A method of data sharing in 20 07 PRIME project and a study o f its integration into NAREGI data grid environment UPDATE Eisaku Sakane <[email protected]> Cybermedia center Osaka University PRAGMA 14 Workshop March 11, 2008 National Museum of Natural Science, Taic hung
A method of data sharing in 2007 PRIME project and a study of its integration into NAREGI data grid environment UPDATE Eisaku Sakane Cybermedia center.
Mar 27, 2015
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A method of data sharing in 2007 PRIME project and a study of its integration into
NAREGI data grid environmentUPDATE
Eisaku Sakane <[email protected]>Cybermedia centerOsaka University
PRAGMA 14 WorkshopMarch 11, 2008
National Museum of Natural Science, Taichung
Research Objective of PRIME 2007
＋＋ Big Ultimate Objective:Big Ultimate Objective:+ build/visualize/mathematically analyze
3D cardiomyocyte (Heart Cell) model--> High Resolution
--> Finite Elements
--> Normal & Failing Hearts
--> Base on Realistic Anatomical Structures
Research Center for Ultra-High Voltage Electron
MicroscopyUHVEM - Osaka Univ.
Cardiac Mechanics Research GroupCMRG - UCSD
National Center for Microscopy
and Imaging ResearchNCMIR - UCSD
Cybermedia CenterCMC - Osaka University
*Acknowledgement: Young Chun, UCSD
National Center for Microscopy and Imaging Research
UHVEM
Storage
Cybermedia Center
IMOD (X11 client)
data
data
data
Overall UHVEM - CMC - NCMIR
Data flow
WebDAV
CCD cameracontroller
SCP/SFTP
Cell Centered Databasedata
Research Center for Ultra-High Voltage Electron Microscopy
X11 server
National Center for Microscopy and Imaging Research
UHVEM
Gfarm-VO
Cybermedia Center
IMOD
data
data
Integration into NAREGI data grid
WebDAV
CCD cameracontroller
SCP/gfreg (gfarm)
Cell Centered Databasedata
Research Center for Ultra-High Voltage Electron Microscopy
NAREGI Portal
SS/IS
GridVMsdata
Tomographic/3Dreconstruction
Virtual Organization
``Data provider’’
VOMS
Gfarm-VOGfarm client
proxy cert. with VO attributes
VO name
VO1 VO3
VO2
Auto selection
VO name
Select suitable spool dir.
gfsd
gfsd
gfsd
RP provides storages for VO1 and VO2.
Current Status
• We are building an experimental system for NAREGI data grid at CMC:– Based on NAREGI M/W β2– Gfarm-VO– VOMS
• A VO composed of UHVEM, NICMIR, CMC
– Design a function of importing data into Gfarm filesystem automatically
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