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1 DNA: The Genetic Material Chapter 14
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1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

Jan 17, 2016

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Page 1: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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DNA: The Genetic Material

Chapter 14

Page 2: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Outline

• Genetic Material Experiments• Chemical Nature of Nucleic Acids• Three-Dimensional Structure of DNA

– Watson and Crick• Replication

– Semi Conservative– Replication Process

• Eukaryotic DNA Replication• One-Gene/One-Polypeptide Hypothesis

Page 3: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Hammerling Experiment

• Hammerling Experiment– Cells of green alga (Acetabularia) were cut

into pieces and observed to see which were able to express hereditary information.

Discovered hereditary information is stored in the cell’s nucleus.

Page 4: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Transplantation Experiments

• Briggs and King (1952), and Steward (1958) conducted several experiments that conclusively determined each nucleus in a eukaryotic cell contains a full set of genetic instructions.

Page 5: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Transplantation Experiments

• Several experiments were required to conclusively determine which substance made up genes.

– Griffith experiment documented movement of genes from

one organism to another (transformation)movement of material can alter the

genetic makeup of the recipient cell

Page 6: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Avery and Hershey-Chase Experiments

• Avery experiment– removed almost all protein from bacteria,

and found no reduction in transforming activity

• Hershey-Chase– labeled DNA and protein with radioactive

isotope tracer determined hereditary information was

DNA, not protein

Page 7: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Page 8: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Hershey - Chase

Page 9: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Chemical Nature of Nucleic Acids

• DNA made up of nucleic acids– Each nucleotide is composed of a five

carbon sugar, a phosphate group, and an organic base.

nucleotides distinguished by the bases reaction between phosphate group of

one nucleotide and hydroxyl group of another is dehydration synthesis

phosphodiester bond

Page 10: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Chemical Nature of Nucleic Acids

• Purines - large bases– adenine and guanine

• Pyrimidines - small bases– cytosine and thymine

Chargaff’s ruleA = T and G = C

Page 11: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Nucleotides

Page 12: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Three-Dimensional Structure of DNA

• X-ray diffraction suggested DNA had helical shape with a 2 nanometer diameter.

– Watson and Crick deduced DNA is an inter-twined double helix.

complementary base-pairingpurines pairing with pyrimidines

constant 2 nanometer diameter antiparallel configuration

Page 13: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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DNA Double Helix

Page 14: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Semi-Conservative Replication

• Each chain in the helix is a complimentary mirror image of the other.

– double helix unzips and undergoes semi-conservative replication

each strand original duplex becomes one strand of another duplex

confirmed by Meselson-Stahl experiment

Page 15: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Meselson - Stahl

Page 16: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Replication Process

• Replication of DNA begins at one or more sites (replication origin).

– DNA polymerase III and other enzymes add nucleotides to the growing complementary DNA strands.

require a primer can only synthesize in one direction

endonucleasesexonucleases

Page 17: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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DNA Replication

Page 18: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Replication Process

• DNA polymerase cannot link the first nucleotides in a newly synthesized strand.

– RNA polymerase (primase) constructs an RNA primer.

• DNA polymerase adds nucleotides to 3’ end.– Leading strand replicates toward replication

fork.– Lagging strand elongates from replication

fork. Okazaki fragments

Page 19: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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DNA Synthesis

Page 20: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Replication Process

• DNA ligase attaches fragment to lagging strand.

– Because synthesis of the leading strand is continuous and the lagging strand is discontinuous, the overall replication of DNA is referred to as semi-discontinuous.

• DNA gyrase removes torsional strain introduced by opening double helix.

Page 21: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Replication Process

• Opening DNA double helix– initiating replication– unwinding duplex– stabilizing single strands– relieving torque

• Building a primer• Assembling complementary strands• Removing the primer• Joining Okazaki fragments

Page 22: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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DNA Replication Fork

Page 23: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Replisome

• Replisome is a macromolecular protein machine (replication organelle).

– fast, accurate replication of DNA during cell division

Page 24: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Stages of Replication

• Initiation– always occurs at the same site

• Elongation– majority of replication spent in elongation

• Termination– exact details unclear

Page 25: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Eukaryotic DNA Replication

• Eukaryotes usually have multiple, large chromosomes.

– multiple origins of replication

Page 26: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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One-Gene/One-Polypeptide Hypothesis

• Genes produce their effects by specifying the structure of enzymes.

– Each gene encodes the structure of one enzyme (Beadle and Tatum).

Many enzymes contain multiple polypeptide subunits, each encoded by a separate gene.

Page 27: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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One-Gene / One-Polypeptide

Page 28: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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Summary

• Genetic Material Experiments• Chemical Nature of Nucleic Acids• Three-Dimensional Structure of DNA

– Watson and Crick• Replication

– Semi Conservative– Replication Process

• Eukaryotic DNA Replication• One-Gene/One-Polypeptide Hypothesis

Page 29: 1 DNA: The Genetic Material Chapter 14. 2 Outline Genetic Material Experiments Chemical Nature of Nucleic Acids Three-Dimensional Structure of DNA – Watson.

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