1 Information Extraction (Slides based on those by Ray Mooney, Craig Knoblock, Dan Weld and Perry)

1

Information Extraction

(Slides based on those by Ray Mooney, Craig Knoblock, Dan Weld

and Perry)

2

Information Extraction (IE)

• Identify specific pieces of information (data) in a unstructured or semi-structured textual document.

• Transform unstructured information in a corpus of documents or web pages into a structured database.

• Applied to different types of text:– Newspaper articles– Web pages– Scientific articles– Newsgroup messages– Classified ads– Medical notes

3

MUC

• DARPA funded significant efforts in IE in the early to mid 1990’s.

• Message Understanding Conference (MUC) was an annual event/competition where results were presented.

• Focused on extracting information from news articles:– Terrorist events– Industrial joint ventures– Company management changes

• Information extraction of particular interest to the intelligence community (CIA, NSA).

4

Other Applications

• Job postings:– Newsgroups: Rapier from austin.jobs– Web pages: Flipdog

• Job resumes: – BurningGlass– Mohomine

• Seminar announcements• Company information from the web• Continuing education course info from the web• University information from the web• Apartment rental ads• Molecular biology information from MEDLINE

http://www.cs.utexas.edu/users/ml/jobquery/jobfinder.cgi

http://www.flipdog.com/

http://www.burningglass.com/

http://www.mohomine.com/

5

Subject: US-TN-SOFTWARE PROGRAMMERDate: 17 Nov 1996 17:37:29 GMTOrganization: Reference.Com Posting ServiceMessage-ID: <[email protected]>

SOFTWARE PROGRAMMER

Position available for Software Programmer experienced in generating software for PC-Based Voice Mail systems. Experienced in C Programming. Must be familiar with communicating with and controlling voice cards; preferable Dialogic, however, experience with others such as Rhetorix and Natural Microsystems is okay. Prefer 5 years or more experience with PC Based Voice Mail, but will consider as little as 2 years. Need to find a Senior level person who can come on board and pick up code with very little training. Present Operating System is DOS. May go to OS-2 or UNIX in future.

Please reply to:Kim AndersonAdNET(901) 458-2888 [email protected]

Subject: US-TN-SOFTWARE PROGRAMMERDate: 17 Nov 1996 17:37:29 GMTOrganization: Reference.Com Posting ServiceMessage-ID: <[email protected]>

SOFTWARE PROGRAMMER

Position available for Software Programmer experienced in generating software for PC-Based Voice Mail systems. Experienced in C Programming. Must be familiar with communicating with and controlling voice cards; preferable Dialogic, however, experience with others such as Rhetorix and Natural Microsystems is okay. Prefer 5 years or more experience with PC Based Voice Mail, but will consider as little as 2 years. Need to find a Senior level person who can come on board and pick up code with very little training. Present Operating System is DOS. May go to OS-2 or UNIX in future.

Please reply to:Kim AndersonAdNET(901) 458-2888 [email protected]

Sample Job Posting

6

Extracted Job Template

computer_science_jobid: [email protected]: SOFTWARE PROGRAMMERsalary:company:recruiter:state: TNcity:country: USlanguage: Cplatform: PC \ DOS \ OS-2 \ UNIXapplication:area: Voice Mailreq_years_experience: 2desired_years_experience: 5req_degree:desired_degree:post_date: 17 Nov 1996

7

Amazon Book Description

….</td></tr></table>The Age of Spiritual Machines : When Computers Exceed Human Intelligence by <a href="/exec/obidos/search-handle-url/index=books&field-author= Kurzweil%2C%20Ray/002-6235079-4593641">Ray Kurzweil</a> <a href="http://images.amazon.com/images/P/0140282025.01.LZZZZZZZ.jpg"><img src="http://images.amazon.com/images/P/0140282025.01.MZZZZZZZ.gif" width=90 height=140 align=left border=0></a>List Price: $14.95 Our Price: $11.96 You Save: $2.99 (20%) 

….</td></tr></table>The Age of Spiritual Machines : When Computers Exceed Human Intelligence by <a href="/exec/obidos/search-handle-url/index=books&field-author= Kurzweil%2C%20Ray/002-6235079-4593641">Ray Kurzweil</a> <a href="http://images.amazon.com/images/P/0140282025.01.LZZZZZZZ.jpg"><img src="http://images.amazon.com/images/P/0140282025.01.MZZZZZZZ.gif" width=90 height=140 align=left border=0></a>List Price: $14.95 Our Price: $11.96 You Save: $2.99 (20%) …

8

Extracted Book Template

Title: The Age of Spiritual Machines : When Computers Exceed Human IntelligenceAuthor: Ray KurzweilList-Price: $14.95Price: $11.96::

9

Web Extraction

• Many web pages are generated automatically from an underlying database.

• Therefore, the HTML structure of pages is fairly specific and regular (semi-structured).

• However, output is intended for human consumption, not machine interpretation.

• An IE system for such generated pages allows the web site to be viewed as a structured database.

• An extractor for a semi-structured web site is sometimes referred to as a wrapper.

• Process of extracting from such pages is sometimes referred to as screen scraping.

10

Web Extraction using DOM Trees

• Web extraction may be aided by first parsing web pages into DOM trees.

• Extraction patterns can then be specified as paths from the root of the DOM tree to the node containing the text to extract.

• May still need regex patterns to identify proper portion of the final CharacterData node.

11

Sample DOM Tree Extraction

HTML

BODY

FONTB

Age of Spiritual Machines

Ray Kurzweil

Element

Character-DataHEADER

by A

Title: HTMLBODYBCharacterDataAuthor: HTML BODYFONTA CharacterData

12

Template Types

• Slots in template typically filled by a substring from the document.

• Some slots may have a fixed set of pre-specified possible fillers that may not occur in the text itself.– Terrorist act: threatened, attempted, accomplished.

– Job type: clerical, service, custodial, etc.

– Company type: SEC code

• Some slots may allow multiple fillers.– Programming language

• Some domains may allow multiple extracted templates per document.– Multiple apartment listings in one ad

13

Simple Extraction Patterns

• Specify an item to extract for a slot using a regular expression pattern.– Price pattern: “\b\$\d+(\.\d{2})?\b”

• May require preceding (pre-filler) pattern to identify proper context.– Amazon list price:

• Pre-filler pattern: “List Price: ”• Filler pattern: “\$\d+(\.\d{2})?\b”

• May require succeeding (post-filler) pattern to identify the end of the filler.– Amazon list price:

• Pre-filler pattern: “List Price: ”• Filler pattern: “.+”• Post-filler pattern: “”

14

Simple Template Extraction

• Extract slots in order, starting the search for the filler of the n+1 slot where the filler for the nth slot ended. Assumes slots always in a fixed order. – Title

– Author

– List price

– …

• Make patterns specific enough to identify each filler always starting from the beginning of the document.

15

Pre-Specified Filler Extraction

• If a slot has a fixed set of pre-specified possible fillers, text categorization can be used to fill the slot.– Job category– Company type

• Treat each of the possible values of the slot as a category, and classify the entire document to determine the correct filler.

16

Learning for IE

• Writing accurate patterns for each slot for each domain (e.g. each web site) requires laborious software engineering.

• Alternative is to use machine learning:– Build a training set of documents paired with human-produced

filled extraction templates.– Learn extraction patterns for each slot using an appropriate

machine learning algorithm.

18

19

20

21

22

23

24

254th Nov, 2002.

Happy Deepawali!& Haloween

10/31

Finding“Sweet Spots” in computer-mediated cooperative work

• It is possible to get by with techniques blythely ignorant of semantics, when you have humans in the loop– All you need is to find the right sweet spot, where the

computer plays a pre-processing role and presents “potential solutions”

– …and the human very gratefully does the in-depth analysis on those few potential solutions

• Examples:– The incredible success of “Bag of Words” model!

• Bag of letters would be a disaster ;-)• Bag of sentences and/or NLP would be good

– ..but only to your discriminating and irascible searchers ;-)

Collaborative Computing AKA Brain Cycle Stealing

AKA Computizing Eyeballs

• A lot of exciting research related to web currently involves “co-opting” the masses to help with large-scale tasks– It is like “cycle stealing”—except we are stealing “human brain

cycles” (the most idle of the computers if there is ever one ;-) • Remember the mice in the Hitch Hikers Guide to the Galaxy?

(..who were running a mass-scale experiment on the humans to figure out the question..)

– Collaborative knowledge compilation (wikipedia!)– Collaborative Curation – Collaborative tagging– Paid collacoration/contracting

• Many big open issues– How do you pose the problem such that it can be solved using

collaborative computing?– How do you “incentivize” people into letting you steal their brain

cycles? • Pay them! (Amazon mturk.com )

Tapping into the Collective Unconscious

• Another thread of exciting research is driven by the realization that WEB is not random at all!– It is written by humans

– …so analyzing its structure and content allows us to tap into the collective unconscious ..

• Meaning can emerge from syntactic notions such as “co-occurrences” and “connectedness”

• Examples:– Analyzing term co-occurrences in the web-scale corpora to capture

semantic information (today’s paper)

– Analyzing the link-structure of the web graph to discover communities• DoD and NSA are very much into this as a way of breaking terrorist cells

– Analyzing the transaction patterns of customers (collaborative filtering)

http://images.google.com/imgres?imgurl=http://journeyintowholeness.org/img/jung_color_vert.jpg&imgrefurl=http://journeyintowholeness.org/jung101/index.shtm&h=278&w=188&sz=23&tbnid=ZJ6McZJZefMJ:&tbnh=109&tbnw=73&hl=en&start=1&prev=/images%3Fq%3Dcarl%2Bjung%26svnum%3D10%26hl%3Den%26lr%3D%26c2coff%3D1%26rls%3DGGLC,GGLC:1969-53,GGLC:en%26sa%3DN

30

Automated Support for “Semantic Web”

• Semantic web needs:– Tagged data– Background knowledge

• (blue sky approaches to) automate both– Automated tagging

• Start with a background ontology and tag other web pages

– Semtag/Seeker

– Knowledge Extraction• Extract base level knowledge (“facts”) directly from

the web

31

Extraction from Free Text involvesNatural Language Processing

• If extracting from automatically generated web pages, simple regex patterns usually work.

• If extracting from more natural, unstructured, human-written text, some NLP may help.– Part-of-speech (POS) tagging

• Mark each word as a noun, verb, preposition, etc.

– Syntactic parsing• Identify phrases: NP, VP, PP

– Semantic word categories (e.g. from WordNet)• KILL: kill, murder, assassinate, strangle, suffocate

• Off-the-shelf software available to do this!– The “Brill” tagger

• Extraction patterns can use POS or phrase tags.

32

I. Generate-n-Test Architecture

Generic extraction patterns (Hearst ’92):• “…Cities such as Boston, Los Angeles, and Seattle…”

(“C such as NP1, NP2, and NP3”) => IS-A(each(head(NP)), C), …

•Detailed information for several countries such as maps, …” ProperNoun(head(NP))

• “I listen to pretty much all music but prefer country such as Garth Brooks”

33

Test

|)(|

|)(|),(

SeattleHits

CitySeattleHitsCitySeattlePMI

Assess candidate extractions using Mutual Information (PMI-IR) (Turney ’01).

Many variations are possible…

34

Assessment

|)(|

|)(|),(

IHits

DIHitsDIPMI

•PMI = frequency of I & D co-occurrence•5-50 discriminators Di

•Each PMI for Di is a feature fi

•Naïve Bayes evidence combination:

i ii i

i i

n fPPfPP

fPPfffP

)|()()|()(

)|()(),...,|( 21

PMI is used for feature selection. NBC is used for learning. Hits used for assessing PMI as well as conditional probabilities

35

Assessment In Action

1. I = “Yakima” (1,340,000)

2. D = <class name>

3. I+D = “Yakima city” (2760)

4. PMI = (2760 / 1.34M)= 0.02

•I = “Avocado” (1,000,000)•I+D =“Avocado city” (10)

PMI = 0.00001 << 0.02

36

Some Sources of ambiguity

• Time: “Clinton is the president” (in 1996).

• Context: “common misconceptions..”

• Opinion: Elvis…

• Multiple word senses: Amazon, Chicago, Chevy Chase, etc.– Dominant senses can mask recessive ones!

– Approach: unmasking. ‘Chicago –City’

37

Chicago

City Movie

|)|(|

|)|(|),,(

CIHits

CDIHitsCDIPMI

38

Chicago Unmasked

City sense Movie sense

|)(|

|)(|

CityChicagoHits

CityMovieChicagoHits

39

Impact of Unmasking on PMI

Name Recessive Original Unmask BoostWashington city 0.50 0.99 96%Casablanca city 0.41 0.93 127%Chevy Chase actor 0.09 0.58 512%Chicago movie 0.02 0.21 972%

40

CBioC: Collaborative Bio-Curation

Motivation To help get information nuggets of articles and

abstracts and store in a database. The challenge is that the number of articles are

huge and they keep growing, and need to process natural language.

The two existing approaches human curation and use of automatic information

extraction systems They are not able to meet the challenge, as the first is

expensive, while the second is error-prone.

41

CBioC (cont’d)

Approach: We propose a solution that is inexpensive, and that scales up. Our approach takes advantage of automatic information

extraction methods as a starting point, Based on the premise that if there are a lot of articles, then

there must be a lot of readers and authors of these articles. We provide a mechanism by which the readers of the

articles can participate and collaborate in the curation of information.

We refer to our approach as “Collaborative Curation''.

42

Using the C-BioCurator System (cont’d)

Extractor Systems

DownloadAgent

TextDBExistingDB

Data Format Exchange System

BioPax

CBioCDatabase

Collaborative Bio-Curation System

CBioC Interface

Browse Facts

Vote FactsAdd/Modify New

FactsAdd New SchemaInvoke

IntExtractorUser

Management

DownloadAgent

DIP

Reactome

… …Nature

SciencePubmed

... ...

(a)

(b) (d)

(c)

What is the main difference between Knowitall and CBIOC?

Assessment– Knowitall does it by HITS. CBioC by voting

44

Annotation

“The Chicago Bulls announced yesterday that Michael Jordan will. . . ”

The <resource ref="http://tap.stanford.edu/

BasketballTeam_Bulls">Chicago Bulls</resource>

announced yesterday that <resource ref=

"http://tap.stanford.edu/AthleteJordan,_Michael">

Michael Jordan</resource> will...’’

45

Semantic Annotation

Picture from http://lsdis.cs.uga.edu/courses/SemWebFall2005/courseMaterials/CSCI8350-Metadata.ppt

This simplest task of meta-data extraction on NL is to establish “type” relation between entities in the NL resources and concepts in ontologies.

Name Entity Identification

46

Semantics

• Semantic Annotation - The content of annotation consists of some rich semantic information - Targeted not only at human reader of resources but also software agents - formal : metadata following structural standards informal : personal notes written in the margin while reading an article - explicit : carry sufficient information for interpretation tacit : many personal annotations (telegraphic and

incomplete)

http://www-scf.usc.edu/~csci586/slides/6

47

Uses of Annotation

http://www-scf.usc.edu/~csci586/slides/8

48

Objectives of Annotation

• Generate Metadata for existing information– e.g., author-tag in HTML– RDF descriptions to HTML– Content description to Multimedia files

• Employ metadata for– Improved search– Navigation– Presentation– Summarization of contents

http://www.aifb.uni-karlsruhe.de/WBS/sst/Teaching/Intelligente%20System%20im%20WWW%20SS%202000/10-Annotation.pdf

49

Annotation

Current practice of annotation for knowledge identification and extraction

is time consuming

needs annotation by experts

is complex

Reduce burden of text annotation for Knowledge

Managementwww.racai.ro/EUROLAN-2003/html/presentations/SheffieldWilksBrewsterDingli/Eurolan2003AlexieiDingli.ppt

SemTag & Seeker WWW-03 Best Paper Prize Seeded with TAP ontology (72k concepts)

And ~700 human judgments Crawled 264 million web pages Extracted 434 million semantic tags

Automatically disambiguated

52

SemTag

• Uses broad, shallow knowledge base

• TAP – lexical and taxonomic information about popular objects– Music– Movies– Sports– Etc.

53

SemTag

• Problem:– No write access to original document, so how

do you annotate?

• Solution:– Store annotations in a web-available

database

54

SemTag

• Semantic Label Bureau– Separate store of semantic annotation

information– HTTP server that can be queried for

annotation information– Example

• Find all semantic tags for a given document• Find all semantic tags for a particular object

55

SemTag

• Methodology

56

SemTag

• Three phases1. Spotting Pass:

– Tokenize the document– All instances plus 20 word window

2. Learning Pass:– Find corpus-wide distribution of terms at each internal

node of taxonomy– Based on a representative sample

3. Tagging Pass:– Scan windows to disambiguate each reference– Finally determined to be a TAP object

59

SemTag

• TBD methodology:– Each node in the taxonomy is associated with

a set of labels• Cats, Football, Cars all contain “jaguar”

– Each label in the text is stored with a window of 20 words – the context

– Each node has an associated similarity function mapping a context to a similarity

• Higher similarity more likely to contain a reference

60

SemTag

• Similarity:– Built a 200,000 word lexicon (200,100 most

common – 100 most common)– 200,000 dimensional vector space– Training: spots (label, context) and correct

node– Estimated the distribution of terms for nodes – Standard cosine similarity– TFIDF vectors (context vs. node)

62

SemTag

• Some internal nodes very popular:– Associate a measurement of how accurate

Sim is likely to be at a node– Also, how ambiguous the node is overall

(consistency of human judgment)

• TBD Algorithm: returns 1 or 0 to indicate whether a particular context c is on topic for a node v

• 82% accuracy on 434 million spots

64

Summary

• Information extraction can be motivated either as explicating more structure from the data or as an automated way to Semantic Web

• Extraction complexity depends on whether the text you have is “templated” or “free-form”– Extraction from templated text can be done by regular

expressions– Extraction from free form text requires NLP

• Can be done in terms of parts-of-speech-tagging

• “Annotation” involves connecting terms in a free form text to items in the background knowledge– It too can be automated

1 Information Extraction (Slides based on those by Ray Mooney, Craig Knoblock, Dan Weld and Perry)

Documents

software programmer

software programmer

unstructured information

pc based voice mail

web university information

extracting information

pc based voice mail

voice mail req