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Carbohydrates (sugars) are abundant in nature: They are high energy biomolecules. They provide structural rigidity for organisms (plants, crustaceans, etc.). The polymer backbone on which DNA and RNA are assembled contains sugars. The term, carbohydrate, evolved to describe the formula for such molecules: C x (H 2 O) x . Carbohydrates are NOT true hydrates. WHY? 24.1 Introduction to Carbohydrates Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-1
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24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

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Page 1: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Carbohydrates (sugars) are abundant in nature:

– They are high energy biomolecules.

– They provide structural rigidity for organisms (plants, crustaceans, etc.).

– The polymer backbone on which DNA and RNA are assembled contains sugars.

• The term, carbohydrate, evolved to describe the formula for such molecules: Cx(H2O)x.

• Carbohydrates are NOT true hydrates. WHY?

24.1 Introduction to Carbohydrates

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-1

Page 2: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Carbohydrates (sugars) are polyhydroxy aldehydes or ketones.

– Consider glucose, which is made by plants:

– Describe the potential energy change that occurs during glucose photosynthesis.

– Is glucose a polyhydroxy aldehyde or ketone?

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-2

Page 3: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Saccharides have multiple chiral centers, and they are often drawn as Fischer projections.

– Designate each chirality center in glucose as either R or S.

24.2 Classification of Monosaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-3

Page 4: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Saccharides have multiple chiral centers, and they are often drawn as Fischer projections.

• What does the suffix, “ose” mean?

• Define the following terms:

– Aldose and ketose

– Pentose and hexose

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-4

Page 5: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Glyceraldehyde is a monosaccharide with one chirality center.

– Natural glyceraldehyde is dextrorotatory (D): it rotates plane polarized light in the clockwise direction.

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-5

Page 6: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Naturally occurring larger sugars can be broken down into glyceraldehyde by degradation.

• Such sugars are often called D-sugars.

24.2 Classification of Monosaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-6

Page 7: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Recall that dextrorotatory versus levorotatory rotation cannot be predicted by the R or S configuration.

• Here, D no longer refers to dextrorotatory. Rather it refers to the R configuration at the chiral carbon farthest from the carbonyl.

24.2 Classification of Monosaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-7

Page 8: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• There are four aldotetroses. Two are shown below.

• What are the other two structures?

24.3 Configuration of Aldoses

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-8

Page 9: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Aldopentoses have three chirality centers. The number of isomers will be 23.

• Recall the 2n rule from Section 5.5.

• The D-sugars are naturally occurring.

24.3 Configuration of Aldoses

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-9

Page 10: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Ribose is a key building block of RNA.

– WHAT is RNA? More detail to come in Section 24.10.

• Arabinose is found in plants.

• Xylose is found in wood.

24.3 Configuration of Aldoses

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-10

Page 11: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Based on the 2n rule, how many aldohexoses are there?

• How many of the aldohexoses are D isomers.

• Glucose is the most common aldohexose.

• Mannose and galactose are also common.

24.3 Configuration of Aldoses

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-11

Page 12: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Relevant ketoses have between three and six carbons.

• For each naturally occurring D isomer, there is an L enantiomer.

24.4 Configuration of Ketoses

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-12

Page 13: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

24.4 Configuration of Ketoses

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-13

Page 14: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Recall from Section 20.5 that carbonyls can be attacked by alcohols to form hemiacetals.

– The intramolecular reaction is generally favored for 5 and 6-membered rings. WHY?

24.5 Cyclic Structures of Monosaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-14

Page 15: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• For the following compound, draw the mechanism and resulting product that results from acid catalyzed ring-closing hemiacetal formation.

24.5 Cyclic Structures of Monosaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-15

Page 16: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Monosaccharides, like glucose, can also undergo ring-closing hemiacetal formation.

• The equilibrium greatly favors the closed form called pyranose.

24.5 Cyclic Structures of Monosaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-16

Page 17: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-17

Page 18: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Distinguish between the α and β anomers.

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-18

Page 19: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

Anomeric effect

• Which would you predict to be more stable?

– Beta 67% , alpha 33%, open 0.01%

19

Page 20: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Ketoses form both furanose (5-membered) and pyranose (6-membered) rings:

24.5 Cyclic Structures of Monosaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-24

Page 21: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

24.5 Cyclic Structures of Monosaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-25

70% β 0.7% 23%-β

2% α 5%-α

• The equilibrium concentrations in water are above.

Page 22: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• The furanose form takes part in most biochemical reactions.

24.5 Cyclic Structures of Monosaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-26

Page 23: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Monosaccharides are generally soluble in water. WHY?

• To improve their solubility in organic solvents, the hydroxyl groups can be acetylated.

• WHY is pyridine added to the reaction?

• How might acetylation help in purification efforts.

24.6 Reactions of Monosaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-27

Page 24: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Monosaccharides can also be converted to ethers via the Williamson ether synthesis.

• Ether linkages are more robust than ester linkages. WHY?

24.6 Reactions of Monosaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-28

Page 25: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• When treated with an excess of an alcohol, the hemiacetal equilibrium can be shifted to give an acetal.

• When a sugar is used, alpha and beta glycosides are formed.

24.6 Reactions of Monosaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-29

Page 26: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

Copyright 2012 John Wiley & Sons, Inc.

• The mechanism of glycoside formation is analogous to the acetal formation mechanism.

• Only the anomeric hydroxyl group is replaced.

24.6 Reactions of Monosaccharides

Klein, Organic Chemistry 1e 24-30

Page 27: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• The mechanism of glycoside formation is analogous to the acetal formation mechanism.

• What factors would you consider when trying to predict whether the alpha or beta anomer will be the major product?

• Practice with CONCEPTUAL CHECKPOINTs 24.28 and 24.29.

24.6 Reactions of Monosaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-31

Page 28: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Under strongly basic conditions, glucose and mannose interconvert.

• Mannose and glucose are epimers because they only differ in the configuration of one carbon center.

• Practice with CONCEPTUAL CHECKPOINT 24.30.

24.6 Reactions of Monosaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-32

Page 29: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Monosaccharides can be reduced to ALDITOLs shifting the equilibrium to the right. HOW?

– D-sorbitol or D-glucitol are sugar substitutes.

24.6 Reactions of Monosaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-33

Page 30: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• If the sugar has an –OH attached to the anomeric carbon, then the sugar is a reducing sugar

• If it has –OR, then it is not a reducing sugar

Reducing sugars

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24 -34

Page 31: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Practice with SKILLBUILDER 24.4.

24.6 Reactions of Monosaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-37

Page 32: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Disaccharides form when two sugars connect through a glycosidic linkage.

– The 1 4 glycosidic linkage is most common.

– The bottom ring is capable of mutarotation at its anomeric position.

– Because the anomeric position of the bottom ring is a HEMIACETAL rather than an acetal, it is in equilibrium with the open form. Thus, maltose is a reducing sugar.

24.7 Disaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-42

Page 33: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Cellobiose is similar to maltose. WHAT are the differences?

• Will cellobiose be a reducing sugar?

24.7 Disaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-43

Page 34: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Lactose is another disaccharide.

• Some people have trouble digesting lactose.

24.7 Disaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-44

Page 35: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Sucrose (table sugar) is also a disaccharide.

– Honey bees can convert sucrose into a mixture of sucrose, fructose, and glucose.

– Fructose is very sweet.

• Sucrose is not a reducing sugar. WHY?

24.7 Disaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-45

Page 36: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Cellulose is a polysaccharide containing 7000–12000 glucose units connected through glycosidic bonds.

• How is cellulose capable of giving plants like trees their rigidity and strength?

24.8 Polysaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-46

Page 37: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Starch is a major components of grains and other foods, like potatoes.

• What is the difference between molecules of starch and molecules of cellulose?

• Starch is made of amylose and amylopectin.

24.8 Polysaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-47

Page 38: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Amylopectin has some 16-α-glycoside branches.

• We can eat corn and potatoes, but not grass or trees. WHY?

24.8 Polysaccharides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-48

Page 39: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Amino sugars like glucosamine are important biomolecules.

• Acetylated glucosamine can form an

important polysaccharide called chitin.

24.9 Amino Sugars

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-49

Page 40: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• The carbonyl groups in chitin allow for even stronger H-bonding between neighboring chains.

• Chitin is used in insect and arthropod exoskeletons. WHY?

24.9 Amino Sugars

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-50

Page 41: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• N-glycosides can be formed when sugars are treated with an amine and an acid catalyst.

• RNA and DNA incorporate important N-glycosides called nucleosides.

24.10 N-Glycosides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-51

Page 42: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• Ribose forms ribonucleosides in RNA.

• Deoxyribose forms deoxyribonucleosides in DNA.

24.10 N-Glycosides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-52

Page 43: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• There are four different heterocyclic amines that attach to deoxyribose molecules to form DNA nucleosides.

24.10 N-Glycosides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-53

Page 44: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• In DNA, the nucleosides are attached to phosphate groups forming nucleotides.

24.10 N-Glycosides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-54

Page 45: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• The phosphate groups of the nucleotides are connected together to make the DNA strand or POLYNUCLEOTIDE.

24.10 N-Glycosides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-55

Page 46: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• The nucleotides in DNA can attract one another through H-bonding of the DNA base pairs.

24.10 N-Glycosides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-56

Page 47: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• WHY does DNA form a double helix?

24.10 N-Glycosides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-57

Page 48: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• RNA is structurally different from DNA :

– The sugar in RNA is ribose. WHAT is the sugar in DNA?

– RNA contains uracil instead of thymine.

• RNA translates the information stored in DNA into working molecules (proteins and enzymes).

24.10 N-Glycosides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-58

Page 49: 24.1 Introduction to Carbohydrates - · PDF file•Carbohydrates are NOT true hydrates. WHY? ... at the chiral carbon farthest from the carbonyl. ... •The equilibrium greatly favors

• RNA strands generally do not form double helices like DNA.

• RNA strands can fold into many different shapes, and some even act as catalysts called ribozymes.

• It is possible that RNA evolved self-replication as an early step in the evolution of life from small molecules.

24.10 N-Glycosides

Copyright 2012 John Wiley & Sons, Inc. Klein, Organic Chemistry 1e 24-59