Anatomical pipeline for source localization · Anatomical pipeline for source localization MNE software for processing MEG and EEG data, A. Gramfort, M. Luessi, ......

Alexandre GramfortAssistant Prof. Telecom ParisTech / CEA Neurospin

http://martinos.org/mne

Anatomical pipeline for source localization

MNE software for processing MEG and EEG data, A. Gramfort, M. Luessi, E. Larson, D. Engemann, D. Strohmeier, C. Brodbeck, L. Parkkonen, M. Hämäläinen, Neuroimage, 2014

Organizing your data

├── MEG

│ └── daniel

│ └── somstim_raw.fif

└── subjects

├── fsaverage

└── daniel

study

$ recon-all -s ${SUBJECT} -i xy000000.nii -all

FreeSurfer recon

and just wait…

or better go to bed andcome back tomorrow…

$ recon-all -s daniel -i daniel_t1.nii -all

https://github.com/mne-tools/mne-scripts

Exploring the output with freeview

Coregistration withmne_analyze

http://martinos.org/mne/stable/manual/analyze.html?highlight=coordinate%20alignment#cacehgcd

Manual page:

Getting help• Documentation:

• http://martinos.org/mne/

• http://martinos.org/mne/python_tutorial.html (python tutorial)

• http://martinos.org/mne/auto_examples/index.html (python examples)

• Mailing list:

• http://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis

• Code:

• https://github.com/mne-tools/mne-python (mne-python code)

• https://github.com/mne-tools/mne-scripts (mne shell scripts)