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Adaptive Radiations . . . Systematics meets Ecology . . . Future of Molecular Systematics 1. Biogeography 2. Ecology 3. Genomics Phylogeny Development Genetics Taxonomy Cytology Ecology Biogeography Morphology Ecology and phylogenetics intertwined when looking at the emergence of life forms on earth and their subsequent diversification Emergence of Life Forms emergence of 3 domains of life with 6+ kingdoms Emergence of Life Forms rise of major lineages of eukaryota - many of which we do not yet know how related
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Adaptive Radiations Ecology Biogeography Genetics ...courses.botany.wisc.edu/botany_400/Lecture/0pdf/33AdapRadBW.pdf · Cytology Ecology Biogeography Morphology Ecology and phylogenetics

May 17, 2018

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Page 1: Adaptive Radiations Ecology Biogeography Genetics ...courses.botany.wisc.edu/botany_400/Lecture/0pdf/33AdapRadBW.pdf · Cytology Ecology Biogeography Morphology Ecology and phylogenetics

Adaptive Radiations

. . . Systematics meets Ecology . . .

Future of Molecular Systematics

1. Biogeography

2. Ecology

3. Genomics Phylogeny

Development

Genetics

Taxonomy

Cytology

Ecology

Biogeography

Morphology

Ecology and phylogeneticsintertwined when looking atthe emergence of life formson earth and theirsubsequent diversification

Emergence of Life Forms

• emergence of 3 domains oflife with 6+ kingdoms

Emergence of Life Forms

• rise of major lineages ofeukaryota - many of which wedo not yet know how related

Page 2: Adaptive Radiations Ecology Biogeography Genetics ...courses.botany.wisc.edu/botany_400/Lecture/0pdf/33AdapRadBW.pdf · Cytology Ecology Biogeography Morphology Ecology and phylogenetics

Emergence of Life Forms• movement of plants onto landand their subsequentdiversification

Ordovician-Devonian

Emergence of Life Forms

• and finally the rise and domination of flowering plants

Emergence of Life Forms

Emergence of flowering plants has two important facets:

1. Radiation - large number of species resulted

2. Adaptive - exploited incredible array ofecological strategies or niches

Adaptive Radiations

• in 130 my angiosperms dominatebiomes from tropical forests to arctictundra . . .

Page 3: Adaptive Radiations Ecology Biogeography Genetics ...courses.botany.wisc.edu/botany_400/Lecture/0pdf/33AdapRadBW.pdf · Cytology Ecology Biogeography Morphology Ecology and phylogenetics

Adaptive Radiations• . . . rainfallgradients from thewettest to the mostarid habitats onearth . . .

Adaptive Radiations• . . . life forms from giant emergenttropical trees to the tiniest aquaticduckweeds . . .

Adaptive Radiations• . . . and exploited reproductive biology in elaborate outcrossingand seed dispersal methods to forgoing sex altogether via apomixisand parthenogenesis

Adaptive Radiations• Angiosperms show all necessarycharacteristics of an adapativeradiation

• Key innovation spurring thisadaptive radiation?

flowers? triaperturate pollen?vessels?

Page 4: Adaptive Radiations Ecology Biogeography Genetics ...courses.botany.wisc.edu/botany_400/Lecture/0pdf/33AdapRadBW.pdf · Cytology Ecology Biogeography Morphology Ecology and phylogenetics

Variation in Lineage DiversityVariation in lineage diversity relates to the appearance of unequalnumbers of species in sister lineages

Besides some uniqueexceptions, the expectationis that sister lineagesshould show roughly equalnumbers of species - asthey are equal in age

What are the exceptions?

Variation in Lineage DiversityVariation in lineage diversity relates to the appearance of unequalnumbers of species in sister lineages

1. Differential extinction

One lineage (clade 1) ismore diverse simplybecause the other wasmaladapted perhaps to achanging environment

Variation in Lineage DiversityDifferential extinction is well known inthe fossil record:

6 great extinction eventsPleistocenemegafauna

Variation in Lineage DiversityDifferential extinction is well known inthe fossil record:

Diverse lycopods & horsetails in Carboniferous

Page 5: Adaptive Radiations Ecology Biogeography Genetics ...courses.botany.wisc.edu/botany_400/Lecture/0pdf/33AdapRadBW.pdf · Cytology Ecology Biogeography Morphology Ecology and phylogenetics

Variation in Lineage DiversityVariation in lineage diversity relates to the appearance of unequalnumbers of species in sister lineages

2. Coevolution

One lineage (clade 2) ismore diverse because ofthe ability to co-evolve withother organisms

Variation in Lineage DiversityFlowering plants show remarkable abilityto co-evolve with other organisms: Pollination

Variation in Lineage DiversityFlowering plants show remarkable abilityto co-evolve with other organisms:

Chemical arm’s race

Phyllobrotica

Scutellaria

Variation in Lineage DiversityVariation in lineage diversity relates to the appearance of unequalnumbers of species in sister lineages

3. Adaptive radiation

One lineage (clade 2) ismore diverse due tocombination of speciesradiation and adaptationinto many ecological zonesperhaps due to the origin ofa novel feature

Page 6: Adaptive Radiations Ecology Biogeography Genetics ...courses.botany.wisc.edu/botany_400/Lecture/0pdf/33AdapRadBW.pdf · Cytology Ecology Biogeography Morphology Ecology and phylogenetics

Adaptive Radiations“. . . species occasionally arriving after long intervals in a new andisolated district, and having to compete with new associates, willbe eminently liable to modification, and will often produce groupsof modified descendants” [Darwin, 1853]

Adaptive Radiations“. . . an isolated region, if large and sufficiently varied in itstopography, soil, climate and vegetation, will give rise to adiversified fauna according to the law of adaptive radiation fromprimitive and central types. Branches will spring off in alldirections to take advantage of every possible opportunity ofsecuring food.” [Osborn, 1900]

First use of termadaptive radiation

“ . . . an isolated region, if large and sufficiently varied in itstopography, soil, climate and vegetation, will give rise to adiversified fauna according to the law of adaptive radiation fromprimitive and central types. Branches will spring off in alldirections to take advantage of every possible opportunity ofsecuring food.” [Osborn, 1902]

Adaptive Radiations“. . . adaptive radiation strictly speaking refers to more or lesssimultaneous divergence of numerous lines all from much thesame ancestral adaptive type into different, also divergingadaptive zones.” [Simpson, 1953]

Issues in Adaptive Radiations• It is clear that few of the classic cases of adaptive radiationhave been studied rigorously from a combined systematic andecological point of view

Two main issues:

Page 7: Adaptive Radiations Ecology Biogeography Genetics ...courses.botany.wisc.edu/botany_400/Lecture/0pdf/33AdapRadBW.pdf · Cytology Ecology Biogeography Morphology Ecology and phylogenetics

Issues in Adaptive Radiations1. The very characters whose diversification is being examined(e.g. beak size, shape, function in Darwin’s finches), can also beused to determine relationships and classify the organismspossessing them - potentially circular!

Issues in Adaptive Radiations2. Extreme convergence and divergence is likely in groups thatare undergoing adaptive radiations

Divergence: changes in homologous structuresamong related species; changes permit eachspecies to specialize in different environments

Convergence: changes in analogous structuresamong unrelated species; changes permit eachspecies to specialize in the same environment

Issues in Adaptive RadiationsThese two issues in studying adaptive radiations are bestaddressed by using an independent source of information -molecular phylogenetic characters

Phylogeny

Development

Genetics

Taxonomy

Cytology

Ecology

Biogeography

Morphology

Adaptive RadiationsIllustration of these problems with 3 examples of adaptiveradiation

Page 8: Adaptive Radiations Ecology Biogeography Genetics ...courses.botany.wisc.edu/botany_400/Lecture/0pdf/33AdapRadBW.pdf · Cytology Ecology Biogeography Morphology Ecology and phylogenetics

Rift Valley CichlidsCichlids possess a double jaw system, the pharyngeal jaw isthought to be a key innovation for species proliferation anddivergence in feeding strategies

Lake Tanganyika Lake Malawi

• species with similar feedingstrategies between lakes related?• species showing different feedingstrategies within a lake related?

Rift Valley CichlidsCichlids possess a double jaw system, the pharyngeal jaw isthought to be a key innovation for species proliferation anddivergence in feeding strategies

Lake Tanganyika Lake Malawi

• divergence within each lake!

mtDNA tree

• convergence between lakes!

Salvia Staminal LeverThe giant genus Salvia (Lamiaceae) possesses two stamens withelongated connective tissue

Salvia Staminal LeverPosterior thecae abort, fuse, and can form a lever device

p

a

Salvia4 stamens 2 stamens connectives

Page 9: Adaptive Radiations Ecology Biogeography Genetics ...courses.botany.wisc.edu/botany_400/Lecture/0pdf/33AdapRadBW.pdf · Cytology Ecology Biogeography Morphology Ecology and phylogenetics

Salvia Staminal LeverThe resulting staminal lever has been regarded as a keyinnovation for the species diversification in Salvia viapollination shifts

What does molecular phylogenetics indicate?

Jay Walker _ UW Grad

Salvia Staminal Lever• Salvia is polyphyletic with 3separate lineages of “Salvia”each sister to other generawithout elongated connective

• lever mechanism correlatedwith significant speciesdiversification each time itevolved relative to sisterlineages - key innovation!

250 spp.

500 spp.

90 spp.

• lever mechanism evolvedconvergently 3 times

lever mechanism

Hawaiian Island RadiationsIsolated, oceanic islands provide some of the most classic examplesof adaptive radiation

• isolation - once youget there, you can’tgo back

• great ecologicaldiversity - manyniches to exploit2 volcanic

ridges

NE trade winds

• low diversity -many niches open

• low competition,predation, herbivory- you can bedifferent

Hawaiian Island RadiationsIsolated, oceanic islands provide some of the most classic examplesof adaptive radiation

• archipelago is aseries of geologicallydated islands• fixed volcanichotspot but Pacificplate conveyor belt

Page 10: Adaptive Radiations Ecology Biogeography Genetics ...courses.botany.wisc.edu/botany_400/Lecture/0pdf/33AdapRadBW.pdf · Cytology Ecology Biogeography Morphology Ecology and phylogenetics

Hawaiian Island RadiationsIsolated, oceanic islands provide some of the most classic examplesof adaptive radiation

• older to youngerislands allow fordispersalbiogeographicalanalysis

Hawaiian Island RadiationsBest studied group is the Hawaiian silversword complex

Phylogenetics, cytology,biogeography, ecology,physiology, hybridization,evolution

Silverswords

N

Kauai-11 endemic

Oahu-2 endemic

Maui Nui-7 endemic

Hawaii-3 endemic

Wilkesia gymnoxiphiumDubautia paleata Argyroxiphium

sandwicense

Plus 5 indigenous species

Tarweed (California USA) OGDubautia paleata KauaiDubautia waialealae KauaiDubautia laxa indigenousWilkesia gymnoxiphium KauaiWilkesia hobdyi KauaiArgyroxiphium caliginis MauiArgyroxiphium grayanum MauiArgyroxiphium virescens MauiArgyroxiphium sanwicense M&HArgyroxiphium kauense Hawaii

Silversword Cladogram (simplified)

Hawaiian Island Radiations

oldest

youngest island

5.2 myaestimate

Page 11: Adaptive Radiations Ecology Biogeography Genetics ...courses.botany.wisc.edu/botany_400/Lecture/0pdf/33AdapRadBW.pdf · Cytology Ecology Biogeography Morphology Ecology and phylogenetics

Hawaiian LobeliadsWhy the Hawaiian lobeliads?

• largest group: 6genera, 115 species)• 1/9th of nativeflora• considered derivedfrom 3-5 separatecolonizations• phenomenalvariation in habitat,life form, flowers,and fruits

Hawaiian LobeliadsWhy the Hawaiian lobeliads?

• appear to have co-evolved with theendemic Hawaiianhoneycreepers

Hawaiian LobeliadsWhy the Hawaiian lobeliads?

• appear to have co-evolved with theendemic Hawaiianhoneycreepers• honeycreepersrepresent a separateadaptive radiation

Lobelia gloria-montis

Lobelia telekii - Mt. Kenya

Hawaiian LobeliadsWhat are the Hawaiian lobeliads?

Page 12: Adaptive Radiations Ecology Biogeography Genetics ...courses.botany.wisc.edu/botany_400/Lecture/0pdf/33AdapRadBW.pdf · Cytology Ecology Biogeography Morphology Ecology and phylogenetics

Brighamii

Hawaiian LobeliadsWhat are the Hawaiian lobeliads?

Delissia

Hawaiian LobeliadsWhat are the Hawaiian lobeliads?

Trematolobelia

Hawaiian LobeliadsWhat are the Hawaiian lobeliads?

Clermontia

Hawaiian LobeliadsWhat are the Hawaiian lobeliads?

Page 13: Adaptive Radiations Ecology Biogeography Genetics ...courses.botany.wisc.edu/botany_400/Lecture/0pdf/33AdapRadBW.pdf · Cytology Ecology Biogeography Morphology Ecology and phylogenetics

Cyanea

Hawaiian LobeliadsWhat are the Hawaiian lobeliads?

Hawaiian LobeliadsThe Hawaiian lobeliads represent a single (not 5) lineage/colonization!

Givnish et al. 2009

Hawaiian LobeliadsThe Hawaiian lobeliads are an even more spectacular adaptive radiation

Hawaiian LobeliadsRemarkable divergent andconvergent character evolution- but fruit color is perfectlyconsistent with relationships

Page 14: Adaptive Radiations Ecology Biogeography Genetics ...courses.botany.wisc.edu/botany_400/Lecture/0pdf/33AdapRadBW.pdf · Cytology Ecology Biogeography Morphology Ecology and phylogenetics

Hawaiian LobeliadsTwo clock calibrations - usingAsterid fossils or usingHawaiian Island ages - place thedifferentiation of Hawaiianlobeliads at 12-13 mya

Hawaiian LobeliadsTwo clock calibrations - usingAsterid fossils or usingHawaiian Island ages - place thedifferentiation of Hawaiianlobeliads at 12-13 mya

Original colonist arrived inGardner Pinnacles - largevolcanic islands 12-13 mya

Lobeliads are one of the oldest radiations of extant Hawaiian biota – buttheir honeycreeper pollinators would not arrive for another 7-9 my (oh-oh!)

Hawaiian LobeliadsBut . . . a recent paper shows that the 5recently extinct Hawaiian Honeyeaters – andthought to be recently derived fromAustralAsian Honeyeaters – are in fact 14-17my old and derived from an American clade -waxwings, silky flycatchers, and palm chats

Hawaiian lobeliads13-14 mya

Hawaiian Honeycreepers7 mya

Fleischer et al. 2008

Hawaiian Lobeliads

Page 15: Adaptive Radiations Ecology Biogeography Genetics ...courses.botany.wisc.edu/botany_400/Lecture/0pdf/33AdapRadBW.pdf · Cytology Ecology Biogeography Morphology Ecology and phylogenetics

• Early lobeliads hadinitial radiation withHawaiian honeyeaters

• later radiation of twolarge genera (Cyanea andClermontia) pimarily withHawaiian honeycreepers

Hawaiian Lobeliads

Adaptive Radiations

. . . Systematics meets Ecology . . .