1 Running Head: DEL1 affects rice growth and leaf senescence 2 · 4/28/2017 · 97 accumulation of reactive oxygen species. The DEL1 gene was cloned using a 98 map-based approach.
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1
Running Head: DEL1 affects rice growth and leaf senescence 1
2
Corresponding authors: 3
Dali Zeng 4
State Key Lab for Rice Biology, China National Rice Research Institute, Hangzhou 5
Supplemental Table 4. Differentially expressed of cell wall and senescence related 875
genes in del1 plants. 876
Supplemental Table 5. Primers used for PCR in this study. 877
878
LITERATURE CITED 879
Anderson CT, Carroll A, Akhmetova L, Somerville C (2010) Real-time imaging of cellulose 880 reorientation during cell wall expansion in Arabidopsis roots. Plant Physiol 152: 881 787-796 882
Apel K, Hirt H (2004) Reactive oxygen species: metabolism, oxidative stress, and signal 883 transduction. Annu Rev Plant Biol 55: 728-749 884
Atmodjo MA, Hao Z, Mohnen D (2013) Evolving views of pectin biosynthesis. Annu Rev 885 Plant Biol 64: 747-779 886
Barras F, Gijsegem FV, Chatterjee AK (1994) Extracellular enzymes and pathogenesis of 887 soft-rot Erwinia. Annu Rev Phytopathol 32: 201-234 888
Biswal AK, Soeno K, Gandla ML, Immerzeel P, Pattathil S, Lucenius J, Serimaa R, Hahn 889 MG, Moritz T, Jonsson LJ, et al (2014) Aspen pectate lyase PtxtPL1-27 mobilizes 890 matrix polysaccharides from woody tissues and improves saccharification yield. 891 Biotechnol Biofuels 7: 1-13 892
Blum A, Ebercon A (1981) Cell membrane stability as a measure of drought and heat tolerance 893 in wheat. Crop Sci 21: 43-47 894
Blumenkrantz N, Asboe-Hansen G (1973) New method for quantitative determination of 895 uronic acids. Anal Biochem 54: 484-489 896
Bonnin E, Garnier C, Ralet MC (2014) Pectin-modifying enzymes and pectin-derived 897 materials: applications and impacts. Appl Microbiol Biot 98: 519-532 898
Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities 899 of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254 900
Brummell DA (2006) Cell wall disassembly in ripening fruit. Funct Plant Biol 33: 103-119 901 Collmer A, Ried JL, Mount MS (1988) Assay methods for pectic enzymes. In: Wood WA, 902
Kellogg ST, eds. Methods Enzymol. San Diego, UAS: Academic Press, 329-335 903 Cosgrove DJ (2005) Growth of the plant cell wall. Nat Rev Mol Cell Bio 6: 850-861 904 Cote F, Ham KS, Hahn MG, Bergmann CW (1998) Oligosaccharide elicitors in host-pathogen 905
interactions. generation, perception, and signal transduction. Subcellular Biochemistry 906 29, 385-432 907
Dewitte W, Murray JAH (2003) The plant cell cycle. Annu Rev Plant Biol 54: 235-264 908 Dick-Perez M, Zhang Y, Hayes J, Salazar A, Zabotina OA, Hong M (2011) Structure and 909
interactions of plant cell-wall polysaccharides by two- and three-dimensional 910 magic-angle-spinning solid-state NMR. Biochemistry 50: 989-1000 911
Domingo C, Roberts K, Stacey NJ, Connerton I, Ruiz-Teran F, Mccann MC (1998) A 912 pectate lyase from Zinnia elegans is auxin inducible. Plant J 13: 17-28 913
Dominguez-Puigjaner E, Llop I, Vendrell M, Prat S (1997) A cDNA clone highly expressed in 914 ripe banana fruit shows homology to pectate lyases. Plant Physiol 114: 1071-1076 915
Duan YL, Li SP, Chen ZW, Zheng LL, Diao ZJ, Zhou YC, Lan T, Guan HZ, Pan RS, Xue Y, 916
et al (2012) Dwarf and deformed flower 1, encoding an F-box protein, is critical for 917 vegetative and floral development in rice (Oryza sativa L.). Plant J 72: 829-842 918
Fang CY, Zhang H, Wan J, Wu YY, Li K, Jin C, Chen W, Wang SC, Wang WS, Zhang HW, 919 et al (2016) Control of leaf senescence by an MeOH-Jasmonates cascade that is 920 epigenetically regulated by OsSRT1 in Rice. Mol Plant 9: 1366-1378 921
Ferrari S, Savatin DV, Sicilia F, Gramegna G, Cervone F, Lorenzo GD (2013) 922 Oligogalacturonides: plant damage-associated molecular patterns and regulators of 923 growth and development. Front Plant Sci 4: 30-38 924
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Guo LB, Chu CC, Qian Q (2006) Rice mutants and functional genomics. Chinese Bull Bot. 928 23:1-13 929
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Hongo S, Sato K, Yokoyama R, Nishitani K (2012) Demethylesterification of the primary wall 936 by PECTIN METHYLESTERASE35 provides mechanical support to the Arabidopsis 937 stem. Plant Cell 24: 2624-2634 938
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Iwai H, Masaoka N, Ishii T, Satoh S (2002) A pectin glucuronyltransferase gene is essential for 944 intercellular attachment in the plant meristem. Proc Natl Acad Sci USA 99: 945 16319-16324 946
Khanna-Chopra R (2012) Leaf senescence and abiotic stresses share reactive oxygen 947 species-mediated chloroplast degradation. Protoplasma 249: 469-481 948
Kim SH, Choi HS, Cho YC, Kim SR (2012) Cold-responsive regulation of a 949 Flower-Preferential Class III Peroxidase Gene, OsPOX1, in rice (Oryza sativa L.). J 950 Plant Biol 55: 123-131 951
Koch E, Slusarenko A (1990) Arabidopsis is susceptible to infection by a downy mildew fungus. 952 Plant Cell 2: 437-445 953
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Apel K, Hirt H (2004) Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu Rev Plant Biol 55: 728-749
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Atmodjo MA, Hao Z, Mohnen D (2013) Evolving views of pectin biosynthesis. Annu Rev Plant Biol 64: 747-779Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Barras F, Gijsegem FV, Chatterjee AK (1994) Extracellular enzymes and pathogenesis of soft-rot Erwinia. Annu Rev Phytopathol 32:201-234
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Biswal AK, Soeno K, Gandla ML, Immerzeel P, Pattathil S, Lucenius J, Serimaa R, Hahn MG, Moritz T, Jonsson LJ, et al (2014)Aspen pectate lyase PtxtPL1-27 mobilizes matrix polysaccharides from woody tissues and improves saccharification yield.Biotechnol Biofuels 7: 1-13
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Blum A, Ebercon A (1981) Cell membrane stability as a measure of drought and heat tolerance in wheat. Crop Sci 21: 43-47Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Blumenkrantz N, Asboe-Hansen G (1973) New method for quantitative determination of uronic acids. Anal Biochem 54: 484-489Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Bonnin E, Garnier C, Ralet MC (2014) Pectin-modifying enzymes and pectin-derived materials: applications and impacts. ApplMicrobiol Biot 98: 519-532
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle ofprotein-dye binding. Anal Biochem 72: 248-254
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Brummell DA (2006) Cell wall disassembly in ripening fruit. Funct Plant Biol 33: 103-119Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Collmer A, Ried JL, Mount MS (1988) Assay methods for pectic enzymes. In: Wood WA, Kellogg ST, eds. Methods Enzymol. SanDiego, UAS: Academic Press, 329-335
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Cosgrove DJ (2005) Growth of the plant cell wall. Nat Rev Mol Cell Bio 6: 850-861Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Cote F, Ham KS, Hahn MG, Bergmann CW (1998) Oligosaccharide elicitors in host-pathogen interactions. generation, perception,and signal transduction. Subcellular Biochemistry 29, 385-432
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Dewitte W, Murray JAH (2003) The plant cell cycle. Annu Rev Plant Biol 54: 235-264Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title www.plantphysiol.orgon October 7, 2020 - Published by Downloaded from
Dick-Perez M, Zhang Y, Hayes J, Salazar A, Zabotina OA, Hong M (2011) Structure and interactions of plant cell-wallpolysaccharides by two- and three-dimensional magic-angle-spinning solid-state NMR. Biochemistry 50: 989-1000
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Domingo C, Roberts K, Stacey NJ, Connerton I, Ruiz-Teran F, Mccann MC (1998) A pectate lyase from Zinnia elegans is auxininducible. Plant J 13: 17-28
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Dominguez-Puigjaner E, Llop I, Vendrell M, Prat S (1997) A cDNA clone highly expressed in ripe banana fruit shows homology topectate lyases. Plant Physiol 114: 1071-1076
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Duan YL, Li SP, Chen ZW, Zheng LL, Diao ZJ, Zhou YC, Lan T, Guan HZ, Pan RS, Xue Y, et al (2012) Dwarf and deformed flower 1,encoding an F-box protein, is critical for vegetative and floral development in rice (Oryza sativa L.). Plant J 72: 829-842
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Fang CY, Zhang H, Wan J, Wu YY, Li K, Jin C, Chen W, Wang SC, Wang WS, Zhang HW, et al (2016) Control of leaf senescence by anMeOH-Jasmonates cascade that is epigenetically regulated by OsSRT1 in Rice. Mol Plant 9: 1366-1378
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Ferrari S, Savatin DV, Sicilia F, Gramegna G, Cervone F, Lorenzo GD (2013) Oligogalacturonides: plant damage-associatedmolecular patterns and regulators of growth and development. Front Plant Sci 4: 30-38
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Galbraith DW, Harkins KR, Maddox JM, Ayres NM, Sharma DP, Firoozabady E (1983) Rapid flow cytometric analysis of the cell cyclein intact plant tissues. Science 220: 1049-1051
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Guo LB, Chu CC, Qian Q (2006) Rice mutants and functional genomics. Chinese Bull Bot. 23:1-13Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Held MA, Be E, Zemelis S, Withers S, Wilkerson C, Brandizzi F (2011) CGR3: a golgi-localized protein influencinghomogalacturonan methylesterification. Mol Plant 4: 832-844
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Hiei Y, Ohta S, Komari T, Kumashiro T (1994) Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium andsequence analysis of the boundaries of the T-DNA. Plant J 6: 271-282
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Hongo S, Sato K, Yokoyama R, Nishitani K (2012) Demethylesterification of the primary wall by PECTIN METHYLESTERASE35provides mechanical support to the Arabidopsis stem. Plant Cell 24: 2624-2634
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Huang DW, Sherman BT, Lempicki RA (2008) Systematic and integrative analysis of large gene lists using DAVID bioinformaticsresources. Nat Protoc 4: 44-57
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Huang LM, Sun QW, Qin FJ, Li C, Zhao Y, Zhou DX (2007) Down-regulation of a SILENT INFORMATION REGULATOR2-relatedhistone deacetylase gene, OsSRT1, induces DNA fragmentation and cell death in rice. Plant Physiol 144: 1508-1519
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Iwai H, Masaoka N, Ishii T, Satoh S (2002) A pectin glucuronyltransferase gene is essential for intercellular attachment in the plantmeristem. Proc Natl Acad Sci USA 99: 16319-16324
CrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Khanna-Chopra R (2012) Leaf senescence and abiotic stresses share reactive oxygen species-mediated chloroplast degradation.Protoplasma 249: 469-481
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Kim SH, Choi HS, Cho YC, Kim SR (2012) Cold-responsive regulation of a Flower-Preferential Class III Peroxidase Gene, OsPOX1,in rice (Oryza sativa L.). J Plant Biol 55: 123-131
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Koch E, Slusarenko A (1990) Arabidopsis is susceptible to infection by a downy mildew fungus. Plant Cell 2: 437-445Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Krizek BA (2009) Making bigger plants: key regulators of final organ size. Curr Opin Plant Biol 12: 17-22Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Kulikauskas R, McCormick S (1997) Identification of tobacco and Arabidopsis homologues of the pollen-expressed Lat59 gene oftomato. Plant Mol Biol 34: 809-814
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Laskowski M, Biller S, Stanley K, Kajstura T, Prusty R (2006) Expression profiling of auxin-treated Arabidopsis roots: toward amolecular analysis of lateral root emergence. Plant Cell Physiol 47: 788-792
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Lim PO, Kim HJ, Nam HG (2007) Leaf Senescence. Annu Rev Plant Biol 58: 115-136Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
McQueen-Mason SJ, Cosgrove DJ (1995) Expansin mode of action on cell walls. Analysis of wall hydrolysis, stress relaxation, andbinding. Plant Physiol 107: 87-100
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Medina-Escobar N, Cardenas J, Moyano E, Caballero JL, Munoz-Blanco J (1997) Cloning, molecular characterization andexpression pattern of a strawberry ripening-specific cDNA with sequence homology to pectate lyase from higher plants. Plant MolBiol 34: 867-877
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Milioni D, Sado PE, Stacey NJ, Domingo C, Roberts K, Mccann MC (2001) Differential expression of cell-wall-related genes duringthe formation of tracheary elements in the Zinnia mesophyll cell system. Plant Mol Biol 47: 221-238
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Miller G, Suzuki N, Ciftci-Yilmaz S, Mittler R (2010) Reactive oxygen species homeostasis and signalling during drought andsalinity stresses. Plant Cell Environ 33: 453-467
Pubmed: Author and TitleCrossRef: Author and TitleGoogle Scholar: Author Only Title Only Author and Title
Nooden LD, Leopold AC (1978) Phytohormones and the endogenous regulation of senescence and abscission. In: Letham DS,Goodwin PB, Higgins TJV, eds. Phytohormones and related compounds: a comprehensive treatise. Amsterdam, Netherlands:Elsevier/NorthHolland Biomedical Press, 329-369.
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