r brai n g rey matte r (2-40 g) , was ri nsed with PBS and

homogenized in 10 vol of ice-co ld 0.4 mM Tris-HCI, pH 7.4 for 1 min in a

Sorvall Omnimixer ( lvan Sorval l I nc. ) . The homogenate was fi ltered through

gauze , sonicated for 1 m i n , fi ltered through g lass wool , then pel leted in a

S o rva l l G LC- 1 ce nt ri fu g e fo r 30 m i n at 1, 400 g max · The pel let was

resuspended i n deion ized water and subjected to centrifugation at 12,000

gmax for 20 min . A white fluffy layer was gently washed off the pe l let which

was then resuspended i n deionized water, and pel leted by centrifugation at

1 2,000 gmax for 20 min. This procedure of washing and centrifugation was

Page 34: Biochemical studies on animal models of ceroid-lipofuscinoses

14

repeated unt i l a uniform pel let was obtained. The fi nal pellet was suspended

i n deion i zed water or di sso lved in 1 % l i th ium dodecyl sulphate (LDS) and

sto red at -20°C unti l requ i red .

From Kidney

Lipopigment bodies from kidney cortical tissue were isolated using the same

m ethod as above , except that a soft brown pe l let was removed from the

son icated homogenate by sed imentat ion at 70 g max i n a So rval l GLC-1

centrifuge for 5 min.

2.3 THIN SECTION ELECTRON MICROSCOPY

Al iquots of isolated l i popig ment were fixed i n 2% g lutaraldehyde and 3%

parafo rmaldehyde i n 0 . 1 M phosphate buffe r at pH 7.2 , post f ixed in 1 %

osmium tetroxide and embedded i n epoxy resin . Thin sections were stained

w i th u rany l acetate and l ead c i t rate and e x a m i ned i n a P h i l l ips 200

transmission electron microscope.

2.4 AMINO ACID ANALYSIS

Samples were subjected to hyd ro lysis in vacuo in 6 M g lass dist i l led HCI

contai n i ng 1 % phenol fo r 24 h at 1 1 0°C. The hydrolysates were dried in

vacuo over NaOH pel lets and the amino acids analysed on a Beckman 1 1 9L

amino acid analyzer. Cystine content was determined in some samples by

analysis of cysteic acid after oxidat io n wit h pe rfo rmic acid (H i rs , 1 967) .

P rote i n co nce ntrat i ons were calcu lated from t h i s data and also by the

method of Lowry, et al. , ( 1 95 1 ) . The samples analysed were (a) proteins

p recipitated from solut ions of l ipopig ments disso lved in 1 % LDS with co ld

aceton e , (b) ether p rec ip itated p roteo l ip ids extracted f ro m l i popigment

dissolved i n chloroform/methano l (2 : 1 , v/v) contain ing 1 00 mM ammonium

acetate, (c) the nonextracted material that precipitated at the i nterface during

the m odif ied Folch extract ion , and (d) l ipopig ment bod ies suspended i n

deion ized water that were dried to constant we ight in vacuo over NaOH

pellets.

Page 35: Biochemical studies on animal models of ceroid-lipofuscinoses

2.5 LITHIUM DODECYL SULPHATE POLYACRYLAMIDE G EL

ELECTROPHORESIS (LDS-PAGE)

1 5

LDS- 1 5% and 20% polyacrylamide ge ls, ( 1 .5 mm x 10 cm x 16 cm) , were

prepared i n a Protean Dual S lab Ce l l (B io- Rad , Rich mond, Ca) by the

method of Laemmli (1 970) , except that the bisacrylamide to acrylamide ratio

was 1 :29 w/w instead of 1 :37.5 w/w, and 1 0% w/w sucrose was added to the

main gel (Palmar, et al. , 1 986b) .

Fresh and frozen isolated l ipopigment proteins disso lved i n 1 % LDS at 2 mg

prote i n/m! were d i luted with de ion ized wate r and added to a solut ion of

boi led g l ycero l and b romopheno l blue to a fi na l conce ntrat ion of 1 2%

glyce ro l and 6 j.!g/m l of bromophenol blue. Lipopigment contain ing 1 5-25 llg

of protein in 50 Ill was loaded onto each lane of the gel . Samples contain ing

the l ipopigment proteins were not heated at any stage. E lectrophoresis was

carried out at a constant cu rrent, 8 mA, at 4°C, u nt i l the bromophenol blue

reached the bottom of the gel , i n approximate ly 1 7 h . Apparent mo lecu lar

weig hts of the prote i ns were determi ned by comparison of their mig ration

rates with those of mo lecu lar weight standards obtai ned from Sigma (Kit No.

MW-SOS 70L) .

2.6 SILVER STAINING OF POLYACRYLAMIDE G ELS

After e lectrophoresis the gels were fixed for 60 m in in 200 ml of 1 2% (w/v)

trichloroacetic acid. They were then washed for 60 min with 800 ml of 40%

methanol contain i ng 1 0% acetic acid , twice for 30 m in with 400 ml of 1 0%

eth ano l contai n i ng 5% acet ic acid and f i na l ly fo r 1 0 m i n with a 200 m l

so lut ion o f 3 .4 mM potass ium dichromate co ntai n ing 3 .2 m M n itr ic acid.

Afte r removal of a l l t h e oxid iz i ng agent from the ge ls by wash i n g with

deionized water, they were stai ned for 1 0 m in with 200 ml of 1 2 mM si lver

nitrate , rinsed for 2 m in with deion ized water and deve loped by successive

additions of port ions of a solut ion of 0 .28 M sodium carbonate contain ing

6.33 mM formaldehyde (0 .01 9%) . The fi rst development was for 1 m in , the

seco nd fo r 5 mi n and the th i rd was cont i n u ed unt i l the desi red stai n i ng

intensity was reached. Deve lopment was stopped by washi ng the ge ls for 5

m in with 400 m l of 5% (v/v) acetic acid. A l l steps afte r the addition of the

Page 36: Biochemical studies on animal models of ceroid-lipofuscinoses

1 6

s i lver n i t rate so lut ion we re carri ed out u nder a photog raphic safe l ight

(Kodak, Wratten series fi lter OB). Gels were then destai ned for 2 min with

200 ml of a solut ion of 30 m M potassium ferricyanide and 65 mM sodium

th iosulphate (Farmer's reducer) . After complete removal of th is reagent by

wash i ng with deion ized water, the gels were stained again with 1 2 mM si lver

n itrate , and developed as before.

2.7 CHEMICALS

Lith ium dodecyl su lphate (LDS) , 2-mercaptoethanol , bovine seru m albumin

(BSA) , lodogen (1 ,3,4 ,6-tetrachloro 3a,6a-diphenylg lyco luri l ) , Coomassie

Bri l l iant B lue R-250, (3-[Cyclohexylamino]- 1 -propanesulfon ic acid) (CAPS)

cyanogen bromide and molecular weight standards (Kit No . MW-SOS 70 L)

were obtained from Sigma (St . Louis, MO. U .S .A.) . Al l chemicals required for

si lver stain i ng were obtained from Bio-Rad (Rich mond, · CA. U .S .A.) except

fo r sucrose and t richloroacetic acid (TCA) which were · obtained from BDH

(Poo le , E n g land) . The s i lver n itrate was obtai ned fro m Ajax chemicals

( N . S . W . , Aust ral ia ) . The 2 , 5-d ipheny loxazo le ( PPO) and 1 ,4-b is [2-(5-

phenyloxazo lyl)]benzene (POPOPlwere also obtai ned from BDH . Adenosi ne

5'- d iphosphate , disodium (ADP) cat No . 1 0490 was obtained from United

States Biochemical Corporation (Cleve land , Ohio, U .S.A. ) . Sephadex G-25

f i n e g rad e , was obta i n ed from P h armac ia F i n e c h e mica ls ( U ppsala,

Swede n ) . Carr i e r free N a 1 25 1 in N aO H (1 00 mC i/m l ) , N C S t i ssue

so lub i l iser and 3H-amino acid mixtu re (code TRK.440) ( 1 .0 mCi/ml) were

obtained from Amersham International P .L.C. (Amersham , Bucks, Eng land) .

Po lyvinyl idene difluoride membranes (PVDF) were obtained from Mi l l ipore

( M i l l i pore Corp. Bedfo rd , MA. U . S . A . ) . DC-P iasti kofo l i en ce l lu lose TLC

sheets were from Merck ( E . Me rck, Darmstadt , West Germany) . Eag les

min imum essential media (MEM) (Cat. No. 1 0-1 0 1 ) and MEM vitamins (Cat.

No. 1 6-0 1 4-49) were from Flow Laboratories, Inc. (West Germany). Trypsin ,

f oetal bovi ne serum (FBS) and t ryptose broth were obtai ned from Difco

Laboratories (Detroit, M l , U . S .A) . P lastic 25cm2 tissue cu ltu re flasks were

from Nu nclon , l nterMed (Denmark) and leig hton tubes were from Kimax

(U .S .A.) . All water was purified through a Mi l l i-Q Reagent water system and

a Mi l l istak GS filter from Mi l l ipore, so that it had a min imum resistance of 1 0

M ohms/cm. All other reagents were of an analytical g rade and all so lvents

used were double dist i l led.

Page 37: Biochemical studies on animal models of ceroid-lipofuscinoses

1 7

C H A P T E R 3

LDS-PAGE BEHAVIOUR AND 1 251 RADIOLAB ELLING OF PANCREATIC

LIPOPIGMENT PROTEINS.

3.1 INTRODUCTION.

Analysis of l ipopig ment iso lated from pancreas, l iver, kidney and brain of

s h e e p affected w i t h ce ro id- l i pofusci nos is h as shown that 70% of t he

l ipopigment mass was protei n , most o f the remainder be ing neutral l ipids

and phosphol ip ids expected for the lysosome derived l ipopigment bodies.

Iso lated l ipopigment could be solubi l ised by sodium dodecyl sulphate on ly in

the prese nce of 5% 2-me rcaptoethano l . Subsequent separat io n of the

l ipopigment proteins by SOS-PAGE, showed a major band migrati ng with an

apparent molecu lar we ight of 3 .5 kDa at the l imit of reso lution of the gel ,

heterogeneous materia l between 5 .0 -9 .0 kDa and a band at 1 4 .8 kDa

(Palmer, et al. , 1 986b) . The PAGE behaviou r of these specific l ipopigment

prote i ns was furt he r i nvest igated . The presence of t he 3 .5 kDa band i n

affected but not i n control tissue homogenates indicated that i t was specific

to the disease . Its re lative si lver stai n ing i ntensity implied that it was a major

component of the iso lated l ipopigment. The si lver stain cou ld not however be

taken as a q u ant itative measu re of t hese p rote ins due to t he fact t hat

d iffe rent ia l se ns i t ivity of d iffe re nt prot e i n s to stai ns i s we l l documented

(Friedman, 1 982 ; Merri l , 1 986) .

The 1 4.8 and 3 .5 kDa lipopigment bands extracted from polyacrylamide gels

were shown to contai n s imi lar re lative amounts of tyrosi ne (S.M . Cooper,

pers . com m . ) . Radioi od i n at ion of pancre at ic l i popi g m e nt protei ns was

therefore i nvestigated as a means of measuri ng them quantitative ly and as a

method of obtain i ng a radiolabel led substrata.

Page 38: Biochemical studies on animal models of ceroid-lipofuscinoses

3.2 SPECIAL MATERIALS AND METHODS

3.2.1 1 251 RADIOLABELLING OF PANCREATIC LIPOPIGMENT

PROTEINS

18

An lodoge n (1 ,3 ,4 ,6 -tetrach lo ro 3a, 6a-dipheny lg lyco lu ri l ) so lution was

prepared by the method of Markwel l and Fox (1 978) . lodogen was disso lved

i n dich loromethane, (40 Jlg/ml) , 1 00 , 200, 300 , 500, 700 J.!l and 1 ml of this

solut ion were added to g lass vials and evaporated to dryness under nitrogen

at 25°C. Removal of the dichloromethane produced a film of lodogen on the

g lass vials. A 1 0 111 solution of 0 .05 M ammon ium acetate , pH 7.4, was

added to the vials fol lowed by 25 J.!Ci of Na 1 251 . After the addition of 200 Jll

of pancreatic l ipopig ment disso lved i n 1 % LDS ( 1 . 5 mg/ml) , the reactants

were incubated at 25°C for 1 , 2, 5, 1 0 , 1 5, 20 and 30 min. Care was taken to

ensu re that the reactants were i n contact with the lodogen fi lm on the vials.

The iod i nat ions were terminated by transfer ing t he reactants to 500 Jll of

0 . 1 % LDS and leavi ng them for a further 1 0 m in to al low the un incorporated

i odous i o n s to retu rn to mo lec u l a r i odi n e . I nco rporat i o n of 1 25 1 i nto

l ipopigment was measu red by the method described below. The mixture was

app l i e d to a Sep hadex G -25 co l u m n (3 .8 x 2 0 0 m m ) t h at h ad bee n

pretreated by the e lution of 1 ml of bovine serum albumin 3% (w/v) i n 0 . 1 %

LDS to prevent the non-specific absorption of the radiolabel led protein . The

fi rst e luted radioactive peak was col lected and the protei n precipitated by

acetone (1 0 : 1 , v/v) . The precipitated protei n was re-so lubi l ised in 1 % LDS

and added to u n labe l l ed pancre at i c l i pop ig m e nt p rote i n fo r fu rt h e r

experimentation.

3.2.2 D ETECTION OF THE RADIOLABEL

Incorporation of 1 251 was determi ned by TLC. A 1 0 Jll al iquot of the label led

l ipopigment was spotted onto DC-Piastikfo l ien cel lu lose TLC strips (1 x 1 4

cm) and developed in trichloroacetic acid 1 2% (w/v). The dist ribution of the

rad ioact iv ity was determi ned by cutt i ng the strips i nto 1 cm pieces and

cou nt ing the gam ma emissions on a Nuclear Enterprise N E 1 600 gamma

coun te r. The p rote i n remai n ed at the o rig i n and the free iodine ( 1 25 1 )

chromatographed with the solvent front (Salaci nski , et al. , 1 981 ) . Proteins in

samples of iodinated lipopigment were also separated by LDS-PAGE. The

dist ribution of radioactivity in po lyacrylamide gels was determ ined by cutti ng

the gels i nto strips, counting the gamma emissions as above , and compari ng

the count distribution with si lver stained side strips.

Page 39: Biochemical studies on animal models of ceroid-lipofuscinoses

19

3.3 RESULTS

3.3.1 LDS-PAGE behaviour of l ipopigment proteins

So lub i l i ty of l i popig ments in LDS i n t h e abse nce of 2 -me rcaptoethanol

a l lowed t h e PAGE behaviour of the l i pop ig ment prote i ns to be fu rt he r

i nvest igated. Pancreatic l ipopigment protei n s , separated by LDS-PAGE ,

were characterised by a major band with a n apparent mo lecular weight of

3.5 kDa. Othe r bands at 1 4.8 and 24 kDa were also noted and considered

specific to the l ipopigment. However, the proportions of the latter two bands

varied between preparations and from different gels of the same iso late (Fig .

3. 1 ,A and Fig .4 .2) . The presence or absence of 5% 2-mecaptoethanol in the

sample had no i nf luence on the pattern of the major l ipopigment bands

obtai ned ( Fig . 3 . 1 , B).

(A) A

Fig 3.1 A, B

B A B

(B)

-24

1 4 . 8

-14.8 1 9-5

-3.5 I - 3 . 5

Si lver stained LDS-20% PAGE of (A) pancreatic l ipopigment prote in (lane A) and the same sample run under identical conditions on another ge l ( lane B) , ( 1 5 J..Lgllane ) . ( B) P ancreatic lipopigment protein in the presence ( lane A) and absence (lane B) , of 2-mercaptoethanol, (25 J..Lg/l ane) . The numbers o n t h e r ig ht hand side i nd icate apparent molecular weights calculated from the migration of molecular weight markers.

Page 40: Biochemical studies on animal models of ceroid-lipofuscinoses

20

3.3.2 Incorporation of 1 251 into lipopigment proteins

I ncorporation of radioactive iodine into l ipopigment protei n was optimal at 1 2

J.19 o f l odogen/v ia l ( Fig . 3 . 2 A ) . At t h i s co ncentrat i on , a t ime cou rse

experiment showed that 1 0 min was the m in imum t ime requi red to obtain a

maximum incorporation of 70% of the radioactive iodine i nto the l ipopigment

proteins at 25°C (Fig . 3 .2 B) .

Fig.3.2 A,B

A 80 75 70

"0 65 CD 60 -as 55 ... 0 c. 50 ... 0 4 5 u 40 .E

.]) 35 C\J 30 ..- 25 � 0 20

1 5 1 0

5

8 8 0 75 70

"0 65 CD 60 -� 55 &. 50 0 45 u 40 .E 35 lli 30 C\J ..- 25 � 0 20

l 5 1 0

5

5 10 1 5

5 10

20 25

llQ lodogen/vial

1 5

Time (mln)

20

30 - 35 40

25 30

Incorporation of 1 25 1 at various lodogen concentrations, (A) and the incorporation of 1 251 at 1 2 Jlg lodogen/vial at various time intervals , (B). lodinations were carried out using total pancreatic lipopigment dissolved in 1 % LDS at ( 1 .5 mg/ml) and 25 Jl.Ci Na 1 25 1 , incorporat ion was determined by the dpm that remained at the o rigin of the TLC strips compared to the total dpm applied. Each point on the graphs represents individual estimations.

Page 41: Biochemical studies on animal models of ceroid-lipofuscinoses

21

Fresh ly iodinated pancreatic l i popigment proteins separated by LDS-PAGE

showed a s im i lar d istri but io n of the 3 .5 , 14 .8 and 24 k Da l i popi g ment

protei ns to that of non-iodi nated l ipopigment (Fig. 3.3 , lane A and Fig .3 . 1 A,

respectively). This i ndicated that the iodination procedure had no influence

on the subsequent separation of these proteins. However, on storage of the

labe l led l i popigment for pe riods longer than a week , agg regati on at the

stacking ge l/main gel i nterface and smearing along the ge ls were sometimes

observed. With some preparat ions the complete absence of the 3.5 kDa

lipopigment protei n was noted (Fig . 3.3, lane B).

Fig.3.3

A B ,.. ... . -

• •

-24

-1 4.8

-3.5

Si lver stained LDS-20% PAG E of 1 25 1 rad i o la b e l led pancreatic lipopigment proteins (lane A) . An aliquot of the same sample after it had been stored at -20°C for a period of one week (lane B) . The numbers on the right hand side ind icate apparent molecular weights calculated from the migration of molecular weight markers.

Page 42: Biochemical studies on animal models of ceroid-lipofuscinoses

22

Dist ri bution of 1 25 1 amongst f resh ly radio label led pancreat ic l ipopigment

protei ns separated by LDS-PAGE showed that the 3 .5 kDa l ipopigment band

contai ned on ave rage 35% of the total labe l that entered the gels with the

1 4.8 kDa band account ing for 22% and the material between the 1 4.8 and

3.5 kDa bands contain ing a further 1 0% of the labe l (Table 3 . 1 . ) .

Table 3.1

Polypeptide bands

above 1 4.8 kDa

1 4.8 kDa

1 4.8-3 .5 kDa

3 .5 kDa

The distribution of 1 25 1 amongst radiolabelled

pancreatic lipopigment proteins

32.8±3.8

21 .8±0.5

1 0 . 1 ±3.2

35.3±6.3

a. Percentage of the total cou nt that entered the L DS-20% polyacrylamide gel ±s .e.m.

for three separate estimations. Between 80-95% of the freshly iodinated lipopigment

proteins were shown to enter the gels as determined by the recovered radioactivity.

Page 43: Biochemical studies on animal models of ceroid-lipofuscinoses

23

3.4 DISCUSSION

Lipopigment bodies can be iso lated from pancreatic t issue re latively free

f rom c o nta m i nat i o n w i th o t h e r s u b ce l l u l a r o rg an e l l e s a n d d e b ri s .

L ipopig me nt prote i ns from th is t issue also g ive t h e best separation o n

po lyac ry l a m ide g e l e lect ro p h o re s i s . For t h e s e reaso n s pancre at ic

l ipopigment was chosen for the LDS-PAGE and radio label l ing studies.

The s imi lar e lectrophoretic patterns obtained when total l ipopigment prote in

d isso lved i n 1 % LDS i n the prese nce or absence of 2-mecaptoethanol

i ndicated that the 3.5 kDa and 1 4 . 8 kDa l ipopigment p rote ins were not

subu n i ts of a larg e r agg regate h e ld toget h e r by i nte rmo lecu lar cyst ine

disu lph ide bonds. However, the variabi l ity of the 24 and 1 4.8 kDa bands

betwee n different preparations and from different gels of the same iso late

suggested some form of aggregation that was resistant to dodecyl sulphate

and reduci ng conditions.

The rep lacement of aromatic hydrogen by e lectrophi l ic iodine in activated

aromat ic systems (tyrosi ne , h istid i ne , t ryptophan) i s widely used to labe l

prote ins . E lectroph i l ic iodine can be generated by a variety of oxidizi ng

agents : ch lo ramine-T (G reenwood and Hunte r, 1 963) , hydrogen peroxide

( H u b b a rd and Co h n , 1 9 72 ) , ch lo ri ne gas ( B utt , 1 9 7 2 ) , and sod i u m

hypochlorite (Redshaw and Lynch , 1 974). These form t h e basis of most

avai lable methods of radio-iodi nation . However, the use of oxidizing agents

that come into contact with protei ns i n so lution can lead to oxidative damage

to the prote ins . Lactoperoxidase and lactoperoxidase-catalyzed iodinations

using hydrogen peroxide alone or generated by g lucose oxidase systems

require the addition of extraneous protei n to the system (Marchalonis, 1 969).

This extraneous protei n which can itself become hig hly labe l led during the

i od inat i o n process , provides an addit ional compl ication . An a lternative

method e mploys conjugat ion labe l l i ng whe re N-succi n i midyl p ropionate

labe lled with iodine is attached covalently to lys ine residues or to the amino­

terminus of the protein (Bo lton and Hunter, 1 973). Although this techn ique

offe rs s o m e advantag es ove r t h e c h l o ram i n e-T and l actoperoxidase

method s , i t is a ve ry tedi ous m ethod of iod i nation . The i nt roduction of

1 , 3 ,4 , 6-tetrach lo ro-3a,6a-dipheny lg lyco lur i l ( l odogen) as an i odi nat ing

Page 44: Biochemical studies on animal models of ceroid-lipofuscinoses

24

reagent fo r so lub le and membrane protei ns provided a method of protein

i od i nat i o n u n d e r m i ld cond it i o n s , wi t h out sacri f ici ng ce l l u la r i nteg rity

(Markwel l , and Fox, 1 978). As the lodogen method was techn ical ly simpler

to use , and because it did not require the addition of extraneous protein or

st ro ng oxidants to i n it iate the react ion , nor a stro ng reduci ng reagent to

t e rmi nate i t , i t was chose n as the m e t h od fo r the rad i o i od i n at i on of

pancreatic l ipopigment proteins.

lt was reasoned that since LDS is a denatu ring detergent, 1 251 radio label l ing

of po lypept ides i n i t shou ld i nco rpo rate iod ine equal ly i nto a l l ty rosine

residues. Pre l im inary ami no acid analysis i ndicated that the 1 4.8 and 3.5

kDa l ipopig ment bands contained s imi lar mo lar ratios of tyrosine residues

( S . M . Coope r , pe rs . com m . ) . The refo re , t h e d ist ri but i o n of rad io labe l

amongst total pancreat ic l ipop igment p rote i ns separated by LDS-PAGE

should provide at least a semi-quantitative estimate of these polypeptides.

The 1 4.8 and 3 .5 kDa ovine l ipopigment prote in bands together accounted

fo r 67% of the radioactive label that entered the LDS-PAG E (Table 3. 1 ) ,

suggest ing that they were the dominant ly stored chemical species i n ovine

ceroid-lipofuscinosis. The resu lts also showed that si nce the 3.5 kDa protein

band is the major contributor to the l ipopigme nt protein mass , and is of low

molecu lar weight , it is present in total l ipopigment in a higher molar ratio than

any othe r co mponent . A va lue of 71 moles % was calcu lated from the

radioiodination data presented by assuming an average molecu lar weight of

50 kDa for the l ipopigment protei ns above 1 4.8 kDa and of 5 .0 kDa for those

between the 1 4.8 and 3.5 kDa l ipopigment bands. Exploitation of this molar

dominance enabled the identification of the 3 .5 kDa lipopigment protein by

quantitative amino acid sequence analysis, which is described i n the next

chapte r. The loss of the 3.5 kDa prote i n , which was considered to be the

major l ipopig ment prote i n , on sto rage of the labe l led l ipopigment (Fig.3.3,

lane B) suggested that the radioiodination of l ipopigment was not a suitable

method of obtain ing a label led substrata.

Page 45: Biochemical studies on animal models of ceroid-lipofuscinoses

C H A P T E R 4

IDENTIFICATION OF THE 3.5 kDa LIPOPIGMENT BAND

4.1 I NTRODUCTION

25

Methods avai lable for separation and further characterisation of l ipopigment

proteins have been l imited by the solvents that were able to dissolve them.

O n ly fo rmic aci d , 1 % SOS in t h e p rese nce of 5% 2 - m e rcaptoethano l

( Pal m e r, et al. , 1 986b) and 1 % LDS i n the presence or absence of 2-

mercaptoethanol (Chapter 3) disso lved the l ipopigment protei ns. Solubi lity

i n the latter so lutions enabled separation of these proteins by polyacrylamide

ge l e lectrophoresis which showed a major band at 3.5 kDa and bands at

1 4.8 and 24 kDa. These components were however unable to be separated

by ge l fi ltrat ion chromatog raphy o n B io-Gel P- 1 0 e luted with formic acid

( D . N . Palmer, pers. comm. ) . Results presented i n the previous chapte r

showed that the 3.5 kDa band was not a subunit of a larger aggregate held

together by cysti ne disulph ide bonds. lt was also shown to be the major

contributor to the total l ipopigment protein mass. Separation of the 3.5 kDa

compo nent from the othe r l ipop igment p rote i ns by s ize exclusi o n h igh

pressu re l iquid chromatog raphy (HPLC) was investigated.

4.2 SPECIAL MATERIALS AND METHODS

4.2.1 SIZE EXCLUSION HIGH PRESSURE LIQUID

CHROMATOGRAPHY (H PLC)

Lipopigment prote in was obtai ned from total l ipopigment d isso lved i n 1 %

LDS by acetone precipitatio n in 20 vol of co ld acetone. After washing with a

further 1 0 vol of cold acetone and with deionized water, the precipitate was

redissolved i n 1 % LDS, fi lte red through a 0 .4 micron fi lter (Mi l l ipore) and 1 -2

mg al iquots were injected onto either a TSK G2000 SW (7.5 x 200 mm) or

TSK G2000 and G4000 SW HPLC columns connected in series (Toyo Soda

manufactu ring Co. Tokyo) with a guard co lumn packed with 'Protein 1- 1 25'

(Waters Associates, Mi lford MA). The co lumns were eluted with 0 . 1 % LDS

Page 46: Biochemical studies on animal models of ceroid-lipofuscinoses

26

at a f low rate of 0 .6 ml/m in . Detection was at 280 nm us ing a Model 450

Variable Wavelength Detector (Waters Associates, Mi lford MA). The eluted

peaks were co l lected and freeze dri ed. After redissolving in deionized water

al iquots were analysed by LDS-PAGE as descri bed in section 2.5 and the

rest stored at -20°C unt i l requ ired.

4.2.2 AMINO ACID SEQUENCING

Fract ions e luted f rom the H P LC co lumns that contai ned t he l ipopigment

protei ns were precipitated with 20 vo l of cold acetone. After washing with a

fu rt h e r 1 0 vol of co ld aceto n e , samples were dissolved i n disti l led 98%

formic acid at a protein concentrat ion of 50 Jlg/m l , and al iquots , 50- 1 00 Jll ,

were loaded onto po lybrene treated g lass filter disks that had been through

three cycles of a standard ABI program 03RPRE (Appl ied Biosystems I nc. ,

Foster city CA. U .S.A) . Sequenci ng was done on an Applied Biosystems

470A gas phase sequence r coup led to a 1 20A PTH an alyzer us i ng a

standard ABI program 03RPTH . Aliquots of precipitated prote in were also

subjected to quantitative amino acid analysis as described in section 2 .4 to

al low an estimation of the total protei n loaded.

4.2.3 R EPETITIVE AND INITIAL YIELD CALCULATIONS

Yie lds of the phenylthiohydantoin (PTH) amino acids produced in the Edman

deg radat ion at each cycle were calcu lated from comparison with fresh ly

prepared PTH amino acid standards. Repetitive yields were calcu lated from

l inear reg ression best fit plots of the logarithms of the yie lds at each cycle.

In it ial yie lds were read from the intercept of the repetitive y ie ld slopes with

the y-axis .

4.3 R ESULTS

4.3.1 Size exclusion HPLC of l ipopigment proteins

Total l ipopigment e luted as a number of 280 nm absorb ing peaks on size

exclusion HPLC using a TSK G2000 SW column run in 0 . 1 % LDS (Fig. 4. 1

A). When pooled fractions from these peaks were exami ned by LDS-PAGE,

the peak and shoulder that e luted at 30 m in at the size exclusion l imit o f 50

k D a , was s h own to co nta i n a l l t h e spec i f ic l i popig m e n t prote i ns i n a

Page 47: Biochemical studies on animal models of ceroid-lipofuscinoses

27

distribut ion sim i lar to that fou nd in total l i popigment. Extending the size

range of the separation by connecti ng the TSK G2000 SW co lumn in series

with a TSK G4000 SW column made no difference to this result and al l the

specific l ipopigment proteins e luted betwee n 60-90 min at a size exclusion

l im it of 400 kDa (Fig . 4 . 1 B ,C). Although the molar ratios of the 1 4.8 and 3.5

kDa proteins varied from fract ions a-c, they were unable to be purified (Fig.

4 .1 C). The presence of 1 00 mM ammonium acetate in the 0 . 1 % LDS buffer

was able to move the e lution of the l ipopigment proteins along the size range

of the columns. They were , however, unable to be separated from each

other by size exclusion HPLC in LDS.

A 0.1

E c:: 0 CO N Cll (,) c:: Cl) .0 ... 0 Cll .0 <

30 60 Time (min)

c

B 0.1

E c:: 0 CO N Cll (,) c:: Cl) .0 ... 0 Cll .0 <

a

30

b

a b c

60 90

d e

1 20 Time (min)

c d e

f g

f 9

I I

Fig.4.1 A,B,C HPLC profile of l ipopigment proteins eluted from the TSK G2000 SW (A) and the TSK G2000 and G4000 SW columns connected in series (B). The columns were eluted with 0 . 1% LDS at a flow rate of 0.6 mVmin. The eluate was monitored at 280 nm. LDS-20% PAGE of pooled fractions a-g from the columns connected in series (C) .

Page 48: Biochemical studies on animal models of ceroid-lipofuscinoses

28

LDS-PAGE of the l ipopigment proteins eluted from the size exclusion HPLC

co lu m n s always s h owed the d o m i nance o f t h e 3 . 5 kDa protei n band.

However, as noted i n the previous chapter, the amounts of the 1 4.8 and 24

kDa p rote in bands varied between l ipopigment prote i n p reparatio ns and

between gels of the same iso late (Fig . 4.2) .

Fig.4.2

A B C D

-24

-14.8

-3.5

Si lver stained LDS-20% PAGE of l ipopigment proteins from pancreas (A) , kidney (B) , liver (C) , and brain ( D) after acetone precipitation and size exclusion HPLC ( 1 5 J.Lg/lane) . The numbers o n the right hand side indicate apparent molecular weights calculated fro m the migration of molecular weight markers.

Page 49: Biochemical studies on animal models of ceroid-lipofuscinoses

29

4.3.2 Ami n o ac id seq uen c i n g of t h e molar domi nant l ipopig ment

protein

Because of the difficu lty i n separating the 3.5 kDa l ipopigment band from the

othe r com po n e nts , f ract ions e luted f ro m t h e H P LC co ntai n i ng a l l the

l i pop ig ment p rote i n s we re loaded o nto the amino acid sequencer. Th is

exploited the molar dominance of the 3 .5 kDa protei n i ndicated by si lve r

stain ing of g e ls and 1 251 labell ing (Chapter 3). lt was reasoned that should

a clear sequ ence e merge, then a comparison of the in itial sequence yield

obtained with the total amount of l ipopigment protein loaded should give an

est imate of t h i s dom i nant prote i n 's contribut ion to the total l ipopigment

protei n mass.

When total pancreat ic l ipo pigment p rote i ns after HPLC treatment were

l oaded o nt o t h e a m i no ac id seq u e n cer , a c lear major seque nce was

obtained (Fig . 4.3).

Cyclel Asp

Ala

Cycle 1 0

Gly

Fig.4.3

DPTU Cycle 2 Cycle3

Asp

lie

DPTU

DPTU

4 ' Cycle 1 1

Ala Cycle 1 2

Gly

DPTU

DPTU

DPTU

V '

Cycles 1 ,2,3, 10, 1 1 and 1 2 obtained when pancreatic l ipopigment protein containing 57.5x1 o-9 moles of hydrolysable amino acids was loaded onto the sequencer.

Page 50: Biochemical studies on animal models of ceroid-lipofuscinoses

30

The seq u e nce was determ i ned to 40 residues i n one experi m e nt and

confirmed to 24 and 20 residues in two other analyses. The same sequence

was det e rm i ned to 1 6 res idues i n k id ney and to 1 8 residues i n brai n

l ipopigm ents . lt was also determ i ned to 1 4 residues in l iver and kidney

l ipopigm ent prote ins and to 1 7 i n b rai n l ipopig ment proteins iso lated from

LDS solut ions of total l ipopigment by acetone precipitat ion alone, without

subsequent s ize exclus ion H PLC, with no s ign if icant diffe rence i n signal

clarity.

The sequence found was as fol lows:

N H 2-As p-I le-Asp-Th r-Aia-Aia-Lys-Phe-l le-G ly-Ala-G ly-Ala-Aia-Thr-Val­

Gly-Vai-Aia-Giy-Ser-G iy-Aia-Giy-lle-Giy-Th r-Val-Phe-Giy-Ser-Leu-lle-lle­

Gly-Tyr-Aia-Arg-Asn-Pro-.

This sequence is identical to the fi rst 40 ami no-terminal residues of the

highly hydrophobic DCCD reactive proteolipid (also known as subunit c, the

l ipid bind ing subunit and subunit 9) of bovi ne and human mitochondrial ATP

synthase (EC 3.6. 1 .34) , a protein of 75 amino acids with a mo lecu lar weight

of 7.608 kDa that is identical i n both species (Sebald , et al. , 1 979; Gay and

Walker, 1 985) .

There was no sudden disjunct ion i n the repetitive yields obtained for this

peptide from any of the tissues examined , indicat ing that al l the protein that

i n it ial ly coupled was at least 40 amino acids long , i .e . early cycles of the

sequence did not contai n amino acids ari si ng from smal ler ami no-terminal

fragments of the same peptide (Fig . 4.4) .

Page 51: Biochemical studies on animal models of ceroid-lipofuscinoses

31

The molar q uantity of the sequenced peptide that in i t ia l ly cou pled i n the

sequencer was calculated from the yie lds of the PTH amino acids (Fig . 4 .4).

en Q) 0

A 1 000

E 1 oo 0

.5:2 a...

1 0+---�-----+----�----+---�r----+----�--�

"' Q) 0

B 1 000

E 100 8 a:

0 5 1 0 1 5 20 25 30 35 40

Cycle number

� 0

c 1 000

E 100 8 a::

1 0+---+---+-____,f----!---+--+____,f----!-� 0 2 4 6 8 10 12 14 16 18 10+----+--._._-+---+---!---+--+-----i 0 2 6 8 10 12 14 16

Fig.4.4

Cycle number Cycle number

Th e PTH amino acid y ie lds of the major sequ ence o btained f rom pancreas (A), brain (B) , and kidney (C) lipopigment protein. Initial yields were read from the intercept of the repetitive yield slopes with the y-axis.

Page 52: Biochemical studies on animal models of ceroid-lipofuscinoses

32

E st i mates o f t h e co nt r i but i o n of t h e p e pt ide sequenced to t h e tota l

l i popigment p rotei n mass was made by compari ng the i n it ial y ie ld of the

sequenced peptide , with the total amount of l ipopigment protein loaded onto

t h e seque nce r . Fo r e xam p l e , w h e n pancreat i c l i pop igment p rote i ns

contai n ing 57.5x1 o-9moles of hydro lysab le amino acids were loaded onto

the sequencer, 0 .579x1 o-9moles of peptide coupled as the above sequence

(Fig . 4.4). As this peptide is at least 40 amino acids long , it must contribute

at least 40 X 0 .579x1 o-9moles Of ami no acids = 24.2X1 o-9moles, to the total

l ipopigment p rote in mass. Therefo re the sequenced peptide must account

for at least 24.2x1 o-9moles X 1 00 = 40.3% Of the total l ipopigment p rotein.

57.5x1 o-9moles

Simi lar estimates for the contribution of the sequenced peptide to the total

l ipopigment protei n mass from kidney and brain are shown (Table 4. 1 ) .

Table 4.1 Est i mates of the contribut ion of the sequenced pept ide to the total lipopigment protein masses

Source o f

l ipopigment

Pancreas

1 .

2 .

3 .

Kidneye

1 .

2 .

Brain

1 .

No . of

cycles

4 0

2 4

2 0

1 6

1 3

1 8

Repet it ive yielda

( % )

9 2 . 8

92 . 7

NDd

9 4 . 3

8 9 . 5

8 5 . 3

E s t i m a t e o f

the sequenced

p e p t i d e ' s

c o n t r i b u t i o n

t o t h e t o t a l

l i p o p i g m e n t

protein ma s s

( % ) b ( % ) c

4 0 . 3 7 5 . 6

3 6 . 5 6 8 . 4

4 0 . 7 7 6 . 3

4 1 . 0 7 6 . 9

3 8 . 7 7 2 . 6

2 6 . 4 4 9 . 5

a. The repetitive yields were calcu lated from l inear regression best fit plots of the logarithms of the yields at each cycle.

b. Calcu lated by mult iplying the initial yield by 40 (the length of the sequenced peptide) and expressed as a percentage of the total hydrolysable amino acids loaded onto the sequencer.

c. Calculated by multiplying the initial yield by 75 (the length of the full subunit c) . d. Pancreatic l ipopigment isolated from three affected sheep. e. Kidney lipopigment isolated from two affected sheep.

Page 53: Biochemical studies on animal models of ceroid-lipofuscinoses

33

A m i n o r sequence was a lso dete rm i ned i n ear ly cycles of pancreat ic

l ipopigment p rotein analyses (Fig .4 .3) . l t was as fo l lows:

NH2-Aia-Pro-Giu-Tyr-X-Ser-X-X-Aia-Met-Val- [X=u nassig nab le].

This sequence was not clearly d iscern ib le in l ipopigment protei n from any

other tissue due to high background levels.

Quantitative amino acid analysis of total l ipopigment protein from pancreas,

kidney and brai n showed a h igh content of alan ine , g lyci ne , and leuci ne

residues. Th is composition was s im i la r to that of the fu l l subunit c (Table

4.2).

Table 4.2 The amino acid composition, in moles % of total lipopigment protein and the full subunit c ot mitochondrial ATP synthase.

Total lipopigment

Amino acid Pancreas a Kidneyb Live� Full subunit cf

Asp 5 . 3 5 . 6 5 . 2 4 . 0 Thr 6 . 2 6 . 1 5 . 1 4 . 0

Ser 5 . 3 6 . 0 6 . 0 6 . 7

Glu 5 . 1 4 . 9 6 . 0 4 . 0 Pro 2 . 7 2 . 0 4 . 1 1 . 3

Cys 0 . 5 NDd ND 1 . 3

Gly 1 1 . 8 1 1 . 0 1 0 . 9 1 4 . 7

Ala 1 2 . 3 1 2 . 2 1 2 . 2 1 7 . 3

Val 8 . 3 7 . 4 5 . 7 5 . 3 Met 2 . 7 2 . 7 3 . 3 4 . 0 I le 8 . 5 8 . 2 6 . 4 9 . 3 Leu 1 2 . 1 1 2 . 2 1 3 . 4 1 2 . 0

Tyr 4 . 3 5 . 1 3 . 6 2 . 7

Phe 7 . 9 8 . 2 8 . 4 9 . 3

His 1 . 2 1 . 1 1 . 5 0

Lys 3 . 0 3 . 5 4 . 1 2 . 7

Arg 2 . 8 3 . 8 4 . 1 1 . 3

a. Mean of 7 estimations b. Mean of 4 estimations c. Values taken from the cDNA sequence of the ful l ovine prote in (Medd and Walker,

unpublished) d. Not determined

Page 54: Biochemical studies on animal models of ceroid-lipofuscinoses

4.4 DISCUSSION

34

Lipopig ment protei ns were unable to be separated by size exclusion HPLC

i n LDS . Su rpris i ng ly , the l ipop ig ment p rote i ns with apparent mo lecu lar

masses of 3.5, 1 4.8 and 24 kDa seen on PAG E eluted at size exclusion

l imits of up to 400 kDa (Fig .4. 1 ). This was possibly due to the l ipopigment

proteins migrating i n large dodecyl sulphate micel lar aggregates. Difficu lties

in separating and purifying the l ipopigment protei ns led to the non-tradit ional

approach of loadi ng the prote ins as a mixture o nto the sequencer. The

approach was based on the rationale that as the major low molecu lar weight

3 .5 kDa p rote i n was p resent i n h igher mo lar quantiti es than any other

component, the major sequence obtained should therefore be of this protein .

The sequence obtained was identical to the fi rst 40 amino-terminal residues

of a high ly hydrophobic protei n , subunit c of the mitochondrial ATP synthase.

This protei n's l ipid-l ike solubi lity in neutral chloroform/methanol mixtures has

led it to be classif ied as a proteol ip id (Folch and Lees, 1 951 ) . This is an

operational defin it ion that does not imply the presence of covalently bound

l ipids.

T h e seque nci ng strategy n ot o n ly a l lowed ide ntif icat ion of the major

l i po pigment p rote i n , but also enab led est imat ions to be made as to the

contribution of this peptide to the total l ipopigment protei n mass. This was

ach i eved by co m pari ng the i n i t ia l y ie ld i n t he seque ncer with the total

amount of p rote i n loaded. Values betwee n 26-4 1 % we re obtai ned as

estimates of the sequenced peptide to the total l ipopigment protein masses

fro m the ami n o -termi na l seque nces obtai n ed (Table 4 . 1 ). These are

min imum rathe r than actual values s ince the i n itial reactions of the Edman

chemistry used in the sequencer are not quantitative and can vary between

sam ples (Edman and Begg , 1 967) , and also because the length of the

sto red peptide remained to be established. The molecular weight of a 40

res idue pept ide i s c lose to the 3 . 5 kDa d e mo nst rated by LDS-PAG E .

However, as s im i lar proteol ip ids are known t o g ive anomalous mo lecular

weight estimations on dodecyl sulphate po lyacrylamide gel electrophoresis

( Farre l l , et al. , 1 988) , the resu lts obtai ned may not i nd icate the t rue

molecu lar weight , or the length of the sequenced peptide. There are two

possible explanations for such an anomaly. Fi rst a high detergent to protein

Page 55: Biochemical studies on animal models of ceroid-lipofuscinoses

35

ratio i n the migrat ing mice l les, a consequence of the extreme hydrophobic

natu re of t he p rote i n maki ng it b i nd m o re than the normal amount of

detergent which resu lts i n a higher charge to mass ratio than normal (Lees,

et al., 1 979 ) . T h e seco nd re lates to i nco rrect assig n ment of t he low

molecu lar weight standards used to calibrate the apparent molecu lar weights

of this protein (Kratzin , et al., 1 989) .

Total l ipopigment p rote in contai ned high contents of g lyci ne , alanine and

leuci ne (Table 4 . 2 ) , consiste nt with a h ig h p ro po rtion of the sequenced

peptide bei ng derived from subunit c of mitochondrial ATP synthase. The

relative proportion s of the amino acids did not allow any conclusions to be

drawn as to the length of the stored peptide . The presence of h istid ine

i ndicated that other minor proteins were also p resent, as h istidine does not

occur i n subun it c of mitochondrial ATP synthase. No other mitochondrial

ATP synthase components were detected in the sequence studies.

The minor sequence detected is related to the amino-terminal sequence of a

1 6 kDa protei n isolated from mouse gap junction preparations (Walker, et

al., 1 986) and to residues 7- 1 7 of the p roteo l i pid iso lated from bovi ne

vacuolar (chromaffi n g ranule) ATPase (Walker, et al., 1 986 ; Mandel , et al.,

1 988 ; Dermietzel , et al., 1 989). The sign ificance of this minor sequence is

not yet known . Its presence in l ipopigment cou ld be due either to m inor

contamination by membranes contain ing gap junctions or to the presence of

a proteolipid fragment from a vacuolar ATPase.

Subunit c of mitochondrial ATP synthase has on ly previously been detected

i n mitochondria as part of the inner mitochondrial membrane F0 component

of the ol igomeric ATP synthase complex (Sebald and Hoppe, 1 981 ; Walker,

et al., 1 990) . Lysosomes and other subce l lu lar o rgane l les also contai n

o l igomeric p roton pumping p rotei ns with ATPase activity belong ing to a

class of vacuolar ATPases (Bowman, et al., 1 988a,b; Manolson , et al., 1 988;

Zimn iak, et al., 1 988). Lysosomal ATPase contains a subunit related , but

not ident ical to the mitochondrial subun it c proteo l ip id (Moriyama and

Nelso n , 1 989) . The protei n detected i n l ipopigment bodies is therefore not

part of a lysosomal ATPase.

Page 56: Biochemical studies on animal models of ceroid-lipofuscinoses

36

The fu l l subun it c has properties s imi lar to the specifically stored 3.5 KDa

l ipo pigment prote in . Both share the properties of poor Coomassie blue dye

stai n ing and aggregation behaviour on dodecylsulphate polyacrylamide gels

(Palmer, et al. , 1 986b; Fi l l ingame, 1 976 ; Graf and Sebald , 1 978; Sebald and

Hoppe , 1 981 ). Physical properties described as being characteristic of the

l ipopigment stored i n the ce roid- l ipofusci noses, are also simi lar to those of

the full subunit c. These include a variable pH dependent

ch loroform/methano l extractab i l ity and s im i lar th in layer ch romatography

mig ration behaviour to that of the so called "Schiff base polymer" that was

thought to be formed as a result of l ipid peroxidation (Sierra and Tzago loff,

1 9 7 3 ; S i akot o s a n d K o p p a n g , 1 9 73) . T h e co m p l et e e xtract i o n of

l ipop igments from Batten's d isease in ch loroform/methano l as wel l as the

apparent extraction of autofluorescent material from histolog ical preparations

i n acid i fied ch lo roform/ethano l has been documented (Srivastava, et al. ,

1 982). However, the l ipid l ike behaviour of the proteol ipid, poor Coomassie

dye stai n i ng and a tendency to g ive inaccu rate protein estimations by the

Lowry method (Sebald and Hoppe, 1 981 ) may help to explai n why this type

of p rotein was not recognised as being associated with these d iseases in the

past.

The data presented in this chapter does not i ndicate how long a fragment of

the mitochondrial subunit c proteol ipid is present i n isolated l i popigment. If it

is l ittle more than 40 amino acids then it must account for at least 26-41 % of

the total l ipopigment protein mass. If it is the ful l protein (7.608 kDa) , then it

accounts for 50-77% (Table 4. 1 ) , and some of the highe r mo lecular weight

l ipopigment bands that are seen on LDS-PAGE are l ikely to be aggregates

of subunit c. Aggregation in dodecy lsulphate is a characte ristic property of

the fu l l p rote i n (Sebald and H o p pe , 1 981 ) , and cou ld acco unt fo r the

anomalous LDS-PAGE and HPLC behaviour of the l ipopigment proteins.

Page 57: Biochemical studies on animal models of ceroid-lipofuscinoses

C H A P T E R 5

THE CARBOXYL-TERMINAL DETERMINATION OF THE MAJOR

STORED PROTEIN AND CHARACTERISATION OF THE OTHER

LIPOPIGMENT PROTEINS

5.1 INTRODUCTION

37

When total l i pop ig ment prote i n was loaded onto the sequencer , a c lear

sequence was identified. This sequence was shown to be identical with the

f i rst 40 a m i n o -te rm i na l res i d u e s of b o vi n e and h u man s u b u n i t c of

mitochondrial ATP synthase (Chapter 4) . A min imum estimate of 40% was

made fo r the contri bution of the sequenced protein to the total pancreatic

l i popigment protein mass on the basis that the fu l l stored protein was at least

40 residues lo ng . H owever, the sequenci ng stud ies described gave no

i ndication that the carboxyl-terminal had been reached. S imi larity between

the physical p ro pert ies of the fu l l subu n it c proteo l ip id , and l ipopigment

bodies stored i n the ceroid- l ipofusci noses , suggested that the ful l p rotei n

might be stored . This chapter describes the carboxyl-terminal determination

of the major sto red p rotein and further characterisation of the 1 4.8 and 24

kDa l ipopigment protein bands. Identification of subunit c, a proteol ipid , as

t h e majo r sto red l i pop ig m e nt p rote i n co m p o nent , e n abled its fu rthe r

p u r i f icat ion f ro m l i p o p ig m e nt sto rage b o d i e s by a specif ic extract ion

procedure .

5.2 SPECIAL MATERIALS AND METHODS

5.2.1 EXTRACTION OF PROTEOLIPIDS FROM LIPOPIGMENT

Iso lated l ipopigment bodies were solubi l ised by a modified Folch extraction

(Folch, et al. , 1 957). Lipopigment suspensions at 1 - 1 0 mg/ml were extracted

with 20 vol of chloroform/methanol (2 : 1 , v/v) containi ng 1 00 mM ammonium

acetate, pH 7.2. After addition of 0 .2 vol of deionized water the solution was

gently shaken and left to stand at 4°C, unti l the aqueous and organic phases

Page 58: Biochemical studies on animal models of ceroid-lipofuscinoses

38

separated . The prote ins that precipitated at the i nterface were carefu l ly

withdrawn and retained. The lower organic phase was di luted with 1 vol of

ch lo roform and the vo lume reduced to one fifth by rotary evaporat ion at

35°C. Proteolipids were precipitated from this extract with 1 0 vol of diethyl

ether at -70°C for 1 h and harvested by centri fugation in a Sorval l GLC-1

centrifuge for 1 0 min at 1 ,400 g max at 4°C. This proteol ipid pel let and the

protei ns from the solvent interface were sequential ly washed with methano l

and deion ized wate r and then disso lved in 1 % LDS. At no stage were the

protei ns allowed to become dry.

5.2.2 DIFFUSION ELUTION FROM POLYACRYLAMIDE G ELS

Pancreatic l ipopigment containing 88 J..Lg of protei n was loaded into a 1 6-cm

wide we l l i n the stacki ng gel of a LDS- 1 5% po lyacry lamide ge l . After

e le ctrophoresi s , a s ide strip was cut from the gel and s i lver stai ned as

described in sections 2 .4-2 .5. The bands conta in ing the 3 .5 and 1 4.8 kDa

l ipopigment proteins were cut from the gel , crushed in 1 0 ml of 1 % LDS, and

shaken for 1 8 h at 25°C. The supernatant was freeze dried , redissolved in 1

m l of deionized water and subjected to size exclusion H PLC as described

ear l i e r (section 4 .2 . 1 ) . The e l uted protei n fract ions were col lected and

sequenced as described in section 4.2.2.

5.2.3 ELECTRO B LOTTING OF LIPOPIGMENT PROTEINS

Pancreatic l ipopigment protein contain ing 1 0-20 J..Lg of protei n per lane was

loaded onto LDS- 1 5% po lyacrylamide mini gels ( 1 .5 x 8 x 1 0 mm). 0

E lectrophoresis was carried out at 1 00 Volts for 2 h at 4 C , i n a " Mighty

S m a l l E l e ct ro p h o re s i s u n i t" ( H o efe r S c i e n t i f i c I nstru m e nts) . Afte r

electrophoresis the separated proteins were transfered onto polyvinylidene

d i f l uo ride membranes ( PVDF) accord ing to the method of Matsudai ra ,

( 1 987). The PVDF membranes were rinsed with 1 00% methanol and stored

i n t h e t ransfer bu ffe r . LDS- 1 5% po lyacry lam ide g e l s contai n i ng t h e

separated l ipopigment proteins were briefly soaked in transfer buffer, 1 OmM

[cyclohexylamino]- 1 -propanesulfonic acid (CAPS) , 1 0% methanol, pH 1 1 .0. 0

E lectroelution was performed at 0 .5 A in transfer buffer for 2 h at 4 C. After

e lectroelution the PVDF membranes were washed in deionized water for 2-3

Page 59: Biochemical studies on animal models of ceroid-lipofuscinoses

39

min , stained with 0.2% Coomassie blue R-250 i n 50% methanol contai n i ng

1 0% acetic acid for 2-5 m in , and then destained i n 50% methanol contain i ng

1 0% acetic acid for 5- 1 0 m in at 25°C. Coo m assie b lue stai ned p rote i n

bands of interest were cut into small p ieces and placed i n the cartridge block

of a 470A gas phase sequencer, in the presence of only the Teflon seal , with

neither polybrene no r g lass fibre fi lter d iscs. The sequencing part of the

experiment was performed by I .M. Fearn ley and J. M. Skehel at the M.R .C.

Laboratory of Molecu lar Biology, H i l ls Road, Cambridge, U.K.

5.2.4 CYANOGEN B ROMIDE (CNBr) DIG ESTION OF LIPOPIGMENT

PROTEOLI PI DS

Lipopigment proteol ipids, (0.5- 1 mg} dissolved i n ch loroform/methanol (2/1 ,

v/v} contain ing 1 00 m M ammonium acetate, p H 7.2 , were precipitated with

diethyl ether at -70°C , and then d isso lved in d isti l led 98% formic acid ( 1 .0

ml } , contain ing CNBr ( 1 00 mg} . This solution was gassed with nitrogen and 0

left i n the dark at 25 C for 24 h . Solvents were removed by drying in vacuo

over NaOH pe l lets and the digest stored at -20°C unti l required.

5.2.5 MASS SPECTROSCOPY ANALYSIS OF CNBr DIGESTS

Mass spectra were obtained usi ng a VG70-250S double focussi ng magnetic

sector mass spectrometer (VG Analytical , Manchester, Eng land) fitted with a

VG liquid secondary mass spectrometry ion sou rce and associated caesium

ion g u n . The C N B r d igest of pancreat ic l i pop igment p roteo l ip ids were

dissolved in disti l led 98% formic acid . A 1 0 �I aliquot was suspended i n a

matrix of glycerol and loaded onto the stai n less steel target of the sample

i nsert ion probe . Samples were bombarded with 35 keV caesium ions ( ion

current, 1 -2 �A} . The secondary ion beam was accelerated from the source

at 8 keV and mass analysed at 5000 resolvi ng power (RP} . The magnet

was scanned l i nearly between 890 and 1 250 Da over 1 5 sec. Each analysis

consisted of 4-6 scans of caesium iodide dissolved in water (reference ions,

9 1 2 .3352 and 1 1 72. 1 451 } fol lowed by 4-6 scans of the sample.

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40

5.3 R ESULTS

5.3.1 Characterisation of the proteolipids extracted from l ipopigment

Li pop i g m e nts cou ld be so l ub i l i sed by a mod i f ied Fo lch extracti on i n

c h lo roform/methanol (2 : 1 , v/v) i n the p resence of 1 00 m M ammo n i u m

acetate. The so lub i l ity i n these so lvents was however variable between

extractions. Amino acid analysis of the proteolipid fractions extracted from

th i s so lut ion by ether precip i tat ion showed that almost 70% of the total

protei n present in l ipopigment extracted was proteolipid (table 5 . 1 ) .

Table 5.1 The proport ion of protein recovered as proteol ipid by diethyl ethe r

precipitation of Folch extracted chloroform'methanol/ammonium acetate

solubilised lipopigment bodies, expressed as moles % of the total amino

acids present in lipopigment bodies.

Tissue

Pancreasa

Liverb

Kidneyb

Proteolipid extracted

(% of total protein)

69.4±0.95

69.9±1 .77

68 .7±1 .60

a. Mean of seven estimations ± s.e.m.

b. Mean of four estimations ± s.e.m.

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41

The protei n co m ponent of t h e eth er p rec ip i tated proteo l ip id and non­

extractab le materia l that prec ip itated at the i nte rface d u ri ng the Folch

extractions was examined by LDS-PAGE. The major l ipopigment protein

bands with apparent molecu lar weights of 3.5, 1 4.8 and 24 kDa al l extracted

as proteo l ipids. I n contrast, the nonextracted material that col lected at the

i nte rface du ri ng the Fo lch ext ract ions cons isted of a number of mi nor,

sharply focussed higher molecular weight components. The presence of the

24 kDa lipopigment band and traces of bands at 1 4.8 and 3.5 kDa indicated

that the proteol ipid extraction may not have been quantitative (Fig . 5 . 1 ) .

Fig.5.1

A D C

-24

- 14.8

-3.5

Silver stained LDS-20% PAGE of total pancreatic lipopigment proteins (A) , nonextractable proteins (B), and extracted proteo lipid fraction (C) , The numbers on the right hand side indicate apparent molecular weights calculated from the migration of molecular weight markers.

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42

The amino acid composit ion of the extracted proteol ipid fractions containing

h igh contents of g lyci ne , alan ine , and leucine residues, was consistent with

the proteol ipid fract ion contai n ing a s ign ificant portion of subunit c (Table

5 . 2 ) . I n co ntrast t he non ext racted p rote i n conta ined h ig h co nte nts of

asparti c and g lutam ic acids , with low amou nts of g lyci ne and a lan i ne

residues. The 1 4. 8 and 24 kDa prote i n bands seen on LDS-PAG E were

either agg regates of subunit c o r they were d iffe rent protei ns with simi lar

amino acid compositions.

Table 5.2 The amino acid composition , in moles % of the nonextracted l ipopigment

prote in, Folch extracted chloroform/methanoVammonium acetate soluble

lipopigment (proteolipid fraction) ,compared with that of the full subunit c

of mitochondrial A TP synthase.

Amino acid Nonext racted Ext racted proteolipid F u l l

l ipopigment subunit cc

Pancreas a Kidneyb Liverb Pancre a s a Kidneyb Liverb

Asp 7 . 3 9 . 3 6 . 4 4 . 8 4 . 8 5 . 1 4 . 0

Thr 3 . 1 4 . 1 5 . 0 5 . 2 5 . 1 4 . 7 4 . 0

Ser 5 . 8 5 . 3 6 . 7 6 . 0 6 . 0 5 . 8 6 . 7

Glu 1 1 . 1 9 . 4 7 . 3 5 . 3 5 . 4 4 . 7 4 . 0

P ro 2 . 8 2 . 1 1 . 7 1 . 8 1 . 9 1 . 8 1 . 3

Cys 2 . 0 3 . 2 1 . 3 1 . 2 1 . 8 1 . 8 1 . 3

Gly 5 . 8 7 . 6 1 1 . 0 1 2 . 3 1 3 . 5 1 2 . 7 1 4 . 7

Ala 7 . 8 8 . 3 1 0 . 6 1 4 . 5 1 4 . 6 1 4 . 4 1 7 . 3

Val 8 . 3 7 . 6 8 . 4 8 . 3 7 . 1 7 . 3 5 . 3

Met 2 . 8 1 . 3 1 . 4 2 . 3 2 . 9 3 . 4 4 . 0

I le 7 . 0 7 . 3 7 . 0 8 . 8 8 . 6 8 . 3 9 . 3

Leu 1 1 . 2 1 1 . 7 1 3 . 1 1 1 . 6 12 . 7 1 3 . 2 1 2 . 0

Tyr 2 . 8 2 . 0 6 . 2 3 . 8 2 . 8 3 . 1 2 . 7

Phe 4 . 8 4 . 3 8 . 5 7 . 7 7 . 7 8 . 1 9 . 3

His 3 . 4 4 . 1 0 . 6 0 . 7 0 . 9 0 . 8 0

Lys 7 . 5 5 . 3 3 . 1 3 . 1 2 . 6 3 . 0 2 . 7

Arg 6 . 5 7 . 1 1 . 5 2 . 6 1 . 6 1 . 8 1 . 3

a. Mean of seven estimations

b. Mean of four estimations

c. Values taken from the cDNA sequences of the full ovine protein (Medd and Walker,

unpublished)

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43

5.3.2 Identification of the 14.8 and 24 kDa lipopigment proteins

P u rify ing the 1 4 .8 and 24 kDa prote ins from the mixtu re of l ipopig ment

proteins proved to be ext remely difficult (chapter 4) . When the 3.5 and 1 4.8

kDa Lipopigment prote ins separated on LDS-PAGE were diffusion e luted

f rom a ge l and re-e l ectrophoresed , the 1 4.8 kDa protein mig rated as a

d isti nct component , suggesting that it was a diffe rent prote i n , and not an

aggregate of the major 3.5 kDa protein (Fig. 5 .2) .

Fig.5.2

A B c

- 14 . 8

- 3 .5

Silver stained LDS-1 5% PAG E of pancreatic lipopigment proteins , (A) and the 1 4.8 and 3.5 kDa lipopigment bands that were diffusion e luted from (A) and re-run on another LDS-1 5% polyacrylamide gel (B and C, respectively). The numbers on the right hand side indicate apparent molecular weights calculated from the migration of molecular weight markers.

However, amino acid sequencing of fractions that diffusion eluted from the

1 4.8 and 3.5 kDa l ipopigment protein bands showed the fi rst eight and fou r

am ino-te rmina l res idues o f subu n it c , respect ive ly. I n o rder t o further

i nvestigate this interest ing result, l ipopigment proteol ipids separated by LDS­

PAGE were electroblotted onto PVDF membranes so that d i rect sequencing

of these bands cou ld be i nvestigated. Visual is i ng the blotted bands was

difficu lt as they stained poorly with Coomassie blue (Fig. 5.3).

Page 64: Biochemical studies on animal models of ceroid-lipofuscinoses

- 24

- 14 . 8

-3. 5

44

Fig.5.3

Coomassie b lue stained pancreat ic l ipopigment proteolipids electroblotted onto a PVDF membrane f ro m an L D S- 1 5% po lyacry l a m ide g e l . The numbers on the right hand side indicate apparent molecular weights calculated from the migration of m o l e c u l a r w e i g h t m a rk e r s . N ote t h e po o r Coomass ie b l u e s ta in ing o f t h e l ipopig ment proteolipids.

Sequenci ng of the bands blotted onto PVDF membranes confirmed the

ami no-te rminal sequence res idues 1 -36 of subu nit c from the 3.5 kDa

l ipopigment protein band. The same sequence was also obtained to 6 and

1 3 residues from the 1 4.8 and 24 kDa l ipopigment bands. In itial yields of the

3 . 5 , 1 4 . 8 and 2 4 k D a prote i n s we re 2 1 . 8 , 1 . 7 a n d 2 . 6 p ico m o le s ,

respectively. These results indicated that the 1 4.8 and 2 4 kDa l ipopigment

protei n bands were ol igomers of the 3.5 kDa l ipopigment protein . No other

sequences were detected i n these studies.

5.3.3 CNBr cleavage of l ipopigment proteolipids and analysis of the

digest fragm�mts

I n o rder to obtain seq u e nce i nformat ion beyond the amino-terminal 40

residues of the major sto red l ipopigment prote i n , CNBr d igestion of the

p roteo l ip id ext racted fro m pancreat ic l i pop ig ment was i nvest igated .

Products of the cyanogen bromide digestion were unable to be separated by

reverse phase H PLC. Therefore an al iquot of the total digest was loaded

onto the amino acid sequencer. Three sequences were assignable in the fi rst few cycles. These were the expected ami no-te rminal sequence of

subunit c and the sequences Gly-Leu-Phe- and Vai-Aia, consistent with the

Page 65: Biochemical studies on animal models of ceroid-lipofuscinoses

45

presence of Met60 and Met66 fragments of cyanogen bromide digestion of

the ful l subunit c proteol ipid. Further sequencing of these fragments was not

possib le due to the poor repetitive yields obtained. These small peptides

were considered to be washed off the sequencer by the solvents used.

W h e n t h e total CNBr d igest products were subjected to mass spectral

analysis two major peaks with masses of 976.5708 and 994.5897 Da in the

ra n g e b etwe e n 890 a n d 1 250 Da w e re d etecte d . T h e s e m asses

corresponded to those expected for the homoserine lactone and homoserine

fo rms of the Carboxyl-te rmi nal cyanogen b romide fragment of subun it c,

( r e s i d u e s 67-75 , F ig . 5 . 5 ) , ca lcu lated as 976.5871 a n d 994 .5977 for

Cs1 H7aN9o1 0 and C51 HaoN9o1 1 , respective ly (Fig. 5.4). Homoserine is

fo rmed from Met75 dur i ng the cyanogen brom ide d igest ion . The other

frag ments expected from a CNBr digestion of the fu l l subun it c were not

detected.

Fig.5.4

Csl 912.3352

C51 H7aN901 o C51 HaoN901 1 976.5708 994.5897

Csl 1 172.1451

100 200 300 400 500 600 700 800 900

Linear mass spectral scan over the molecular ion region of the carboxyl­terminal CNBr cleavage fragment of subunit c extracted from pancreatic lipopigment. Csl calibrant signals were used for the mass measurement of the peptide fragments.

Page 66: Biochemical studies on animal models of ceroid-lipofuscinoses

46

The presence of the carboxyl-terminal region of subunit c indicated that the

fu l l protein was stored in l ipopigment but its complete normal structu re cou ld

n ot be assu med u nt i l the complete sequence of the stored protei n was

determined (Fig. 5.5).

1 1 0 A5p-Ile-A5p-Thr-A1a-A1a-Lys-Phe-Ile-Gly-A1a-Gly-A1a-A1a-Thr-Val-Gly-Val-A1a-

2 0 3 0 Gly-Ser-Gly-Ala-Gly-Ile-Gly-Thr-Val-Phe-Gly-Ser-Leu- Ile-Ile-Gly-Tyr-Ala-Arg-

4 0 5 0 Asn-Pro-Se r-Leu-lys -Gln-Gln-Leu -Phe -Ser-Tyr-Ala - I le-Leu-Gly-Phe -Ala-Leu- Ser-

6 0 7 0 Glu-Ala-Me t -Gly-Leu-Phe-Cys-Leu-Met -Val -Ala-Phe -Leu - I le-Leu-Phe-Ala -Met

Fig. 5.5 Amino acid sequence of the major stored l ipopigment protein. Residues identified by Edman degradation are shown in bold, those confirmed by mass spectroscopy of CNBr digestion are underlined.

5.4 DISCUSSION

There is a tendency for subun it c to form aggregates in dodecyl sulphate

(Sebald and Hoppe, 1 981 ) . The variabi lity of the 1 4.8 and 24 kDa bands on

LDS-PAG E between different isolates of l ipopigment and between different

gels of the same isolate suggested that they might be aggregates of subunit

c (Chapte rs 3 and 4) . Ident i fication of the amino-terminal sequence of

s u b u n i t c as t h e o n ly sequence detected f ro m the 3 .5 and 1 4 .8 kDa

l i popigment proteins that diffusion e luted from an LDS-polyacry lamida gel

and fro m the 3.5, 1 4.8 and 24 kDa bands blotted onto PVDF membranes,

showed that these bands were oligomers of subunit c. Iso lated l ipopigment

p rotei n was therefore composed large ly of th is protei n . These f ind i ngs

explained the difficulties encountered in trying to separate and purify these

protei ns by conventional techniques using ion exchange chromatography on

C M-23 Caboxymethyl Ce l lu lose (Graf and Sebald, 1 978) and LH-20 gel

f i l t rat i on ch romatog raphy (Catte l l , et al. , 1 97 1 ) . lt a lso stre ngthens the

rat ionale used for the sequencing strategy described i n Chapter 4, which

was based on the major 3.5 kDa protein (subunit c) being present in h igher

molar quantit ies than any other p rote i n . A lthough a number of d ifferent

proteo l ipids are known to be present i n whole mitochondria (Fearn ley and

Page 67: Biochemical studies on animal models of ceroid-lipofuscinoses

47

W a l k e r , 1 986 ) , n o oth e r m i toch o n d ri a l p rote i n was detected i n the

l ipopigment proteolipid fraction.

In conju nct ion with the p resent work, it has been establ ished from cDNA ·

studies that the normal ovi ne subunit c is identical to that of the bovi ne and

human protei n (Medd and Walker, unpublished). The fu l l bovine and human

subu n it c proteo lipids contai n th ree meth ion ine residues, at Met60 , Met66 ,

and at the carboxyl-terminus Met75. If the ful l subun it c is present i n ovine

l ipopigment then chemical cleavage with cyanogen bromide should give rise

to three fragments. The amino-terminal fragment was not detected as it had

a mass range beyond the capabi l ity of the inst rument used . A f rag ment

corresponding to cyanogen bromide cleavage at Met60 , was also not seen ,

possibly due to supression by other surface active components in the total

digest or by the low surface activity of the frag ment itse lf. The absence of

expected species due to these effects when mixtu res of digest products are

subjected to mass spectral analysis is we l l documented (Barber, et al. , 1 983 ;

B ieman n , 1 982 ; Clenc h , et al. , 1 985) . The carboxy l-te rm i nal cyanogen

bromide f rag ment , wh ich was identified by mass spectroscopy (Fig . 5.4) ,

i nd icated that the fu l l subun it c was present in li popigment. This was also

supported by the ami no acid com posit ion of the ext racted l ipopigment

proteolipid fraction , which was very simi lar to that of the ful l subunit c. The

contribution stored subun it c makes to total pancreatic l ipopigment protein

was therefore revised from a min imum of 40% to 73% (Table 4 . 1 ) . This

estimate is in accord with findi ngs recorded in this chapter, i .e . that 70 % of

the pancreatic l ipopigment extracted as proteolipid. These values are both

l i ke ly to be unde rest imates as the fi rst is based on the i n it ial y ie ld in the

amino-terminal sequencing which is not a quantitative reaction , and the

second on proteolipid extraction which was not complete (Fig . 5. 1 ) .

The complete amino acid sequence of the stored protein was determined by

co l laboration with researchers at the M.R.C. Molecu lar Biology Laboratory ,

Cambridge , U .K. This was achieved after covalently attachi ng the products

of t he react ions of t he l i pop igment p roteo l ip id f ract ion with cyanoge n

b romide and N-bromosucci n i mide to 3-aminopropyl g lass suppo rts. The

covalent coup l i ng to so l id supports was requ i red to prevent the digest

frag ments from bei ng washed off the sequencer i n the so lvents used ( I .M.

Fearnley, pers. comm.) . These sequencing studies showed that previously

unassigned residues 41 to 66 in the stored protei n were identical to those of

the fu l l subunit c (Fig . 5.5) .

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48

Mass spectroscopy studies s howed that the re was no post-trans lat ional

m o d i f icat i ons to the carboxy l -t e rm i n u s ( M et66_Met75) no r was the re

e v i d e n ce to i n d i cate t h e p re s e n ce o f m od i f ied res i d u e s fro m both

sequenc ing and amino acid analyses. Th is however does not preclude the

possibi l ity of the presence of acid labi le modifications that wou ld not have

been detected by the studies described.

The subun it c proteo lipid in the inner mitochondrial membrane is not known

to be post-translationally modified (Sebald and Hoppe, 1 981 ). There was no

evidence for the presence in l ipopigment fragments of subun it c, tru ncated at

e ither amino or carboxyl terminals. lt is concluded that the complete subunit

c ot m itochondrial ATP synthase is stored i n ovine l ipopigment.

The fi nding that the 1 4.8 and 24 kDa bands were oligomers of subunit c was

a lso i mportant as it precluded any other major protei n com ponent being

s pecifical ly stored i n the d isease. As noted i n chapter 4 , this protein has

on ly previously been detected i n mitochondria as part of the F 0 component

of the ol igomeric ATP synthase complex, where it is estimated to account for

2 -4% of the i nner mitochondria l membrane prote i n (Sebald and Hoppe,

1 981 ) . As two th i rds of the l i popigment mass is protei n (Palmer, et al. ,

1 986b) , subunit c alone accounts for at least half the total l ipopigment mass.

I ts p rese nce i n lysosome derived l ipopig ment is therefo re most l i ke ly to

reflect the underlying biochemical lesion in ovine ceroid- l ipofuscinosis.

Page 69: Biochemical studies on animal models of ceroid-lipofuscinoses

C H A P T E R 6

STUDIES ON MITOCHON DRIA ISOLATED FROM CONTROL AND

AFFECTED SHEEP

6.1 INTRODUCTION

49

Lysosome derived ovine l ipopigment bodies can be isolated relatively free of

oth e r co ntam i n at i ng ce l l u la r o rg a n e l les o r debris . The majo r sto red

l i pop ig ment p rote i n was ident i f ied as an i n ner mitochondria l membrane

protei n (subunit c of mitochondrial ATP synthase) in the previous chapters. lt

was necessary to exclude the possibi l ity that the presence of subunit c could

h av e a ri s e n f ro m conta m i n at i o n of l i po p ig ment p re p a rat i o n s with

membranes of m itochondrial o rig i n . The amounts of th is p rotein in i nne r

mitochondrial membrane preparations were also i nvestigated to determine if

accumu lat ion of subun it c was occu ri ng at the level of the mitochondrion.

The funct ional i nteg rity of mitochondria isolated from affected and control

sheep were also compared by determination of thei r acceptor control ratios

(ACR). Th is is defi ned experi mental ly as the ratio of respi ration rate in the

presence of added ADP (state 3) to the rate obtained fol lowing its depletion

(state 4) , (Fig .6.3) . Efficiency of phosphorylation was determined as the ratio

of the amount of ADP added to the amount of oxygen consumed during the

bu rst of state 3 respi ratio n . Th is expe ri mental rat io equates with the

theoretical P/0 ratio i .e . mole equivalents of phosphate esterified per oxygen

consu med . The P/0 rat io g i ve s values approaching 3 with NAD-I i n ked

substrates and 2 with succinate (Tzago loff, 1 982).

6.2 SPECIAL MATERIALS AND METHODS

6.2.1 ISOLATION OF MITOCHONDRIA AND INNER M ITOCHONDRIAL

MEMBRANE VESICLES FROM AFFECTED & CONTROL SHEEP

Mitochondria were prepared from affected and contro l l ive r and kidney

tissues by the method of Nedergaard and Cannon (1 979) . Ovine liver and

kidney tissues ( 1 0-20 g) were cut into small p ieces, suspended in 4 vol of

0 .28 M sucrose , 0 .01 M Tris-HCI , pH 7.4 and homogen ised with a Potter­

E ivehjem homogen iser, fi rst ly by maki ng 1 0 passes us ing a motor driven

pest le with a 0.6 mm clearance, fo l lowed by 1 0 passes with a pestle with a

0 . 3 m m c learance . Ce l l d e b r i s and n u c l e i were re m oved f rom the

homogenates by centrifugation at 600 gmax for 5 min at 4°C in an SS34

roto r on a Sorval l RC-5 centrifuge. The supernatants were retai ned and

Page 70: Biochemical studies on animal models of ceroid-lipofuscinoses

50

pel leted by centrifugation at 5 ,000 gmax for 1 5 mi n at 4°C. This pel let was

dispersed i n a solution of 0.3 M sucrose and repe l leted by centrifugation at

7,500 gmax for 1 0 min at 4°C. Microsomal particles (the "fluffy layer") were

was h ed off and t h e brown p e l let resuspe n ded i n 0 . 3 M sucrose and

sed imented agai n by centrifugat ion at 7,500 g max· Th is p rocedure was

repeated unt i l a u n iform brown pel let was obtained. The final pe l let was

suspended in 0.28 M sucrose , 0 .0 1 M Tris-HCI , pH 7.4. Al iquots from these

preparations were used for the respi ratory measurements described be low.

I n n e r m itochondria l membran e ves ic les we re obta ined by son icati ng

aliqu ots of the m itochondrial fract ions (5-20 mg protein/m !) , for 2 min in a

Soniprep 1 50 sonicator at a 30 micron sett ing , fol lowed by centrifugation at

7,500 gmax for 1 0 min . An aliquot was taken for thin section and negative

stai n i n g e l ect ro n m i c roscop y . T h e rest of t he i n n e r m itochond r ia l

preparations were dissolved in 1 % LDS and stored at-20°C u nt i l required.

6.2.2 N EG ATIVE STAINING ELECTRON MICROSCOPY

I nner m itochondrial membrane vesicles and i solated l ipopigment bodies

were negatively stai ned on 300 mesh formvar coated copper g rids. G rids

were floated on a solution of 1 % (w/v) bovine serum albumin for 1 0 sec at

25°C. Afte r removal of the excess bovine serum albumin by touching the

grid with a piece of Whatman No 1 fi lter paper, they we re transfe rred to

sample suspensions contain ing isolated li popigment and i nner mitochondrial

membranes , (0 .4 mg of prote i n/m ! ) for 60 sec at 25°C . The grids were

removed and washed with deionized water for 30 sec and then i mmersed i n

1% potassium phosphotungstate , pH 7.2 , fo r 1 0 sec. Excessive stain was

removed by touchi ng the grid with a piece of Whatman No 1 fi lter paper and

the g rid air dried at 25°C.

6.2.3 R ESPIRATORY MEASUREMENTS

Resp i rat io n i n t h e m itochond r ia l f racti ons was dete rm i ned at 25°C by

measu ri ng the ADP sti mulated oxygen uptake with a C lark type oxygen

electrode (Yellow Springs Instruments, Yel low Spri ngs, OH, U .S.A.) , by t he

method of Estabrook, (1 967). The react ion mixtu re contained 1 .6 ml of a

buffered salt solution (45 mM potassium phosphate, 60 mM Tris-HCI, 5 mM

MgCI2 , 2 .5 mM potassium EDTA, pH 7.4) and 0 .2 ml of 1 0 mM succinate or

glutamate as respiratory substrata. After the addition of 990 J.ll of deionized

wat e r , t h e react i o n m ixt u re was sat u rate d w i th a i r , a n d 0 . 2 m l of

mitochondrial suspension (25-50 mg of protei n/m!) was added, followed by

Page 71: Biochemical studies on animal models of ceroid-lipofuscinoses

1 0 J.LI of 400 mM ADP a few minutes later to stimulate respiration .

6.3 RESULTS

6.3.1 Electron microscopy and LDS-PAGE of l ipopigment and

mitochondrial preparations

51

I s o l ated m itochondr ia l p re parat i o n s were exam i n ed by t h i n sect i o n

transmission e lectron microscopy using t h e same procedure described for

checking purity of i solated l ipopigment. Their u ltrastructural appearance was

quite dist inct from that of the mu lti lamel lar profi les of isolated l ipopigment

bodies (Fig . 6 . 1 A,B) . N egative stai n ing e lectron microscopy of the inner

m itochondrial membrane vesicles showed the stalked particles of the F 1 componen t of t h e mitocho ndr ia l ATP synthase co m plex o n the outer

surfaces of these inverted membranes (Fig . 6. 1 D) . These were not see.1 on

the surfaces of the negatively stai ned iso lated l ipopigment bodies, which

were re latively smooth in appearance (Fig. 6 . 1 C).

Fig. 6.1 Thin section electron micrographs of pancreatic lipopigment and isolated mitochondrial preparations (A and B,respectively) magnification x 46,000 and negat ively stained pancreatic lipopigment and inner mitochondrial membrane vesicles (C and D,respectively) magnification x72,000.

Page 72: Biochemical studies on animal models of ceroid-lipofuscinoses

52

LDS-PAGE of i nner m itochondrial membrane vesicle iso lates showed a

large number of protein bands. The p resence of subun it c i n the reg ion

where i t is known to migrate on LDS polyacrylamide gels (with an apparent

molecu lar weight of 3 .5 kDa) was on ly barely visible i n preparations from

both control and affected sheep despite the use of the si lver stain developed

to visualise this protein in lipopigments, where it stains as a dominant band

at 3.5 kDa (Fig. 6.2 A) . PAGE of purified bovine ATP synthase showing the

presence of subunit c and other components of the complex is presented for

comparison courtesy of I .M .Fearnley, R .Lutter and J .E.Walker (Fig. 6 .2 B) .

(A)

AB C

Flg.6.2

(B)

-24

- 14.8

-3.5

- a --- p

- "( b =:; oscp

- d ' a (ATPase 6)

- o __. F6 - A6L - £ - c

Silver stained LDS-PAGE of (A) inner mitochondrial membrane vesicle prote ins from co ntro l and aff ected sheep l ivers ( lanes A and B , respectively, 20 J.LQ/Iane) a nd pancreatic l ipopigment prote ins ( lane C , 1 5J.Lg/lane) . (B) PAGE of purif ied bovine ATP synthase courtesy of I .M.Fearnley, R.Lutter and J .E.Walker.

Page 73: Biochemical studies on animal models of ceroid-lipofuscinoses

53

6.3.2 Respiratory measurements on isolated mitochondrial fractions

Respi rat ion rates and acceptor contro l rat ios of iso lated m itochondrial

fractions from affected and control sheep kidney tissue were determined by

measuring oxygen uptake with the Clark type oxygen electrode (Fig. 6.3) .

A

ADP

I 81 .6 nmolo2

state 4 5.5

B

I 75. 8 nmolo2

1 min 1 min

A D P

state 4 6 .3

Fig.6.3 Oxyge n t races obta ined when the respi rato ry activity of isolated mitochondrial preparations from affected (A) and control (B) kidney tissues were assayed by the procedure described in section 6.2.3 . Glutamate ( 1 0 mM) was used as respiratory substrate and stimulation of State 3 respiration was by the addition of 400 mM ADP. The numbers for State 3 and 4 on the traces are oxygen uptakes expressed as nmol min-1 mg protein-1 .

Page 74: Biochemical studies on animal models of ceroid-lipofuscinoses

54

Stimu lation of respirat ion (state 3) was observed i n both affected and normal

m itochondrial preparat ions after the addit ion of ADP. After exhaustion of

ADP the rate of respi ration decreased (state 4). Calcu lated acceptor control

ratios (i . e . the rate of oxygen consumption i n the presence of ADP compared

with the rate after ADP had been converted i nto ATP) of between 2 .3-5.0

were obtai ned from both affected and contro l m itochondrial preparat ions

(Tab le 6 . 1 ) . Contro l and affected kidney mitochondria oxidised 1 0 mM

s ucci n ate at rates of 3 . 2 and 3 .4 Jlmo les of 02 h- 1 mg of prote i n - 1

respectively. These rates were simi lar to those reported i n the literature for

sheep liver mitochondria (Reid and Husbands, 1 985) .

Table 6.1 Respiratory control ratios from control and affected kidney

mitochondrial preparations using succinate and glutamate as substrates

Oxygen upt ake ACR ( state 3 / state 4 )

( nmoles min- 1 mg protein- 1 )

succ inate glutamate s uccinate glutamate

state 3 state 4 state 3 state 4

Cont rol a

1 . 6 0 . 4 1 9 . 8 2 7 . 1 6 . 3 3 . 0 4 . 3

2 . 4 5 . 1 1 9 . 9 3 8 . 2 12 . 2 2 . 3 3 . 1

Affectedb

1 . 5 4 . 8 1 7 . 2 2 7 . 7 5 . 5 3 . 2 5 . 0

2 . 2 6 . 9 1 8 . 5 2 4 . 2 6 . 4 3 . 1 3 . 8

a . Kidney mitochondrial preparations isolated f r om two cont rol sheep

b . Kidney mitochondri a l preparat ions isolated from two a ffected sheep

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55

The measu red ADP/0 rat ios from both affected and control mitochondrial

preparations were close to those theoretically expected for iso lated coupled

sheep mitochondria (Table 6.2) .

Table 6.2 ADP/0 ratios from control and affected kidney mitochondrial

preparations using succinate and glutamate as substrates

Oxygen upt ake when 4 0 0mM ADP was added

AD P / 0

( nmo les )

succinate glutamate succinate

( 2 ) a

Controlb

1 . 1 1 1 . 1 7 5 . 8 1 . 8

2 0 1 4 0 . 4 8 3 . 2 1 . 4

Affectedc

1 . 1 1 7 . 3 8 1 . 6 1 . 7

2 0 1 1 1 . 1 8 0 . 8 1 . 8

a. Expected theoretical ratio

b. Kidney mitochondrial preparations isolated from two control sheep

c. Kidney mitochondrial preparations isolated from two affected sheep

rat ios

glutamate

( 3 ) a

2 0 6

2 . 4

2 . 5

2 . 5

Page 76: Biochemical studies on animal models of ceroid-lipofuscinoses

6.4 DISCUSSION

56

The quantitative data presented i n Chapter 4 and 5 showed that subunit c

was stored i n l ipopigment isolated from sheep with ceroid- l i pofusci nosis.

Evidence that it cou ld not have ar isen from contaminat ion of l ipopigment

preparat ions with i n n e r m itochondri al me m b ranes was obtai ned by a

combination of electron m icroscopy and polyacrylamide gel e lectrophoresis.

Firstly, despite the common use of sonication and centrifugation steps in the

methods of isolation of l ipopigment and mitochondrial preparations, they had

qu ite separate and d isti nctive u ltrastructu ral appearances. I n negatively

stai ned preparations there was no i nd ication of the stalked particles of the

F1 component of the ATP synthase complex on the surfaces of l ipopigment

bodies, whereas these were clearly seen on the i nner mitochondrial vesicles

(Fig. 6 .2 C & D) . Secondly , the protei n composition of i nner m itochondrial

vesicles seen by LDS-PAGE was distinct from that of isolated l ipopigment,

w i t h s u b u n i t c b e i n g bare ly v i s i bi e i n t h e fo rmer . T h e refo re a n y

contami nation of l i popigment bodies by mitochondrial membranes wou ld

tend to diminish the concentration of subunit c i n the lipopigment, rather than

be a source of it. Further support for a lack of m itochondrial contamination

of iso lated l ipopigment bodies comes from the l ipid analysis of Palmer, et al.,

( 1 986a) , which showed that l ipopigment l ipids were those characteristic of

lysosomal membranes with no indication of the presence of the distinctive

mitochondrial phosphol ipid, cardiol ipin .

The quant itat ive d ata p resented in Chapte rs 4 & 5 and observat ions

recorded and discussed above, indicate that subunit c of mitochondrial ATP

synth ase i s specif ica l ly stored i n l i popi g m e nt f rom sheep with ce roid ­

l ipofuscinosis and its presence was not due to mitochondrial contamination

of i s o lates of l i po p i g m e nt s . S i m i lar amou nts of s u b u n it c i n i n ne r

mitochondrial membranes of affected and control preparations (Fig . 6.2 A)

i ndicated that accumu lation of this protein in the disease was not occuri ng i n

the mitochondrion.

Acceptor contro l rat ios of mitochondrial preparations from affected sheep

kidney tissue were comparable to those dete rmi ned from normal sheep

kidney tissue. They were also consistent with those reported in the l iterature

for sheep liver mitochondrial preparations (Reid and Husbands, 1 985) .

Measured respi ration rates and P/0 ratios were close to those theoretical ly

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57

expected using succi nate or glutamate as substrates. This indicated that the

mitochondria l fract ions from affected sheep mai ntai ned a structu ral and

fu nctiona l i nteg rity enab l i ng acceptor contro l comparable to those from

control m itochondria l fractions. The les ion in the disease was therefore

un l ikely to be re lated to a mitochondrial respi ratory chai n o r an oxidative

phosphory lation defect related to the m itochondrial ATP synthase complex.

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58

C H A P T E R 7

CELL CULTURE OF OVINE KIDNEY EPITHELIAL CELLS

7.1 INTRODUCTION

The recognition of subun it c of m itochondrial ATP synthase as the major

sto red component i n iso lated l ipopigment bodies from the ovi ne form of

ceroid-l ipofusci nosis (Chapters 4,5,6) suggests that its storage reflects the

primary lesion in the disease. In order to further study the pathogenesis of

subun it c storage the development of an in vitro ce l l cu lture model of the

disease was i nvestigated using cultu res of kid ney cel ls . The need to obtain

a radiolabel led subun it c as a potential substrata was envisaged and sheep

as an animal were too large for this to be ach ieved in vivo. Kidney tissue

was chosen because it is rich in mitochondria, has relatively small amounts

of con nective tissue and i n lambs affected with ceroid-lipofuscinosis there is

storage of l ipopigment . Although biochemical studies on fibroblast cell l i nes

f rom f i brob lasts d e rived from pat i ents wit h vari o u s forms of ce ro id­

l i pofuscinoses have bee n reported i n the l ite ratu re (Dawso n and Glaser,

1 987; 1 988) , they g ive no i ndication of the presence of u ltrastructural lesions

characteristic of l ipopigment sto rage bodies. This chapter describes the

cu lturi ng of kidney ce l l mono layers from affected and control sheep. The

primary culture was i nvestigated in itial ly as it was considered to most closely

resemble the in vivo situation . However, log istics and number of animals

avai lable dictated that ce l l s passaged several t imes also be used. I n itial

experiments were designed to determine if epithe l ial cel l cultures could be

obtained and maintained at confluence and to i nvestigate the occurrence of

l ipopigment bodies i n cultured cel ls.

Page 79: Biochemical studies on animal models of ceroid-lipofuscinoses

7.2 SPECIAL MATERIALS AND METHODS

7.2.1 COMPOSITION OF G ROWTH AND MAINTENANCE MEDIA

59

The growth medium used i n ce l l cu lture experi ments consisted of Eag les

min imum essential media (MEM) with 1 .5% NaHC03, pH 7.4, suplemented

with 1 0% (w/v) tryptose broth , 1 0% (v/v) foetal bovi ne seru m (FBS) , 2%

MEM vitamin solution and a 1 % (v/v) solution of antibiotics (PSK) contain ing

penici l l i n ( 1 00 units/ml) , streptomycin (1 0 mg/ml) and kanamycin ( 1 0 mg/ml) .

I n some experiments the 1 % PSK solution was omitted.

The maintenance media consisted of MEM suplemented with 2% FBS, 2%

MEM vitamin solution and a 1 % solution of PSK.

7.2.2 PREPARATION OF AFFECTED AND CONTROL KIDNEY

EPITHELIAL CELLS FOR PRIMARY CELL CULTU RE

Kid neys from affected and co ntro l sheep we re removed u nder steri l e

condit ions with in m inutes of euthanasia. The cortical layer was removed,

m i nced fi n e ly with sca lpe l b lades and ri n sed with 1 00 m l of 0 . 0 1 M

phosphate buffered saline , pH 7.4, unti l a clear supernatant was obtained.

The cel l suspension was transferred to a steri le 250 ml con ical flask and 25

m l of 0 . 3% (w/v) t ryps i n ( 1 :250 Di fco Cert i f ied) added and al lowed to

i ncubate at 37°C for 1 0 m in . The supernatant was then discarded and a

fu rther 25 ml of 0.3% (w/v) trypsin added. The i ncubation was continued a

further 30 min , the cel l suspension fi ltered through a fine wire-mesh fi lter and

1 0 ml of 1 0% FBS added to the fi ltrate to neutral ize the effect of the trypsin .

Ce l ls were harvested by centrifugat ion at 200 g max in a Sorvall GLC-1

centrifuge for 1 0 min and resuspended i n 20 ml of g rowth medium. A 200 �I

al iquot of the cel l suspension was m ixed with 1 .8 ml of trypan blue 0 .2%

(w/v) and the transparent live cells counted.

7.2.3 G ROWTH AND MAINTENANCE OF CELL CULTURES

Cel ls were d istributed at 1 x 1 o6 cel ls/m I into 25cm2 plastic cu lture flasks

and in Leighton tubes contain ing g lass cover-sl ips.

Page 80: Biochemical studies on animal models of ceroid-lipofuscinoses

60

T h ey were p laced i n an i ncubator at 37°C and left u ndistu rbed to form

monolayers. At confluence , the monolayer cel ls were washed with PBS and

harvested by treatment with 2 ml of antibiotic-trypsin-versene (ATV) mixture

contai n i ng penic i l l in ( 1 00 u nits/ m l ) , streptomycin ( 1 0 mg/ ml} , trypsi n 5%

(w/v) and ve rse ne (E DTA , tet rasod i u m salt , 2% (w/v) ) for 5 m i n and

resuspended in 1 0 ml of g rowth medium. After counting the cells they were

passaged at 1 x 1 o6 cel ls/ml i nto fresh cu lture flasks and i ncubated at 37°C

to fo rm mono layers as before . Cel ls at confluence i n some flasks were

maintained in maintenance media with changes to fresh media every 48 h

unti l the monolayers started to degenerate and peel off the culture flasks at

senescence.

7.2.4 P R EPARATION OF C E L LS FOR L I G HT A N D THIN SECTION

E LECTRON MICROSCOPY

Monolayer cel ls in 25 cm2 cu lture flasks were washed in PBS and then fixed

i n 2 m l of 3% g lutaraldehyde i n 0 .01 M phosphate buffer at pH 7.2 for 20

min . Fixed ce l ls were gently scraped from the flask with a th in metal spatula,

co l lected by cent rifugatio n a n d p rocessed fo r e lect ro n m icroscopy as

described in sect ion 2 .3 . On reach ing confluence, cel ls in Leighton tubes

were washed with PBS and stained by haematoxyli n and eosin (H&E), and

by luxol fast blue.

7.2.5 RADIOLABELLING OF CULTURED CELLS

Confluent monolayers in 25cm2 flasks, were washed with PBS and placed i n

PBS for 4 h at 37°C. They were then i ncubated with 1 0 �I of a 3H-amino

acid m i xtu re ( 1 . 0 mCi/m l ) i n P B S co ntai n i n g 2% F B S , and 1 % P S K

antib iotics. After 30, 60 , 1 20 and 360 min i ncubation , the label led amino

acids were removed and cel ls washed with PBS. Some flasks were treated

with 2 m l of ATV, for 2-5 min , resuspended i n 1 0 vol of PBS and harvested

by centrifugation at 200 gmax· Others were placed i n 5 m l of maintenance

media and incubated for a further 24 h prior to ATV treatment and harvesting

as above. The cel l pellets were resuspended in 1 ml of deionized water. A

1 00 �I al iquot was used for protei n determination by the method of Lowry, et

al. , ( 1 951 ) .

Page 81: Biochemical studies on animal models of ceroid-lipofuscinoses

61

The radioactivity i n the cell p rotei n was measured by t reating a 1 0 !ll al iquot

of t h e ce l l pe l let with 1 ml of 1 0% t rich lo roacetic acid (w/v) and 0 .5 m l of

b o v i n e s e r u m a l b u m i n ( 1 mg/m l ) at 4 ° C . A ft e r cen t ri f ugat i o n , t h e

supernatant was d iscarded and the precip itate dissolved i n 500 !ll of 0 . 6 N

N C S t issue so lub i l i ser and added to 2 .5 m l of scinti l lant solvent (Triton X-1 0 0/to l uene 1 : 2 (v/v) contai n i ng 0 . 4 % 2 ,5-d i phenyloxazo le ( P PO) and

0 .0 1 % 1 ,4-bis[2- (5-phenyloxazoly l )]benzene (POPOP)) . The radioactivity

was measured by l iqu id sci nt i l lation cou nt ing o n a Beckman LS 7500 or a

B eckman LS 8000 S e ries Liqu id Sci n t i l l at i o n Spectro m et e r. Cou nt i ng

eff ic iencies o f t he o rder o f 25% for 3H were determined by the H-number

method and the radioactivity expressed as disintegrations per minute (dpm) .

I nco rporat ion o f 3 H i nto ce l l u la r p rote i n s was dete rm i ned by t he dpm

recovered in the TCA precipitable fractions compared to total dpm present .

The re mai nde r of the harvested ce l l p e l let was d isso lved i n 1 0 vo l of

ch lo roform/methanol (2 : 1 , v/v) contain i ng 1 00 mM ammon ium acetate and

divided i nto two equal aliquots . After the addition of 0 .2 vol of l ipopigment

d isso lved in the same solvent to one al iquot , the p roteol ip id fractions were

e xtracted by the p rocedure described i n section 6.2. 1 , dissolved i n 1 % LDS

and stored at -20°C u nt i l requ i red. The amount of radioactivity i n the cel l

p roteolipid fract ions was measured as above. The radioactivity amongst the

p roteo lipid protei ns separated by LDS-PAGE was determined by cutt ing the

g e l i nto stri ps , i ncubat ing them in a 5 ml so lut ion of 99 parts of a 33%

hyd rogen peroxide solution contai n ing 1 part ammonia at 60°C fo r 24 h .

After leaving t h e solutions to cool t o room temperatu re , 0 . 5 m l aliquots were

added to scinti l lat ion solvent, left i n the dark for a further 24 h and cou nted

as above.

Page 82: Biochemical studies on animal models of ceroid-lipofuscinoses

62

7.3 R ESULTS

7.3.1 Morphology and growth characteristics of cultured kidney cel ls

Pri mary ce l l c u lt u re mono layers we re o btai ned fro m both contro l and

affected kidney epithel ial ce l ls under the described growth conditions. They

reached conf luence between 24-48 h and were able to be maintai ned at

conf luence for u p to 6 days, before reach i ng a senescent stage , when the

mono layers started to peel off the cu lt u re flasks. Cu ltured epithe lial cells

retai n ed the i r characte ristic close ly packed po lygonal morphology up to

about the 5th passage when spi nd le shaped fibroblast- l i ke cel ls became

more abundant. The primary ce l l morpho logy was retained in early passage

ce l ls (Fig. 7. 1 ) .

Fig.7.1 Thin section e lectron micrographs of affected k idney epithelial cell in primary culture (A) , and in th i rd passage culture (B) , magnif ication x 31 ,800.

Page 83: Biochemical studies on animal models of ceroid-lipofuscinoses

63

Simi lar g rowth rates were shown by both contro l and affected pri mary ce l l

cultures (Fig . 7 .2) .

A 2 . 0

1 . 5 <D b " e 1 .

!! Gi u

. 5

Fig. 7.2

1 0 1 s 2 0 2 5 3 0

Tlme (h)

B

1 . 5

<D b >< , � . Gi u

. 5

1 0 1 5 20 25 3 0

Tlme (h)

The growth of affected (A) and control (B) k idney epithel ial primary cu ltu res that were dist ributed at 1 x 1 o6 cells/m!. Points on the graphs represent cel ls harvested from sma l l ( 25 cm2) culture f l asks , and counted by the procedure described in section 7.2.2.

Affected a n d contro l cu ltured ce l ls a lso h ad s imi lar appearances when

stai ned with H & E and luxol fast blue stai ns (Fig . 7.�). The latter stain fai led

to show the presence of l ipopigment bodies i n affected cultured ce l ls.

Fig. 7.3

A B

• •

Light microscopic appearance of affected (A) and control (B) primary cu ltu red cells stained with H&E and luxol fast blue. Magnification x 25.

Page 84: Biochemical studies on animal models of ceroid-lipofuscinoses

64

M e m b ra n e bo u nd cyto p las m i c b o d i es conta i n i ng m u lt i l ame l la r and

pentalami na r st ructures were somet imes observed in th in section electron

microg raphs of affected primary ce l l cu ltu res and in early passaged ce l ls

reaching confluence (Fig. 7.14 A,B). These structures were observed i n the

presence or absence of antibiotics in the growth media and were not seen i n

control ce l ls under either circumstance. They were present in approximate ly

1 ce l l out of 1 00 examined and appeared s imi lar to t hose of l ipopig ment

storage bodies seen in situ i n affected tissue. Heterogeneous collections of

autophag ic structures in contro l (Fig . 7. 4 C,D) and affected cel ls were also

observed more frequently.

Fig. 7.4 Thin sect ion e lectron micrographs of membran e bound cytoplasmic bodies fro m affected cultured cells (A & B) , magnification x 72,000 and autophagic structures from control cells (C & D), magnification x 1 5 ,300 & 31 ,800 respectively.

Page 85: Biochemical studies on animal models of ceroid-lipofuscinoses

65

Del i neat ion of st ructu res resembl ing those of l ipopigment bodies from ce l l

cu ltures that were mai ntai ned at confluence to senescent stages was difficu lt

due to the presence of these autophagic st ructures and residual bod ies

associated with senescence.

7.3.2 Measuring the synthesis of subunit c in cultured kidney cells

The presence of structu res that were i nte rpreted to resemble l ipopigment

bod ies i n some affected ce l ls suggested the possib i l i ty of be ing able to

i nvest i g ate the metabo l i s m of subu n i t c f rom affected cu ltu red ce l l s .

Synthesis of subu n it c i n affected and contro l cel ls was i nvestigated by

exposing confluent cel l mono layers to a 3H amino acid mixture . Added label

was i ncorporated i nto TCA precipitable cellu lar protein to a maximal value of

30% afte r a 2 h i ncubat i o n . Rates of i nco rpo rat ion were s im i lar i n both

affected and control monolayer cells (Fig . 7.5).

Fig.7.5

A 30

i 25 ii � 20

8 .5 15

:z � 10

.,_

B 30

a: 25

ii � 20

� 15

) � 10

.,_

Tlme (h)

Tlme (h)

% of 3H incorporated into TCA precipitable protein f rom labelled affected (A) and control (B) primary kidney cell cultures. Each point on the graphs represents determinations from monolayer cells harvested from 25 cm2

tissue cu ltu re f lasks. The rad iolabel l ing procedure and detection of added label is described in section 7.2.5.

Page 86: Biochemical studies on animal models of ceroid-lipofuscinoses

66

I ncorporation of 3H i nto proteolipids of affected and control cel ls label led for

3 h and "co ld chased" i n maintenance media for 24 h prior to harvest ing was

dete rm i n ed next . The re was no s ign if icant d i ffe rences i n t he specif ic

activities (dpm I mg of prote in) of proteolipids extracted from affected and

control cel ls (Table 7. 1 ) .

Table 7.1 The specific act ivities (dpm/mg of protein) of the proteolipid fractions

extracted from five affected and f ive contro l ce l l cu lt u res . Prote in

recovered by chloroform/methanol/ammonium acetate extraction was of

the order of 2.5 f.lg/mg of cel l protein harvested from each 25 cm2 culture

flask.

1 .

2 .

3 .

4 .

5 .

A f f ec t ed cell

c u l t u re

p r ot e o l ipid frac t i o n s

2 . 0 x 1 0 5

1 . 8 x l 0 5

2 . 2 x 1 0 5

2 . 5 x l 0 5

2 . 1x 1 0 5

Cont rol c e l l

c u l t u re

prot e o l ipid f r a c t i o n s

2 . 4 xl 0 5

2 . 0 x 1 0 5

1 . 3xl 0 5

2 . 4 xl 0 5

1 . 7 x l 0 5

Page 87: Biochemical studies on animal models of ceroid-lipofuscinoses

67

Separat ion of the proteo l ip id fract io ns by L D S- PAG E showed that the

radioactivity was distributed amongst the higher mo lecu lar weight bands with

no activity i n the region that subunit c is known to migrate , in both affected

and contro l p reparat ions (F ig . 7 .6 A & C ) . The addit io n of 0 . 2 vo l of

l i pop igment i n ch lo rofo rm/methano l /a m m on i u m acetate pr i o r to e the r

p reci p itat io n o f the p roteo l i p id f ract ion m ade no d i ffe re nce to the 3H distribution (Fig . 7.6 8 & D).

1 0

2 7

2 4

2 1 <:' 0 1 8 � )( 1 5 E

• 2 a. '0

0 9

' 6

3

"l 0

"! 0 � )( ::::, E a. u

Fig.7.6

A

Slice number

c

6

Slice number

<:' 0 � )( E a.

'0

"! 0 )( E a.

'0

B 3 0

2 7

2 4 2 1

1 8 1 5

1 2

0 9

0 6

0 3

0 0

2 3

Slice number

D 3 .. 2 -

2 4 2 1 I 8 ' �. 1 ?

0 g

Sl ice number

3H distribution amongst the proteolipid fractions separated by LDS-1 5% PAGE isolated from affected and control primary cell cultures (A and C, respectively). The distribution of label after the addition of a carrier prior to proteol ipid extract ions f rom affected and control cel ls (B and D , respectively) . The radiolabel l ing procedure used i s described i n section 7.2.5.

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68

7.4 DISCUSSION

U ltrastruct u ra l feature s that we re i nte rp reted to resemble l ipopi g m e nt bodies

in t i ss u e secti o n s we re seen in so m e affected p ri mary cu ltu re d ce l ls and

e a rly passag e d c e l l s at co nfl u e n c e . T h e y were n ot s e e n i n co nt ro l ce l l

cu ltu res. The prese nce of these struct ures i n t h e presence o r absence of

a n t i b i o t i c s i n t h e m ed i a i n d i cate d t h at t hey we re u n l i ke ly to be lame l lar

bodies that can somet imes be i n duced in cu ltu red cel ls by amphi p h i l ic drugs

(Joshi , et al. , 1 989) . The smal l amounts p resent however, i n d icated that th is

les ion was m i n i mal ly expre ssed i n t issue cu ltu re s . Rap i d ce l l pro l i ferat ion

over c o m parat ively s h o rt t ime pe riods wou ld a lso have m i l itated agai n st

l eve ls o f sto rage t h at w o u l d n o rm a l ly h ave occu rred over a l o ng e r t i m e

pe ri od in vivo , ( i . e . rapid ce l l p ro l i fe rati on wo u ld resu lt i n d i v i s i o n o f t h e

stored m ateri a l qu icker than its storage) . The smal l n u mbers of l i popig m e nt

structure s m ay also explai n the fai l u re of the luxol fast blue to d etect these i n

affected cu ltu red cel ls .

P ri m a ry and p assag e d ce l l s reac h i ng co n f l u e n c e we re c h o s e n for t h e

label l ing exper iment a s they were considered t o most closely rese mble cel ls

u nder steady state conditions. Vari at ions in cel l n u m bers fro m e ach flask of

m o n o l aye r c e l l s c o u l d a lso be m i n i m i zed by t h e use o f c e l l s re ac h i n g

c o n f l u e n c e . Tot a l ce l l u la r p rote o l i p i d f ract i o n s we re e xt ract e d o n t h e

assumpt ion t h at if there was abnormal synthesis o f t h e proteol ipi d subun it c

i n affected c e l l s , t h e n it s h o u l d h ave be e n re f lected by a n i nc rease i n

i ncorporat ion of the added label i nto th is fract ion compared to that i n control

fract ions. Although n o d i fferences were detected u nder the condit ions of the

expe ri m e n t , no conc lus ions can be d rawn fro m t h i s res u lt as subsequent

separat i o n of the extracted proteol ip id fract ions by LDS-PAG E fai led to show

t h e presence of label led subu nit c, ( i . e there was no evidence that label led

subun it c was synth esized duri ng t h e label l ing peri od). The smal l amou nts of

p rotei n h a rvested f ro m each flask of conf luent monolaye r cel ls suggested

t h e p o s s i b i l i ty t h at f a i l u re to d et e ct su b u n it c may h ave b e e n d u e to

i nco m pl ete ether p recip itat i o n of the p roteo l i p i d . However, this poss ib i l ity

was e l i m i n ated as add i t ion of s u ffi c i e n t carrie r i n the form of l i po pi g m e nt

d i s s o l ve d i n c h l o roform/met h a n o l/a m mo n i u m acetate t o e n s u re et h e r

p re c i p it at i o n of p ro t e o l i p i d s , m ad e n o d i ffe re n ce t o t h e rad i o act i v e

distr ibution of proteo l i pi d prote ins separated b y LDS-PAGE (Fig . 7.6) .

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69

The p resence of cytoplasmic st ructu res that were i nterpreted to resemble

l i pop ig m ent bodi es seen i n t issue sect i ons i n cu ltu red ep i the l ia l ce l ls ,

i ndicated that the kidney tissue cu lture system has potential t o b e developed

fu rther as an in vitro model of ovine ceroid- l ipofuscinosis.

Longer exposu re of conf luent ce l l mono layers to the amino acid deficient

med iu m and l o n g e r i ncubat ion with t h e added label i n the p resence of

agents such as i nsu l in and epidermal g rowth factor that selectively stimu late

p ro te i n sy n t h e s i s ( B a l l ard , 1 9 82} m i g ht i mp rove t h e l eve l s o f l abe l

i ncorporated i nto ce l lu lar p rote ins (F ig . 7.5) . Subcel lu la r f ract ion at ion to

i so l at e s u b u n it c i n i ts no rma l ce l l u l a r l ocat i o n ( i n n e r m i t oc h o n d ri a l

m e m brane) cou ld also b e i nvest igated to study t h e turnove r rates o f this

p rotei n . The u se of a l abe l with h i g h e r specif ic act i vi ty such as 35s methionine may also help with better detection .

Ext ract ion of subunit c from m itochondrial f ract ions isolated from kidney

ce l ls cu ltured i n the presence of radiolabel led amino acids could provide a

means of obtain ing a potential l abelled subst rata for further experimentation .

A major p rob lem e ncou ntered du ri ng t h is study was the re lative ly smal l

n u m be r of k idn ey epi the l ia l cel ls t h at were i n i t ial ly able to be cu ltured.

A lthough success ive passag i n g p rovided a way to ove rcom e th is , ce l ls

passaged a n um b e r of t imes wi l l u lt i m ate ly resu lt in the p ro l ife rati on of

fib ro blasts ce l ls i n which d isease specif ic lesions are not known to occur

(Graydon and Jol ly, pers. comm. ) . The deve lopment of a stable defined cel l

l i ne that shows d isease specific lesions is h igh ly desirable . A possibi l ity that

cou ld be considered wou ld be to i mmortalize the primary culture by nonvi ral

or viral mediated t ransformation simi lar to that achived with human epithel ial

cel ls (Stam pfe r and Bartley, 1 985; Chang , 1 986).

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C H A P T E R 8

ISOLATION AND CHARACTERISATION OF LIPOPIGMENT FROM A

CASE OF BOVINE CEROID-LIPOFUSCINOSIS.

8.1 I NTRODUCTION

70

Cero id- l i pofusci noses , analogous to that descr ibed i n South Hamps h i re

sheep and humans , have been described i n a n u mber of an i ma l species

(Chapter 1 ) . Th is chapter desc ribes the i so latio n and p rotei n analysis of

l i pop igment from frozen tissue of an affected 1 8 month old he ifer from a

Devon herd i n New South Wales, Australi a i n wh ich ten other cases of the

d isease had occured over a 1 0 year period. The d isease was characteri sed

by seve re ret i n a l d e g e n e rat i o n and t h e i nt race l l u lar accu mu lat i o n of

l i po pi gment characteri st ic of the ceroid- l i pofusc inoses i n a wide variety of

cel l types throughout the body (Harper, et al. , 1 988) .

8.2 SPECIAL MATERIALS AND M ETHODS

8.2.1 BOVINE TISSU E

Frozen brain , pancreas, l iver and kidneys were obtained from an 1 8 month

o ld Devon heifer euthanased in the term i nal stages of ceroid-l ipofuscinos is .

T h ey were stored at -20°C u nt i l u s e d . D i ag nos i s was conf i rmed by

h i stopathological examinat ion of t issues (P .A.W. Harper, pers . com m . ) .

8.2.2 ISOLATION OF BOVINE LIPOPIGMENT BODIES

Lipopigment e n riched pel lets were obtained from frozen Devon pancreas,

l iver, brain and kidney tissues by the same com binat ion of homogeni sat ion ,

osmot ic shock, son ication , and d ifferent ial centr ifugat ion steps used for the

ovine preparat ions (sect ion 2.2) .

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71

L i pop ig m e nts suspe n d e d i n d e i o n i zed wat e r w e re pu r i f i ed fu rthe r by

i sopycn ic centrifugation o n 1 5+ 1 5 m l l i near 0 .64-3.38 M caesium ch loride

(CsCI) density g radients at 1 41 ,000 gmax• 24 h at 4°C in a Beckman SW 28

swing out rotor on a Beckman LB-70 U ltracentrifuge. The l ipopigment bands

were identified by the i r f luorescence when i rradiated with 366 nm u ltraviolet

l i g ht . T h e f l u o resce nce was p h otographed t h ro u g h a y e l low f i lte r o n

E ktachrome 64 ASA fi lm . The l ipopigment bands were removed from the

g radients and their densit ies determined by measuri ng the refractive i ndex of

the CsCI solutions (Weast , et al. , 1 988). They were then washed twice with

deion ized water by resuspension and centrifugat ion at 48,000 g max for 1 0

m in . An aliquot was taken for th in section e lectron m icroscopy as described

i n sect ion 2 .3 . The rema in i ng pe l let was resuspended i n deionized water

and stored at -20 oc u nti l requ i red.

8.2.3 CYANOG EN B ROMIDE DIGESTION OF ISOLATED L IPOPIGMENT

Total pancreat ic l i pop ig m e nt d i ssolved in d i st i l led 98% formic acid was

t reated with cyanoge n bromide as described i n sect ion 5.2 .2 .

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72

8.3 RESULTS

8.3.1 Characteristics of bovine l ipopigments

I n contrast to the iso latio n of l ipopigment from fresh ovine tissues, a CsCI

i sopyc n ic c e n t r i f u g at i o n s tep was req u i re d to ach i eve comparab le

purification from the frozen bovi ne tissues. Th in sect ion electron microscopy

of i so lated l i popig m e nts s howed that t hey we re re l at ive ly free of other

subcel lu lar organel les or debris , and similar in structure to those seen in situ

(Fig . 8 . 1 ) .

Fig. 8.1 Thin section electron micrographs of lipopigment iso lated from bovine pancreas (A) , liver (B) . kidney (C) and brain (0). Magnification x 21 ,000.

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73

Lipopigment bod ies were iso lated from f rozen pancreas, l iver, kidney and

bra in t issues in y ie lds of 0 .6 - 1 . 8 mg of d ry weight /g wet weight of tissue.

The i r p rotei n contents, determ ined by quantitative ami n o acid anaylsis of

hydrolysed l ipopigment , accou nted for 55-62% of the total l ipopigment d ry

masses (Table 8 . 1 ) .

Table 8.1

T i s su e

P a nc r e a s

Liver

Kidn ey

B r a i n

Characteristics of lipopigment isolated from bovine tissues .

D e n s ityb

1 . 8 1 . 1 7 - 1 . 1 9

1 . 7 1 . 2 - 1 . 2 4

0 . 8 1 . 2 - 1 . 2 4

0 . 6 1 . 1 5

P rot e i nc

( % of t he dry ma s s o f t o t a l

l ipopigment bo d ie s )

5 9

6 0

6 2

5 5

a . m g dry weight of isolated lipopigment/g wet weight of tissue.

b . determined by isopycnic centrifugation on CsCI gradients (0.64-3.38M}.

c. determined from the amino acid content after hydrolysis. Mean of t hree

estimations.

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74

The iso lated l ipopigment exh ib ited a ye l low f luorescence when i rradiated

wi th 366 n m u lt ravio let l ight ( Fi g . 8 . 2 ) . l sopycn ic dens i t ies of i so lated

l i pop ig m e nt bodies ranged fro m 1 . 1 5- 1 . 2 4 , dependi ng on the i r t issue of

orig i n (Table 8. 1 ).

Fig. 8.2

(A) (B) (C)

Isolated bovine lipopigments on CsCI isopycnic gradients when irradiated with 366 nm ultraviolet light from; kidney (A) , pancreas (B) and live r (C).

8.3.2 A; • • ino ac:'i composition and LDS-PAGE of bovine

l lpopig!Jlent proteins

The ami no acid compositions of l i popig ments from brai n , pancreas, kidney

and l iver showed a h igh content of a lan i ne , g lyci ne, and leucine residues

(Table 8.2) .

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Table 8.2 The amino acid composition, i n moles % of bovine lipopigments

compared with the ful l subun it c of mitochondrial ATP synthase.

T o t a l l ipopigment Ext r a c ted s ubu n i t

p r o t e o l ipid

Amino Brain P a n c r e a s Kidney Liverb

P a n c re a sc

a c id

Asp 5 . 3 5 . 0 8 . 5 5 . 2 4 . 3 4 . 0

Thr 5 . 6 6 . 4 5 . 4 5 . 0 4 . 6 4 . 0

S e r 6 . 1 5 . 6 6 . 0 6 . 9 6 . 4 6 . 7

Glu 5 . 2 3 . 2 8 . 0 5 . 0 5 . 2 4 . 0

P ro 2 . 3 2 . 4 5 . 0 2 . 9 3 . 8 1 . 3

Cys NDd ND ND ND ND 1 . 3

Gly 1 2 . 2 1 0 . 9 9 . 1 1 1 . 6 1 2 . 3 1 4 . 7

Ala 1 2 . 5 1 3 . 3 8 . 7 1 1 . 7 1 5 . 0 1 7 . 3

Va l 8 . 2 8 . 9 8 . 2 9 . 3 6 . 2 5 . 3

Met 3 . 3 2 . 6 2 . 0 3 . 0 2 . 8 4 . 0

I le 8 . 8 9 . 4 6 . 4 8 . 0 8 . 2 9 . 3

Leu 1 2 . 3 1 1 . 4 1 1 . 4 1 1 . 0 1 1 . 8 1 2 . 0

Tyr 3 . 1 4 . 8 3 . 1 2 . 9 3 . 5 2 . 7

Phe 7 . 4 7 . 3 6 . 0 7 . 8 8 . 5 9 . 3

H i s 2 . 0 1 . 7 2 . 4 1 . 5 0 . 9 0

Lys 3 . 4 3 . 7 5 . 3 3 . 6 3 . 0 2 . 7

Arg 2 . 3 3 . 4 4 . 5 4 . 6 3 . 5 1 . 3

a. Values calculated from the cDNA sequence of the ful l bovine protein

(Gay and Walker 1 985) .

b. Mean of three estimations.

c. 66% of total lipopigment protein extracted as proteolipids, mean of two estimations .

d . Not determined.

75

ea

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76

LDS-PAGE of the l ipopigment protein showed the presence of a major band ,

that comigrated with the 3 .5 kDa band i n ovine pancreatic l ipopigment, and

anot h e r band t h at co m i g rated wi th t h e 1 4 . 8 kDa ov i n e l i pop ig m e nt

component (Fig. 8.3).

Fig.8.3

A B C D

- 14.8

-3.5

Si lve r sta ined LDS- 1 5% PAG E of l ipopigment iso lated f rom ovine pancreas (A) and bovine ·wr� kidney aoo aJ;le«leas� (B , C and D, respectively), (1 5 J.Lg/lane) . The numbers on the right hand side indicate apparent molecular weights calculated from the migration of molecular weight markers.

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77

8.3.3 Amino acid sequencing of bovine l ipopigment

P rotei n seque nci ng was carried out as described i n sect ion 4.2.2, except

t h at total l ipopigment rathe r than l ipopigm e nt p rote in was loaded onto the

s e q u e nce r . A d o m i n a n t s e q u e n c e w a s o bta i n e d f ro m p a n c re at i c

l i popigment , which was determi ned t o 25 residues with a repetitive yield of

90% ( Fig. 8.4). This sequence was identical with the fi rst 25 amino-terminal

res idues of subun it c of m itochondr ia l ATP synthase. The same amino­

t e rm i n a l seq u e n ce was o bt a i ned f ro m b ot h l i v e r a n d b ra i n d e r ived

l i popigment and confi rmed to 1 5 and 20 residues respectively.

Fig.8.4

(/) Q) 0 E 0 u

·a.

0 · ···-----t--·----f---- --+--5 1 0 1 5 cycle number

' ' '

---+-------20 25

The PTH amino acid yields of the first 25 residues of subunit c obtained when bov ine pancreatic l ipopigment contain ing 6 1 .4x1 o-9 moles of hydrolysable amino acids were seque nced. The molar quantity of the peptide that coupled, 0 .56x 1 0-9 moles , was read from the intercept of the repetitive yield slope with the y-axis. The estimate of the contribution of subunit c to the total l ipopigment protein was made by multiplying the

in itial yield 0 .56x 1 o-9

by 75 (the length of t he stored prote in)= 41 .7x1 o-9

divided by the total protein loaded.

i .e 41 .7x 1 o-9 x 1 00 = 68%

6 1 .4x 1 o-9

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78

8.3.4 Mass spectral analysis of the CNBr digest of bovine l ipopigment

Whe n t h e p roducts of cyanogen bro m ide dig esti on of tota l pancreat ic

l i pop igment were analysed by l iqu id secondary i on mass spectrometry, a

m ajo r peak with a m ass of 994 .5984 and a peak at 9 76.5573 Da were

obse rved . These masses were cons i ste nt with those expected for the

h o m o se r i n e and h o m o s e ri n e l acto ne fo rms of t h e carboxyl-te rm i nal

f rag m e nt of subu n i t c a ri s i n g f rom c leavage at M et66 (calcu lated as

994.5977 and 976.5871 Da respectively) (Fig . 8.5). This result i ndicated that

the fu l l subunit c was l ikely to be present i n the isolated bovi ne l ipopigment.

H.�• se

se

70

se � .. � 58 .5

40

30

20

10

e

Fig.8.5

Csl 91 2.3352

994.5984

950 1 000 1050 1 100 1 1 50 IIIASS CESD

1200

Linear mass spectral scan over the molecular ion region of the carboxyl­terminal CNBr cleavage frag ment of subu nit c isolated f rom bovine pancreatic l ipopigment. Csl ca l ibrant signals were u sed for the mass measurement of the peptide f ragment.

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79

8.4 DISCUSSION

Bovi ne l ipopigment exhib ited the same p rope rties of res istance to osmotic

shock and son ication as the l ipopigment isolated from sheep affected with

ce ro id- l i pofusc i nos i s . I so lated l i po p i g ments from va ri o u s t i ssues had

densities sim i lar to those determined for ovine l ipopigments ( Pa lmer, et al. ,

1 986b) . They had h igh protei n contents (55-62%) and contai ned the same

low molecu lar weight p rotein bands with apparent molecular weights of 3 .5

and 1 4. 8 kDa found i n ovine l ipopigment .

The sequenci ng approach described i n Chapter 4 was used, except that the

s ize exc lus ion HPLC step was o mi tted and total l i popigm e nt rathe r than

l i popigment p rote i n was loaded onto the sequencer. The presence of the

f i rst 25 a m i n o -te r m i n a l resi d u e s and t he expected carboxy l - term i na l

cyanogen bromide d igest fragment of the fu l l subunit c i ndicated that the fu l l

p rotei n was l ikely to be present i n bovine l ipopigment . Although residues 26-

66 were not confi rmed by direct sequencing, the amino acid compositions of

t he ext racted p roteo l ip id (Tab le 8 . 2 ) a re cons i stent w i th t he complete

molecule being stored i n l ipopigment . Additional evidence that the complete

molecule i s stored was provided by the LDS-PAGE comigratio n and sim i lar

stai n i n g p ro p e rt ies to subun it c sto red in the ovi n e d i se as e ( Fig . 8 . 3 ) .

Quant i t at i o n of t h e sequence d ata s h owed t h at t h e fu l l s u b u n it c of

m itochondria l ATP synthase accounted for at least 68% of the l ipopigment

p rote i n ( Fi g . 8 .4) . This agrees with the 66% of the l ipopi g m e nt that was

shown to ext ract as proteol ipid. Both these are min imum est im ates as the

i nitial reactions in the sequencer are not quantitative nor were the proteolipid

e xt ract i o n s e xh aust ive . S i m i l a r ca lcu lat i o n s s howed t h at s u bu n it c

accounted fo r 38% of the brain and 22% of l ive r l i pop igm e nt p rote i n . As

p rotei ns accou nt for 59% of total pancreat ic l ipopigment , subun it c alone

accounts therefore, for at least 40% of the total l i popigment mass. Thi s is

s im i lar to t hat found in the ovin e d isease , where subun it c was shown to

account for at least 50% of the total l i popigment mass (Chapte r 5) . These

resu lts i ndicate that both the ovine and bovine ceroid-l ipofuscinoses lead to

t he accum u lat ion of subun it c i n lysosome der ived l i pop igment bodies .

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8 0

C H A P T E R 9

CANINE CEROID-LIPOFUSCINOSIS

9.1 INTRODUCTION

Ceroid- l ipofuscinosis is described in a number of canine breeds (Chapter 1 ) .

Many such descri pt ions are however , case reports and requ i re furthe r study

to defi ne them m o re precise ly. The Eng l i sh Setter has been extens ive ly

studied , and with the exception of retinal degeneration , has been shown to

res e m b l e t h e j uv e n i l e h u ma n d i s e a s e ( Ko p p a ng , 1 9 73/7 4 ; 1 98 8 ) .

L ipopigment bod ies iso lated from the E ng l i sh Sette r have been shown to

contain subun it c (D. N. Palmer, u npubl ished).

In th is chapter l i popigment bodies i so lated from frozen b rai n from a 2 year

o ld Border Col l ie and a 9 year old Tibetan Terrier, two breeds having dist inct

forms of the disease, were analyzed for t he sto rage of subun it c. I n the

former breed , c l in ical signs of neurological d isease developed before 2 years

of age and prog ressed rapid ly with the storage of l ipopigment bodies and

b ra i n at rophy s i m i lar to t hat descr ibed i n the E ng lish Setters and other

can i n e b reeds (Tay lo r and Farrow , 1 988) . The d isease i n the Tibetan

Terri e r, h owever, was d ist i nctive i n t hat affected animals showed signs of

n ight b l i ndness and o n ly s l ight neuro log ic dete rio ration after a number of

years. l t i s t hought to represent an adu l t fo rm of ce ro id- l ipofusci nos is

somewhat sim i lar to Kufs disease of humans (R i is , et al. , 1 990).

9.2 SPECIAL MATERIALS AND METHODS

9.2.1 CANINE TISSUES

F rozen b ra i n s from a 2 year old Borde r Co l l i e and a 9 year o ld Tibetan

Terr i e r eut h a n ased i n the te rmi na l stag e s of ceroid- l i pofusci n os is were

obtained from V. Studde rt ( U nive rsity of Melbourne , Austral ia} and R. Ri is

(Corne l l U n iversity, U .S .A. ) respect ive ly . They were t ransported in l iquid

n itrogen and stored at -20°C u nt i l used.

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8 1

9.2.2 ISOLATION OF CANINE LIPOPIGM ENT BODIES

Lipopigment was isolated from the frozen b ra in t issues and i nvestigated by

the methods described in section 8.2.2.

9.3 R ESULTS

9.3.1 Characteristics of canine l ipopigment

Iso lated l i pop ig ment bodies from the Bo rd e r Co l l ie f rozen b rai n t issue

showed the presence of membraneous e lectron dense granu lar structu res

simi lar to those observed from isolated ovin e and bovine l ipopigment bodies

(Fig . 9 . 1 A) . The Tibetan Terrier l ipopigme nt was more heterogeneous in

appeara n c e . E l ect ro n de nse g ra n u la r s t ruct u res and characte r ist ic

membraneous whorls s im i lar to those fou nd i n sect ions of neu rones and

macrophages of affected brain (R .D. Jo l ly , pers. comm.) were found (Fig .

9. 1 B & C) .

Fig.9.1 Thin section e lectron micrographs of l ipopigment isolated from frozen Border Collie brain (A) and Tibetan Terrier brain (B and C). Magnification X 2 1 ,000.

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8 2

These structures were observed amongst subce l lu lar debris which i ndicated

that the iso lated preparations were not as homogeneous as those from ovine

and bovi ne t issues descri bed i n p revious chapte rs . I n suff icient mate rial

p r e c l u de d f u rt h e r pu r i f i cat i o n by a seco n d C s C I i s o pycn i c d e n s i ty

centrifugation step. However, sufficient l ipopigment bodies were present to

allow further analysis.

9.3.2 Amino acid sequencing of canine l ipopigment

When al iquots of the brai n l ipopigment d isso lved in formic acid were loaded

o nto the p rote i n seque ncer as desc ri bed i n sect ion 4 .2 . 2 , a seq u e nce

i dentical to that of the fi rst 1 6 amino-te rmi nal residues of subu n it c were

detected i n p reparat ions from both breeds. A high background precluded

fu rther sequ enci ng beyond 1 6 cycles (Fig . 9 .2 ) . The sequence, G ly-Pro­

G iu-Tyr, detected previously in ovi ne pancreatic l ipopigment, was also able

to be assig ned in the fi rst few cycles from the Tibetan Terrie r l ipopigment

preparation.

A 1000

(/) Q) 0 E 1 00

8 a:

B 100

(/) Q) 0 E 8 a:

1 0+--+--+--+--+---+--+----+-------l 1 0+---+--t--+---+--+----i-+--� 0 2 4 6 8 1 0 1 2 14 1 6 0 2 4 6 8 10 1 2 14 16

Fig.9.2

Cycle number Cycle number

PTH amino acid yields of the first 1 6 amino-terminal residues of subu nit c obtained from the Border Collie (A) and Tibetan Terrier (B) lipopigment. Initial yields were read from the intercept of the repetitive yield slope with the y-ax is .

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8 3

9.4 D ISCUSSION

The presence of the 1 6 amino-terminal residues of subunit c in l ipopigment

i solated from the two can i ne breeds suggested that they also be longed to

the forms of ceroid-l ipofuscinoses that specifically store subunit c. The molar

quant ity of subun it c t hat coup led was dete rm i ned as before , from the

repetitive yield graphs of the PTH amino acids obtained at each cycle (Fig .

9 .2) . If the fu l l 75 residue protei n was stored , estimates of 55% and 33%

were calcu lated for t he contribut ion of subun it c to the total l i popig ment

masses from the Border Col l ie and Tibetan Terri er, respectively. These

estimations are min imum values because of relative impurity of preparations

and the fact that the i n itia l reactions in the sequencer are not quantitative .

They are also based on the assumption that the ful l protei n is stored as i n

t h e ovi ne and bov i n e forms o f t he d isease (Chapters 5 & 8) . Fu rther

c haracterisation o f the stored protei n was not possible due to the l im ited

amount of material avai lable.

As the development of modern breeds with in a species is relatively recent it

i s l ikely that some forms of the disease with in the same species may reflect

the same mutation . I n th is regard, the diseases i n the Border Coll ie (Taylor

and Farrow, 1 988) and B lue Healer dog (Cho , et al., 1 986 ; Wood, et al.,

1 987) have been shown to be cl i n ical ly and patho log ical ly s im i lar to the

English Setter disease (Koppang , 1 973/74 ; 1 988) , and may reflect the same

m utation . The disease in Tibetan Terrier is however, disti nctively d ifferent

( Ri is, et al., 1 990).

The fi nd ing of two d ist inct diseases in dogs wh ich both store at least an

amino-terminal fragment of subunit c i n l ipopigment, i ndicates two distinct

m utations. Whether these affect the same gene or different genes may be

determ ined by cross breeding experiments. If the same gene i s mutated

t hen affected offspri ng should have a disease with characteristics between

t he pare nt types. I f no d i sease resu lts f ro m the cross breed i ng t h e n

i nvolvement of a second mutant gene is implied. The different human forms

of the d isease cou ld reflect simi lar mutations.

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C H A P T E R 1 0

GENERAL DISCUSSION

I n born e rrors of m etabol ism are reflected by e levation of the deficient e n zy me's substrata or de rivatives of it , a p ri nciple fi rst e n u nciated by Garrod i n 1908. I n the case of storage diseases, characterisation of the domi nantly stored species has led in many instances to elucidation of the u nderlyi ng biochemical defect. The same p ri nciple should therefore be expected to hold for the ceroid-lipofusci noses. Palmer, et al. , (1986a,b) showed that in the ovi ne disease the major sto red components were low m o lecu lar we i g ht p rote i n s in lysoso me d e ri ved l i po pig m e nt bodi e s . C haracteri sat i o n o f t h ese prote i n s b y a co m bi n at ion of LDS-PAG E , quantitative amino acid sequenci ng and mass spectroscopy studies has l e d to the m ajor sto red compo n e nt be i ng i d e nt ified as the co m plete d i cyclohexylcarbodi i m ide ( DCCD) reactive p roteol ipid (subunit c of the

, · i,"o_cpq·�a��.,.;£ ATP synt h ase ) . T h i s i s a h i g h ly hydro p h o b i c p rote i n no rmal ly found i n the i nner mitocho ndrial membrane as part of the ATP synthase o ligome ric protei n co mplex. The ATP synthases (also known as proton translocating ATPase, H+-ATPase, or F1 F0-ATPase) are fou nd in the cytoplasmic membranes of eubacteria, the thylakoid membranes of ch loroplasts and in the i n ne r membranes of mitochondria. Their common fu nction is to catalyze the synthesis of ATP fro m ADP and phosphate by employing an e lectrochem ical pote ntial g radi e nt across the mem brane. T h e m i t o c h o n d ri a l A T P s y n t h a s e i s a c o m p l e x of 14 d i ffe re n t po lype ptides; six of th em (a, � . g , cr , e , OSC P and I ) constitute F1, the extri nsic membrane domai n of the complex. The remainde r (ATPase-6 , su bunit c, subu nit b, subunit d, A6L) make u p the membrane sector F0. Two additional components, subu nit e and F6 are also fou nd (Walker, et

al. , 1 9 90 ) . S u b u n it c, i s an e sse n t i a l e l e m e nt i nvolved i n t h e H + t ra n s locat i n g pro p e rt i e s o f Fo a n d acco u nts fo r 2-4% o f t h e i n n e r mitochondrial membrane protein (Sebald and Hoppe , 1 981 ).

So lubi l ity of the l ipopigment protei ns in LDS, in the presence o r absence of 2-mercaptoethanol was impo rtant as it showed that the aggregation

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85

behaviour of these p rote ins i n dodecy l su lphate was not due to the

presence of covalent disulphide bonding between them. The difficu lty of

separat i ng the m aj o r 3 . 5 kDa l i pop igment p rote i n f ro m t h e oth e r

l i popig ment prote ins led to the non-traditional approach of load ing a n

apparent mixture of protei ns onto the amino acid sequencer (Chapter 4).

lt was reasoned that should a sequence emerge, then it would be of the

low molecular weight component shown in Chapter 3 to be present in

total l i po pi g ment p rote i n as t h e dom inant mo lar component . The

approach led to the detection and quantitation of subunit c i n l ipopigment.

Ident i ficat ion of the 1 4 . 8 and 24 kDa l ipop igm e nt protei ns as being

o l igo m e rs of the m ajor stored p rote i n (subun i t c) strengthened the

rat ionale used i n the earl ie r sequenci ng stud ies on tota l l i popigment

p rotei ns. This result explained the difficulties encountered in separati ng

the 3.5, 1 4.8 and 24 kDa proteins by conventional techniques. Subunit c

was therefore the major protein present i n l ipopigment bodies. No other

m itochondrial protein was detected during th is study.

The aggregation behaviour of the proteol ipid subunit c, particularly i n

dodecyl su lphate , i s wel l documented (Sebald and Hoppe, 1 98 1 ) . As

noted earl ier the agg regation behaviour of subunit c stored in l ipopigment

was not due to the presence of inte rmolecular disu lphide bonding. The

u nusual stabil ity of the ol igomers of subunit c in l ipopigment was shown

by the 1 4.8 kDa protei n that diffusion e luted from a polyacrylamide gel

behavi ng as a component distinct from the 3.5 kDa protein (Chapter 5).

The physico-chemical basis for this ol igomeric stabi l ity remains unknown .

The e lectrophoretic variabi l ity of the 1 4.8 and 24 kDa bands observed

between different iso lates and between different gels of the same isolate

could now be rationalized on the basis of variable aggregation of subunit

c present. The behaviour of the 1 25 todinated l ipopigment proteins on

storage described in Chapter 3 was also probably due to this agg regation

p roperty of subunit c. The radioiod ination of l ipopigment protei ns as a

means of obtai n ing a lab e l led substrata t h e refo re warrants fu rt h e r

i nvestigation.

The stored protein was shown to account for at least 50% of the isolated

ovine l i popigment mass, and as such was considered specif ic to the

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86

disease. Its re lat ion to the other components i s shown i n Table 1 0 . 1 ,

which is derived from Palmer,et al., 1 986b; 1 988; Hal l ,et al., 1 989, and

the present study. As noted in Chapter 1 , the l ipid and metal contents of

l i popi g ments were cons idered to be cons iste nt with the i r lysosomal

orig in .

Table 1 0.1 Ovine pancreatic l ipopigment composition

Components (%)

Subunit c 50

Other proteins 20

P hospholipids 1 0.5

Neutral l ipids 1 0.5

Metals

Dolichoi-P-P-Oiigosaccharides

Other

1 .3

2

5.7

The sequencing approach used in this study has proved to be extremely

robust. The amino-termi nal sequence of subunit c can be determined

even when total l ipopig ment bodies d issolved i n formic acid are loaded

o nto the a m i no acid sequencer. There is thus avai lable a re lative ly

s i mp le met h od fo r dete rm i n i n g whether a d i sease , d i agnosed o n

morpho log ica l g ro u nds as ce ro id- l i pofusci nos is , i s assoc iated with

storage of subun it c. Appl icat ion of th is methodo logy has shown two

d istinct ly different canine forms and a bovine form of the disease to store

at least an a m i no-te rm i nal frag m e nt and t h e com p l ete s u b u nit c,

respectively (chapter 8 and 9).

In paral lel studies Palmer, et al., ( 1 990) showed that the same protein is

a lso stored in the late i nfantile and juveni le human d iseases but not in the

i nfanti l e d isease. This latter resu lt demonstrated that not al l d iseases

fal l ing with in the general classification of ceroid-l ipofuscinosis are closely

re lated.

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The described methodology could be used to determine the dominantly

stored components from the other human variants and animal forms of

the d isease. Once l i popigment is isolated from subcel l u lar organel les

and debris , only four al iquots of isolated l ipopigment are required ; one for

e l ect ro n m ic rosco p y t o dete rm i n e pu ri ty of preparat i o n , two fo r

quantitative amino acid analysis and amino-terminal sequencing and one

a l iquot fo r cyanoge n bro m ide c leavage to d ete rmi ne the carboxy l ­

terminus of subunit c. lt is l ike ly that a classification of subunit c storage

d i sease cou ld be made from the mere dem o n strat ion of the amino­

te rm i n u s of subu n i t c by d i rect sequenci ng stud ies , when there i s

i nsufficient material for the other analyses. Such was demonstrated in the

the two canine diseases (Chapter 9).

The storage of subunit c rather than peroxidised l ipid/protein po lymers as

previously postu lated , al lows a major conceptual change in the approach

to cero i d - l i pofusci n o s i s research . H i stoc h e m i cal and f luo rescent

properties of the stored l ipopigment which were i nterpreted to be due to

the i r l i pid nature , l ed to a n umber of theories on pathogenesis , most

based on l ipid peroxidation (Chapter 1 ). None of these have stood the

test of time or led to the elucidation of the underlying biochemical defect

i n the ceroid- l ipofusci noses. An "acidic l ipid po lymer" extracted from

l ipopigments by l ipid solvents and named "cero id" was proposed as the

"stored substance" in the neuronal ceroid- l ipofuscinoses (Siakotos, et al. ,

1 972). I n retrospect , it seems l ike ly that the designated " acidic l ipid

polymer'' was the proteol ipid , subunit c.

The extreme hydrophobic nature of subunit c resu lts in it having unusual

physical properties, including the l ipid l ike solubi l ity i n

chloroform/methanol mixtures. lt i s this property which results i n it being

referred to as a proteol ipid. The definition is an operational one and does

not imply the presence of covalently bound lipids. Subunit c stains poorly

with Coomassie blue and g ives i naccurate protei n estimat ions by the

Lowry method (Sebald and Hoppe , 1 981 ) . These characteristics may

h e lp exp lai n why t h i s type of prote in was not recog n i zed as bei ng

associated with the ceroid-l ipofuscinoses in the past.

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M a n y characte r ist i cs of t h e sto red l i pop i g m e nt bod ies and othe r

e nigmatic observations can now be explai ned by the knowledge that it is

subunit c that is stored. These i nclude the characteristic h istochemical

feature of staining with certain lipid stains. Lipid stains can be expected

to react with the neutra l l ipids and phospholipids present i n l ipopigment

bodies but may also react with the hydrophobic proteo l ipid subunit c.

Luxol fast blue , considered a stain for phospholipids and

phosphol ipid/protein complexes i n fixed t issues (Pearse, 1 985) , is also

used in neuropatho logy as a stai n for myel in . As mye l in contains the

p rototype proteol ipid protein (Folch and Lees, 1 95 1 ) it is l ikely that it is

t h is type of mo lecule that stains both mye l in and l ipopigment bodies in

paraffin block sections (Jol ly, et al. , 1 989). This is supported by the fact

t hat luxol fast blue stain ing is a feature of al l but the infanti le human form

of ceroid- l ipofusci nosis ( Lake , 1 984) i n which subun i t c is not stored

( Palmer, et al. , 1 990). The l uxol fast blue stai n ing may therefore have

some diagnostic importance.

Autofluorescence in the yel low-orange reg ion (520-540 nm) is another

characteristic feature of stored lipopigment. To date neither the nature of

t h e f lourophor nor its s ig n if icance , if any, has been dete rm i ned. A

n u m ber of mechan isms whe reby prote i ns can be modif ied to form

f luorophores have been proposed. These include peroxidation reactions

l eading to the formation of malonaldehyde, which can react with protein

to fo rm fluo rescent sch iff base products (Chic and Tappel , 1 969a) and

n o nenzym ic g lycat ion (g lycosy lat i on ) of lysi ne res idues producing

h eterocycl ic f luorescent compounds (Pongor, et al. , 1 984) . There has

however, been no evidence for t he presence of such compounds i n

l i popigment bodies iso lated from t h e cero id-l ipofuscinoses. Palmer, et

al. , ( 1 986a) suggested that fluorescence may be due to a property of the

i nteraction of the stored protein and its pecu liar l ipid environment. This

i de a i s s u pported by reco nst i t u t i o n of f l u o re scen t b o d i e s fro m

nonf luorescent pu rified subunit c and phospholipids (D. N . Palmer, pers.

comm.) .

Detect ion of S-methylated methionine i n "storage protein" i solated from

the late i nfantile form of the human disease has recently been reported

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89

(Katz and Gerhardt, 1 990) . lt was suggested that such modified amino

acids might be responsib le for the autofluorescence of storage bodies

u nder uv i l l um inat ion . However, the amino acid compositions of the

protei n i so lated from l ipopig ment in the study differs substantially from

that of subunit c, identified as the major stored species i n the late i nfanti le

d isease (Palmer, et al. , 1 990) . The s ignificance of this observation i n

terms of a possible post-translational modification to subunit c stored i n

t he ceroid-l ipofuscinoses remains to be clarified. There was however, no

evidence in the present studies to suggest that the stored protein in the

ov i n e , bovi ne and can i n e fo rms of ce ro id - l i pofusci n osis was post­

translationally methylated.

T h e pre se nce of la rg e amou nts of t h e co m p lete and appare nt ly

u n modif ied subun it c i n the ce ro id- l i pofusci noses i nd icates that the

biochemical basis of the lesion in these diseases is l ike ly to involve the

metabol ism of subunit c .

I n humans and catt le , subun it c has two expressed nuclear genes, P1

and P2. These encode precursor protei ns contain i ng the same mature

protei n , but with diffe rent positively charged amino-terminal extensions

(presequences) of 61 and 68 amino acids respectively (Gay and Walker,

1 985 ; Dyer, et al. , 1 989) . I n addition to the P1 and P2 genes, numerous

sp l iced and partly spl iced pseudogenes re lated to P1 or P2 have also

been discovered in human, bovine and ovine tissues (Dyer and Walker,

1 990 ; Medd, et al. ,unpublished) .

The presequences contain the necessary information to target the protei n

to m itochondria (van Loon , e t al. , 1 987; van Loon and Schatz, 1 987 ;

Hart l , et al. , 1 986 ; 1 987). Import receptors on the outer su rface of the

outer mitochondria l m e m brane are i nvo lved i n the i n it ial recog n it ion

process of these precursors (Zwizinski , et al. , 1 984 ; Pfal ler, et al. , 1 988;

Pfa l l e r a n d N e u pe rt , 1 987) . 1t i s a lso thou g ht that t h e cytoso l i c

p recurso rs o f m itochondria l protei n s have to m ai nta in an u nfo lded

conformation for membrane translocation (Hartl , et al. , 1 989) . This may

be achieved by the i nteraction with the heat shock proteins of relative

molecular mass 70 kDa and by the action of other factors in the cytosol

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90

( Deshaies , et al. , 1 988; Pel h am , 1 989) . The transport of precursors

across the two mitochondrial membranes are thought to occur i n a single

ste p at contact sites betwee n the oute r and i n ne r membranes by a

process requi ring an electrochemical potential g radient across the i nner

m itochondrial membrane (Schleyer, et al. , 1 982 ; Sch leyer and Neupert,

1 985 ; Schwaiger , et al. , 1 987) . The amino-te rmina l extensions are

removed during , or short ly fo l lowing , the t ranslocat ion process by the

action of a specific matrix localised metal dependent processing enzyme

i n a two step process ( Pfan ner, et al. , 1 988; Schm idt, et al. , 1 984;

Hendrick, et al. , 1 989) .

The underlyi ng biochemical anomaly leading to the storage of subu nit c

i n lysosome derived l ipopig ment bodies remains to be defined. There

are a number of possib le mechanisms that cou ld lead to its abnormal

accumu lation due to defect(s) occu rring at several points in the normal

biosynthetic pathway of this protein.

The gene sequences coding for subunit c (P1 and P2) i n sheep affected

with ovine ceroid- l ipofuscinosis have been sequenced and shown to be

identical to those of contro l sheep. Simi lar amounts of the mRNA for P1

a n d P2 were fou nd i n n orma l and d iseased s h eep l ive r t issue by

Northern blot analysis (Medd , et al. , 1 990). The storage of subunit c i n

l i po p i g m e nt bod ies i s t h e refore not cau sed by a m utat i o n i n the

presequences of either P1 or P2 resu lting in misdirection o f precursors of

subu n it c d i rectly to lysosomes rather than to m itochondria , nor by a

m utation affecting the normal gene products. These genes are normal ly

reg u l ated at the t ranscri pti onal leve l . Over-express ion resu lt i ng i n

subunit c being synthesised i n g reater amounts than i s normally requi red

for assembly of the ATP synthase also seems unl ikely on the basis of the

Northern b lot resu lts. However, as the bovi ne P1 and P2 genes are

known to be expressed i n a tissue-specific manner (Gay and Walker,

1 985), the possibi l ity exists that the lesion i n ovi ne ceroid-l ipofuscinosis

cou ld resu lt from a defect in the tisSUe.JIE· '!!tiC expression of these genes.

L it t le is k n own about t h e mechan isms u nd e rl y i ng the fo ld ing and

assembly of imported prote ins i nto ol igomeric enzyme complexes with in

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91

m itochondri a nor about the coordinat ion of assembly of m itochondrial

a n d n uclear gene products. A nuc lear encoded heat s hock protei n

( hsp60) found i n the mitochondri al matrix has recently been shown to be

requ i red for the correct assembly into o ligomeric complexes of protei ns

i mported i nto the mitochondrial matrix (Cheng , et al. , 1 989 ; Readi ng , et

al. , 1 989) . l t has been suggested that a fu nct ion of the hsp60 i s to

p revent the formation of misfo lded protei ns (Ostermann , et al. , 1 989) .

The lesion cou ld i nvolve a defect in a simi lar component required for the

co rrect fold i ng and o ri entat ion of subu n it c i nto the ATP synthase

complex.

S u bu n it c p lays a key ro le in the assembly and stab i l ity of the F0-

c o m po nent , wh ich is essent ia l to the fo rmat ion of a fu nct i onal ATP

synthase complex (linnane , et al. , 1 985; Hadikusumo, et al. , 1 988) . lt is

therefore un like ly that the genetic lesion i nvolves a component requi red

fo r co rrect assembly of subu nit c i nto the ATP synthase o l igomeric

complex. D isrupt ion of the ATP synthase wou ld lead to uncoupling of

oxidative phosporylation and subsequent death of the cel l . Mitochondria

i solated from diseased kidneys were also shown to maintain structural

and functional integrity comparable to those isolated from control animals

(Chapter 6) .

Storage of the ful l subunit c, identical to that of the mature mitochondrial

p rotei n , suggests that the ami no-term i nal preseque nces have been

cleaved by the specific protease located i n the mitochondrial matrix. This

i mpl ies a defect in its degradative pathway fol lowing correct incorporation

i nto mitochondrial i nner membranes. The normal amounts of this protein

shown to be present in affected liver i nner mitochondrial membranes by

LDS-PAGE and the normal function ing of affected kidney mitochondria

(Chapter 6) suggested that the accumu lation was not occurring i n the

mitochondrion.

Lysosomes catabo l i se po l ym e ri c mater ia l by the act i o n of many

e n zymes . There are a numbe r o f i n bo rn errors o f such catabo l ism

affect ing complex l ipids , po lysaccharides and mucopolyaccharides, but

none have been described i nvolvi ng proteins . There is no reason why

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92

such errors should not occur by chance. Fai lure to recognize them may

be associated with the relative lack of specificity of lysosomal proteases.

The cleavage specificities of lysosomal endopeptidases (cathepsi ns) and

exopeptidases (Kirschke and Barrett, 1 987) are such that a deficiency of

o n e cou ld be theoretical ly masked and covered by the activity of the

rem ainder. Therefore a deficiency of a major cathepsin as a source of

subun it c sto rage seems u n l i kely . However, there could be a specific

u nknown lysosomal protease requi red to degrade subunit c or more l ike ly

a cofactor specifically associated with the in it ial degradative step for this

proteo lipid. A deficiency of such a cofactor is known and accounts for

o n e of the variants of GM2 Gangl iosidosis (Conzelmann and Sandhoff,

1 9 7 8 ) . l t i s a l so poss i b l e t h at the n o rma l d e g radat i ve e n zymes

associated w i th the catabo l i sm of subun it c are unaffected and that

s u b u n it c i s presented to t h e m i n a conformation that i s resistant to

p roteo lys is . Li popigment sto rage bodies have bee n i nterpreted as

co m p l e x parac rysta l l i n e st ructu res t h at are not degraded by t h e

lysosomal system (Jolly, et al. , 1 989). Analogous protei n i nclusion body

agg regates res istant to ce l lu lar proteases are found i n bacteria as a

resu lt of over-expression of cloned mammalian genes (Cheng , et al. ,

1 981 ; Kane and Hartley, 1 988)

M itochondr ia l p rote i n deg radat ion and prote i n turnove r are poorly

u nderstood. lt is generally assumed that mitochondria are encapsulated

i nto auto p h ag i c vacu o l e s and t h e n deg raded by a combi nat io n of

lysosomal and mitochondria l proteases (Luzikov, 1 985; Pfeifer, 1 987) .

Lipopigment bodies in ovine foetuses and neonates have been described

a s w h o r l s of b i layer m e m b ra n e s co n de n s i n g i n to m u lt i l a m e l l a r

paracrystal l ine structures (Jol ly, et al. , 1 989) . These were thought to be

the simplest and earliest lesions yet noted and suggested that autophagy

of m itochondria was not the source of subun it c found i n l ipopigment

bod ies . The fact that no oth e r mitochondria l ATP synthase prote in

components were shown to be stored during this study also suggest that

t h i s m ech a n i s m was u n l i ke l y to be t h e maj o r ro u t e l e ad i ng to

accumulation of subunit c i n lysosome derived l ipopigment bodies.

M itochondr ia l prote ins h ave been shown to have a heterogene ity of

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93

measured half l ives ranging from 20 min to several days. Proteins with in

t h e s a m e m i toc h o n d ri a l com partmen t and eve n w it h i n the same

mu ltisubunit complex have been shown to differ widely i n their measured

tu rnover rates (li pskey and Pedersen , 1 981 ; Hare and H edges, 1 982) .

These observations suggest the presence of mitochondria l proteolytic

e n zymes capable of selectively contro l l ing the turnover of m itochondrial

proteins. Several mitochondrial membrane bound proteases have been

identified , i nc luding an ATP dependent , vanadate sensitive p rotease

l oca l ised i n the mitochondria l m atri x wh ich is capable of hydro lysing

p rote ins to amino acids ( Desautels and Goldberg , 1 982a,b) . An ATP

i ndependent protease that is capable of degrading oxidative ly denatured

p roteins in the mitochondrial matrix has also been reported (Marci l lat, et

al., 1 988) . 1 t i s not yet known whether any of these p roteases are

i nvolved i n the normal degradative pathway of subun it c. If the defect

i nvo lves a mitochondrial protease then it is l ikely to i nvolve an in itial step

i n the catabo lism of this mo lecu le, as the fu l l subunit c protei n is stored.

G enetical ly d isti nct human and an imal forms of the disease have been

shown to sto re subunit c. This i mplies that they are l ike ly to represent

d i ffe rent mutat ions of the same o r different genes associated with the

metabo l ism of subunit c. There are many instances in other lysosomal

storage diseases where a ser ies of m utat ions affect ing one or more

genes resu lts i n storage of the same substrata e .g . G M2 gangl ioside

( Neufeld, 1 989) . If two or more mutations affect the same gene, then

i ntermediate diseases associated with double heterozygosity can be

expected. Although this has not been demonstrated in any of the ceroid­

l i pofu sci noses , t he larg e n u m ber of h u m a n vari a nts suggest th i s

possibi l ity. Linkage studies have reported l inkage of the juven i le form to

the haptog lobi n locus on chromosome 1 6 (Eiberg , et al., 1 989) . Further

l i nkage studies and gene mapping may help defi ne the defective gene or

genes. Inter breed genetic studies between clinically and pathological ly

d ist inct forms of the disease such as the Border Coll ie and the Tibetan

Terriers , both shown to store subunit c, could indicate whether more than

one gene is associated with defects of subun it c metabolism leading to

ceroid-l ipofuscinosis (Chapter 9).

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94

C ha racterisat ion of the dom i nant ly sto red co mpo n e nt i n a storage

d i s e as e s h o u l d ref l e ct t h e u nd e rly i n g m et ab o l i c d efect . Th i s

characterisation has been achieved. Defin ing the metabolic process that

leads to the abnormal accumu lat ion of subunit c i n lysoso me derived

l ipopigment remains to be done. Its relationship to the neuronal necrosis

m ay b e a key to u nd e rst an d i ng t h e pat hoge nes i s of t h e ce ro id ­

l i pofusci noses. Storage of physical ly s im i lar l i popig ment occurs i n a

var iety of oth e r lysosomal sto rage d iseases and with age . Severe

neuronal necrosis is , however, unique to the ceroid-l ipofusci noses. This

suggested that in the cero id- l i pofusci noses, neurona l necros is was

associated with the metabol ic lesion rather than storage of l ipopigment

per se (Jol ly, et al. , 1 989 ; 1 990).

R esearch into the ceroid-lipofuscinoses is main ly driven by the need to

u nd e rstand the i r pathogeneses so that bette r d iag nostic , control or

therapeutic strategies can be deve loped. In l ight of the results presented

i n t h i s study , e l ucidation of the biochemical defect may also he lp to

fu rt h e r u nderstand the b io logy of the mitochondr ia l ATP synthase

enzyme complex.

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95

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