WSSV - White spot syndrome virus · 2015-05-13 · WSSV - White spot syndrome virus. RCN Marine Disease Modeling and Transmission Workshop – May 2015

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WSSV - White spot syndrome virus

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Digestive tract Ventral Nerve chord

Circulatory system Respiratory system

Hematopoietic tissueLymphoid organ

Female reproductive tract Male reproductive tract

Decapod anatomy

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

210-380nm

70-167nm

Envelope

Envelope proteins

Envelope extension

Nucleocapsid

Genome

Tegument

bull dsDNA - ~300kbpbull 185 ORFs

bull Baculoviralesbull Nimaviridae

bull Whispovirus

WSSV

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

ldquoBaculoviralesrdquoNimaviruses

HystrosavirusesGpSGHV

MdGHV

WSSV

CunNPV

NeleNPV

AcMNPV

CpGV

HzNV-1

PmNV

GbNV

OrNV

CcBV

TnZBV

CiBV

Bracoviruses

Nudiviruses

Baculoviruses

Wang Y Jehle JA 2009 JIP 101 187-193 Wang Y et al 2011 Vir Gen 42444 ndash 456 Theacutezeacute J et al 2011 PNAS 10815931-35

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Source FAO

Worlds Production of Penaeid Shrimp

AquacultureCaptureTotal

0

5

10

15

1950 1970 1990 2010

75

25

Poun

ds (x

109 )

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Shrimp commodity production

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Shrimp Aquaculture SpeciesLitopenaeus vannamei Penaeus monodon

Marsupenaeus japonicusFenneropenaeus chinensis

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

050

100150200250300350400450500

1980 1985 1990 1995

Year

Mill

ions

of P

ound

s

Production of Farmed Shrimp - China

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

19921994 1994 1998

1996

19932002

200219971995

1999

19991999

1999

2005

Spread of WSSV

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Emergence of White spot syndrome virus

1 km

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

1 Environment changes bringing new contactsMore shrimpPonds built in new areas ndash where shrimp never were or in low numbersMore contact between other (terrestrial) arthropods and shrimp

2 Change in pathogen virulence

3 Introduced from elsewhere

Emergence of White spot syndrome virus

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Source FAO

Worlds Production of Penaeid Shrimp

AquacultureCaptureTotal

0

5

10

15

Poun

ds (x

109 )

1950 1970 1990 2010

75

25

Worlds Production of Penaeid Shrimp

AquacultureCaptureTotal

0

5

10

15

Poun

ds (x

109 )

1950 1970 1990 2010

75

25

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

More shrimp ndash more placesGreater opportunity for contact between shrimp and other arthropods

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Hosts of WSSV bull Shrimp

ndash Penaeusbull monodonbull semisulcatus

ndash Farfantepenaeusbull aztecusbull duorarum

ndash Fenneropenaeusbull chinensisbull indicusbull merguensisbull penicillatus

ndash Marsupenaeusbull japonicus

ndash Litopenaeusbull vannameibull stylirostrisbull setiferus

ndash Metapenaeus ensis

ndash Exopalaemonbull orientalis

ndash Macrobrachium sppndash Palaemon styliferuusndash Palaemonetes pugio

bull Crabndash Calappa lophosndash Charybdis

bull feriatabull natotor

ndash Helice spndash Portunus

bull pelagicusbull Sanguineolentus

ndash Callinectes sapidus

ndash Armasus cinereumndash Scylla serratandash Sesarma sppndash Sommanniathelpusa spndash Thalamita spndash Uca sppndash Menippe adina

bull Lobsterndash Panuluris

bull longipesbull ornatusbull argus

bull Crayfishndash Procambarus clarkiindash Cherax quadricarinatus

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

0

100

200

300

400

500

600

700

800

900

1000

0 3 6 9 12 15 18 21

Num

ber o

f shr

imp

Day

Weight 3 gDensity 550m3

Dose 003 bwfinal survival 000 003max daily mortality 10 06

WSSV Litopenaeus vannamei

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Armasus cinereum

Uca panacea

Callinectes sapidus

Litopenaeus setiferus

Uca speciosa

Local decapods exposed to WSSV (China)

0 5 10 15 20 25 30Day

00

01

02

03

04

05

06

07

08

09

10

Surv

ival

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Salt marshes

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Mississippi sound

Jourdan

Biloxi

Pearl

Wolf

Lake Pontchartrain

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Prevalence of WSSV in decapods of Ms Sound

Blue crab (Callinectes sapidus) (83 n=12)

Purple marsh crab (Sesarma reticulatum) (100 n=20)

Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

Panacea sand fiddler crab (U panacea) (108 n=1404)

Mudflat fiddler crab (U rapax) (230 n=88)

Spined fiddler crab (U spinicarpa) (357 n=98)

Red-jointed fiddler crab (U minax) (227 n=22)

Squareback marsh crab (Armasus cinereum) (267 n=30)

Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

White shrimp (Litopenaeus setiferus) (200 n=40)

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Modeling WSSV in communities of decapods

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

WSSV life cycle diagram

λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

δ η

Susceptible Infected Dead

β

χ

λ

micro

α micro

( ) ( )( )( ) ( )( ) ( ) ( )( )

( ) ( )( ) ( ) ( )( )

1

1

1

1 1 1

1 1 1 1 1 1

1 1 1 1 1 1

t t

t t

I Dt t t

I Dt t t t

t t t t

S S S

I I S I

D D I D

β χ λ micro

β χ α micro

α micro η δ

+

+

+

= minus sdot minus minus minus + minus

= + sdot minus minus minus minus minus minus sdot minus sdot

= + minus minus sdot minus sdot minus minus minus sdot minus sdot

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

( )1-

t t t tS S S Iβ

+= sdot sdot

RossKermack-McKendrick

1- (1 )(1 ) t

t t tIS S S β+

= sdot minus minusReed-Frost

Black-Singer

Transmission terms - Force of infection λprobability of infection after contact

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

( )1 1 Iλ β= minus minus

( )Iλ β= sdot

Force of InfectionProbability of infection after contact with all infecteds

Ross

Reed-Frost

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

1 2 3 4 5 6 7

1 11 12 13 14 15 16 17

2 21 22 23 24 25 26 27

3 31 32 33 34 35 36 37

S S S S S S S

I SI SI SI SI SI SI SI

I SI SI SI SI SI SI SI

I SI SI SI SI SI SI SI

( )1-

t t t tS S S Iβ

+= sdot sdot

RossKermack-McKendrick

If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

May have more infects than susceptiblesSome transmissions are to the same susceptible

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

2(1 )βminus

1 βminusβ 1 βminusβ

21 (1 )βminus minus

3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

1- (1 )(1 ) t

t t tIS S S β+

= sdot minus minusReed-Frost

Black-Singer

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Epidemic models ndash parameter estimates

( ) ( )( )( ) ( )( )

( ) ( )( )

1

1

1

1 1 1

1 1 1

1 1 1

t t

t t

I Dt t t

I Dt t t t

t t t t

S S S

I I S I

D D I D

β χ

β χ α

α η δ

+

+

+

= minus sdot minus minus minus

= + sdot minus minus minus minus sdot

= + sdot minus minus minus sdot minus sdot

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

If t = 1 and I0 = 1

1

0

1 ss

β

= minus

The proportion infected after exposure to one infected shrimpβ

Parameter estimates ndash transmission (β χ)

1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

Solve for β

1

1

0

0

ln(1) 1 exp

tSS

= minus

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Parameter estimates ndash transmission (β χ)

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Parameter estimates ndash transmission (β χ)

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Parameter estimates ndash transmission (β χ)

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

Parameter estimates ndash transmission (β χ) and virulence (α)

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

1t t tI I I α+ = minus sdot

0

10

20

30

40

0 4 8 12 16Time (h)

Surv

ival

Parameter estimates ndash virulence (α)

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

decomposition

transmission decreases by 48 per day

y-intercept = 0499

0 4 8 12Days after death

00

02

04

06

08

10

Tran

smis

sion

χ

Parameter estimates ndash decay of transmission (δ)

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Parameter estimates η consumption of shrimp

24 shrimp12 shrimp

6 shrimp1 shrimp

FedFasted

decrease per hr (day) decrease per hr (day)

0 10 20 30Time (hr)

00

02

04

06

08

10

Prop

ortio

n B

iom

ass

0 10 20 300 10 20 300 10 20 300 10 20 30

10

0 10 20 30Time (hr)

00

02

04

06

08

Prop

ortio

n B

iom

ass

0 10 20 300 10 20 300 10 20 300 10 20 30

17 (99)30 (100)34 (100)33 (100)

6 (79)11 (94)11 (94)12 (96)

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

Parameter estimates consumption (η) amp decomposition (δ) combined

048 + 100 - 10 048= 100

048 + 79 - 7948= 089

An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

State Duration Transmission Product

Live Infected β

Dead Infected χ( )( )

11 1 1δ ηminus minus minus

βα

( )( )1 1 1χδ ηminus minus minus

0R β χα δ η δ η

= ++ minus sdot

Life table of infection

001 06 0904 05 09 05 09

R = + =+ minus sdot

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

WSSV life cycle diagram3-host community

Susceptible

Susceptible

Susceptible Infected

Infected

Infected Dead

Dead

Dead

β31

χ31

χ11

β11λ1

λ2

λ3

micro1

micro2

micro3

β12 β21 χ21

α1 micro1

α2 micro2

α3 micro3

χ12

δ1 η1

δ2 η2

δ3 η3χ33

β33

χ13

β13

χ22

β32χ32

β22

χ23β23

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

( ) ( )

( ) ( )( ) ( )

( ) ( )

( ) ( )( ) ( )

3

1 11

3

1 1 11

1

3

2 21

3

2 2 21

2

3

1 1 0 0 0 0 0 0 0 0

1 1 1 1 0 0 0 0 0 0 0

0 1 1 1 0 0 0 0 0 0

0 0 0 1 1 0 0 0 0 0

0 0 0 1 1 1 1 0 0 0 0

0 0 0 0 1 1 1 0 0 0

0 0 0 0 0 0 1

i i

i i

i i

i i

I Di i

i

I Di i

i

I Di i

i

I Di i

i

β χ

β χ α

α δ η

β χ

β χ α

α δ η

β

=

=

=

=

minus sdot minus

minus minus sdot minus minus

minus minus sdot minus

minus sdot minus

minus minus sdot minus minus

minus minus sdot minus

minus

prod

prod

prod

prod

( ) ( )

( ) ( )( ) ( )

1

1

1

2

2

2

3

33

331

3

3 3 31

3

1 0 0

0 0 0 0 0 0 1 1 1 1 0

0 0 0 0 0 0 0 1 1 1

i i

i i

I Di i

i

I Di i

i

SIDSIDSIDχ

β χ α

α δ η

=

=

sdot

sdot minus

minus minus sdot minus minus minus minus sdot minus

prod

prod

WSSV 3-host community matrix model

RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

  • Slide Number 1
  • Slide Number 2
  • Slide Number 3
  • Slide Number 4
  • Slide Number 5
  • Slide Number 6
  • Slide Number 7
  • Slide Number 8
  • Slide Number 9
  • Emergence of White spot syndrome virus
  • Slide Number 11
  • Slide Number 12
  • Slide Number 13
  • Hosts of WSSV
  • WSSV Litopenaeus vannamei
  • Slide Number 16
  • Slide Number 17
  • Slide Number 18
  • Slide Number 19
  • Slide Number 20
  • Slide Number 21
  • Slide Number 22
  • Slide Number 23
  • Slide Number 24
  • Slide Number 25
  • Slide Number 26
  • Slide Number 27
  • Slide Number 28
  • Slide Number 29
  • Slide Number 30
  • Slide Number 31
  • Slide Number 32
  • Slide Number 33
  • Slide Number 34
  • Slide Number 35
  • Slide Number 36
  • Slide Number 37
  • Slide Number 38

    Digestive tract Ventral Nerve chord

    Circulatory system Respiratory system

    Hematopoietic tissueLymphoid organ

    Female reproductive tract Male reproductive tract

    Decapod anatomy

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    210-380nm

    70-167nm

    Envelope

    Envelope proteins

    Envelope extension

    Nucleocapsid

    Genome

    Tegument

    bull dsDNA - ~300kbpbull 185 ORFs

    bull Baculoviralesbull Nimaviridae

    bull Whispovirus

    WSSV

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    ldquoBaculoviralesrdquoNimaviruses

    HystrosavirusesGpSGHV

    MdGHV

    WSSV

    CunNPV

    NeleNPV

    AcMNPV

    CpGV

    HzNV-1

    PmNV

    GbNV

    OrNV

    CcBV

    TnZBV

    CiBV

    Bracoviruses

    Nudiviruses

    Baculoviruses

    Wang Y Jehle JA 2009 JIP 101 187-193 Wang Y et al 2011 Vir Gen 42444 ndash 456 Theacutezeacute J et al 2011 PNAS 10815931-35

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Source FAO

    Worlds Production of Penaeid Shrimp

    AquacultureCaptureTotal

    0

    5

    10

    15

    1950 1970 1990 2010

    75

    25

    Poun

    ds (x

    109 )

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Shrimp commodity production

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Shrimp Aquaculture SpeciesLitopenaeus vannamei Penaeus monodon

    Marsupenaeus japonicusFenneropenaeus chinensis

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    050

    100150200250300350400450500

    1980 1985 1990 1995

    Year

    Mill

    ions

    of P

    ound

    s

    Production of Farmed Shrimp - China

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    19921994 1994 1998

    1996

    19932002

    200219971995

    1999

    19991999

    1999

    2005

    Spread of WSSV

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Emergence of White spot syndrome virus

    1 km

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    1 Environment changes bringing new contactsMore shrimpPonds built in new areas ndash where shrimp never were or in low numbersMore contact between other (terrestrial) arthropods and shrimp

    2 Change in pathogen virulence

    3 Introduced from elsewhere

    Emergence of White spot syndrome virus

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Source FAO

    Worlds Production of Penaeid Shrimp

    AquacultureCaptureTotal

    0

    5

    10

    15

    Poun

    ds (x

    109 )

    1950 1970 1990 2010

    75

    25

    Worlds Production of Penaeid Shrimp

    AquacultureCaptureTotal

    0

    5

    10

    15

    Poun

    ds (x

    109 )

    1950 1970 1990 2010

    75

    25

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    More shrimp ndash more placesGreater opportunity for contact between shrimp and other arthropods

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Hosts of WSSV bull Shrimp

    ndash Penaeusbull monodonbull semisulcatus

    ndash Farfantepenaeusbull aztecusbull duorarum

    ndash Fenneropenaeusbull chinensisbull indicusbull merguensisbull penicillatus

    ndash Marsupenaeusbull japonicus

    ndash Litopenaeusbull vannameibull stylirostrisbull setiferus

    ndash Metapenaeus ensis

    ndash Exopalaemonbull orientalis

    ndash Macrobrachium sppndash Palaemon styliferuusndash Palaemonetes pugio

    bull Crabndash Calappa lophosndash Charybdis

    bull feriatabull natotor

    ndash Helice spndash Portunus

    bull pelagicusbull Sanguineolentus

    ndash Callinectes sapidus

    ndash Armasus cinereumndash Scylla serratandash Sesarma sppndash Sommanniathelpusa spndash Thalamita spndash Uca sppndash Menippe adina

    bull Lobsterndash Panuluris

    bull longipesbull ornatusbull argus

    bull Crayfishndash Procambarus clarkiindash Cherax quadricarinatus

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    0

    100

    200

    300

    400

    500

    600

    700

    800

    900

    1000

    0 3 6 9 12 15 18 21

    Num

    ber o

    f shr

    imp

    Day

    Weight 3 gDensity 550m3

    Dose 003 bwfinal survival 000 003max daily mortality 10 06

    WSSV Litopenaeus vannamei

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Armasus cinereum

    Uca panacea

    Callinectes sapidus

    Litopenaeus setiferus

    Uca speciosa

    Local decapods exposed to WSSV (China)

    0 5 10 15 20 25 30Day

    00

    01

    02

    03

    04

    05

    06

    07

    08

    09

    10

    Surv

    ival

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Salt marshes

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Mississippi sound

    Jourdan

    Biloxi

    Pearl

    Wolf

    Lake Pontchartrain

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Prevalence of WSSV in decapods of Ms Sound

    Blue crab (Callinectes sapidus) (83 n=12)

    Purple marsh crab (Sesarma reticulatum) (100 n=20)

    Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

    Panacea sand fiddler crab (U panacea) (108 n=1404)

    Mudflat fiddler crab (U rapax) (230 n=88)

    Spined fiddler crab (U spinicarpa) (357 n=98)

    Red-jointed fiddler crab (U minax) (227 n=22)

    Squareback marsh crab (Armasus cinereum) (267 n=30)

    Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

    White shrimp (Litopenaeus setiferus) (200 n=40)

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Modeling WSSV in communities of decapods

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    WSSV life cycle diagram

    λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

    δ η

    Susceptible Infected Dead

    β

    χ

    λ

    micro

    α micro

    ( ) ( )( )( ) ( )( ) ( ) ( )( )

    ( ) ( )( ) ( ) ( )( )

    1

    1

    1

    1 1 1

    1 1 1 1 1 1

    1 1 1 1 1 1

    t t

    t t

    I Dt t t

    I Dt t t t

    t t t t

    S S S

    I I S I

    D D I D

    β χ λ micro

    β χ α micro

    α micro η δ

    +

    +

    +

    = minus sdot minus minus minus + minus

    = + sdot minus minus minus minus minus minus sdot minus sdot

    = + minus minus sdot minus sdot minus minus minus sdot minus sdot

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    ( )1-

    t t t tS S S Iβ

    += sdot sdot

    RossKermack-McKendrick

    1- (1 )(1 ) t

    t t tIS S S β+

    = sdot minus minusReed-Frost

    Black-Singer

    Transmission terms - Force of infection λprobability of infection after contact

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    ( )1 1 Iλ β= minus minus

    ( )Iλ β= sdot

    Force of InfectionProbability of infection after contact with all infecteds

    Ross

    Reed-Frost

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    1 2 3 4 5 6 7

    1 11 12 13 14 15 16 17

    2 21 22 23 24 25 26 27

    3 31 32 33 34 35 36 37

    S S S S S S S

    I SI SI SI SI SI SI SI

    I SI SI SI SI SI SI SI

    I SI SI SI SI SI SI SI

    ( )1-

    t t t tS S S Iβ

    += sdot sdot

    RossKermack-McKendrick

    If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

    May have more infects than susceptiblesSome transmissions are to the same susceptible

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    2(1 )βminus

    1 βminusβ 1 βminusβ

    21 (1 )βminus minus

    3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

    Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

    βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

    1- (1 )(1 ) t

    t t tIS S S β+

    = sdot minus minusReed-Frost

    Black-Singer

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Epidemic models ndash parameter estimates

    ( ) ( )( )( ) ( )( )

    ( ) ( )( )

    1

    1

    1

    1 1 1

    1 1 1

    1 1 1

    t t

    t t

    I Dt t t

    I Dt t t t

    t t t t

    S S S

    I I S I

    D D I D

    β χ

    β χ α

    α η δ

    +

    +

    +

    = minus sdot minus minus minus

    = + sdot minus minus minus minus sdot

    = + sdot minus minus minus sdot minus sdot

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    If t = 1 and I0 = 1

    1

    0

    1 ss

    β

    = minus

    The proportion infected after exposure to one infected shrimpβ

    Parameter estimates ndash transmission (β χ)

    1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

    Solve for β

    1

    1

    0

    0

    ln(1) 1 exp

    tSS

    = minus

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Parameter estimates ndash transmission (β χ)

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Parameter estimates ndash transmission (β χ)

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Parameter estimates ndash transmission (β χ)

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

    Parameter estimates ndash transmission (β χ) and virulence (α)

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    1t t tI I I α+ = minus sdot

    0

    10

    20

    30

    40

    0 4 8 12 16Time (h)

    Surv

    ival

    Parameter estimates ndash virulence (α)

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    decomposition

    transmission decreases by 48 per day

    y-intercept = 0499

    0 4 8 12Days after death

    00

    02

    04

    06

    08

    10

    Tran

    smis

    sion

    χ

    Parameter estimates ndash decay of transmission (δ)

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Parameter estimates η consumption of shrimp

    24 shrimp12 shrimp

    6 shrimp1 shrimp

    FedFasted

    decrease per hr (day) decrease per hr (day)

    0 10 20 30Time (hr)

    00

    02

    04

    06

    08

    10

    Prop

    ortio

    n B

    iom

    ass

    0 10 20 300 10 20 300 10 20 300 10 20 30

    10

    0 10 20 30Time (hr)

    00

    02

    04

    06

    08

    Prop

    ortio

    n B

    iom

    ass

    0 10 20 300 10 20 300 10 20 300 10 20 30

    17 (99)30 (100)34 (100)33 (100)

    6 (79)11 (94)11 (94)12 (96)

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    Parameter estimates consumption (η) amp decomposition (δ) combined

    048 + 100 - 10 048= 100

    048 + 79 - 7948= 089

    An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    State Duration Transmission Product

    Live Infected β

    Dead Infected χ( )( )

    11 1 1δ ηminus minus minus

    βα

    ( )( )1 1 1χδ ηminus minus minus

    0R β χα δ η δ η

    = ++ minus sdot

    Life table of infection

    001 06 0904 05 09 05 09

    R = + =+ minus sdot

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    WSSV life cycle diagram3-host community

    Susceptible

    Susceptible

    Susceptible Infected

    Infected

    Infected Dead

    Dead

    Dead

    β31

    χ31

    χ11

    β11λ1

    λ2

    λ3

    micro1

    micro2

    micro3

    β12 β21 χ21

    α1 micro1

    α2 micro2

    α3 micro3

    χ12

    δ1 η1

    δ2 η2

    δ3 η3χ33

    β33

    χ13

    β13

    χ22

    β32χ32

    β22

    χ23β23

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    ( ) ( )

    ( ) ( )( ) ( )

    ( ) ( )

    ( ) ( )( ) ( )

    3

    1 11

    3

    1 1 11

    1

    3

    2 21

    3

    2 2 21

    2

    3

    1 1 0 0 0 0 0 0 0 0

    1 1 1 1 0 0 0 0 0 0 0

    0 1 1 1 0 0 0 0 0 0

    0 0 0 1 1 0 0 0 0 0

    0 0 0 1 1 1 1 0 0 0 0

    0 0 0 0 1 1 1 0 0 0

    0 0 0 0 0 0 1

    i i

    i i

    i i

    i i

    I Di i

    i

    I Di i

    i

    I Di i

    i

    I Di i

    i

    β χ

    β χ α

    α δ η

    β χ

    β χ α

    α δ η

    β

    =

    =

    =

    =

    minus sdot minus

    minus minus sdot minus minus

    minus minus sdot minus

    minus sdot minus

    minus minus sdot minus minus

    minus minus sdot minus

    minus

    prod

    prod

    prod

    prod

    ( ) ( )

    ( ) ( )( ) ( )

    1

    1

    1

    2

    2

    2

    3

    33

    331

    3

    3 3 31

    3

    1 0 0

    0 0 0 0 0 0 1 1 1 1 0

    0 0 0 0 0 0 0 1 1 1

    i i

    i i

    I Di i

    i

    I Di i

    i

    SIDSIDSIDχ

    β χ α

    α δ η

    =

    =

    sdot

    sdot minus

    minus minus sdot minus minus minus minus sdot minus

    prod

    prod

    WSSV 3-host community matrix model

    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

    • Slide Number 1
    • Slide Number 2
    • Slide Number 3
    • Slide Number 4
    • Slide Number 5
    • Slide Number 6
    • Slide Number 7
    • Slide Number 8
    • Slide Number 9
    • Emergence of White spot syndrome virus
    • Slide Number 11
    • Slide Number 12
    • Slide Number 13
    • Hosts of WSSV
    • WSSV Litopenaeus vannamei
    • Slide Number 16
    • Slide Number 17
    • Slide Number 18
    • Slide Number 19
    • Slide Number 20
    • Slide Number 21
    • Slide Number 22
    • Slide Number 23
    • Slide Number 24
    • Slide Number 25
    • Slide Number 26
    • Slide Number 27
    • Slide Number 28
    • Slide Number 29
    • Slide Number 30
    • Slide Number 31
    • Slide Number 32
    • Slide Number 33
    • Slide Number 34
    • Slide Number 35
    • Slide Number 36
    • Slide Number 37
    • Slide Number 38

      210-380nm

      70-167nm

      Envelope

      Envelope proteins

      Envelope extension

      Nucleocapsid

      Genome

      Tegument

      bull dsDNA - ~300kbpbull 185 ORFs

      bull Baculoviralesbull Nimaviridae

      bull Whispovirus

      WSSV

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      ldquoBaculoviralesrdquoNimaviruses

      HystrosavirusesGpSGHV

      MdGHV

      WSSV

      CunNPV

      NeleNPV

      AcMNPV

      CpGV

      HzNV-1

      PmNV

      GbNV

      OrNV

      CcBV

      TnZBV

      CiBV

      Bracoviruses

      Nudiviruses

      Baculoviruses

      Wang Y Jehle JA 2009 JIP 101 187-193 Wang Y et al 2011 Vir Gen 42444 ndash 456 Theacutezeacute J et al 2011 PNAS 10815931-35

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Source FAO

      Worlds Production of Penaeid Shrimp

      AquacultureCaptureTotal

      0

      5

      10

      15

      1950 1970 1990 2010

      75

      25

      Poun

      ds (x

      109 )

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Shrimp commodity production

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Shrimp Aquaculture SpeciesLitopenaeus vannamei Penaeus monodon

      Marsupenaeus japonicusFenneropenaeus chinensis

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      050

      100150200250300350400450500

      1980 1985 1990 1995

      Year

      Mill

      ions

      of P

      ound

      s

      Production of Farmed Shrimp - China

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      19921994 1994 1998

      1996

      19932002

      200219971995

      1999

      19991999

      1999

      2005

      Spread of WSSV

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Emergence of White spot syndrome virus

      1 km

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      1 Environment changes bringing new contactsMore shrimpPonds built in new areas ndash where shrimp never were or in low numbersMore contact between other (terrestrial) arthropods and shrimp

      2 Change in pathogen virulence

      3 Introduced from elsewhere

      Emergence of White spot syndrome virus

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Source FAO

      Worlds Production of Penaeid Shrimp

      AquacultureCaptureTotal

      0

      5

      10

      15

      Poun

      ds (x

      109 )

      1950 1970 1990 2010

      75

      25

      Worlds Production of Penaeid Shrimp

      AquacultureCaptureTotal

      0

      5

      10

      15

      Poun

      ds (x

      109 )

      1950 1970 1990 2010

      75

      25

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      More shrimp ndash more placesGreater opportunity for contact between shrimp and other arthropods

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Hosts of WSSV bull Shrimp

      ndash Penaeusbull monodonbull semisulcatus

      ndash Farfantepenaeusbull aztecusbull duorarum

      ndash Fenneropenaeusbull chinensisbull indicusbull merguensisbull penicillatus

      ndash Marsupenaeusbull japonicus

      ndash Litopenaeusbull vannameibull stylirostrisbull setiferus

      ndash Metapenaeus ensis

      ndash Exopalaemonbull orientalis

      ndash Macrobrachium sppndash Palaemon styliferuusndash Palaemonetes pugio

      bull Crabndash Calappa lophosndash Charybdis

      bull feriatabull natotor

      ndash Helice spndash Portunus

      bull pelagicusbull Sanguineolentus

      ndash Callinectes sapidus

      ndash Armasus cinereumndash Scylla serratandash Sesarma sppndash Sommanniathelpusa spndash Thalamita spndash Uca sppndash Menippe adina

      bull Lobsterndash Panuluris

      bull longipesbull ornatusbull argus

      bull Crayfishndash Procambarus clarkiindash Cherax quadricarinatus

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      0

      100

      200

      300

      400

      500

      600

      700

      800

      900

      1000

      0 3 6 9 12 15 18 21

      Num

      ber o

      f shr

      imp

      Day

      Weight 3 gDensity 550m3

      Dose 003 bwfinal survival 000 003max daily mortality 10 06

      WSSV Litopenaeus vannamei

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Armasus cinereum

      Uca panacea

      Callinectes sapidus

      Litopenaeus setiferus

      Uca speciosa

      Local decapods exposed to WSSV (China)

      0 5 10 15 20 25 30Day

      00

      01

      02

      03

      04

      05

      06

      07

      08

      09

      10

      Surv

      ival

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Salt marshes

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Mississippi sound

      Jourdan

      Biloxi

      Pearl

      Wolf

      Lake Pontchartrain

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Prevalence of WSSV in decapods of Ms Sound

      Blue crab (Callinectes sapidus) (83 n=12)

      Purple marsh crab (Sesarma reticulatum) (100 n=20)

      Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

      Panacea sand fiddler crab (U panacea) (108 n=1404)

      Mudflat fiddler crab (U rapax) (230 n=88)

      Spined fiddler crab (U spinicarpa) (357 n=98)

      Red-jointed fiddler crab (U minax) (227 n=22)

      Squareback marsh crab (Armasus cinereum) (267 n=30)

      Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

      White shrimp (Litopenaeus setiferus) (200 n=40)

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Modeling WSSV in communities of decapods

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      WSSV life cycle diagram

      λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

      δ η

      Susceptible Infected Dead

      β

      χ

      λ

      micro

      α micro

      ( ) ( )( )( ) ( )( ) ( ) ( )( )

      ( ) ( )( ) ( ) ( )( )

      1

      1

      1

      1 1 1

      1 1 1 1 1 1

      1 1 1 1 1 1

      t t

      t t

      I Dt t t

      I Dt t t t

      t t t t

      S S S

      I I S I

      D D I D

      β χ λ micro

      β χ α micro

      α micro η δ

      +

      +

      +

      = minus sdot minus minus minus + minus

      = + sdot minus minus minus minus minus minus sdot minus sdot

      = + minus minus sdot minus sdot minus minus minus sdot minus sdot

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      ( )1-

      t t t tS S S Iβ

      += sdot sdot

      RossKermack-McKendrick

      1- (1 )(1 ) t

      t t tIS S S β+

      = sdot minus minusReed-Frost

      Black-Singer

      Transmission terms - Force of infection λprobability of infection after contact

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      ( )1 1 Iλ β= minus minus

      ( )Iλ β= sdot

      Force of InfectionProbability of infection after contact with all infecteds

      Ross

      Reed-Frost

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      1 2 3 4 5 6 7

      1 11 12 13 14 15 16 17

      2 21 22 23 24 25 26 27

      3 31 32 33 34 35 36 37

      S S S S S S S

      I SI SI SI SI SI SI SI

      I SI SI SI SI SI SI SI

      I SI SI SI SI SI SI SI

      ( )1-

      t t t tS S S Iβ

      += sdot sdot

      RossKermack-McKendrick

      If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

      May have more infects than susceptiblesSome transmissions are to the same susceptible

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      2(1 )βminus

      1 βminusβ 1 βminusβ

      21 (1 )βminus minus

      3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

      Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

      βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

      1- (1 )(1 ) t

      t t tIS S S β+

      = sdot minus minusReed-Frost

      Black-Singer

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Epidemic models ndash parameter estimates

      ( ) ( )( )( ) ( )( )

      ( ) ( )( )

      1

      1

      1

      1 1 1

      1 1 1

      1 1 1

      t t

      t t

      I Dt t t

      I Dt t t t

      t t t t

      S S S

      I I S I

      D D I D

      β χ

      β χ α

      α η δ

      +

      +

      +

      = minus sdot minus minus minus

      = + sdot minus minus minus minus sdot

      = + sdot minus minus minus sdot minus sdot

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      If t = 1 and I0 = 1

      1

      0

      1 ss

      β

      = minus

      The proportion infected after exposure to one infected shrimpβ

      Parameter estimates ndash transmission (β χ)

      1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

      Solve for β

      1

      1

      0

      0

      ln(1) 1 exp

      tSS

      = minus

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Parameter estimates ndash transmission (β χ)

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Parameter estimates ndash transmission (β χ)

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Parameter estimates ndash transmission (β χ)

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

      Parameter estimates ndash transmission (β χ) and virulence (α)

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      1t t tI I I α+ = minus sdot

      0

      10

      20

      30

      40

      0 4 8 12 16Time (h)

      Surv

      ival

      Parameter estimates ndash virulence (α)

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      decomposition

      transmission decreases by 48 per day

      y-intercept = 0499

      0 4 8 12Days after death

      00

      02

      04

      06

      08

      10

      Tran

      smis

      sion

      χ

      Parameter estimates ndash decay of transmission (δ)

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Parameter estimates η consumption of shrimp

      24 shrimp12 shrimp

      6 shrimp1 shrimp

      FedFasted

      decrease per hr (day) decrease per hr (day)

      0 10 20 30Time (hr)

      00

      02

      04

      06

      08

      10

      Prop

      ortio

      n B

      iom

      ass

      0 10 20 300 10 20 300 10 20 300 10 20 30

      10

      0 10 20 30Time (hr)

      00

      02

      04

      06

      08

      Prop

      ortio

      n B

      iom

      ass

      0 10 20 300 10 20 300 10 20 300 10 20 30

      17 (99)30 (100)34 (100)33 (100)

      6 (79)11 (94)11 (94)12 (96)

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      Parameter estimates consumption (η) amp decomposition (δ) combined

      048 + 100 - 10 048= 100

      048 + 79 - 7948= 089

      An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      State Duration Transmission Product

      Live Infected β

      Dead Infected χ( )( )

      11 1 1δ ηminus minus minus

      βα

      ( )( )1 1 1χδ ηminus minus minus

      0R β χα δ η δ η

      = ++ minus sdot

      Life table of infection

      001 06 0904 05 09 05 09

      R = + =+ minus sdot

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      WSSV life cycle diagram3-host community

      Susceptible

      Susceptible

      Susceptible Infected

      Infected

      Infected Dead

      Dead

      Dead

      β31

      χ31

      χ11

      β11λ1

      λ2

      λ3

      micro1

      micro2

      micro3

      β12 β21 χ21

      α1 micro1

      α2 micro2

      α3 micro3

      χ12

      δ1 η1

      δ2 η2

      δ3 η3χ33

      β33

      χ13

      β13

      χ22

      β32χ32

      β22

      χ23β23

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      ( ) ( )

      ( ) ( )( ) ( )

      ( ) ( )

      ( ) ( )( ) ( )

      3

      1 11

      3

      1 1 11

      1

      3

      2 21

      3

      2 2 21

      2

      3

      1 1 0 0 0 0 0 0 0 0

      1 1 1 1 0 0 0 0 0 0 0

      0 1 1 1 0 0 0 0 0 0

      0 0 0 1 1 0 0 0 0 0

      0 0 0 1 1 1 1 0 0 0 0

      0 0 0 0 1 1 1 0 0 0

      0 0 0 0 0 0 1

      i i

      i i

      i i

      i i

      I Di i

      i

      I Di i

      i

      I Di i

      i

      I Di i

      i

      β χ

      β χ α

      α δ η

      β χ

      β χ α

      α δ η

      β

      =

      =

      =

      =

      minus sdot minus

      minus minus sdot minus minus

      minus minus sdot minus

      minus sdot minus

      minus minus sdot minus minus

      minus minus sdot minus

      minus

      prod

      prod

      prod

      prod

      ( ) ( )

      ( ) ( )( ) ( )

      1

      1

      1

      2

      2

      2

      3

      33

      331

      3

      3 3 31

      3

      1 0 0

      0 0 0 0 0 0 1 1 1 1 0

      0 0 0 0 0 0 0 1 1 1

      i i

      i i

      I Di i

      i

      I Di i

      i

      SIDSIDSIDχ

      β χ α

      α δ η

      =

      =

      sdot

      sdot minus

      minus minus sdot minus minus minus minus sdot minus

      prod

      prod

      WSSV 3-host community matrix model

      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

      • Slide Number 1
      • Slide Number 2
      • Slide Number 3
      • Slide Number 4
      • Slide Number 5
      • Slide Number 6
      • Slide Number 7
      • Slide Number 8
      • Slide Number 9
      • Emergence of White spot syndrome virus
      • Slide Number 11
      • Slide Number 12
      • Slide Number 13
      • Hosts of WSSV
      • WSSV Litopenaeus vannamei
      • Slide Number 16
      • Slide Number 17
      • Slide Number 18
      • Slide Number 19
      • Slide Number 20
      • Slide Number 21
      • Slide Number 22
      • Slide Number 23
      • Slide Number 24
      • Slide Number 25
      • Slide Number 26
      • Slide Number 27
      • Slide Number 28
      • Slide Number 29
      • Slide Number 30
      • Slide Number 31
      • Slide Number 32
      • Slide Number 33
      • Slide Number 34
      • Slide Number 35
      • Slide Number 36
      • Slide Number 37
      • Slide Number 38

        ldquoBaculoviralesrdquoNimaviruses

        HystrosavirusesGpSGHV

        MdGHV

        WSSV

        CunNPV

        NeleNPV

        AcMNPV

        CpGV

        HzNV-1

        PmNV

        GbNV

        OrNV

        CcBV

        TnZBV

        CiBV

        Bracoviruses

        Nudiviruses

        Baculoviruses

        Wang Y Jehle JA 2009 JIP 101 187-193 Wang Y et al 2011 Vir Gen 42444 ndash 456 Theacutezeacute J et al 2011 PNAS 10815931-35

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Source FAO

        Worlds Production of Penaeid Shrimp

        AquacultureCaptureTotal

        0

        5

        10

        15

        1950 1970 1990 2010

        75

        25

        Poun

        ds (x

        109 )

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Shrimp commodity production

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Shrimp Aquaculture SpeciesLitopenaeus vannamei Penaeus monodon

        Marsupenaeus japonicusFenneropenaeus chinensis

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        050

        100150200250300350400450500

        1980 1985 1990 1995

        Year

        Mill

        ions

        of P

        ound

        s

        Production of Farmed Shrimp - China

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        19921994 1994 1998

        1996

        19932002

        200219971995

        1999

        19991999

        1999

        2005

        Spread of WSSV

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Emergence of White spot syndrome virus

        1 km

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        1 Environment changes bringing new contactsMore shrimpPonds built in new areas ndash where shrimp never were or in low numbersMore contact between other (terrestrial) arthropods and shrimp

        2 Change in pathogen virulence

        3 Introduced from elsewhere

        Emergence of White spot syndrome virus

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Source FAO

        Worlds Production of Penaeid Shrimp

        AquacultureCaptureTotal

        0

        5

        10

        15

        Poun

        ds (x

        109 )

        1950 1970 1990 2010

        75

        25

        Worlds Production of Penaeid Shrimp

        AquacultureCaptureTotal

        0

        5

        10

        15

        Poun

        ds (x

        109 )

        1950 1970 1990 2010

        75

        25

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        More shrimp ndash more placesGreater opportunity for contact between shrimp and other arthropods

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Hosts of WSSV bull Shrimp

        ndash Penaeusbull monodonbull semisulcatus

        ndash Farfantepenaeusbull aztecusbull duorarum

        ndash Fenneropenaeusbull chinensisbull indicusbull merguensisbull penicillatus

        ndash Marsupenaeusbull japonicus

        ndash Litopenaeusbull vannameibull stylirostrisbull setiferus

        ndash Metapenaeus ensis

        ndash Exopalaemonbull orientalis

        ndash Macrobrachium sppndash Palaemon styliferuusndash Palaemonetes pugio

        bull Crabndash Calappa lophosndash Charybdis

        bull feriatabull natotor

        ndash Helice spndash Portunus

        bull pelagicusbull Sanguineolentus

        ndash Callinectes sapidus

        ndash Armasus cinereumndash Scylla serratandash Sesarma sppndash Sommanniathelpusa spndash Thalamita spndash Uca sppndash Menippe adina

        bull Lobsterndash Panuluris

        bull longipesbull ornatusbull argus

        bull Crayfishndash Procambarus clarkiindash Cherax quadricarinatus

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        0

        100

        200

        300

        400

        500

        600

        700

        800

        900

        1000

        0 3 6 9 12 15 18 21

        Num

        ber o

        f shr

        imp

        Day

        Weight 3 gDensity 550m3

        Dose 003 bwfinal survival 000 003max daily mortality 10 06

        WSSV Litopenaeus vannamei

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Armasus cinereum

        Uca panacea

        Callinectes sapidus

        Litopenaeus setiferus

        Uca speciosa

        Local decapods exposed to WSSV (China)

        0 5 10 15 20 25 30Day

        00

        01

        02

        03

        04

        05

        06

        07

        08

        09

        10

        Surv

        ival

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Salt marshes

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Mississippi sound

        Jourdan

        Biloxi

        Pearl

        Wolf

        Lake Pontchartrain

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Prevalence of WSSV in decapods of Ms Sound

        Blue crab (Callinectes sapidus) (83 n=12)

        Purple marsh crab (Sesarma reticulatum) (100 n=20)

        Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

        Panacea sand fiddler crab (U panacea) (108 n=1404)

        Mudflat fiddler crab (U rapax) (230 n=88)

        Spined fiddler crab (U spinicarpa) (357 n=98)

        Red-jointed fiddler crab (U minax) (227 n=22)

        Squareback marsh crab (Armasus cinereum) (267 n=30)

        Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

        White shrimp (Litopenaeus setiferus) (200 n=40)

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Modeling WSSV in communities of decapods

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        WSSV life cycle diagram

        λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

        δ η

        Susceptible Infected Dead

        β

        χ

        λ

        micro

        α micro

        ( ) ( )( )( ) ( )( ) ( ) ( )( )

        ( ) ( )( ) ( ) ( )( )

        1

        1

        1

        1 1 1

        1 1 1 1 1 1

        1 1 1 1 1 1

        t t

        t t

        I Dt t t

        I Dt t t t

        t t t t

        S S S

        I I S I

        D D I D

        β χ λ micro

        β χ α micro

        α micro η δ

        +

        +

        +

        = minus sdot minus minus minus + minus

        = + sdot minus minus minus minus minus minus sdot minus sdot

        = + minus minus sdot minus sdot minus minus minus sdot minus sdot

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        ( )1-

        t t t tS S S Iβ

        += sdot sdot

        RossKermack-McKendrick

        1- (1 )(1 ) t

        t t tIS S S β+

        = sdot minus minusReed-Frost

        Black-Singer

        Transmission terms - Force of infection λprobability of infection after contact

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        ( )1 1 Iλ β= minus minus

        ( )Iλ β= sdot

        Force of InfectionProbability of infection after contact with all infecteds

        Ross

        Reed-Frost

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        1 2 3 4 5 6 7

        1 11 12 13 14 15 16 17

        2 21 22 23 24 25 26 27

        3 31 32 33 34 35 36 37

        S S S S S S S

        I SI SI SI SI SI SI SI

        I SI SI SI SI SI SI SI

        I SI SI SI SI SI SI SI

        ( )1-

        t t t tS S S Iβ

        += sdot sdot

        RossKermack-McKendrick

        If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

        May have more infects than susceptiblesSome transmissions are to the same susceptible

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        2(1 )βminus

        1 βminusβ 1 βminusβ

        21 (1 )βminus minus

        3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

        Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

        βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

        1- (1 )(1 ) t

        t t tIS S S β+

        = sdot minus minusReed-Frost

        Black-Singer

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Epidemic models ndash parameter estimates

        ( ) ( )( )( ) ( )( )

        ( ) ( )( )

        1

        1

        1

        1 1 1

        1 1 1

        1 1 1

        t t

        t t

        I Dt t t

        I Dt t t t

        t t t t

        S S S

        I I S I

        D D I D

        β χ

        β χ α

        α η δ

        +

        +

        +

        = minus sdot minus minus minus

        = + sdot minus minus minus minus sdot

        = + sdot minus minus minus sdot minus sdot

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        If t = 1 and I0 = 1

        1

        0

        1 ss

        β

        = minus

        The proportion infected after exposure to one infected shrimpβ

        Parameter estimates ndash transmission (β χ)

        1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

        Solve for β

        1

        1

        0

        0

        ln(1) 1 exp

        tSS

        = minus

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Parameter estimates ndash transmission (β χ)

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Parameter estimates ndash transmission (β χ)

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Parameter estimates ndash transmission (β χ)

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

        Parameter estimates ndash transmission (β χ) and virulence (α)

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        1t t tI I I α+ = minus sdot

        0

        10

        20

        30

        40

        0 4 8 12 16Time (h)

        Surv

        ival

        Parameter estimates ndash virulence (α)

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        decomposition

        transmission decreases by 48 per day

        y-intercept = 0499

        0 4 8 12Days after death

        00

        02

        04

        06

        08

        10

        Tran

        smis

        sion

        χ

        Parameter estimates ndash decay of transmission (δ)

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Parameter estimates η consumption of shrimp

        24 shrimp12 shrimp

        6 shrimp1 shrimp

        FedFasted

        decrease per hr (day) decrease per hr (day)

        0 10 20 30Time (hr)

        00

        02

        04

        06

        08

        10

        Prop

        ortio

        n B

        iom

        ass

        0 10 20 300 10 20 300 10 20 300 10 20 30

        10

        0 10 20 30Time (hr)

        00

        02

        04

        06

        08

        Prop

        ortio

        n B

        iom

        ass

        0 10 20 300 10 20 300 10 20 300 10 20 30

        17 (99)30 (100)34 (100)33 (100)

        6 (79)11 (94)11 (94)12 (96)

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        Parameter estimates consumption (η) amp decomposition (δ) combined

        048 + 100 - 10 048= 100

        048 + 79 - 7948= 089

        An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        State Duration Transmission Product

        Live Infected β

        Dead Infected χ( )( )

        11 1 1δ ηminus minus minus

        βα

        ( )( )1 1 1χδ ηminus minus minus

        0R β χα δ η δ η

        = ++ minus sdot

        Life table of infection

        001 06 0904 05 09 05 09

        R = + =+ minus sdot

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        WSSV life cycle diagram3-host community

        Susceptible

        Susceptible

        Susceptible Infected

        Infected

        Infected Dead

        Dead

        Dead

        β31

        χ31

        χ11

        β11λ1

        λ2

        λ3

        micro1

        micro2

        micro3

        β12 β21 χ21

        α1 micro1

        α2 micro2

        α3 micro3

        χ12

        δ1 η1

        δ2 η2

        δ3 η3χ33

        β33

        χ13

        β13

        χ22

        β32χ32

        β22

        χ23β23

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        ( ) ( )

        ( ) ( )( ) ( )

        ( ) ( )

        ( ) ( )( ) ( )

        3

        1 11

        3

        1 1 11

        1

        3

        2 21

        3

        2 2 21

        2

        3

        1 1 0 0 0 0 0 0 0 0

        1 1 1 1 0 0 0 0 0 0 0

        0 1 1 1 0 0 0 0 0 0

        0 0 0 1 1 0 0 0 0 0

        0 0 0 1 1 1 1 0 0 0 0

        0 0 0 0 1 1 1 0 0 0

        0 0 0 0 0 0 1

        i i

        i i

        i i

        i i

        I Di i

        i

        I Di i

        i

        I Di i

        i

        I Di i

        i

        β χ

        β χ α

        α δ η

        β χ

        β χ α

        α δ η

        β

        =

        =

        =

        =

        minus sdot minus

        minus minus sdot minus minus

        minus minus sdot minus

        minus sdot minus

        minus minus sdot minus minus

        minus minus sdot minus

        minus

        prod

        prod

        prod

        prod

        ( ) ( )

        ( ) ( )( ) ( )

        1

        1

        1

        2

        2

        2

        3

        33

        331

        3

        3 3 31

        3

        1 0 0

        0 0 0 0 0 0 1 1 1 1 0

        0 0 0 0 0 0 0 1 1 1

        i i

        i i

        I Di i

        i

        I Di i

        i

        SIDSIDSIDχ

        β χ α

        α δ η

        =

        =

        sdot

        sdot minus

        minus minus sdot minus minus minus minus sdot minus

        prod

        prod

        WSSV 3-host community matrix model

        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

        • Slide Number 1
        • Slide Number 2
        • Slide Number 3
        • Slide Number 4
        • Slide Number 5
        • Slide Number 6
        • Slide Number 7
        • Slide Number 8
        • Slide Number 9
        • Emergence of White spot syndrome virus
        • Slide Number 11
        • Slide Number 12
        • Slide Number 13
        • Hosts of WSSV
        • WSSV Litopenaeus vannamei
        • Slide Number 16
        • Slide Number 17
        • Slide Number 18
        • Slide Number 19
        • Slide Number 20
        • Slide Number 21
        • Slide Number 22
        • Slide Number 23
        • Slide Number 24
        • Slide Number 25
        • Slide Number 26
        • Slide Number 27
        • Slide Number 28
        • Slide Number 29
        • Slide Number 30
        • Slide Number 31
        • Slide Number 32
        • Slide Number 33
        • Slide Number 34
        • Slide Number 35
        • Slide Number 36
        • Slide Number 37
        • Slide Number 38

          Source FAO

          Worlds Production of Penaeid Shrimp

          AquacultureCaptureTotal

          0

          5

          10

          15

          1950 1970 1990 2010

          75

          25

          Poun

          ds (x

          109 )

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          Shrimp commodity production

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          Shrimp Aquaculture SpeciesLitopenaeus vannamei Penaeus monodon

          Marsupenaeus japonicusFenneropenaeus chinensis

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          050

          100150200250300350400450500

          1980 1985 1990 1995

          Year

          Mill

          ions

          of P

          ound

          s

          Production of Farmed Shrimp - China

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          19921994 1994 1998

          1996

          19932002

          200219971995

          1999

          19991999

          1999

          2005

          Spread of WSSV

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          Emergence of White spot syndrome virus

          1 km

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          1 Environment changes bringing new contactsMore shrimpPonds built in new areas ndash where shrimp never were or in low numbersMore contact between other (terrestrial) arthropods and shrimp

          2 Change in pathogen virulence

          3 Introduced from elsewhere

          Emergence of White spot syndrome virus

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          Source FAO

          Worlds Production of Penaeid Shrimp

          AquacultureCaptureTotal

          0

          5

          10

          15

          Poun

          ds (x

          109 )

          1950 1970 1990 2010

          75

          25

          Worlds Production of Penaeid Shrimp

          AquacultureCaptureTotal

          0

          5

          10

          15

          Poun

          ds (x

          109 )

          1950 1970 1990 2010

          75

          25

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          More shrimp ndash more placesGreater opportunity for contact between shrimp and other arthropods

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          Hosts of WSSV bull Shrimp

          ndash Penaeusbull monodonbull semisulcatus

          ndash Farfantepenaeusbull aztecusbull duorarum

          ndash Fenneropenaeusbull chinensisbull indicusbull merguensisbull penicillatus

          ndash Marsupenaeusbull japonicus

          ndash Litopenaeusbull vannameibull stylirostrisbull setiferus

          ndash Metapenaeus ensis

          ndash Exopalaemonbull orientalis

          ndash Macrobrachium sppndash Palaemon styliferuusndash Palaemonetes pugio

          bull Crabndash Calappa lophosndash Charybdis

          bull feriatabull natotor

          ndash Helice spndash Portunus

          bull pelagicusbull Sanguineolentus

          ndash Callinectes sapidus

          ndash Armasus cinereumndash Scylla serratandash Sesarma sppndash Sommanniathelpusa spndash Thalamita spndash Uca sppndash Menippe adina

          bull Lobsterndash Panuluris

          bull longipesbull ornatusbull argus

          bull Crayfishndash Procambarus clarkiindash Cherax quadricarinatus

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          0

          100

          200

          300

          400

          500

          600

          700

          800

          900

          1000

          0 3 6 9 12 15 18 21

          Num

          ber o

          f shr

          imp

          Day

          Weight 3 gDensity 550m3

          Dose 003 bwfinal survival 000 003max daily mortality 10 06

          WSSV Litopenaeus vannamei

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          Armasus cinereum

          Uca panacea

          Callinectes sapidus

          Litopenaeus setiferus

          Uca speciosa

          Local decapods exposed to WSSV (China)

          0 5 10 15 20 25 30Day

          00

          01

          02

          03

          04

          05

          06

          07

          08

          09

          10

          Surv

          ival

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          Salt marshes

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          Mississippi sound

          Jourdan

          Biloxi

          Pearl

          Wolf

          Lake Pontchartrain

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          Prevalence of WSSV in decapods of Ms Sound

          Blue crab (Callinectes sapidus) (83 n=12)

          Purple marsh crab (Sesarma reticulatum) (100 n=20)

          Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

          Panacea sand fiddler crab (U panacea) (108 n=1404)

          Mudflat fiddler crab (U rapax) (230 n=88)

          Spined fiddler crab (U spinicarpa) (357 n=98)

          Red-jointed fiddler crab (U minax) (227 n=22)

          Squareback marsh crab (Armasus cinereum) (267 n=30)

          Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

          White shrimp (Litopenaeus setiferus) (200 n=40)

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          Modeling WSSV in communities of decapods

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          WSSV life cycle diagram

          λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

          δ η

          Susceptible Infected Dead

          β

          χ

          λ

          micro

          α micro

          ( ) ( )( )( ) ( )( ) ( ) ( )( )

          ( ) ( )( ) ( ) ( )( )

          1

          1

          1

          1 1 1

          1 1 1 1 1 1

          1 1 1 1 1 1

          t t

          t t

          I Dt t t

          I Dt t t t

          t t t t

          S S S

          I I S I

          D D I D

          β χ λ micro

          β χ α micro

          α micro η δ

          +

          +

          +

          = minus sdot minus minus minus + minus

          = + sdot minus minus minus minus minus minus sdot minus sdot

          = + minus minus sdot minus sdot minus minus minus sdot minus sdot

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          ( )1-

          t t t tS S S Iβ

          += sdot sdot

          RossKermack-McKendrick

          1- (1 )(1 ) t

          t t tIS S S β+

          = sdot minus minusReed-Frost

          Black-Singer

          Transmission terms - Force of infection λprobability of infection after contact

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          ( )1 1 Iλ β= minus minus

          ( )Iλ β= sdot

          Force of InfectionProbability of infection after contact with all infecteds

          Ross

          Reed-Frost

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          1 2 3 4 5 6 7

          1 11 12 13 14 15 16 17

          2 21 22 23 24 25 26 27

          3 31 32 33 34 35 36 37

          S S S S S S S

          I SI SI SI SI SI SI SI

          I SI SI SI SI SI SI SI

          I SI SI SI SI SI SI SI

          ( )1-

          t t t tS S S Iβ

          += sdot sdot

          RossKermack-McKendrick

          If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

          May have more infects than susceptiblesSome transmissions are to the same susceptible

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          2(1 )βminus

          1 βminusβ 1 βminusβ

          21 (1 )βminus minus

          3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

          Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

          βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

          1- (1 )(1 ) t

          t t tIS S S β+

          = sdot minus minusReed-Frost

          Black-Singer

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          Epidemic models ndash parameter estimates

          ( ) ( )( )( ) ( )( )

          ( ) ( )( )

          1

          1

          1

          1 1 1

          1 1 1

          1 1 1

          t t

          t t

          I Dt t t

          I Dt t t t

          t t t t

          S S S

          I I S I

          D D I D

          β χ

          β χ α

          α η δ

          +

          +

          +

          = minus sdot minus minus minus

          = + sdot minus minus minus minus sdot

          = + sdot minus minus minus sdot minus sdot

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          If t = 1 and I0 = 1

          1

          0

          1 ss

          β

          = minus

          The proportion infected after exposure to one infected shrimpβ

          Parameter estimates ndash transmission (β χ)

          1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

          Solve for β

          1

          1

          0

          0

          ln(1) 1 exp

          tSS

          = minus

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          Parameter estimates ndash transmission (β χ)

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          Parameter estimates ndash transmission (β χ)

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          Parameter estimates ndash transmission (β χ)

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

          Parameter estimates ndash transmission (β χ) and virulence (α)

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          1t t tI I I α+ = minus sdot

          0

          10

          20

          30

          40

          0 4 8 12 16Time (h)

          Surv

          ival

          Parameter estimates ndash virulence (α)

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          decomposition

          transmission decreases by 48 per day

          y-intercept = 0499

          0 4 8 12Days after death

          00

          02

          04

          06

          08

          10

          Tran

          smis

          sion

          χ

          Parameter estimates ndash decay of transmission (δ)

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          Parameter estimates η consumption of shrimp

          24 shrimp12 shrimp

          6 shrimp1 shrimp

          FedFasted

          decrease per hr (day) decrease per hr (day)

          0 10 20 30Time (hr)

          00

          02

          04

          06

          08

          10

          Prop

          ortio

          n B

          iom

          ass

          0 10 20 300 10 20 300 10 20 300 10 20 30

          10

          0 10 20 30Time (hr)

          00

          02

          04

          06

          08

          Prop

          ortio

          n B

          iom

          ass

          0 10 20 300 10 20 300 10 20 300 10 20 30

          17 (99)30 (100)34 (100)33 (100)

          6 (79)11 (94)11 (94)12 (96)

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          Parameter estimates consumption (η) amp decomposition (δ) combined

          048 + 100 - 10 048= 100

          048 + 79 - 7948= 089

          An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          State Duration Transmission Product

          Live Infected β

          Dead Infected χ( )( )

          11 1 1δ ηminus minus minus

          βα

          ( )( )1 1 1χδ ηminus minus minus

          0R β χα δ η δ η

          = ++ minus sdot

          Life table of infection

          001 06 0904 05 09 05 09

          R = + =+ minus sdot

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          WSSV life cycle diagram3-host community

          Susceptible

          Susceptible

          Susceptible Infected

          Infected

          Infected Dead

          Dead

          Dead

          β31

          χ31

          χ11

          β11λ1

          λ2

          λ3

          micro1

          micro2

          micro3

          β12 β21 χ21

          α1 micro1

          α2 micro2

          α3 micro3

          χ12

          δ1 η1

          δ2 η2

          δ3 η3χ33

          β33

          χ13

          β13

          χ22

          β32χ32

          β22

          χ23β23

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          ( ) ( )

          ( ) ( )( ) ( )

          ( ) ( )

          ( ) ( )( ) ( )

          3

          1 11

          3

          1 1 11

          1

          3

          2 21

          3

          2 2 21

          2

          3

          1 1 0 0 0 0 0 0 0 0

          1 1 1 1 0 0 0 0 0 0 0

          0 1 1 1 0 0 0 0 0 0

          0 0 0 1 1 0 0 0 0 0

          0 0 0 1 1 1 1 0 0 0 0

          0 0 0 0 1 1 1 0 0 0

          0 0 0 0 0 0 1

          i i

          i i

          i i

          i i

          I Di i

          i

          I Di i

          i

          I Di i

          i

          I Di i

          i

          β χ

          β χ α

          α δ η

          β χ

          β χ α

          α δ η

          β

          =

          =

          =

          =

          minus sdot minus

          minus minus sdot minus minus

          minus minus sdot minus

          minus sdot minus

          minus minus sdot minus minus

          minus minus sdot minus

          minus

          prod

          prod

          prod

          prod

          ( ) ( )

          ( ) ( )( ) ( )

          1

          1

          1

          2

          2

          2

          3

          33

          331

          3

          3 3 31

          3

          1 0 0

          0 0 0 0 0 0 1 1 1 1 0

          0 0 0 0 0 0 0 1 1 1

          i i

          i i

          I Di i

          i

          I Di i

          i

          SIDSIDSIDχ

          β χ α

          α δ η

          =

          =

          sdot

          sdot minus

          minus minus sdot minus minus minus minus sdot minus

          prod

          prod

          WSSV 3-host community matrix model

          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

          • Slide Number 1
          • Slide Number 2
          • Slide Number 3
          • Slide Number 4
          • Slide Number 5
          • Slide Number 6
          • Slide Number 7
          • Slide Number 8
          • Slide Number 9
          • Emergence of White spot syndrome virus
          • Slide Number 11
          • Slide Number 12
          • Slide Number 13
          • Hosts of WSSV
          • WSSV Litopenaeus vannamei
          • Slide Number 16
          • Slide Number 17
          • Slide Number 18
          • Slide Number 19
          • Slide Number 20
          • Slide Number 21
          • Slide Number 22
          • Slide Number 23
          • Slide Number 24
          • Slide Number 25
          • Slide Number 26
          • Slide Number 27
          • Slide Number 28
          • Slide Number 29
          • Slide Number 30
          • Slide Number 31
          • Slide Number 32
          • Slide Number 33
          • Slide Number 34
          • Slide Number 35
          • Slide Number 36
          • Slide Number 37
          • Slide Number 38

            Shrimp commodity production

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            Shrimp Aquaculture SpeciesLitopenaeus vannamei Penaeus monodon

            Marsupenaeus japonicusFenneropenaeus chinensis

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            050

            100150200250300350400450500

            1980 1985 1990 1995

            Year

            Mill

            ions

            of P

            ound

            s

            Production of Farmed Shrimp - China

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            19921994 1994 1998

            1996

            19932002

            200219971995

            1999

            19991999

            1999

            2005

            Spread of WSSV

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            Emergence of White spot syndrome virus

            1 km

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            1 Environment changes bringing new contactsMore shrimpPonds built in new areas ndash where shrimp never were or in low numbersMore contact between other (terrestrial) arthropods and shrimp

            2 Change in pathogen virulence

            3 Introduced from elsewhere

            Emergence of White spot syndrome virus

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            Source FAO

            Worlds Production of Penaeid Shrimp

            AquacultureCaptureTotal

            0

            5

            10

            15

            Poun

            ds (x

            109 )

            1950 1970 1990 2010

            75

            25

            Worlds Production of Penaeid Shrimp

            AquacultureCaptureTotal

            0

            5

            10

            15

            Poun

            ds (x

            109 )

            1950 1970 1990 2010

            75

            25

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            More shrimp ndash more placesGreater opportunity for contact between shrimp and other arthropods

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            Hosts of WSSV bull Shrimp

            ndash Penaeusbull monodonbull semisulcatus

            ndash Farfantepenaeusbull aztecusbull duorarum

            ndash Fenneropenaeusbull chinensisbull indicusbull merguensisbull penicillatus

            ndash Marsupenaeusbull japonicus

            ndash Litopenaeusbull vannameibull stylirostrisbull setiferus

            ndash Metapenaeus ensis

            ndash Exopalaemonbull orientalis

            ndash Macrobrachium sppndash Palaemon styliferuusndash Palaemonetes pugio

            bull Crabndash Calappa lophosndash Charybdis

            bull feriatabull natotor

            ndash Helice spndash Portunus

            bull pelagicusbull Sanguineolentus

            ndash Callinectes sapidus

            ndash Armasus cinereumndash Scylla serratandash Sesarma sppndash Sommanniathelpusa spndash Thalamita spndash Uca sppndash Menippe adina

            bull Lobsterndash Panuluris

            bull longipesbull ornatusbull argus

            bull Crayfishndash Procambarus clarkiindash Cherax quadricarinatus

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            0

            100

            200

            300

            400

            500

            600

            700

            800

            900

            1000

            0 3 6 9 12 15 18 21

            Num

            ber o

            f shr

            imp

            Day

            Weight 3 gDensity 550m3

            Dose 003 bwfinal survival 000 003max daily mortality 10 06

            WSSV Litopenaeus vannamei

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            Armasus cinereum

            Uca panacea

            Callinectes sapidus

            Litopenaeus setiferus

            Uca speciosa

            Local decapods exposed to WSSV (China)

            0 5 10 15 20 25 30Day

            00

            01

            02

            03

            04

            05

            06

            07

            08

            09

            10

            Surv

            ival

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            Salt marshes

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            Mississippi sound

            Jourdan

            Biloxi

            Pearl

            Wolf

            Lake Pontchartrain

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            Prevalence of WSSV in decapods of Ms Sound

            Blue crab (Callinectes sapidus) (83 n=12)

            Purple marsh crab (Sesarma reticulatum) (100 n=20)

            Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

            Panacea sand fiddler crab (U panacea) (108 n=1404)

            Mudflat fiddler crab (U rapax) (230 n=88)

            Spined fiddler crab (U spinicarpa) (357 n=98)

            Red-jointed fiddler crab (U minax) (227 n=22)

            Squareback marsh crab (Armasus cinereum) (267 n=30)

            Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

            White shrimp (Litopenaeus setiferus) (200 n=40)

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            Modeling WSSV in communities of decapods

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            WSSV life cycle diagram

            λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

            δ η

            Susceptible Infected Dead

            β

            χ

            λ

            micro

            α micro

            ( ) ( )( )( ) ( )( ) ( ) ( )( )

            ( ) ( )( ) ( ) ( )( )

            1

            1

            1

            1 1 1

            1 1 1 1 1 1

            1 1 1 1 1 1

            t t

            t t

            I Dt t t

            I Dt t t t

            t t t t

            S S S

            I I S I

            D D I D

            β χ λ micro

            β χ α micro

            α micro η δ

            +

            +

            +

            = minus sdot minus minus minus + minus

            = + sdot minus minus minus minus minus minus sdot minus sdot

            = + minus minus sdot minus sdot minus minus minus sdot minus sdot

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            ( )1-

            t t t tS S S Iβ

            += sdot sdot

            RossKermack-McKendrick

            1- (1 )(1 ) t

            t t tIS S S β+

            = sdot minus minusReed-Frost

            Black-Singer

            Transmission terms - Force of infection λprobability of infection after contact

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            ( )1 1 Iλ β= minus minus

            ( )Iλ β= sdot

            Force of InfectionProbability of infection after contact with all infecteds

            Ross

            Reed-Frost

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            1 2 3 4 5 6 7

            1 11 12 13 14 15 16 17

            2 21 22 23 24 25 26 27

            3 31 32 33 34 35 36 37

            S S S S S S S

            I SI SI SI SI SI SI SI

            I SI SI SI SI SI SI SI

            I SI SI SI SI SI SI SI

            ( )1-

            t t t tS S S Iβ

            += sdot sdot

            RossKermack-McKendrick

            If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

            May have more infects than susceptiblesSome transmissions are to the same susceptible

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            2(1 )βminus

            1 βminusβ 1 βminusβ

            21 (1 )βminus minus

            3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

            Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

            βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

            1- (1 )(1 ) t

            t t tIS S S β+

            = sdot minus minusReed-Frost

            Black-Singer

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            Epidemic models ndash parameter estimates

            ( ) ( )( )( ) ( )( )

            ( ) ( )( )

            1

            1

            1

            1 1 1

            1 1 1

            1 1 1

            t t

            t t

            I Dt t t

            I Dt t t t

            t t t t

            S S S

            I I S I

            D D I D

            β χ

            β χ α

            α η δ

            +

            +

            +

            = minus sdot minus minus minus

            = + sdot minus minus minus minus sdot

            = + sdot minus minus minus sdot minus sdot

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            If t = 1 and I0 = 1

            1

            0

            1 ss

            β

            = minus

            The proportion infected after exposure to one infected shrimpβ

            Parameter estimates ndash transmission (β χ)

            1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

            Solve for β

            1

            1

            0

            0

            ln(1) 1 exp

            tSS

            = minus

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            Parameter estimates ndash transmission (β χ)

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            Parameter estimates ndash transmission (β χ)

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            Parameter estimates ndash transmission (β χ)

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

            Parameter estimates ndash transmission (β χ) and virulence (α)

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            1t t tI I I α+ = minus sdot

            0

            10

            20

            30

            40

            0 4 8 12 16Time (h)

            Surv

            ival

            Parameter estimates ndash virulence (α)

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            decomposition

            transmission decreases by 48 per day

            y-intercept = 0499

            0 4 8 12Days after death

            00

            02

            04

            06

            08

            10

            Tran

            smis

            sion

            χ

            Parameter estimates ndash decay of transmission (δ)

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            Parameter estimates η consumption of shrimp

            24 shrimp12 shrimp

            6 shrimp1 shrimp

            FedFasted

            decrease per hr (day) decrease per hr (day)

            0 10 20 30Time (hr)

            00

            02

            04

            06

            08

            10

            Prop

            ortio

            n B

            iom

            ass

            0 10 20 300 10 20 300 10 20 300 10 20 30

            10

            0 10 20 30Time (hr)

            00

            02

            04

            06

            08

            Prop

            ortio

            n B

            iom

            ass

            0 10 20 300 10 20 300 10 20 300 10 20 30

            17 (99)30 (100)34 (100)33 (100)

            6 (79)11 (94)11 (94)12 (96)

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            Parameter estimates consumption (η) amp decomposition (δ) combined

            048 + 100 - 10 048= 100

            048 + 79 - 7948= 089

            An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            State Duration Transmission Product

            Live Infected β

            Dead Infected χ( )( )

            11 1 1δ ηminus minus minus

            βα

            ( )( )1 1 1χδ ηminus minus minus

            0R β χα δ η δ η

            = ++ minus sdot

            Life table of infection

            001 06 0904 05 09 05 09

            R = + =+ minus sdot

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            WSSV life cycle diagram3-host community

            Susceptible

            Susceptible

            Susceptible Infected

            Infected

            Infected Dead

            Dead

            Dead

            β31

            χ31

            χ11

            β11λ1

            λ2

            λ3

            micro1

            micro2

            micro3

            β12 β21 χ21

            α1 micro1

            α2 micro2

            α3 micro3

            χ12

            δ1 η1

            δ2 η2

            δ3 η3χ33

            β33

            χ13

            β13

            χ22

            β32χ32

            β22

            χ23β23

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            ( ) ( )

            ( ) ( )( ) ( )

            ( ) ( )

            ( ) ( )( ) ( )

            3

            1 11

            3

            1 1 11

            1

            3

            2 21

            3

            2 2 21

            2

            3

            1 1 0 0 0 0 0 0 0 0

            1 1 1 1 0 0 0 0 0 0 0

            0 1 1 1 0 0 0 0 0 0

            0 0 0 1 1 0 0 0 0 0

            0 0 0 1 1 1 1 0 0 0 0

            0 0 0 0 1 1 1 0 0 0

            0 0 0 0 0 0 1

            i i

            i i

            i i

            i i

            I Di i

            i

            I Di i

            i

            I Di i

            i

            I Di i

            i

            β χ

            β χ α

            α δ η

            β χ

            β χ α

            α δ η

            β

            =

            =

            =

            =

            minus sdot minus

            minus minus sdot minus minus

            minus minus sdot minus

            minus sdot minus

            minus minus sdot minus minus

            minus minus sdot minus

            minus

            prod

            prod

            prod

            prod

            ( ) ( )

            ( ) ( )( ) ( )

            1

            1

            1

            2

            2

            2

            3

            33

            331

            3

            3 3 31

            3

            1 0 0

            0 0 0 0 0 0 1 1 1 1 0

            0 0 0 0 0 0 0 1 1 1

            i i

            i i

            I Di i

            i

            I Di i

            i

            SIDSIDSIDχ

            β χ α

            α δ η

            =

            =

            sdot

            sdot minus

            minus minus sdot minus minus minus minus sdot minus

            prod

            prod

            WSSV 3-host community matrix model

            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

            • Slide Number 1
            • Slide Number 2
            • Slide Number 3
            • Slide Number 4
            • Slide Number 5
            • Slide Number 6
            • Slide Number 7
            • Slide Number 8
            • Slide Number 9
            • Emergence of White spot syndrome virus
            • Slide Number 11
            • Slide Number 12
            • Slide Number 13
            • Hosts of WSSV
            • WSSV Litopenaeus vannamei
            • Slide Number 16
            • Slide Number 17
            • Slide Number 18
            • Slide Number 19
            • Slide Number 20
            • Slide Number 21
            • Slide Number 22
            • Slide Number 23
            • Slide Number 24
            • Slide Number 25
            • Slide Number 26
            • Slide Number 27
            • Slide Number 28
            • Slide Number 29
            • Slide Number 30
            • Slide Number 31
            • Slide Number 32
            • Slide Number 33
            • Slide Number 34
            • Slide Number 35
            • Slide Number 36
            • Slide Number 37
            • Slide Number 38

              Shrimp Aquaculture SpeciesLitopenaeus vannamei Penaeus monodon

              Marsupenaeus japonicusFenneropenaeus chinensis

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              050

              100150200250300350400450500

              1980 1985 1990 1995

              Year

              Mill

              ions

              of P

              ound

              s

              Production of Farmed Shrimp - China

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              19921994 1994 1998

              1996

              19932002

              200219971995

              1999

              19991999

              1999

              2005

              Spread of WSSV

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              Emergence of White spot syndrome virus

              1 km

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              1 Environment changes bringing new contactsMore shrimpPonds built in new areas ndash where shrimp never were or in low numbersMore contact between other (terrestrial) arthropods and shrimp

              2 Change in pathogen virulence

              3 Introduced from elsewhere

              Emergence of White spot syndrome virus

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              Source FAO

              Worlds Production of Penaeid Shrimp

              AquacultureCaptureTotal

              0

              5

              10

              15

              Poun

              ds (x

              109 )

              1950 1970 1990 2010

              75

              25

              Worlds Production of Penaeid Shrimp

              AquacultureCaptureTotal

              0

              5

              10

              15

              Poun

              ds (x

              109 )

              1950 1970 1990 2010

              75

              25

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              More shrimp ndash more placesGreater opportunity for contact between shrimp and other arthropods

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              Hosts of WSSV bull Shrimp

              ndash Penaeusbull monodonbull semisulcatus

              ndash Farfantepenaeusbull aztecusbull duorarum

              ndash Fenneropenaeusbull chinensisbull indicusbull merguensisbull penicillatus

              ndash Marsupenaeusbull japonicus

              ndash Litopenaeusbull vannameibull stylirostrisbull setiferus

              ndash Metapenaeus ensis

              ndash Exopalaemonbull orientalis

              ndash Macrobrachium sppndash Palaemon styliferuusndash Palaemonetes pugio

              bull Crabndash Calappa lophosndash Charybdis

              bull feriatabull natotor

              ndash Helice spndash Portunus

              bull pelagicusbull Sanguineolentus

              ndash Callinectes sapidus

              ndash Armasus cinereumndash Scylla serratandash Sesarma sppndash Sommanniathelpusa spndash Thalamita spndash Uca sppndash Menippe adina

              bull Lobsterndash Panuluris

              bull longipesbull ornatusbull argus

              bull Crayfishndash Procambarus clarkiindash Cherax quadricarinatus

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              0

              100

              200

              300

              400

              500

              600

              700

              800

              900

              1000

              0 3 6 9 12 15 18 21

              Num

              ber o

              f shr

              imp

              Day

              Weight 3 gDensity 550m3

              Dose 003 bwfinal survival 000 003max daily mortality 10 06

              WSSV Litopenaeus vannamei

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              Armasus cinereum

              Uca panacea

              Callinectes sapidus

              Litopenaeus setiferus

              Uca speciosa

              Local decapods exposed to WSSV (China)

              0 5 10 15 20 25 30Day

              00

              01

              02

              03

              04

              05

              06

              07

              08

              09

              10

              Surv

              ival

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              Salt marshes

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              Mississippi sound

              Jourdan

              Biloxi

              Pearl

              Wolf

              Lake Pontchartrain

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              Prevalence of WSSV in decapods of Ms Sound

              Blue crab (Callinectes sapidus) (83 n=12)

              Purple marsh crab (Sesarma reticulatum) (100 n=20)

              Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

              Panacea sand fiddler crab (U panacea) (108 n=1404)

              Mudflat fiddler crab (U rapax) (230 n=88)

              Spined fiddler crab (U spinicarpa) (357 n=98)

              Red-jointed fiddler crab (U minax) (227 n=22)

              Squareback marsh crab (Armasus cinereum) (267 n=30)

              Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

              White shrimp (Litopenaeus setiferus) (200 n=40)

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              Modeling WSSV in communities of decapods

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              WSSV life cycle diagram

              λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

              δ η

              Susceptible Infected Dead

              β

              χ

              λ

              micro

              α micro

              ( ) ( )( )( ) ( )( ) ( ) ( )( )

              ( ) ( )( ) ( ) ( )( )

              1

              1

              1

              1 1 1

              1 1 1 1 1 1

              1 1 1 1 1 1

              t t

              t t

              I Dt t t

              I Dt t t t

              t t t t

              S S S

              I I S I

              D D I D

              β χ λ micro

              β χ α micro

              α micro η δ

              +

              +

              +

              = minus sdot minus minus minus + minus

              = + sdot minus minus minus minus minus minus sdot minus sdot

              = + minus minus sdot minus sdot minus minus minus sdot minus sdot

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              ( )1-

              t t t tS S S Iβ

              += sdot sdot

              RossKermack-McKendrick

              1- (1 )(1 ) t

              t t tIS S S β+

              = sdot minus minusReed-Frost

              Black-Singer

              Transmission terms - Force of infection λprobability of infection after contact

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              ( )1 1 Iλ β= minus minus

              ( )Iλ β= sdot

              Force of InfectionProbability of infection after contact with all infecteds

              Ross

              Reed-Frost

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              1 2 3 4 5 6 7

              1 11 12 13 14 15 16 17

              2 21 22 23 24 25 26 27

              3 31 32 33 34 35 36 37

              S S S S S S S

              I SI SI SI SI SI SI SI

              I SI SI SI SI SI SI SI

              I SI SI SI SI SI SI SI

              ( )1-

              t t t tS S S Iβ

              += sdot sdot

              RossKermack-McKendrick

              If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

              May have more infects than susceptiblesSome transmissions are to the same susceptible

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              2(1 )βminus

              1 βminusβ 1 βminusβ

              21 (1 )βminus minus

              3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

              Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

              βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

              1- (1 )(1 ) t

              t t tIS S S β+

              = sdot minus minusReed-Frost

              Black-Singer

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              Epidemic models ndash parameter estimates

              ( ) ( )( )( ) ( )( )

              ( ) ( )( )

              1

              1

              1

              1 1 1

              1 1 1

              1 1 1

              t t

              t t

              I Dt t t

              I Dt t t t

              t t t t

              S S S

              I I S I

              D D I D

              β χ

              β χ α

              α η δ

              +

              +

              +

              = minus sdot minus minus minus

              = + sdot minus minus minus minus sdot

              = + sdot minus minus minus sdot minus sdot

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              If t = 1 and I0 = 1

              1

              0

              1 ss

              β

              = minus

              The proportion infected after exposure to one infected shrimpβ

              Parameter estimates ndash transmission (β χ)

              1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

              Solve for β

              1

              1

              0

              0

              ln(1) 1 exp

              tSS

              = minus

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              Parameter estimates ndash transmission (β χ)

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              Parameter estimates ndash transmission (β χ)

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              Parameter estimates ndash transmission (β χ)

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

              Parameter estimates ndash transmission (β χ) and virulence (α)

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              1t t tI I I α+ = minus sdot

              0

              10

              20

              30

              40

              0 4 8 12 16Time (h)

              Surv

              ival

              Parameter estimates ndash virulence (α)

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              decomposition

              transmission decreases by 48 per day

              y-intercept = 0499

              0 4 8 12Days after death

              00

              02

              04

              06

              08

              10

              Tran

              smis

              sion

              χ

              Parameter estimates ndash decay of transmission (δ)

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              Parameter estimates η consumption of shrimp

              24 shrimp12 shrimp

              6 shrimp1 shrimp

              FedFasted

              decrease per hr (day) decrease per hr (day)

              0 10 20 30Time (hr)

              00

              02

              04

              06

              08

              10

              Prop

              ortio

              n B

              iom

              ass

              0 10 20 300 10 20 300 10 20 300 10 20 30

              10

              0 10 20 30Time (hr)

              00

              02

              04

              06

              08

              Prop

              ortio

              n B

              iom

              ass

              0 10 20 300 10 20 300 10 20 300 10 20 30

              17 (99)30 (100)34 (100)33 (100)

              6 (79)11 (94)11 (94)12 (96)

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              Parameter estimates consumption (η) amp decomposition (δ) combined

              048 + 100 - 10 048= 100

              048 + 79 - 7948= 089

              An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              State Duration Transmission Product

              Live Infected β

              Dead Infected χ( )( )

              11 1 1δ ηminus minus minus

              βα

              ( )( )1 1 1χδ ηminus minus minus

              0R β χα δ η δ η

              = ++ minus sdot

              Life table of infection

              001 06 0904 05 09 05 09

              R = + =+ minus sdot

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              WSSV life cycle diagram3-host community

              Susceptible

              Susceptible

              Susceptible Infected

              Infected

              Infected Dead

              Dead

              Dead

              β31

              χ31

              χ11

              β11λ1

              λ2

              λ3

              micro1

              micro2

              micro3

              β12 β21 χ21

              α1 micro1

              α2 micro2

              α3 micro3

              χ12

              δ1 η1

              δ2 η2

              δ3 η3χ33

              β33

              χ13

              β13

              χ22

              β32χ32

              β22

              χ23β23

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              ( ) ( )

              ( ) ( )( ) ( )

              ( ) ( )

              ( ) ( )( ) ( )

              3

              1 11

              3

              1 1 11

              1

              3

              2 21

              3

              2 2 21

              2

              3

              1 1 0 0 0 0 0 0 0 0

              1 1 1 1 0 0 0 0 0 0 0

              0 1 1 1 0 0 0 0 0 0

              0 0 0 1 1 0 0 0 0 0

              0 0 0 1 1 1 1 0 0 0 0

              0 0 0 0 1 1 1 0 0 0

              0 0 0 0 0 0 1

              i i

              i i

              i i

              i i

              I Di i

              i

              I Di i

              i

              I Di i

              i

              I Di i

              i

              β χ

              β χ α

              α δ η

              β χ

              β χ α

              α δ η

              β

              =

              =

              =

              =

              minus sdot minus

              minus minus sdot minus minus

              minus minus sdot minus

              minus sdot minus

              minus minus sdot minus minus

              minus minus sdot minus

              minus

              prod

              prod

              prod

              prod

              ( ) ( )

              ( ) ( )( ) ( )

              1

              1

              1

              2

              2

              2

              3

              33

              331

              3

              3 3 31

              3

              1 0 0

              0 0 0 0 0 0 1 1 1 1 0

              0 0 0 0 0 0 0 1 1 1

              i i

              i i

              I Di i

              i

              I Di i

              i

              SIDSIDSIDχ

              β χ α

              α δ η

              =

              =

              sdot

              sdot minus

              minus minus sdot minus minus minus minus sdot minus

              prod

              prod

              WSSV 3-host community matrix model

              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

              • Slide Number 1
              • Slide Number 2
              • Slide Number 3
              • Slide Number 4
              • Slide Number 5
              • Slide Number 6
              • Slide Number 7
              • Slide Number 8
              • Slide Number 9
              • Emergence of White spot syndrome virus
              • Slide Number 11
              • Slide Number 12
              • Slide Number 13
              • Hosts of WSSV
              • WSSV Litopenaeus vannamei
              • Slide Number 16
              • Slide Number 17
              • Slide Number 18
              • Slide Number 19
              • Slide Number 20
              • Slide Number 21
              • Slide Number 22
              • Slide Number 23
              • Slide Number 24
              • Slide Number 25
              • Slide Number 26
              • Slide Number 27
              • Slide Number 28
              • Slide Number 29
              • Slide Number 30
              • Slide Number 31
              • Slide Number 32
              • Slide Number 33
              • Slide Number 34
              • Slide Number 35
              • Slide Number 36
              • Slide Number 37
              • Slide Number 38

                050

                100150200250300350400450500

                1980 1985 1990 1995

                Year

                Mill

                ions

                of P

                ound

                s

                Production of Farmed Shrimp - China

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                19921994 1994 1998

                1996

                19932002

                200219971995

                1999

                19991999

                1999

                2005

                Spread of WSSV

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                Emergence of White spot syndrome virus

                1 km

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                1 Environment changes bringing new contactsMore shrimpPonds built in new areas ndash where shrimp never were or in low numbersMore contact between other (terrestrial) arthropods and shrimp

                2 Change in pathogen virulence

                3 Introduced from elsewhere

                Emergence of White spot syndrome virus

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                Source FAO

                Worlds Production of Penaeid Shrimp

                AquacultureCaptureTotal

                0

                5

                10

                15

                Poun

                ds (x

                109 )

                1950 1970 1990 2010

                75

                25

                Worlds Production of Penaeid Shrimp

                AquacultureCaptureTotal

                0

                5

                10

                15

                Poun

                ds (x

                109 )

                1950 1970 1990 2010

                75

                25

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                More shrimp ndash more placesGreater opportunity for contact between shrimp and other arthropods

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                Hosts of WSSV bull Shrimp

                ndash Penaeusbull monodonbull semisulcatus

                ndash Farfantepenaeusbull aztecusbull duorarum

                ndash Fenneropenaeusbull chinensisbull indicusbull merguensisbull penicillatus

                ndash Marsupenaeusbull japonicus

                ndash Litopenaeusbull vannameibull stylirostrisbull setiferus

                ndash Metapenaeus ensis

                ndash Exopalaemonbull orientalis

                ndash Macrobrachium sppndash Palaemon styliferuusndash Palaemonetes pugio

                bull Crabndash Calappa lophosndash Charybdis

                bull feriatabull natotor

                ndash Helice spndash Portunus

                bull pelagicusbull Sanguineolentus

                ndash Callinectes sapidus

                ndash Armasus cinereumndash Scylla serratandash Sesarma sppndash Sommanniathelpusa spndash Thalamita spndash Uca sppndash Menippe adina

                bull Lobsterndash Panuluris

                bull longipesbull ornatusbull argus

                bull Crayfishndash Procambarus clarkiindash Cherax quadricarinatus

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                0

                100

                200

                300

                400

                500

                600

                700

                800

                900

                1000

                0 3 6 9 12 15 18 21

                Num

                ber o

                f shr

                imp

                Day

                Weight 3 gDensity 550m3

                Dose 003 bwfinal survival 000 003max daily mortality 10 06

                WSSV Litopenaeus vannamei

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                Armasus cinereum

                Uca panacea

                Callinectes sapidus

                Litopenaeus setiferus

                Uca speciosa

                Local decapods exposed to WSSV (China)

                0 5 10 15 20 25 30Day

                00

                01

                02

                03

                04

                05

                06

                07

                08

                09

                10

                Surv

                ival

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                Salt marshes

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                Mississippi sound

                Jourdan

                Biloxi

                Pearl

                Wolf

                Lake Pontchartrain

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                Prevalence of WSSV in decapods of Ms Sound

                Blue crab (Callinectes sapidus) (83 n=12)

                Purple marsh crab (Sesarma reticulatum) (100 n=20)

                Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

                Panacea sand fiddler crab (U panacea) (108 n=1404)

                Mudflat fiddler crab (U rapax) (230 n=88)

                Spined fiddler crab (U spinicarpa) (357 n=98)

                Red-jointed fiddler crab (U minax) (227 n=22)

                Squareback marsh crab (Armasus cinereum) (267 n=30)

                Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

                White shrimp (Litopenaeus setiferus) (200 n=40)

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                Modeling WSSV in communities of decapods

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                WSSV life cycle diagram

                λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

                δ η

                Susceptible Infected Dead

                β

                χ

                λ

                micro

                α micro

                ( ) ( )( )( ) ( )( ) ( ) ( )( )

                ( ) ( )( ) ( ) ( )( )

                1

                1

                1

                1 1 1

                1 1 1 1 1 1

                1 1 1 1 1 1

                t t

                t t

                I Dt t t

                I Dt t t t

                t t t t

                S S S

                I I S I

                D D I D

                β χ λ micro

                β χ α micro

                α micro η δ

                +

                +

                +

                = minus sdot minus minus minus + minus

                = + sdot minus minus minus minus minus minus sdot minus sdot

                = + minus minus sdot minus sdot minus minus minus sdot minus sdot

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                ( )1-

                t t t tS S S Iβ

                += sdot sdot

                RossKermack-McKendrick

                1- (1 )(1 ) t

                t t tIS S S β+

                = sdot minus minusReed-Frost

                Black-Singer

                Transmission terms - Force of infection λprobability of infection after contact

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                ( )1 1 Iλ β= minus minus

                ( )Iλ β= sdot

                Force of InfectionProbability of infection after contact with all infecteds

                Ross

                Reed-Frost

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                1 2 3 4 5 6 7

                1 11 12 13 14 15 16 17

                2 21 22 23 24 25 26 27

                3 31 32 33 34 35 36 37

                S S S S S S S

                I SI SI SI SI SI SI SI

                I SI SI SI SI SI SI SI

                I SI SI SI SI SI SI SI

                ( )1-

                t t t tS S S Iβ

                += sdot sdot

                RossKermack-McKendrick

                If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                May have more infects than susceptiblesSome transmissions are to the same susceptible

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                2(1 )βminus

                1 βminusβ 1 βminusβ

                21 (1 )βminus minus

                3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                1- (1 )(1 ) t

                t t tIS S S β+

                = sdot minus minusReed-Frost

                Black-Singer

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                Epidemic models ndash parameter estimates

                ( ) ( )( )( ) ( )( )

                ( ) ( )( )

                1

                1

                1

                1 1 1

                1 1 1

                1 1 1

                t t

                t t

                I Dt t t

                I Dt t t t

                t t t t

                S S S

                I I S I

                D D I D

                β χ

                β χ α

                α η δ

                +

                +

                +

                = minus sdot minus minus minus

                = + sdot minus minus minus minus sdot

                = + sdot minus minus minus sdot minus sdot

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                If t = 1 and I0 = 1

                1

                0

                1 ss

                β

                = minus

                The proportion infected after exposure to one infected shrimpβ

                Parameter estimates ndash transmission (β χ)

                1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                Solve for β

                1

                1

                0

                0

                ln(1) 1 exp

                tSS

                = minus

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                Parameter estimates ndash transmission (β χ)

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                Parameter estimates ndash transmission (β χ)

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                Parameter estimates ndash transmission (β χ)

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                Parameter estimates ndash transmission (β χ) and virulence (α)

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                1t t tI I I α+ = minus sdot

                0

                10

                20

                30

                40

                0 4 8 12 16Time (h)

                Surv

                ival

                Parameter estimates ndash virulence (α)

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                decomposition

                transmission decreases by 48 per day

                y-intercept = 0499

                0 4 8 12Days after death

                00

                02

                04

                06

                08

                10

                Tran

                smis

                sion

                χ

                Parameter estimates ndash decay of transmission (δ)

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                Parameter estimates η consumption of shrimp

                24 shrimp12 shrimp

                6 shrimp1 shrimp

                FedFasted

                decrease per hr (day) decrease per hr (day)

                0 10 20 30Time (hr)

                00

                02

                04

                06

                08

                10

                Prop

                ortio

                n B

                iom

                ass

                0 10 20 300 10 20 300 10 20 300 10 20 30

                10

                0 10 20 30Time (hr)

                00

                02

                04

                06

                08

                Prop

                ortio

                n B

                iom

                ass

                0 10 20 300 10 20 300 10 20 300 10 20 30

                17 (99)30 (100)34 (100)33 (100)

                6 (79)11 (94)11 (94)12 (96)

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                Parameter estimates consumption (η) amp decomposition (δ) combined

                048 + 100 - 10 048= 100

                048 + 79 - 7948= 089

                An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                State Duration Transmission Product

                Live Infected β

                Dead Infected χ( )( )

                11 1 1δ ηminus minus minus

                βα

                ( )( )1 1 1χδ ηminus minus minus

                0R β χα δ η δ η

                = ++ minus sdot

                Life table of infection

                001 06 0904 05 09 05 09

                R = + =+ minus sdot

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                WSSV life cycle diagram3-host community

                Susceptible

                Susceptible

                Susceptible Infected

                Infected

                Infected Dead

                Dead

                Dead

                β31

                χ31

                χ11

                β11λ1

                λ2

                λ3

                micro1

                micro2

                micro3

                β12 β21 χ21

                α1 micro1

                α2 micro2

                α3 micro3

                χ12

                δ1 η1

                δ2 η2

                δ3 η3χ33

                β33

                χ13

                β13

                χ22

                β32χ32

                β22

                χ23β23

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                ( ) ( )

                ( ) ( )( ) ( )

                ( ) ( )

                ( ) ( )( ) ( )

                3

                1 11

                3

                1 1 11

                1

                3

                2 21

                3

                2 2 21

                2

                3

                1 1 0 0 0 0 0 0 0 0

                1 1 1 1 0 0 0 0 0 0 0

                0 1 1 1 0 0 0 0 0 0

                0 0 0 1 1 0 0 0 0 0

                0 0 0 1 1 1 1 0 0 0 0

                0 0 0 0 1 1 1 0 0 0

                0 0 0 0 0 0 1

                i i

                i i

                i i

                i i

                I Di i

                i

                I Di i

                i

                I Di i

                i

                I Di i

                i

                β χ

                β χ α

                α δ η

                β χ

                β χ α

                α δ η

                β

                =

                =

                =

                =

                minus sdot minus

                minus minus sdot minus minus

                minus minus sdot minus

                minus sdot minus

                minus minus sdot minus minus

                minus minus sdot minus

                minus

                prod

                prod

                prod

                prod

                ( ) ( )

                ( ) ( )( ) ( )

                1

                1

                1

                2

                2

                2

                3

                33

                331

                3

                3 3 31

                3

                1 0 0

                0 0 0 0 0 0 1 1 1 1 0

                0 0 0 0 0 0 0 1 1 1

                i i

                i i

                I Di i

                i

                I Di i

                i

                SIDSIDSIDχ

                β χ α

                α δ η

                =

                =

                sdot

                sdot minus

                minus minus sdot minus minus minus minus sdot minus

                prod

                prod

                WSSV 3-host community matrix model

                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                • Slide Number 1
                • Slide Number 2
                • Slide Number 3
                • Slide Number 4
                • Slide Number 5
                • Slide Number 6
                • Slide Number 7
                • Slide Number 8
                • Slide Number 9
                • Emergence of White spot syndrome virus
                • Slide Number 11
                • Slide Number 12
                • Slide Number 13
                • Hosts of WSSV
                • WSSV Litopenaeus vannamei
                • Slide Number 16
                • Slide Number 17
                • Slide Number 18
                • Slide Number 19
                • Slide Number 20
                • Slide Number 21
                • Slide Number 22
                • Slide Number 23
                • Slide Number 24
                • Slide Number 25
                • Slide Number 26
                • Slide Number 27
                • Slide Number 28
                • Slide Number 29
                • Slide Number 30
                • Slide Number 31
                • Slide Number 32
                • Slide Number 33
                • Slide Number 34
                • Slide Number 35
                • Slide Number 36
                • Slide Number 37
                • Slide Number 38

                  19921994 1994 1998

                  1996

                  19932002

                  200219971995

                  1999

                  19991999

                  1999

                  2005

                  Spread of WSSV

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  Emergence of White spot syndrome virus

                  1 km

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  1 Environment changes bringing new contactsMore shrimpPonds built in new areas ndash where shrimp never were or in low numbersMore contact between other (terrestrial) arthropods and shrimp

                  2 Change in pathogen virulence

                  3 Introduced from elsewhere

                  Emergence of White spot syndrome virus

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  Source FAO

                  Worlds Production of Penaeid Shrimp

                  AquacultureCaptureTotal

                  0

                  5

                  10

                  15

                  Poun

                  ds (x

                  109 )

                  1950 1970 1990 2010

                  75

                  25

                  Worlds Production of Penaeid Shrimp

                  AquacultureCaptureTotal

                  0

                  5

                  10

                  15

                  Poun

                  ds (x

                  109 )

                  1950 1970 1990 2010

                  75

                  25

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  More shrimp ndash more placesGreater opportunity for contact between shrimp and other arthropods

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  Hosts of WSSV bull Shrimp

                  ndash Penaeusbull monodonbull semisulcatus

                  ndash Farfantepenaeusbull aztecusbull duorarum

                  ndash Fenneropenaeusbull chinensisbull indicusbull merguensisbull penicillatus

                  ndash Marsupenaeusbull japonicus

                  ndash Litopenaeusbull vannameibull stylirostrisbull setiferus

                  ndash Metapenaeus ensis

                  ndash Exopalaemonbull orientalis

                  ndash Macrobrachium sppndash Palaemon styliferuusndash Palaemonetes pugio

                  bull Crabndash Calappa lophosndash Charybdis

                  bull feriatabull natotor

                  ndash Helice spndash Portunus

                  bull pelagicusbull Sanguineolentus

                  ndash Callinectes sapidus

                  ndash Armasus cinereumndash Scylla serratandash Sesarma sppndash Sommanniathelpusa spndash Thalamita spndash Uca sppndash Menippe adina

                  bull Lobsterndash Panuluris

                  bull longipesbull ornatusbull argus

                  bull Crayfishndash Procambarus clarkiindash Cherax quadricarinatus

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  0

                  100

                  200

                  300

                  400

                  500

                  600

                  700

                  800

                  900

                  1000

                  0 3 6 9 12 15 18 21

                  Num

                  ber o

                  f shr

                  imp

                  Day

                  Weight 3 gDensity 550m3

                  Dose 003 bwfinal survival 000 003max daily mortality 10 06

                  WSSV Litopenaeus vannamei

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  Armasus cinereum

                  Uca panacea

                  Callinectes sapidus

                  Litopenaeus setiferus

                  Uca speciosa

                  Local decapods exposed to WSSV (China)

                  0 5 10 15 20 25 30Day

                  00

                  01

                  02

                  03

                  04

                  05

                  06

                  07

                  08

                  09

                  10

                  Surv

                  ival

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  Salt marshes

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  Mississippi sound

                  Jourdan

                  Biloxi

                  Pearl

                  Wolf

                  Lake Pontchartrain

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  Prevalence of WSSV in decapods of Ms Sound

                  Blue crab (Callinectes sapidus) (83 n=12)

                  Purple marsh crab (Sesarma reticulatum) (100 n=20)

                  Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

                  Panacea sand fiddler crab (U panacea) (108 n=1404)

                  Mudflat fiddler crab (U rapax) (230 n=88)

                  Spined fiddler crab (U spinicarpa) (357 n=98)

                  Red-jointed fiddler crab (U minax) (227 n=22)

                  Squareback marsh crab (Armasus cinereum) (267 n=30)

                  Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

                  White shrimp (Litopenaeus setiferus) (200 n=40)

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  Modeling WSSV in communities of decapods

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  WSSV life cycle diagram

                  λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

                  δ η

                  Susceptible Infected Dead

                  β

                  χ

                  λ

                  micro

                  α micro

                  ( ) ( )( )( ) ( )( ) ( ) ( )( )

                  ( ) ( )( ) ( ) ( )( )

                  1

                  1

                  1

                  1 1 1

                  1 1 1 1 1 1

                  1 1 1 1 1 1

                  t t

                  t t

                  I Dt t t

                  I Dt t t t

                  t t t t

                  S S S

                  I I S I

                  D D I D

                  β χ λ micro

                  β χ α micro

                  α micro η δ

                  +

                  +

                  +

                  = minus sdot minus minus minus + minus

                  = + sdot minus minus minus minus minus minus sdot minus sdot

                  = + minus minus sdot minus sdot minus minus minus sdot minus sdot

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  ( )1-

                  t t t tS S S Iβ

                  += sdot sdot

                  RossKermack-McKendrick

                  1- (1 )(1 ) t

                  t t tIS S S β+

                  = sdot minus minusReed-Frost

                  Black-Singer

                  Transmission terms - Force of infection λprobability of infection after contact

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  ( )1 1 Iλ β= minus minus

                  ( )Iλ β= sdot

                  Force of InfectionProbability of infection after contact with all infecteds

                  Ross

                  Reed-Frost

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  1 2 3 4 5 6 7

                  1 11 12 13 14 15 16 17

                  2 21 22 23 24 25 26 27

                  3 31 32 33 34 35 36 37

                  S S S S S S S

                  I SI SI SI SI SI SI SI

                  I SI SI SI SI SI SI SI

                  I SI SI SI SI SI SI SI

                  ( )1-

                  t t t tS S S Iβ

                  += sdot sdot

                  RossKermack-McKendrick

                  If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                  May have more infects than susceptiblesSome transmissions are to the same susceptible

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  2(1 )βminus

                  1 βminusβ 1 βminusβ

                  21 (1 )βminus minus

                  3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                  Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                  βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                  1- (1 )(1 ) t

                  t t tIS S S β+

                  = sdot minus minusReed-Frost

                  Black-Singer

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  Epidemic models ndash parameter estimates

                  ( ) ( )( )( ) ( )( )

                  ( ) ( )( )

                  1

                  1

                  1

                  1 1 1

                  1 1 1

                  1 1 1

                  t t

                  t t

                  I Dt t t

                  I Dt t t t

                  t t t t

                  S S S

                  I I S I

                  D D I D

                  β χ

                  β χ α

                  α η δ

                  +

                  +

                  +

                  = minus sdot minus minus minus

                  = + sdot minus minus minus minus sdot

                  = + sdot minus minus minus sdot minus sdot

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  If t = 1 and I0 = 1

                  1

                  0

                  1 ss

                  β

                  = minus

                  The proportion infected after exposure to one infected shrimpβ

                  Parameter estimates ndash transmission (β χ)

                  1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                  Solve for β

                  1

                  1

                  0

                  0

                  ln(1) 1 exp

                  tSS

                  = minus

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  Parameter estimates ndash transmission (β χ)

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  Parameter estimates ndash transmission (β χ)

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  Parameter estimates ndash transmission (β χ)

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                  Parameter estimates ndash transmission (β χ) and virulence (α)

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  1t t tI I I α+ = minus sdot

                  0

                  10

                  20

                  30

                  40

                  0 4 8 12 16Time (h)

                  Surv

                  ival

                  Parameter estimates ndash virulence (α)

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  decomposition

                  transmission decreases by 48 per day

                  y-intercept = 0499

                  0 4 8 12Days after death

                  00

                  02

                  04

                  06

                  08

                  10

                  Tran

                  smis

                  sion

                  χ

                  Parameter estimates ndash decay of transmission (δ)

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  Parameter estimates η consumption of shrimp

                  24 shrimp12 shrimp

                  6 shrimp1 shrimp

                  FedFasted

                  decrease per hr (day) decrease per hr (day)

                  0 10 20 30Time (hr)

                  00

                  02

                  04

                  06

                  08

                  10

                  Prop

                  ortio

                  n B

                  iom

                  ass

                  0 10 20 300 10 20 300 10 20 300 10 20 30

                  10

                  0 10 20 30Time (hr)

                  00

                  02

                  04

                  06

                  08

                  Prop

                  ortio

                  n B

                  iom

                  ass

                  0 10 20 300 10 20 300 10 20 300 10 20 30

                  17 (99)30 (100)34 (100)33 (100)

                  6 (79)11 (94)11 (94)12 (96)

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  Parameter estimates consumption (η) amp decomposition (δ) combined

                  048 + 100 - 10 048= 100

                  048 + 79 - 7948= 089

                  An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  State Duration Transmission Product

                  Live Infected β

                  Dead Infected χ( )( )

                  11 1 1δ ηminus minus minus

                  βα

                  ( )( )1 1 1χδ ηminus minus minus

                  0R β χα δ η δ η

                  = ++ minus sdot

                  Life table of infection

                  001 06 0904 05 09 05 09

                  R = + =+ minus sdot

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  WSSV life cycle diagram3-host community

                  Susceptible

                  Susceptible

                  Susceptible Infected

                  Infected

                  Infected Dead

                  Dead

                  Dead

                  β31

                  χ31

                  χ11

                  β11λ1

                  λ2

                  λ3

                  micro1

                  micro2

                  micro3

                  β12 β21 χ21

                  α1 micro1

                  α2 micro2

                  α3 micro3

                  χ12

                  δ1 η1

                  δ2 η2

                  δ3 η3χ33

                  β33

                  χ13

                  β13

                  χ22

                  β32χ32

                  β22

                  χ23β23

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  ( ) ( )

                  ( ) ( )( ) ( )

                  ( ) ( )

                  ( ) ( )( ) ( )

                  3

                  1 11

                  3

                  1 1 11

                  1

                  3

                  2 21

                  3

                  2 2 21

                  2

                  3

                  1 1 0 0 0 0 0 0 0 0

                  1 1 1 1 0 0 0 0 0 0 0

                  0 1 1 1 0 0 0 0 0 0

                  0 0 0 1 1 0 0 0 0 0

                  0 0 0 1 1 1 1 0 0 0 0

                  0 0 0 0 1 1 1 0 0 0

                  0 0 0 0 0 0 1

                  i i

                  i i

                  i i

                  i i

                  I Di i

                  i

                  I Di i

                  i

                  I Di i

                  i

                  I Di i

                  i

                  β χ

                  β χ α

                  α δ η

                  β χ

                  β χ α

                  α δ η

                  β

                  =

                  =

                  =

                  =

                  minus sdot minus

                  minus minus sdot minus minus

                  minus minus sdot minus

                  minus sdot minus

                  minus minus sdot minus minus

                  minus minus sdot minus

                  minus

                  prod

                  prod

                  prod

                  prod

                  ( ) ( )

                  ( ) ( )( ) ( )

                  1

                  1

                  1

                  2

                  2

                  2

                  3

                  33

                  331

                  3

                  3 3 31

                  3

                  1 0 0

                  0 0 0 0 0 0 1 1 1 1 0

                  0 0 0 0 0 0 0 1 1 1

                  i i

                  i i

                  I Di i

                  i

                  I Di i

                  i

                  SIDSIDSIDχ

                  β χ α

                  α δ η

                  =

                  =

                  sdot

                  sdot minus

                  minus minus sdot minus minus minus minus sdot minus

                  prod

                  prod

                  WSSV 3-host community matrix model

                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                  • Slide Number 1
                  • Slide Number 2
                  • Slide Number 3
                  • Slide Number 4
                  • Slide Number 5
                  • Slide Number 6
                  • Slide Number 7
                  • Slide Number 8
                  • Slide Number 9
                  • Emergence of White spot syndrome virus
                  • Slide Number 11
                  • Slide Number 12
                  • Slide Number 13
                  • Hosts of WSSV
                  • WSSV Litopenaeus vannamei
                  • Slide Number 16
                  • Slide Number 17
                  • Slide Number 18
                  • Slide Number 19
                  • Slide Number 20
                  • Slide Number 21
                  • Slide Number 22
                  • Slide Number 23
                  • Slide Number 24
                  • Slide Number 25
                  • Slide Number 26
                  • Slide Number 27
                  • Slide Number 28
                  • Slide Number 29
                  • Slide Number 30
                  • Slide Number 31
                  • Slide Number 32
                  • Slide Number 33
                  • Slide Number 34
                  • Slide Number 35
                  • Slide Number 36
                  • Slide Number 37
                  • Slide Number 38

                    Emergence of White spot syndrome virus

                    1 km

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    1 Environment changes bringing new contactsMore shrimpPonds built in new areas ndash where shrimp never were or in low numbersMore contact between other (terrestrial) arthropods and shrimp

                    2 Change in pathogen virulence

                    3 Introduced from elsewhere

                    Emergence of White spot syndrome virus

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    Source FAO

                    Worlds Production of Penaeid Shrimp

                    AquacultureCaptureTotal

                    0

                    5

                    10

                    15

                    Poun

                    ds (x

                    109 )

                    1950 1970 1990 2010

                    75

                    25

                    Worlds Production of Penaeid Shrimp

                    AquacultureCaptureTotal

                    0

                    5

                    10

                    15

                    Poun

                    ds (x

                    109 )

                    1950 1970 1990 2010

                    75

                    25

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    More shrimp ndash more placesGreater opportunity for contact between shrimp and other arthropods

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    Hosts of WSSV bull Shrimp

                    ndash Penaeusbull monodonbull semisulcatus

                    ndash Farfantepenaeusbull aztecusbull duorarum

                    ndash Fenneropenaeusbull chinensisbull indicusbull merguensisbull penicillatus

                    ndash Marsupenaeusbull japonicus

                    ndash Litopenaeusbull vannameibull stylirostrisbull setiferus

                    ndash Metapenaeus ensis

                    ndash Exopalaemonbull orientalis

                    ndash Macrobrachium sppndash Palaemon styliferuusndash Palaemonetes pugio

                    bull Crabndash Calappa lophosndash Charybdis

                    bull feriatabull natotor

                    ndash Helice spndash Portunus

                    bull pelagicusbull Sanguineolentus

                    ndash Callinectes sapidus

                    ndash Armasus cinereumndash Scylla serratandash Sesarma sppndash Sommanniathelpusa spndash Thalamita spndash Uca sppndash Menippe adina

                    bull Lobsterndash Panuluris

                    bull longipesbull ornatusbull argus

                    bull Crayfishndash Procambarus clarkiindash Cherax quadricarinatus

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    0

                    100

                    200

                    300

                    400

                    500

                    600

                    700

                    800

                    900

                    1000

                    0 3 6 9 12 15 18 21

                    Num

                    ber o

                    f shr

                    imp

                    Day

                    Weight 3 gDensity 550m3

                    Dose 003 bwfinal survival 000 003max daily mortality 10 06

                    WSSV Litopenaeus vannamei

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    Armasus cinereum

                    Uca panacea

                    Callinectes sapidus

                    Litopenaeus setiferus

                    Uca speciosa

                    Local decapods exposed to WSSV (China)

                    0 5 10 15 20 25 30Day

                    00

                    01

                    02

                    03

                    04

                    05

                    06

                    07

                    08

                    09

                    10

                    Surv

                    ival

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    Salt marshes

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    Mississippi sound

                    Jourdan

                    Biloxi

                    Pearl

                    Wolf

                    Lake Pontchartrain

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    Prevalence of WSSV in decapods of Ms Sound

                    Blue crab (Callinectes sapidus) (83 n=12)

                    Purple marsh crab (Sesarma reticulatum) (100 n=20)

                    Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

                    Panacea sand fiddler crab (U panacea) (108 n=1404)

                    Mudflat fiddler crab (U rapax) (230 n=88)

                    Spined fiddler crab (U spinicarpa) (357 n=98)

                    Red-jointed fiddler crab (U minax) (227 n=22)

                    Squareback marsh crab (Armasus cinereum) (267 n=30)

                    Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

                    White shrimp (Litopenaeus setiferus) (200 n=40)

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    Modeling WSSV in communities of decapods

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    WSSV life cycle diagram

                    λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

                    δ η

                    Susceptible Infected Dead

                    β

                    χ

                    λ

                    micro

                    α micro

                    ( ) ( )( )( ) ( )( ) ( ) ( )( )

                    ( ) ( )( ) ( ) ( )( )

                    1

                    1

                    1

                    1 1 1

                    1 1 1 1 1 1

                    1 1 1 1 1 1

                    t t

                    t t

                    I Dt t t

                    I Dt t t t

                    t t t t

                    S S S

                    I I S I

                    D D I D

                    β χ λ micro

                    β χ α micro

                    α micro η δ

                    +

                    +

                    +

                    = minus sdot minus minus minus + minus

                    = + sdot minus minus minus minus minus minus sdot minus sdot

                    = + minus minus sdot minus sdot minus minus minus sdot minus sdot

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    ( )1-

                    t t t tS S S Iβ

                    += sdot sdot

                    RossKermack-McKendrick

                    1- (1 )(1 ) t

                    t t tIS S S β+

                    = sdot minus minusReed-Frost

                    Black-Singer

                    Transmission terms - Force of infection λprobability of infection after contact

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    ( )1 1 Iλ β= minus minus

                    ( )Iλ β= sdot

                    Force of InfectionProbability of infection after contact with all infecteds

                    Ross

                    Reed-Frost

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    1 2 3 4 5 6 7

                    1 11 12 13 14 15 16 17

                    2 21 22 23 24 25 26 27

                    3 31 32 33 34 35 36 37

                    S S S S S S S

                    I SI SI SI SI SI SI SI

                    I SI SI SI SI SI SI SI

                    I SI SI SI SI SI SI SI

                    ( )1-

                    t t t tS S S Iβ

                    += sdot sdot

                    RossKermack-McKendrick

                    If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                    May have more infects than susceptiblesSome transmissions are to the same susceptible

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    2(1 )βminus

                    1 βminusβ 1 βminusβ

                    21 (1 )βminus minus

                    3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                    Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                    βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                    1- (1 )(1 ) t

                    t t tIS S S β+

                    = sdot minus minusReed-Frost

                    Black-Singer

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    Epidemic models ndash parameter estimates

                    ( ) ( )( )( ) ( )( )

                    ( ) ( )( )

                    1

                    1

                    1

                    1 1 1

                    1 1 1

                    1 1 1

                    t t

                    t t

                    I Dt t t

                    I Dt t t t

                    t t t t

                    S S S

                    I I S I

                    D D I D

                    β χ

                    β χ α

                    α η δ

                    +

                    +

                    +

                    = minus sdot minus minus minus

                    = + sdot minus minus minus minus sdot

                    = + sdot minus minus minus sdot minus sdot

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    If t = 1 and I0 = 1

                    1

                    0

                    1 ss

                    β

                    = minus

                    The proportion infected after exposure to one infected shrimpβ

                    Parameter estimates ndash transmission (β χ)

                    1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                    Solve for β

                    1

                    1

                    0

                    0

                    ln(1) 1 exp

                    tSS

                    = minus

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    Parameter estimates ndash transmission (β χ)

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    Parameter estimates ndash transmission (β χ)

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    Parameter estimates ndash transmission (β χ)

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                    Parameter estimates ndash transmission (β χ) and virulence (α)

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    1t t tI I I α+ = minus sdot

                    0

                    10

                    20

                    30

                    40

                    0 4 8 12 16Time (h)

                    Surv

                    ival

                    Parameter estimates ndash virulence (α)

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    decomposition

                    transmission decreases by 48 per day

                    y-intercept = 0499

                    0 4 8 12Days after death

                    00

                    02

                    04

                    06

                    08

                    10

                    Tran

                    smis

                    sion

                    χ

                    Parameter estimates ndash decay of transmission (δ)

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    Parameter estimates η consumption of shrimp

                    24 shrimp12 shrimp

                    6 shrimp1 shrimp

                    FedFasted

                    decrease per hr (day) decrease per hr (day)

                    0 10 20 30Time (hr)

                    00

                    02

                    04

                    06

                    08

                    10

                    Prop

                    ortio

                    n B

                    iom

                    ass

                    0 10 20 300 10 20 300 10 20 300 10 20 30

                    10

                    0 10 20 30Time (hr)

                    00

                    02

                    04

                    06

                    08

                    Prop

                    ortio

                    n B

                    iom

                    ass

                    0 10 20 300 10 20 300 10 20 300 10 20 30

                    17 (99)30 (100)34 (100)33 (100)

                    6 (79)11 (94)11 (94)12 (96)

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    Parameter estimates consumption (η) amp decomposition (δ) combined

                    048 + 100 - 10 048= 100

                    048 + 79 - 7948= 089

                    An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    State Duration Transmission Product

                    Live Infected β

                    Dead Infected χ( )( )

                    11 1 1δ ηminus minus minus

                    βα

                    ( )( )1 1 1χδ ηminus minus minus

                    0R β χα δ η δ η

                    = ++ minus sdot

                    Life table of infection

                    001 06 0904 05 09 05 09

                    R = + =+ minus sdot

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    WSSV life cycle diagram3-host community

                    Susceptible

                    Susceptible

                    Susceptible Infected

                    Infected

                    Infected Dead

                    Dead

                    Dead

                    β31

                    χ31

                    χ11

                    β11λ1

                    λ2

                    λ3

                    micro1

                    micro2

                    micro3

                    β12 β21 χ21

                    α1 micro1

                    α2 micro2

                    α3 micro3

                    χ12

                    δ1 η1

                    δ2 η2

                    δ3 η3χ33

                    β33

                    χ13

                    β13

                    χ22

                    β32χ32

                    β22

                    χ23β23

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    ( ) ( )

                    ( ) ( )( ) ( )

                    ( ) ( )

                    ( ) ( )( ) ( )

                    3

                    1 11

                    3

                    1 1 11

                    1

                    3

                    2 21

                    3

                    2 2 21

                    2

                    3

                    1 1 0 0 0 0 0 0 0 0

                    1 1 1 1 0 0 0 0 0 0 0

                    0 1 1 1 0 0 0 0 0 0

                    0 0 0 1 1 0 0 0 0 0

                    0 0 0 1 1 1 1 0 0 0 0

                    0 0 0 0 1 1 1 0 0 0

                    0 0 0 0 0 0 1

                    i i

                    i i

                    i i

                    i i

                    I Di i

                    i

                    I Di i

                    i

                    I Di i

                    i

                    I Di i

                    i

                    β χ

                    β χ α

                    α δ η

                    β χ

                    β χ α

                    α δ η

                    β

                    =

                    =

                    =

                    =

                    minus sdot minus

                    minus minus sdot minus minus

                    minus minus sdot minus

                    minus sdot minus

                    minus minus sdot minus minus

                    minus minus sdot minus

                    minus

                    prod

                    prod

                    prod

                    prod

                    ( ) ( )

                    ( ) ( )( ) ( )

                    1

                    1

                    1

                    2

                    2

                    2

                    3

                    33

                    331

                    3

                    3 3 31

                    3

                    1 0 0

                    0 0 0 0 0 0 1 1 1 1 0

                    0 0 0 0 0 0 0 1 1 1

                    i i

                    i i

                    I Di i

                    i

                    I Di i

                    i

                    SIDSIDSIDχ

                    β χ α

                    α δ η

                    =

                    =

                    sdot

                    sdot minus

                    minus minus sdot minus minus minus minus sdot minus

                    prod

                    prod

                    WSSV 3-host community matrix model

                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                    • Slide Number 1
                    • Slide Number 2
                    • Slide Number 3
                    • Slide Number 4
                    • Slide Number 5
                    • Slide Number 6
                    • Slide Number 7
                    • Slide Number 8
                    • Slide Number 9
                    • Emergence of White spot syndrome virus
                    • Slide Number 11
                    • Slide Number 12
                    • Slide Number 13
                    • Hosts of WSSV
                    • WSSV Litopenaeus vannamei
                    • Slide Number 16
                    • Slide Number 17
                    • Slide Number 18
                    • Slide Number 19
                    • Slide Number 20
                    • Slide Number 21
                    • Slide Number 22
                    • Slide Number 23
                    • Slide Number 24
                    • Slide Number 25
                    • Slide Number 26
                    • Slide Number 27
                    • Slide Number 28
                    • Slide Number 29
                    • Slide Number 30
                    • Slide Number 31
                    • Slide Number 32
                    • Slide Number 33
                    • Slide Number 34
                    • Slide Number 35
                    • Slide Number 36
                    • Slide Number 37
                    • Slide Number 38

                      1 Environment changes bringing new contactsMore shrimpPonds built in new areas ndash where shrimp never were or in low numbersMore contact between other (terrestrial) arthropods and shrimp

                      2 Change in pathogen virulence

                      3 Introduced from elsewhere

                      Emergence of White spot syndrome virus

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      Source FAO

                      Worlds Production of Penaeid Shrimp

                      AquacultureCaptureTotal

                      0

                      5

                      10

                      15

                      Poun

                      ds (x

                      109 )

                      1950 1970 1990 2010

                      75

                      25

                      Worlds Production of Penaeid Shrimp

                      AquacultureCaptureTotal

                      0

                      5

                      10

                      15

                      Poun

                      ds (x

                      109 )

                      1950 1970 1990 2010

                      75

                      25

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      More shrimp ndash more placesGreater opportunity for contact between shrimp and other arthropods

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      Hosts of WSSV bull Shrimp

                      ndash Penaeusbull monodonbull semisulcatus

                      ndash Farfantepenaeusbull aztecusbull duorarum

                      ndash Fenneropenaeusbull chinensisbull indicusbull merguensisbull penicillatus

                      ndash Marsupenaeusbull japonicus

                      ndash Litopenaeusbull vannameibull stylirostrisbull setiferus

                      ndash Metapenaeus ensis

                      ndash Exopalaemonbull orientalis

                      ndash Macrobrachium sppndash Palaemon styliferuusndash Palaemonetes pugio

                      bull Crabndash Calappa lophosndash Charybdis

                      bull feriatabull natotor

                      ndash Helice spndash Portunus

                      bull pelagicusbull Sanguineolentus

                      ndash Callinectes sapidus

                      ndash Armasus cinereumndash Scylla serratandash Sesarma sppndash Sommanniathelpusa spndash Thalamita spndash Uca sppndash Menippe adina

                      bull Lobsterndash Panuluris

                      bull longipesbull ornatusbull argus

                      bull Crayfishndash Procambarus clarkiindash Cherax quadricarinatus

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      0

                      100

                      200

                      300

                      400

                      500

                      600

                      700

                      800

                      900

                      1000

                      0 3 6 9 12 15 18 21

                      Num

                      ber o

                      f shr

                      imp

                      Day

                      Weight 3 gDensity 550m3

                      Dose 003 bwfinal survival 000 003max daily mortality 10 06

                      WSSV Litopenaeus vannamei

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      Armasus cinereum

                      Uca panacea

                      Callinectes sapidus

                      Litopenaeus setiferus

                      Uca speciosa

                      Local decapods exposed to WSSV (China)

                      0 5 10 15 20 25 30Day

                      00

                      01

                      02

                      03

                      04

                      05

                      06

                      07

                      08

                      09

                      10

                      Surv

                      ival

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      Salt marshes

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      Mississippi sound

                      Jourdan

                      Biloxi

                      Pearl

                      Wolf

                      Lake Pontchartrain

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      Prevalence of WSSV in decapods of Ms Sound

                      Blue crab (Callinectes sapidus) (83 n=12)

                      Purple marsh crab (Sesarma reticulatum) (100 n=20)

                      Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

                      Panacea sand fiddler crab (U panacea) (108 n=1404)

                      Mudflat fiddler crab (U rapax) (230 n=88)

                      Spined fiddler crab (U spinicarpa) (357 n=98)

                      Red-jointed fiddler crab (U minax) (227 n=22)

                      Squareback marsh crab (Armasus cinereum) (267 n=30)

                      Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

                      White shrimp (Litopenaeus setiferus) (200 n=40)

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      Modeling WSSV in communities of decapods

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      WSSV life cycle diagram

                      λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

                      δ η

                      Susceptible Infected Dead

                      β

                      χ

                      λ

                      micro

                      α micro

                      ( ) ( )( )( ) ( )( ) ( ) ( )( )

                      ( ) ( )( ) ( ) ( )( )

                      1

                      1

                      1

                      1 1 1

                      1 1 1 1 1 1

                      1 1 1 1 1 1

                      t t

                      t t

                      I Dt t t

                      I Dt t t t

                      t t t t

                      S S S

                      I I S I

                      D D I D

                      β χ λ micro

                      β χ α micro

                      α micro η δ

                      +

                      +

                      +

                      = minus sdot minus minus minus + minus

                      = + sdot minus minus minus minus minus minus sdot minus sdot

                      = + minus minus sdot minus sdot minus minus minus sdot minus sdot

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      ( )1-

                      t t t tS S S Iβ

                      += sdot sdot

                      RossKermack-McKendrick

                      1- (1 )(1 ) t

                      t t tIS S S β+

                      = sdot minus minusReed-Frost

                      Black-Singer

                      Transmission terms - Force of infection λprobability of infection after contact

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      ( )1 1 Iλ β= minus minus

                      ( )Iλ β= sdot

                      Force of InfectionProbability of infection after contact with all infecteds

                      Ross

                      Reed-Frost

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      1 2 3 4 5 6 7

                      1 11 12 13 14 15 16 17

                      2 21 22 23 24 25 26 27

                      3 31 32 33 34 35 36 37

                      S S S S S S S

                      I SI SI SI SI SI SI SI

                      I SI SI SI SI SI SI SI

                      I SI SI SI SI SI SI SI

                      ( )1-

                      t t t tS S S Iβ

                      += sdot sdot

                      RossKermack-McKendrick

                      If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                      May have more infects than susceptiblesSome transmissions are to the same susceptible

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      2(1 )βminus

                      1 βminusβ 1 βminusβ

                      21 (1 )βminus minus

                      3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                      Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                      βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                      1- (1 )(1 ) t

                      t t tIS S S β+

                      = sdot minus minusReed-Frost

                      Black-Singer

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      Epidemic models ndash parameter estimates

                      ( ) ( )( )( ) ( )( )

                      ( ) ( )( )

                      1

                      1

                      1

                      1 1 1

                      1 1 1

                      1 1 1

                      t t

                      t t

                      I Dt t t

                      I Dt t t t

                      t t t t

                      S S S

                      I I S I

                      D D I D

                      β χ

                      β χ α

                      α η δ

                      +

                      +

                      +

                      = minus sdot minus minus minus

                      = + sdot minus minus minus minus sdot

                      = + sdot minus minus minus sdot minus sdot

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      If t = 1 and I0 = 1

                      1

                      0

                      1 ss

                      β

                      = minus

                      The proportion infected after exposure to one infected shrimpβ

                      Parameter estimates ndash transmission (β χ)

                      1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                      Solve for β

                      1

                      1

                      0

                      0

                      ln(1) 1 exp

                      tSS

                      = minus

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      Parameter estimates ndash transmission (β χ)

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      Parameter estimates ndash transmission (β χ)

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      Parameter estimates ndash transmission (β χ)

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                      Parameter estimates ndash transmission (β χ) and virulence (α)

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      1t t tI I I α+ = minus sdot

                      0

                      10

                      20

                      30

                      40

                      0 4 8 12 16Time (h)

                      Surv

                      ival

                      Parameter estimates ndash virulence (α)

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      decomposition

                      transmission decreases by 48 per day

                      y-intercept = 0499

                      0 4 8 12Days after death

                      00

                      02

                      04

                      06

                      08

                      10

                      Tran

                      smis

                      sion

                      χ

                      Parameter estimates ndash decay of transmission (δ)

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      Parameter estimates η consumption of shrimp

                      24 shrimp12 shrimp

                      6 shrimp1 shrimp

                      FedFasted

                      decrease per hr (day) decrease per hr (day)

                      0 10 20 30Time (hr)

                      00

                      02

                      04

                      06

                      08

                      10

                      Prop

                      ortio

                      n B

                      iom

                      ass

                      0 10 20 300 10 20 300 10 20 300 10 20 30

                      10

                      0 10 20 30Time (hr)

                      00

                      02

                      04

                      06

                      08

                      Prop

                      ortio

                      n B

                      iom

                      ass

                      0 10 20 300 10 20 300 10 20 300 10 20 30

                      17 (99)30 (100)34 (100)33 (100)

                      6 (79)11 (94)11 (94)12 (96)

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      Parameter estimates consumption (η) amp decomposition (δ) combined

                      048 + 100 - 10 048= 100

                      048 + 79 - 7948= 089

                      An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      State Duration Transmission Product

                      Live Infected β

                      Dead Infected χ( )( )

                      11 1 1δ ηminus minus minus

                      βα

                      ( )( )1 1 1χδ ηminus minus minus

                      0R β χα δ η δ η

                      = ++ minus sdot

                      Life table of infection

                      001 06 0904 05 09 05 09

                      R = + =+ minus sdot

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      WSSV life cycle diagram3-host community

                      Susceptible

                      Susceptible

                      Susceptible Infected

                      Infected

                      Infected Dead

                      Dead

                      Dead

                      β31

                      χ31

                      χ11

                      β11λ1

                      λ2

                      λ3

                      micro1

                      micro2

                      micro3

                      β12 β21 χ21

                      α1 micro1

                      α2 micro2

                      α3 micro3

                      χ12

                      δ1 η1

                      δ2 η2

                      δ3 η3χ33

                      β33

                      χ13

                      β13

                      χ22

                      β32χ32

                      β22

                      χ23β23

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      ( ) ( )

                      ( ) ( )( ) ( )

                      ( ) ( )

                      ( ) ( )( ) ( )

                      3

                      1 11

                      3

                      1 1 11

                      1

                      3

                      2 21

                      3

                      2 2 21

                      2

                      3

                      1 1 0 0 0 0 0 0 0 0

                      1 1 1 1 0 0 0 0 0 0 0

                      0 1 1 1 0 0 0 0 0 0

                      0 0 0 1 1 0 0 0 0 0

                      0 0 0 1 1 1 1 0 0 0 0

                      0 0 0 0 1 1 1 0 0 0

                      0 0 0 0 0 0 1

                      i i

                      i i

                      i i

                      i i

                      I Di i

                      i

                      I Di i

                      i

                      I Di i

                      i

                      I Di i

                      i

                      β χ

                      β χ α

                      α δ η

                      β χ

                      β χ α

                      α δ η

                      β

                      =

                      =

                      =

                      =

                      minus sdot minus

                      minus minus sdot minus minus

                      minus minus sdot minus

                      minus sdot minus

                      minus minus sdot minus minus

                      minus minus sdot minus

                      minus

                      prod

                      prod

                      prod

                      prod

                      ( ) ( )

                      ( ) ( )( ) ( )

                      1

                      1

                      1

                      2

                      2

                      2

                      3

                      33

                      331

                      3

                      3 3 31

                      3

                      1 0 0

                      0 0 0 0 0 0 1 1 1 1 0

                      0 0 0 0 0 0 0 1 1 1

                      i i

                      i i

                      I Di i

                      i

                      I Di i

                      i

                      SIDSIDSIDχ

                      β χ α

                      α δ η

                      =

                      =

                      sdot

                      sdot minus

                      minus minus sdot minus minus minus minus sdot minus

                      prod

                      prod

                      WSSV 3-host community matrix model

                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                      • Slide Number 1
                      • Slide Number 2
                      • Slide Number 3
                      • Slide Number 4
                      • Slide Number 5
                      • Slide Number 6
                      • Slide Number 7
                      • Slide Number 8
                      • Slide Number 9
                      • Emergence of White spot syndrome virus
                      • Slide Number 11
                      • Slide Number 12
                      • Slide Number 13
                      • Hosts of WSSV
                      • WSSV Litopenaeus vannamei
                      • Slide Number 16
                      • Slide Number 17
                      • Slide Number 18
                      • Slide Number 19
                      • Slide Number 20
                      • Slide Number 21
                      • Slide Number 22
                      • Slide Number 23
                      • Slide Number 24
                      • Slide Number 25
                      • Slide Number 26
                      • Slide Number 27
                      • Slide Number 28
                      • Slide Number 29
                      • Slide Number 30
                      • Slide Number 31
                      • Slide Number 32
                      • Slide Number 33
                      • Slide Number 34
                      • Slide Number 35
                      • Slide Number 36
                      • Slide Number 37
                      • Slide Number 38

                        Source FAO

                        Worlds Production of Penaeid Shrimp

                        AquacultureCaptureTotal

                        0

                        5

                        10

                        15

                        Poun

                        ds (x

                        109 )

                        1950 1970 1990 2010

                        75

                        25

                        Worlds Production of Penaeid Shrimp

                        AquacultureCaptureTotal

                        0

                        5

                        10

                        15

                        Poun

                        ds (x

                        109 )

                        1950 1970 1990 2010

                        75

                        25

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        More shrimp ndash more placesGreater opportunity for contact between shrimp and other arthropods

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        Hosts of WSSV bull Shrimp

                        ndash Penaeusbull monodonbull semisulcatus

                        ndash Farfantepenaeusbull aztecusbull duorarum

                        ndash Fenneropenaeusbull chinensisbull indicusbull merguensisbull penicillatus

                        ndash Marsupenaeusbull japonicus

                        ndash Litopenaeusbull vannameibull stylirostrisbull setiferus

                        ndash Metapenaeus ensis

                        ndash Exopalaemonbull orientalis

                        ndash Macrobrachium sppndash Palaemon styliferuusndash Palaemonetes pugio

                        bull Crabndash Calappa lophosndash Charybdis

                        bull feriatabull natotor

                        ndash Helice spndash Portunus

                        bull pelagicusbull Sanguineolentus

                        ndash Callinectes sapidus

                        ndash Armasus cinereumndash Scylla serratandash Sesarma sppndash Sommanniathelpusa spndash Thalamita spndash Uca sppndash Menippe adina

                        bull Lobsterndash Panuluris

                        bull longipesbull ornatusbull argus

                        bull Crayfishndash Procambarus clarkiindash Cherax quadricarinatus

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        0

                        100

                        200

                        300

                        400

                        500

                        600

                        700

                        800

                        900

                        1000

                        0 3 6 9 12 15 18 21

                        Num

                        ber o

                        f shr

                        imp

                        Day

                        Weight 3 gDensity 550m3

                        Dose 003 bwfinal survival 000 003max daily mortality 10 06

                        WSSV Litopenaeus vannamei

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        Armasus cinereum

                        Uca panacea

                        Callinectes sapidus

                        Litopenaeus setiferus

                        Uca speciosa

                        Local decapods exposed to WSSV (China)

                        0 5 10 15 20 25 30Day

                        00

                        01

                        02

                        03

                        04

                        05

                        06

                        07

                        08

                        09

                        10

                        Surv

                        ival

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        Salt marshes

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        Mississippi sound

                        Jourdan

                        Biloxi

                        Pearl

                        Wolf

                        Lake Pontchartrain

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        Prevalence of WSSV in decapods of Ms Sound

                        Blue crab (Callinectes sapidus) (83 n=12)

                        Purple marsh crab (Sesarma reticulatum) (100 n=20)

                        Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

                        Panacea sand fiddler crab (U panacea) (108 n=1404)

                        Mudflat fiddler crab (U rapax) (230 n=88)

                        Spined fiddler crab (U spinicarpa) (357 n=98)

                        Red-jointed fiddler crab (U minax) (227 n=22)

                        Squareback marsh crab (Armasus cinereum) (267 n=30)

                        Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

                        White shrimp (Litopenaeus setiferus) (200 n=40)

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        Modeling WSSV in communities of decapods

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        WSSV life cycle diagram

                        λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

                        δ η

                        Susceptible Infected Dead

                        β

                        χ

                        λ

                        micro

                        α micro

                        ( ) ( )( )( ) ( )( ) ( ) ( )( )

                        ( ) ( )( ) ( ) ( )( )

                        1

                        1

                        1

                        1 1 1

                        1 1 1 1 1 1

                        1 1 1 1 1 1

                        t t

                        t t

                        I Dt t t

                        I Dt t t t

                        t t t t

                        S S S

                        I I S I

                        D D I D

                        β χ λ micro

                        β χ α micro

                        α micro η δ

                        +

                        +

                        +

                        = minus sdot minus minus minus + minus

                        = + sdot minus minus minus minus minus minus sdot minus sdot

                        = + minus minus sdot minus sdot minus minus minus sdot minus sdot

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        ( )1-

                        t t t tS S S Iβ

                        += sdot sdot

                        RossKermack-McKendrick

                        1- (1 )(1 ) t

                        t t tIS S S β+

                        = sdot minus minusReed-Frost

                        Black-Singer

                        Transmission terms - Force of infection λprobability of infection after contact

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        ( )1 1 Iλ β= minus minus

                        ( )Iλ β= sdot

                        Force of InfectionProbability of infection after contact with all infecteds

                        Ross

                        Reed-Frost

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        1 2 3 4 5 6 7

                        1 11 12 13 14 15 16 17

                        2 21 22 23 24 25 26 27

                        3 31 32 33 34 35 36 37

                        S S S S S S S

                        I SI SI SI SI SI SI SI

                        I SI SI SI SI SI SI SI

                        I SI SI SI SI SI SI SI

                        ( )1-

                        t t t tS S S Iβ

                        += sdot sdot

                        RossKermack-McKendrick

                        If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                        May have more infects than susceptiblesSome transmissions are to the same susceptible

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        2(1 )βminus

                        1 βminusβ 1 βminusβ

                        21 (1 )βminus minus

                        3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                        Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                        βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                        1- (1 )(1 ) t

                        t t tIS S S β+

                        = sdot minus minusReed-Frost

                        Black-Singer

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        Epidemic models ndash parameter estimates

                        ( ) ( )( )( ) ( )( )

                        ( ) ( )( )

                        1

                        1

                        1

                        1 1 1

                        1 1 1

                        1 1 1

                        t t

                        t t

                        I Dt t t

                        I Dt t t t

                        t t t t

                        S S S

                        I I S I

                        D D I D

                        β χ

                        β χ α

                        α η δ

                        +

                        +

                        +

                        = minus sdot minus minus minus

                        = + sdot minus minus minus minus sdot

                        = + sdot minus minus minus sdot minus sdot

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        If t = 1 and I0 = 1

                        1

                        0

                        1 ss

                        β

                        = minus

                        The proportion infected after exposure to one infected shrimpβ

                        Parameter estimates ndash transmission (β χ)

                        1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                        Solve for β

                        1

                        1

                        0

                        0

                        ln(1) 1 exp

                        tSS

                        = minus

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        Parameter estimates ndash transmission (β χ)

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        Parameter estimates ndash transmission (β χ)

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        Parameter estimates ndash transmission (β χ)

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                        Parameter estimates ndash transmission (β χ) and virulence (α)

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        1t t tI I I α+ = minus sdot

                        0

                        10

                        20

                        30

                        40

                        0 4 8 12 16Time (h)

                        Surv

                        ival

                        Parameter estimates ndash virulence (α)

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        decomposition

                        transmission decreases by 48 per day

                        y-intercept = 0499

                        0 4 8 12Days after death

                        00

                        02

                        04

                        06

                        08

                        10

                        Tran

                        smis

                        sion

                        χ

                        Parameter estimates ndash decay of transmission (δ)

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        Parameter estimates η consumption of shrimp

                        24 shrimp12 shrimp

                        6 shrimp1 shrimp

                        FedFasted

                        decrease per hr (day) decrease per hr (day)

                        0 10 20 30Time (hr)

                        00

                        02

                        04

                        06

                        08

                        10

                        Prop

                        ortio

                        n B

                        iom

                        ass

                        0 10 20 300 10 20 300 10 20 300 10 20 30

                        10

                        0 10 20 30Time (hr)

                        00

                        02

                        04

                        06

                        08

                        Prop

                        ortio

                        n B

                        iom

                        ass

                        0 10 20 300 10 20 300 10 20 300 10 20 30

                        17 (99)30 (100)34 (100)33 (100)

                        6 (79)11 (94)11 (94)12 (96)

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        Parameter estimates consumption (η) amp decomposition (δ) combined

                        048 + 100 - 10 048= 100

                        048 + 79 - 7948= 089

                        An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        State Duration Transmission Product

                        Live Infected β

                        Dead Infected χ( )( )

                        11 1 1δ ηminus minus minus

                        βα

                        ( )( )1 1 1χδ ηminus minus minus

                        0R β χα δ η δ η

                        = ++ minus sdot

                        Life table of infection

                        001 06 0904 05 09 05 09

                        R = + =+ minus sdot

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        WSSV life cycle diagram3-host community

                        Susceptible

                        Susceptible

                        Susceptible Infected

                        Infected

                        Infected Dead

                        Dead

                        Dead

                        β31

                        χ31

                        χ11

                        β11λ1

                        λ2

                        λ3

                        micro1

                        micro2

                        micro3

                        β12 β21 χ21

                        α1 micro1

                        α2 micro2

                        α3 micro3

                        χ12

                        δ1 η1

                        δ2 η2

                        δ3 η3χ33

                        β33

                        χ13

                        β13

                        χ22

                        β32χ32

                        β22

                        χ23β23

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        ( ) ( )

                        ( ) ( )( ) ( )

                        ( ) ( )

                        ( ) ( )( ) ( )

                        3

                        1 11

                        3

                        1 1 11

                        1

                        3

                        2 21

                        3

                        2 2 21

                        2

                        3

                        1 1 0 0 0 0 0 0 0 0

                        1 1 1 1 0 0 0 0 0 0 0

                        0 1 1 1 0 0 0 0 0 0

                        0 0 0 1 1 0 0 0 0 0

                        0 0 0 1 1 1 1 0 0 0 0

                        0 0 0 0 1 1 1 0 0 0

                        0 0 0 0 0 0 1

                        i i

                        i i

                        i i

                        i i

                        I Di i

                        i

                        I Di i

                        i

                        I Di i

                        i

                        I Di i

                        i

                        β χ

                        β χ α

                        α δ η

                        β χ

                        β χ α

                        α δ η

                        β

                        =

                        =

                        =

                        =

                        minus sdot minus

                        minus minus sdot minus minus

                        minus minus sdot minus

                        minus sdot minus

                        minus minus sdot minus minus

                        minus minus sdot minus

                        minus

                        prod

                        prod

                        prod

                        prod

                        ( ) ( )

                        ( ) ( )( ) ( )

                        1

                        1

                        1

                        2

                        2

                        2

                        3

                        33

                        331

                        3

                        3 3 31

                        3

                        1 0 0

                        0 0 0 0 0 0 1 1 1 1 0

                        0 0 0 0 0 0 0 1 1 1

                        i i

                        i i

                        I Di i

                        i

                        I Di i

                        i

                        SIDSIDSIDχ

                        β χ α

                        α δ η

                        =

                        =

                        sdot

                        sdot minus

                        minus minus sdot minus minus minus minus sdot minus

                        prod

                        prod

                        WSSV 3-host community matrix model

                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                        • Slide Number 1
                        • Slide Number 2
                        • Slide Number 3
                        • Slide Number 4
                        • Slide Number 5
                        • Slide Number 6
                        • Slide Number 7
                        • Slide Number 8
                        • Slide Number 9
                        • Emergence of White spot syndrome virus
                        • Slide Number 11
                        • Slide Number 12
                        • Slide Number 13
                        • Hosts of WSSV
                        • WSSV Litopenaeus vannamei
                        • Slide Number 16
                        • Slide Number 17
                        • Slide Number 18
                        • Slide Number 19
                        • Slide Number 20
                        • Slide Number 21
                        • Slide Number 22
                        • Slide Number 23
                        • Slide Number 24
                        • Slide Number 25
                        • Slide Number 26
                        • Slide Number 27
                        • Slide Number 28
                        • Slide Number 29
                        • Slide Number 30
                        • Slide Number 31
                        • Slide Number 32
                        • Slide Number 33
                        • Slide Number 34
                        • Slide Number 35
                        • Slide Number 36
                        • Slide Number 37
                        • Slide Number 38

                          More shrimp ndash more placesGreater opportunity for contact between shrimp and other arthropods

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          Hosts of WSSV bull Shrimp

                          ndash Penaeusbull monodonbull semisulcatus

                          ndash Farfantepenaeusbull aztecusbull duorarum

                          ndash Fenneropenaeusbull chinensisbull indicusbull merguensisbull penicillatus

                          ndash Marsupenaeusbull japonicus

                          ndash Litopenaeusbull vannameibull stylirostrisbull setiferus

                          ndash Metapenaeus ensis

                          ndash Exopalaemonbull orientalis

                          ndash Macrobrachium sppndash Palaemon styliferuusndash Palaemonetes pugio

                          bull Crabndash Calappa lophosndash Charybdis

                          bull feriatabull natotor

                          ndash Helice spndash Portunus

                          bull pelagicusbull Sanguineolentus

                          ndash Callinectes sapidus

                          ndash Armasus cinereumndash Scylla serratandash Sesarma sppndash Sommanniathelpusa spndash Thalamita spndash Uca sppndash Menippe adina

                          bull Lobsterndash Panuluris

                          bull longipesbull ornatusbull argus

                          bull Crayfishndash Procambarus clarkiindash Cherax quadricarinatus

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          0

                          100

                          200

                          300

                          400

                          500

                          600

                          700

                          800

                          900

                          1000

                          0 3 6 9 12 15 18 21

                          Num

                          ber o

                          f shr

                          imp

                          Day

                          Weight 3 gDensity 550m3

                          Dose 003 bwfinal survival 000 003max daily mortality 10 06

                          WSSV Litopenaeus vannamei

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          Armasus cinereum

                          Uca panacea

                          Callinectes sapidus

                          Litopenaeus setiferus

                          Uca speciosa

                          Local decapods exposed to WSSV (China)

                          0 5 10 15 20 25 30Day

                          00

                          01

                          02

                          03

                          04

                          05

                          06

                          07

                          08

                          09

                          10

                          Surv

                          ival

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          Salt marshes

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          Mississippi sound

                          Jourdan

                          Biloxi

                          Pearl

                          Wolf

                          Lake Pontchartrain

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          Prevalence of WSSV in decapods of Ms Sound

                          Blue crab (Callinectes sapidus) (83 n=12)

                          Purple marsh crab (Sesarma reticulatum) (100 n=20)

                          Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

                          Panacea sand fiddler crab (U panacea) (108 n=1404)

                          Mudflat fiddler crab (U rapax) (230 n=88)

                          Spined fiddler crab (U spinicarpa) (357 n=98)

                          Red-jointed fiddler crab (U minax) (227 n=22)

                          Squareback marsh crab (Armasus cinereum) (267 n=30)

                          Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

                          White shrimp (Litopenaeus setiferus) (200 n=40)

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          Modeling WSSV in communities of decapods

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          WSSV life cycle diagram

                          λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

                          δ η

                          Susceptible Infected Dead

                          β

                          χ

                          λ

                          micro

                          α micro

                          ( ) ( )( )( ) ( )( ) ( ) ( )( )

                          ( ) ( )( ) ( ) ( )( )

                          1

                          1

                          1

                          1 1 1

                          1 1 1 1 1 1

                          1 1 1 1 1 1

                          t t

                          t t

                          I Dt t t

                          I Dt t t t

                          t t t t

                          S S S

                          I I S I

                          D D I D

                          β χ λ micro

                          β χ α micro

                          α micro η δ

                          +

                          +

                          +

                          = minus sdot minus minus minus + minus

                          = + sdot minus minus minus minus minus minus sdot minus sdot

                          = + minus minus sdot minus sdot minus minus minus sdot minus sdot

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          ( )1-

                          t t t tS S S Iβ

                          += sdot sdot

                          RossKermack-McKendrick

                          1- (1 )(1 ) t

                          t t tIS S S β+

                          = sdot minus minusReed-Frost

                          Black-Singer

                          Transmission terms - Force of infection λprobability of infection after contact

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          ( )1 1 Iλ β= minus minus

                          ( )Iλ β= sdot

                          Force of InfectionProbability of infection after contact with all infecteds

                          Ross

                          Reed-Frost

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          1 2 3 4 5 6 7

                          1 11 12 13 14 15 16 17

                          2 21 22 23 24 25 26 27

                          3 31 32 33 34 35 36 37

                          S S S S S S S

                          I SI SI SI SI SI SI SI

                          I SI SI SI SI SI SI SI

                          I SI SI SI SI SI SI SI

                          ( )1-

                          t t t tS S S Iβ

                          += sdot sdot

                          RossKermack-McKendrick

                          If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                          May have more infects than susceptiblesSome transmissions are to the same susceptible

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          2(1 )βminus

                          1 βminusβ 1 βminusβ

                          21 (1 )βminus minus

                          3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                          Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                          βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                          1- (1 )(1 ) t

                          t t tIS S S β+

                          = sdot minus minusReed-Frost

                          Black-Singer

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          Epidemic models ndash parameter estimates

                          ( ) ( )( )( ) ( )( )

                          ( ) ( )( )

                          1

                          1

                          1

                          1 1 1

                          1 1 1

                          1 1 1

                          t t

                          t t

                          I Dt t t

                          I Dt t t t

                          t t t t

                          S S S

                          I I S I

                          D D I D

                          β χ

                          β χ α

                          α η δ

                          +

                          +

                          +

                          = minus sdot minus minus minus

                          = + sdot minus minus minus minus sdot

                          = + sdot minus minus minus sdot minus sdot

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          If t = 1 and I0 = 1

                          1

                          0

                          1 ss

                          β

                          = minus

                          The proportion infected after exposure to one infected shrimpβ

                          Parameter estimates ndash transmission (β χ)

                          1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                          Solve for β

                          1

                          1

                          0

                          0

                          ln(1) 1 exp

                          tSS

                          = minus

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          Parameter estimates ndash transmission (β χ)

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          Parameter estimates ndash transmission (β χ)

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          Parameter estimates ndash transmission (β χ)

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                          Parameter estimates ndash transmission (β χ) and virulence (α)

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          1t t tI I I α+ = minus sdot

                          0

                          10

                          20

                          30

                          40

                          0 4 8 12 16Time (h)

                          Surv

                          ival

                          Parameter estimates ndash virulence (α)

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          decomposition

                          transmission decreases by 48 per day

                          y-intercept = 0499

                          0 4 8 12Days after death

                          00

                          02

                          04

                          06

                          08

                          10

                          Tran

                          smis

                          sion

                          χ

                          Parameter estimates ndash decay of transmission (δ)

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          Parameter estimates η consumption of shrimp

                          24 shrimp12 shrimp

                          6 shrimp1 shrimp

                          FedFasted

                          decrease per hr (day) decrease per hr (day)

                          0 10 20 30Time (hr)

                          00

                          02

                          04

                          06

                          08

                          10

                          Prop

                          ortio

                          n B

                          iom

                          ass

                          0 10 20 300 10 20 300 10 20 300 10 20 30

                          10

                          0 10 20 30Time (hr)

                          00

                          02

                          04

                          06

                          08

                          Prop

                          ortio

                          n B

                          iom

                          ass

                          0 10 20 300 10 20 300 10 20 300 10 20 30

                          17 (99)30 (100)34 (100)33 (100)

                          6 (79)11 (94)11 (94)12 (96)

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          Parameter estimates consumption (η) amp decomposition (δ) combined

                          048 + 100 - 10 048= 100

                          048 + 79 - 7948= 089

                          An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          State Duration Transmission Product

                          Live Infected β

                          Dead Infected χ( )( )

                          11 1 1δ ηminus minus minus

                          βα

                          ( )( )1 1 1χδ ηminus minus minus

                          0R β χα δ η δ η

                          = ++ minus sdot

                          Life table of infection

                          001 06 0904 05 09 05 09

                          R = + =+ minus sdot

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          WSSV life cycle diagram3-host community

                          Susceptible

                          Susceptible

                          Susceptible Infected

                          Infected

                          Infected Dead

                          Dead

                          Dead

                          β31

                          χ31

                          χ11

                          β11λ1

                          λ2

                          λ3

                          micro1

                          micro2

                          micro3

                          β12 β21 χ21

                          α1 micro1

                          α2 micro2

                          α3 micro3

                          χ12

                          δ1 η1

                          δ2 η2

                          δ3 η3χ33

                          β33

                          χ13

                          β13

                          χ22

                          β32χ32

                          β22

                          χ23β23

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          ( ) ( )

                          ( ) ( )( ) ( )

                          ( ) ( )

                          ( ) ( )( ) ( )

                          3

                          1 11

                          3

                          1 1 11

                          1

                          3

                          2 21

                          3

                          2 2 21

                          2

                          3

                          1 1 0 0 0 0 0 0 0 0

                          1 1 1 1 0 0 0 0 0 0 0

                          0 1 1 1 0 0 0 0 0 0

                          0 0 0 1 1 0 0 0 0 0

                          0 0 0 1 1 1 1 0 0 0 0

                          0 0 0 0 1 1 1 0 0 0

                          0 0 0 0 0 0 1

                          i i

                          i i

                          i i

                          i i

                          I Di i

                          i

                          I Di i

                          i

                          I Di i

                          i

                          I Di i

                          i

                          β χ

                          β χ α

                          α δ η

                          β χ

                          β χ α

                          α δ η

                          β

                          =

                          =

                          =

                          =

                          minus sdot minus

                          minus minus sdot minus minus

                          minus minus sdot minus

                          minus sdot minus

                          minus minus sdot minus minus

                          minus minus sdot minus

                          minus

                          prod

                          prod

                          prod

                          prod

                          ( ) ( )

                          ( ) ( )( ) ( )

                          1

                          1

                          1

                          2

                          2

                          2

                          3

                          33

                          331

                          3

                          3 3 31

                          3

                          1 0 0

                          0 0 0 0 0 0 1 1 1 1 0

                          0 0 0 0 0 0 0 1 1 1

                          i i

                          i i

                          I Di i

                          i

                          I Di i

                          i

                          SIDSIDSIDχ

                          β χ α

                          α δ η

                          =

                          =

                          sdot

                          sdot minus

                          minus minus sdot minus minus minus minus sdot minus

                          prod

                          prod

                          WSSV 3-host community matrix model

                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                          • Slide Number 1
                          • Slide Number 2
                          • Slide Number 3
                          • Slide Number 4
                          • Slide Number 5
                          • Slide Number 6
                          • Slide Number 7
                          • Slide Number 8
                          • Slide Number 9
                          • Emergence of White spot syndrome virus
                          • Slide Number 11
                          • Slide Number 12
                          • Slide Number 13
                          • Hosts of WSSV
                          • WSSV Litopenaeus vannamei
                          • Slide Number 16
                          • Slide Number 17
                          • Slide Number 18
                          • Slide Number 19
                          • Slide Number 20
                          • Slide Number 21
                          • Slide Number 22
                          • Slide Number 23
                          • Slide Number 24
                          • Slide Number 25
                          • Slide Number 26
                          • Slide Number 27
                          • Slide Number 28
                          • Slide Number 29
                          • Slide Number 30
                          • Slide Number 31
                          • Slide Number 32
                          • Slide Number 33
                          • Slide Number 34
                          • Slide Number 35
                          • Slide Number 36
                          • Slide Number 37
                          • Slide Number 38

                            Hosts of WSSV bull Shrimp

                            ndash Penaeusbull monodonbull semisulcatus

                            ndash Farfantepenaeusbull aztecusbull duorarum

                            ndash Fenneropenaeusbull chinensisbull indicusbull merguensisbull penicillatus

                            ndash Marsupenaeusbull japonicus

                            ndash Litopenaeusbull vannameibull stylirostrisbull setiferus

                            ndash Metapenaeus ensis

                            ndash Exopalaemonbull orientalis

                            ndash Macrobrachium sppndash Palaemon styliferuusndash Palaemonetes pugio

                            bull Crabndash Calappa lophosndash Charybdis

                            bull feriatabull natotor

                            ndash Helice spndash Portunus

                            bull pelagicusbull Sanguineolentus

                            ndash Callinectes sapidus

                            ndash Armasus cinereumndash Scylla serratandash Sesarma sppndash Sommanniathelpusa spndash Thalamita spndash Uca sppndash Menippe adina

                            bull Lobsterndash Panuluris

                            bull longipesbull ornatusbull argus

                            bull Crayfishndash Procambarus clarkiindash Cherax quadricarinatus

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            0

                            100

                            200

                            300

                            400

                            500

                            600

                            700

                            800

                            900

                            1000

                            0 3 6 9 12 15 18 21

                            Num

                            ber o

                            f shr

                            imp

                            Day

                            Weight 3 gDensity 550m3

                            Dose 003 bwfinal survival 000 003max daily mortality 10 06

                            WSSV Litopenaeus vannamei

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            Armasus cinereum

                            Uca panacea

                            Callinectes sapidus

                            Litopenaeus setiferus

                            Uca speciosa

                            Local decapods exposed to WSSV (China)

                            0 5 10 15 20 25 30Day

                            00

                            01

                            02

                            03

                            04

                            05

                            06

                            07

                            08

                            09

                            10

                            Surv

                            ival

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            Salt marshes

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            Mississippi sound

                            Jourdan

                            Biloxi

                            Pearl

                            Wolf

                            Lake Pontchartrain

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            Prevalence of WSSV in decapods of Ms Sound

                            Blue crab (Callinectes sapidus) (83 n=12)

                            Purple marsh crab (Sesarma reticulatum) (100 n=20)

                            Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

                            Panacea sand fiddler crab (U panacea) (108 n=1404)

                            Mudflat fiddler crab (U rapax) (230 n=88)

                            Spined fiddler crab (U spinicarpa) (357 n=98)

                            Red-jointed fiddler crab (U minax) (227 n=22)

                            Squareback marsh crab (Armasus cinereum) (267 n=30)

                            Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

                            White shrimp (Litopenaeus setiferus) (200 n=40)

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            Modeling WSSV in communities of decapods

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            WSSV life cycle diagram

                            λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

                            δ η

                            Susceptible Infected Dead

                            β

                            χ

                            λ

                            micro

                            α micro

                            ( ) ( )( )( ) ( )( ) ( ) ( )( )

                            ( ) ( )( ) ( ) ( )( )

                            1

                            1

                            1

                            1 1 1

                            1 1 1 1 1 1

                            1 1 1 1 1 1

                            t t

                            t t

                            I Dt t t

                            I Dt t t t

                            t t t t

                            S S S

                            I I S I

                            D D I D

                            β χ λ micro

                            β χ α micro

                            α micro η δ

                            +

                            +

                            +

                            = minus sdot minus minus minus + minus

                            = + sdot minus minus minus minus minus minus sdot minus sdot

                            = + minus minus sdot minus sdot minus minus minus sdot minus sdot

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            ( )1-

                            t t t tS S S Iβ

                            += sdot sdot

                            RossKermack-McKendrick

                            1- (1 )(1 ) t

                            t t tIS S S β+

                            = sdot minus minusReed-Frost

                            Black-Singer

                            Transmission terms - Force of infection λprobability of infection after contact

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            ( )1 1 Iλ β= minus minus

                            ( )Iλ β= sdot

                            Force of InfectionProbability of infection after contact with all infecteds

                            Ross

                            Reed-Frost

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            1 2 3 4 5 6 7

                            1 11 12 13 14 15 16 17

                            2 21 22 23 24 25 26 27

                            3 31 32 33 34 35 36 37

                            S S S S S S S

                            I SI SI SI SI SI SI SI

                            I SI SI SI SI SI SI SI

                            I SI SI SI SI SI SI SI

                            ( )1-

                            t t t tS S S Iβ

                            += sdot sdot

                            RossKermack-McKendrick

                            If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                            May have more infects than susceptiblesSome transmissions are to the same susceptible

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            2(1 )βminus

                            1 βminusβ 1 βminusβ

                            21 (1 )βminus minus

                            3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                            Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                            βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                            1- (1 )(1 ) t

                            t t tIS S S β+

                            = sdot minus minusReed-Frost

                            Black-Singer

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            Epidemic models ndash parameter estimates

                            ( ) ( )( )( ) ( )( )

                            ( ) ( )( )

                            1

                            1

                            1

                            1 1 1

                            1 1 1

                            1 1 1

                            t t

                            t t

                            I Dt t t

                            I Dt t t t

                            t t t t

                            S S S

                            I I S I

                            D D I D

                            β χ

                            β χ α

                            α η δ

                            +

                            +

                            +

                            = minus sdot minus minus minus

                            = + sdot minus minus minus minus sdot

                            = + sdot minus minus minus sdot minus sdot

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            If t = 1 and I0 = 1

                            1

                            0

                            1 ss

                            β

                            = minus

                            The proportion infected after exposure to one infected shrimpβ

                            Parameter estimates ndash transmission (β χ)

                            1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                            Solve for β

                            1

                            1

                            0

                            0

                            ln(1) 1 exp

                            tSS

                            = minus

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            Parameter estimates ndash transmission (β χ)

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            Parameter estimates ndash transmission (β χ)

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            Parameter estimates ndash transmission (β χ)

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                            Parameter estimates ndash transmission (β χ) and virulence (α)

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            1t t tI I I α+ = minus sdot

                            0

                            10

                            20

                            30

                            40

                            0 4 8 12 16Time (h)

                            Surv

                            ival

                            Parameter estimates ndash virulence (α)

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            decomposition

                            transmission decreases by 48 per day

                            y-intercept = 0499

                            0 4 8 12Days after death

                            00

                            02

                            04

                            06

                            08

                            10

                            Tran

                            smis

                            sion

                            χ

                            Parameter estimates ndash decay of transmission (δ)

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            Parameter estimates η consumption of shrimp

                            24 shrimp12 shrimp

                            6 shrimp1 shrimp

                            FedFasted

                            decrease per hr (day) decrease per hr (day)

                            0 10 20 30Time (hr)

                            00

                            02

                            04

                            06

                            08

                            10

                            Prop

                            ortio

                            n B

                            iom

                            ass

                            0 10 20 300 10 20 300 10 20 300 10 20 30

                            10

                            0 10 20 30Time (hr)

                            00

                            02

                            04

                            06

                            08

                            Prop

                            ortio

                            n B

                            iom

                            ass

                            0 10 20 300 10 20 300 10 20 300 10 20 30

                            17 (99)30 (100)34 (100)33 (100)

                            6 (79)11 (94)11 (94)12 (96)

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            Parameter estimates consumption (η) amp decomposition (δ) combined

                            048 + 100 - 10 048= 100

                            048 + 79 - 7948= 089

                            An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            State Duration Transmission Product

                            Live Infected β

                            Dead Infected χ( )( )

                            11 1 1δ ηminus minus minus

                            βα

                            ( )( )1 1 1χδ ηminus minus minus

                            0R β χα δ η δ η

                            = ++ minus sdot

                            Life table of infection

                            001 06 0904 05 09 05 09

                            R = + =+ minus sdot

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            WSSV life cycle diagram3-host community

                            Susceptible

                            Susceptible

                            Susceptible Infected

                            Infected

                            Infected Dead

                            Dead

                            Dead

                            β31

                            χ31

                            χ11

                            β11λ1

                            λ2

                            λ3

                            micro1

                            micro2

                            micro3

                            β12 β21 χ21

                            α1 micro1

                            α2 micro2

                            α3 micro3

                            χ12

                            δ1 η1

                            δ2 η2

                            δ3 η3χ33

                            β33

                            χ13

                            β13

                            χ22

                            β32χ32

                            β22

                            χ23β23

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            ( ) ( )

                            ( ) ( )( ) ( )

                            ( ) ( )

                            ( ) ( )( ) ( )

                            3

                            1 11

                            3

                            1 1 11

                            1

                            3

                            2 21

                            3

                            2 2 21

                            2

                            3

                            1 1 0 0 0 0 0 0 0 0

                            1 1 1 1 0 0 0 0 0 0 0

                            0 1 1 1 0 0 0 0 0 0

                            0 0 0 1 1 0 0 0 0 0

                            0 0 0 1 1 1 1 0 0 0 0

                            0 0 0 0 1 1 1 0 0 0

                            0 0 0 0 0 0 1

                            i i

                            i i

                            i i

                            i i

                            I Di i

                            i

                            I Di i

                            i

                            I Di i

                            i

                            I Di i

                            i

                            β χ

                            β χ α

                            α δ η

                            β χ

                            β χ α

                            α δ η

                            β

                            =

                            =

                            =

                            =

                            minus sdot minus

                            minus minus sdot minus minus

                            minus minus sdot minus

                            minus sdot minus

                            minus minus sdot minus minus

                            minus minus sdot minus

                            minus

                            prod

                            prod

                            prod

                            prod

                            ( ) ( )

                            ( ) ( )( ) ( )

                            1

                            1

                            1

                            2

                            2

                            2

                            3

                            33

                            331

                            3

                            3 3 31

                            3

                            1 0 0

                            0 0 0 0 0 0 1 1 1 1 0

                            0 0 0 0 0 0 0 1 1 1

                            i i

                            i i

                            I Di i

                            i

                            I Di i

                            i

                            SIDSIDSIDχ

                            β χ α

                            α δ η

                            =

                            =

                            sdot

                            sdot minus

                            minus minus sdot minus minus minus minus sdot minus

                            prod

                            prod

                            WSSV 3-host community matrix model

                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                            • Slide Number 1
                            • Slide Number 2
                            • Slide Number 3
                            • Slide Number 4
                            • Slide Number 5
                            • Slide Number 6
                            • Slide Number 7
                            • Slide Number 8
                            • Slide Number 9
                            • Emergence of White spot syndrome virus
                            • Slide Number 11
                            • Slide Number 12
                            • Slide Number 13
                            • Hosts of WSSV
                            • WSSV Litopenaeus vannamei
                            • Slide Number 16
                            • Slide Number 17
                            • Slide Number 18
                            • Slide Number 19
                            • Slide Number 20
                            • Slide Number 21
                            • Slide Number 22
                            • Slide Number 23
                            • Slide Number 24
                            • Slide Number 25
                            • Slide Number 26
                            • Slide Number 27
                            • Slide Number 28
                            • Slide Number 29
                            • Slide Number 30
                            • Slide Number 31
                            • Slide Number 32
                            • Slide Number 33
                            • Slide Number 34
                            • Slide Number 35
                            • Slide Number 36
                            • Slide Number 37
                            • Slide Number 38

                              0

                              100

                              200

                              300

                              400

                              500

                              600

                              700

                              800

                              900

                              1000

                              0 3 6 9 12 15 18 21

                              Num

                              ber o

                              f shr

                              imp

                              Day

                              Weight 3 gDensity 550m3

                              Dose 003 bwfinal survival 000 003max daily mortality 10 06

                              WSSV Litopenaeus vannamei

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              Armasus cinereum

                              Uca panacea

                              Callinectes sapidus

                              Litopenaeus setiferus

                              Uca speciosa

                              Local decapods exposed to WSSV (China)

                              0 5 10 15 20 25 30Day

                              00

                              01

                              02

                              03

                              04

                              05

                              06

                              07

                              08

                              09

                              10

                              Surv

                              ival

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              Salt marshes

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              Mississippi sound

                              Jourdan

                              Biloxi

                              Pearl

                              Wolf

                              Lake Pontchartrain

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              Prevalence of WSSV in decapods of Ms Sound

                              Blue crab (Callinectes sapidus) (83 n=12)

                              Purple marsh crab (Sesarma reticulatum) (100 n=20)

                              Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

                              Panacea sand fiddler crab (U panacea) (108 n=1404)

                              Mudflat fiddler crab (U rapax) (230 n=88)

                              Spined fiddler crab (U spinicarpa) (357 n=98)

                              Red-jointed fiddler crab (U minax) (227 n=22)

                              Squareback marsh crab (Armasus cinereum) (267 n=30)

                              Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

                              White shrimp (Litopenaeus setiferus) (200 n=40)

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              Modeling WSSV in communities of decapods

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              WSSV life cycle diagram

                              λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

                              δ η

                              Susceptible Infected Dead

                              β

                              χ

                              λ

                              micro

                              α micro

                              ( ) ( )( )( ) ( )( ) ( ) ( )( )

                              ( ) ( )( ) ( ) ( )( )

                              1

                              1

                              1

                              1 1 1

                              1 1 1 1 1 1

                              1 1 1 1 1 1

                              t t

                              t t

                              I Dt t t

                              I Dt t t t

                              t t t t

                              S S S

                              I I S I

                              D D I D

                              β χ λ micro

                              β χ α micro

                              α micro η δ

                              +

                              +

                              +

                              = minus sdot minus minus minus + minus

                              = + sdot minus minus minus minus minus minus sdot minus sdot

                              = + minus minus sdot minus sdot minus minus minus sdot minus sdot

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              ( )1-

                              t t t tS S S Iβ

                              += sdot sdot

                              RossKermack-McKendrick

                              1- (1 )(1 ) t

                              t t tIS S S β+

                              = sdot minus minusReed-Frost

                              Black-Singer

                              Transmission terms - Force of infection λprobability of infection after contact

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              ( )1 1 Iλ β= minus minus

                              ( )Iλ β= sdot

                              Force of InfectionProbability of infection after contact with all infecteds

                              Ross

                              Reed-Frost

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              1 2 3 4 5 6 7

                              1 11 12 13 14 15 16 17

                              2 21 22 23 24 25 26 27

                              3 31 32 33 34 35 36 37

                              S S S S S S S

                              I SI SI SI SI SI SI SI

                              I SI SI SI SI SI SI SI

                              I SI SI SI SI SI SI SI

                              ( )1-

                              t t t tS S S Iβ

                              += sdot sdot

                              RossKermack-McKendrick

                              If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                              May have more infects than susceptiblesSome transmissions are to the same susceptible

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              2(1 )βminus

                              1 βminusβ 1 βminusβ

                              21 (1 )βminus minus

                              3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                              Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                              βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                              1- (1 )(1 ) t

                              t t tIS S S β+

                              = sdot minus minusReed-Frost

                              Black-Singer

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              Epidemic models ndash parameter estimates

                              ( ) ( )( )( ) ( )( )

                              ( ) ( )( )

                              1

                              1

                              1

                              1 1 1

                              1 1 1

                              1 1 1

                              t t

                              t t

                              I Dt t t

                              I Dt t t t

                              t t t t

                              S S S

                              I I S I

                              D D I D

                              β χ

                              β χ α

                              α η δ

                              +

                              +

                              +

                              = minus sdot minus minus minus

                              = + sdot minus minus minus minus sdot

                              = + sdot minus minus minus sdot minus sdot

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              If t = 1 and I0 = 1

                              1

                              0

                              1 ss

                              β

                              = minus

                              The proportion infected after exposure to one infected shrimpβ

                              Parameter estimates ndash transmission (β χ)

                              1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                              Solve for β

                              1

                              1

                              0

                              0

                              ln(1) 1 exp

                              tSS

                              = minus

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              Parameter estimates ndash transmission (β χ)

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              Parameter estimates ndash transmission (β χ)

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              Parameter estimates ndash transmission (β χ)

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                              Parameter estimates ndash transmission (β χ) and virulence (α)

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              1t t tI I I α+ = minus sdot

                              0

                              10

                              20

                              30

                              40

                              0 4 8 12 16Time (h)

                              Surv

                              ival

                              Parameter estimates ndash virulence (α)

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              decomposition

                              transmission decreases by 48 per day

                              y-intercept = 0499

                              0 4 8 12Days after death

                              00

                              02

                              04

                              06

                              08

                              10

                              Tran

                              smis

                              sion

                              χ

                              Parameter estimates ndash decay of transmission (δ)

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              Parameter estimates η consumption of shrimp

                              24 shrimp12 shrimp

                              6 shrimp1 shrimp

                              FedFasted

                              decrease per hr (day) decrease per hr (day)

                              0 10 20 30Time (hr)

                              00

                              02

                              04

                              06

                              08

                              10

                              Prop

                              ortio

                              n B

                              iom

                              ass

                              0 10 20 300 10 20 300 10 20 300 10 20 30

                              10

                              0 10 20 30Time (hr)

                              00

                              02

                              04

                              06

                              08

                              Prop

                              ortio

                              n B

                              iom

                              ass

                              0 10 20 300 10 20 300 10 20 300 10 20 30

                              17 (99)30 (100)34 (100)33 (100)

                              6 (79)11 (94)11 (94)12 (96)

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              Parameter estimates consumption (η) amp decomposition (δ) combined

                              048 + 100 - 10 048= 100

                              048 + 79 - 7948= 089

                              An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              State Duration Transmission Product

                              Live Infected β

                              Dead Infected χ( )( )

                              11 1 1δ ηminus minus minus

                              βα

                              ( )( )1 1 1χδ ηminus minus minus

                              0R β χα δ η δ η

                              = ++ minus sdot

                              Life table of infection

                              001 06 0904 05 09 05 09

                              R = + =+ minus sdot

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              WSSV life cycle diagram3-host community

                              Susceptible

                              Susceptible

                              Susceptible Infected

                              Infected

                              Infected Dead

                              Dead

                              Dead

                              β31

                              χ31

                              χ11

                              β11λ1

                              λ2

                              λ3

                              micro1

                              micro2

                              micro3

                              β12 β21 χ21

                              α1 micro1

                              α2 micro2

                              α3 micro3

                              χ12

                              δ1 η1

                              δ2 η2

                              δ3 η3χ33

                              β33

                              χ13

                              β13

                              χ22

                              β32χ32

                              β22

                              χ23β23

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              ( ) ( )

                              ( ) ( )( ) ( )

                              ( ) ( )

                              ( ) ( )( ) ( )

                              3

                              1 11

                              3

                              1 1 11

                              1

                              3

                              2 21

                              3

                              2 2 21

                              2

                              3

                              1 1 0 0 0 0 0 0 0 0

                              1 1 1 1 0 0 0 0 0 0 0

                              0 1 1 1 0 0 0 0 0 0

                              0 0 0 1 1 0 0 0 0 0

                              0 0 0 1 1 1 1 0 0 0 0

                              0 0 0 0 1 1 1 0 0 0

                              0 0 0 0 0 0 1

                              i i

                              i i

                              i i

                              i i

                              I Di i

                              i

                              I Di i

                              i

                              I Di i

                              i

                              I Di i

                              i

                              β χ

                              β χ α

                              α δ η

                              β χ

                              β χ α

                              α δ η

                              β

                              =

                              =

                              =

                              =

                              minus sdot minus

                              minus minus sdot minus minus

                              minus minus sdot minus

                              minus sdot minus

                              minus minus sdot minus minus

                              minus minus sdot minus

                              minus

                              prod

                              prod

                              prod

                              prod

                              ( ) ( )

                              ( ) ( )( ) ( )

                              1

                              1

                              1

                              2

                              2

                              2

                              3

                              33

                              331

                              3

                              3 3 31

                              3

                              1 0 0

                              0 0 0 0 0 0 1 1 1 1 0

                              0 0 0 0 0 0 0 1 1 1

                              i i

                              i i

                              I Di i

                              i

                              I Di i

                              i

                              SIDSIDSIDχ

                              β χ α

                              α δ η

                              =

                              =

                              sdot

                              sdot minus

                              minus minus sdot minus minus minus minus sdot minus

                              prod

                              prod

                              WSSV 3-host community matrix model

                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                              • Slide Number 1
                              • Slide Number 2
                              • Slide Number 3
                              • Slide Number 4
                              • Slide Number 5
                              • Slide Number 6
                              • Slide Number 7
                              • Slide Number 8
                              • Slide Number 9
                              • Emergence of White spot syndrome virus
                              • Slide Number 11
                              • Slide Number 12
                              • Slide Number 13
                              • Hosts of WSSV
                              • WSSV Litopenaeus vannamei
                              • Slide Number 16
                              • Slide Number 17
                              • Slide Number 18
                              • Slide Number 19
                              • Slide Number 20
                              • Slide Number 21
                              • Slide Number 22
                              • Slide Number 23
                              • Slide Number 24
                              • Slide Number 25
                              • Slide Number 26
                              • Slide Number 27
                              • Slide Number 28
                              • Slide Number 29
                              • Slide Number 30
                              • Slide Number 31
                              • Slide Number 32
                              • Slide Number 33
                              • Slide Number 34
                              • Slide Number 35
                              • Slide Number 36
                              • Slide Number 37
                              • Slide Number 38

                                Armasus cinereum

                                Uca panacea

                                Callinectes sapidus

                                Litopenaeus setiferus

                                Uca speciosa

                                Local decapods exposed to WSSV (China)

                                0 5 10 15 20 25 30Day

                                00

                                01

                                02

                                03

                                04

                                05

                                06

                                07

                                08

                                09

                                10

                                Surv

                                ival

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                Salt marshes

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                Mississippi sound

                                Jourdan

                                Biloxi

                                Pearl

                                Wolf

                                Lake Pontchartrain

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                Prevalence of WSSV in decapods of Ms Sound

                                Blue crab (Callinectes sapidus) (83 n=12)

                                Purple marsh crab (Sesarma reticulatum) (100 n=20)

                                Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

                                Panacea sand fiddler crab (U panacea) (108 n=1404)

                                Mudflat fiddler crab (U rapax) (230 n=88)

                                Spined fiddler crab (U spinicarpa) (357 n=98)

                                Red-jointed fiddler crab (U minax) (227 n=22)

                                Squareback marsh crab (Armasus cinereum) (267 n=30)

                                Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

                                White shrimp (Litopenaeus setiferus) (200 n=40)

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                Modeling WSSV in communities of decapods

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                WSSV life cycle diagram

                                λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

                                δ η

                                Susceptible Infected Dead

                                β

                                χ

                                λ

                                micro

                                α micro

                                ( ) ( )( )( ) ( )( ) ( ) ( )( )

                                ( ) ( )( ) ( ) ( )( )

                                1

                                1

                                1

                                1 1 1

                                1 1 1 1 1 1

                                1 1 1 1 1 1

                                t t

                                t t

                                I Dt t t

                                I Dt t t t

                                t t t t

                                S S S

                                I I S I

                                D D I D

                                β χ λ micro

                                β χ α micro

                                α micro η δ

                                +

                                +

                                +

                                = minus sdot minus minus minus + minus

                                = + sdot minus minus minus minus minus minus sdot minus sdot

                                = + minus minus sdot minus sdot minus minus minus sdot minus sdot

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                ( )1-

                                t t t tS S S Iβ

                                += sdot sdot

                                RossKermack-McKendrick

                                1- (1 )(1 ) t

                                t t tIS S S β+

                                = sdot minus minusReed-Frost

                                Black-Singer

                                Transmission terms - Force of infection λprobability of infection after contact

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                ( )1 1 Iλ β= minus minus

                                ( )Iλ β= sdot

                                Force of InfectionProbability of infection after contact with all infecteds

                                Ross

                                Reed-Frost

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                1 2 3 4 5 6 7

                                1 11 12 13 14 15 16 17

                                2 21 22 23 24 25 26 27

                                3 31 32 33 34 35 36 37

                                S S S S S S S

                                I SI SI SI SI SI SI SI

                                I SI SI SI SI SI SI SI

                                I SI SI SI SI SI SI SI

                                ( )1-

                                t t t tS S S Iβ

                                += sdot sdot

                                RossKermack-McKendrick

                                If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                                May have more infects than susceptiblesSome transmissions are to the same susceptible

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                2(1 )βminus

                                1 βminusβ 1 βminusβ

                                21 (1 )βminus minus

                                3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                                Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                                βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                                1- (1 )(1 ) t

                                t t tIS S S β+

                                = sdot minus minusReed-Frost

                                Black-Singer

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                Epidemic models ndash parameter estimates

                                ( ) ( )( )( ) ( )( )

                                ( ) ( )( )

                                1

                                1

                                1

                                1 1 1

                                1 1 1

                                1 1 1

                                t t

                                t t

                                I Dt t t

                                I Dt t t t

                                t t t t

                                S S S

                                I I S I

                                D D I D

                                β χ

                                β χ α

                                α η δ

                                +

                                +

                                +

                                = minus sdot minus minus minus

                                = + sdot minus minus minus minus sdot

                                = + sdot minus minus minus sdot minus sdot

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                If t = 1 and I0 = 1

                                1

                                0

                                1 ss

                                β

                                = minus

                                The proportion infected after exposure to one infected shrimpβ

                                Parameter estimates ndash transmission (β χ)

                                1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                                Solve for β

                                1

                                1

                                0

                                0

                                ln(1) 1 exp

                                tSS

                                = minus

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                Parameter estimates ndash transmission (β χ)

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                Parameter estimates ndash transmission (β χ)

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                Parameter estimates ndash transmission (β χ)

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                                Parameter estimates ndash transmission (β χ) and virulence (α)

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                1t t tI I I α+ = minus sdot

                                0

                                10

                                20

                                30

                                40

                                0 4 8 12 16Time (h)

                                Surv

                                ival

                                Parameter estimates ndash virulence (α)

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                decomposition

                                transmission decreases by 48 per day

                                y-intercept = 0499

                                0 4 8 12Days after death

                                00

                                02

                                04

                                06

                                08

                                10

                                Tran

                                smis

                                sion

                                χ

                                Parameter estimates ndash decay of transmission (δ)

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                Parameter estimates η consumption of shrimp

                                24 shrimp12 shrimp

                                6 shrimp1 shrimp

                                FedFasted

                                decrease per hr (day) decrease per hr (day)

                                0 10 20 30Time (hr)

                                00

                                02

                                04

                                06

                                08

                                10

                                Prop

                                ortio

                                n B

                                iom

                                ass

                                0 10 20 300 10 20 300 10 20 300 10 20 30

                                10

                                0 10 20 30Time (hr)

                                00

                                02

                                04

                                06

                                08

                                Prop

                                ortio

                                n B

                                iom

                                ass

                                0 10 20 300 10 20 300 10 20 300 10 20 30

                                17 (99)30 (100)34 (100)33 (100)

                                6 (79)11 (94)11 (94)12 (96)

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                Parameter estimates consumption (η) amp decomposition (δ) combined

                                048 + 100 - 10 048= 100

                                048 + 79 - 7948= 089

                                An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                State Duration Transmission Product

                                Live Infected β

                                Dead Infected χ( )( )

                                11 1 1δ ηminus minus minus

                                βα

                                ( )( )1 1 1χδ ηminus minus minus

                                0R β χα δ η δ η

                                = ++ minus sdot

                                Life table of infection

                                001 06 0904 05 09 05 09

                                R = + =+ minus sdot

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                WSSV life cycle diagram3-host community

                                Susceptible

                                Susceptible

                                Susceptible Infected

                                Infected

                                Infected Dead

                                Dead

                                Dead

                                β31

                                χ31

                                χ11

                                β11λ1

                                λ2

                                λ3

                                micro1

                                micro2

                                micro3

                                β12 β21 χ21

                                α1 micro1

                                α2 micro2

                                α3 micro3

                                χ12

                                δ1 η1

                                δ2 η2

                                δ3 η3χ33

                                β33

                                χ13

                                β13

                                χ22

                                β32χ32

                                β22

                                χ23β23

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                ( ) ( )

                                ( ) ( )( ) ( )

                                ( ) ( )

                                ( ) ( )( ) ( )

                                3

                                1 11

                                3

                                1 1 11

                                1

                                3

                                2 21

                                3

                                2 2 21

                                2

                                3

                                1 1 0 0 0 0 0 0 0 0

                                1 1 1 1 0 0 0 0 0 0 0

                                0 1 1 1 0 0 0 0 0 0

                                0 0 0 1 1 0 0 0 0 0

                                0 0 0 1 1 1 1 0 0 0 0

                                0 0 0 0 1 1 1 0 0 0

                                0 0 0 0 0 0 1

                                i i

                                i i

                                i i

                                i i

                                I Di i

                                i

                                I Di i

                                i

                                I Di i

                                i

                                I Di i

                                i

                                β χ

                                β χ α

                                α δ η

                                β χ

                                β χ α

                                α δ η

                                β

                                =

                                =

                                =

                                =

                                minus sdot minus

                                minus minus sdot minus minus

                                minus minus sdot minus

                                minus sdot minus

                                minus minus sdot minus minus

                                minus minus sdot minus

                                minus

                                prod

                                prod

                                prod

                                prod

                                ( ) ( )

                                ( ) ( )( ) ( )

                                1

                                1

                                1

                                2

                                2

                                2

                                3

                                33

                                331

                                3

                                3 3 31

                                3

                                1 0 0

                                0 0 0 0 0 0 1 1 1 1 0

                                0 0 0 0 0 0 0 1 1 1

                                i i

                                i i

                                I Di i

                                i

                                I Di i

                                i

                                SIDSIDSIDχ

                                β χ α

                                α δ η

                                =

                                =

                                sdot

                                sdot minus

                                minus minus sdot minus minus minus minus sdot minus

                                prod

                                prod

                                WSSV 3-host community matrix model

                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                • Slide Number 1
                                • Slide Number 2
                                • Slide Number 3
                                • Slide Number 4
                                • Slide Number 5
                                • Slide Number 6
                                • Slide Number 7
                                • Slide Number 8
                                • Slide Number 9
                                • Emergence of White spot syndrome virus
                                • Slide Number 11
                                • Slide Number 12
                                • Slide Number 13
                                • Hosts of WSSV
                                • WSSV Litopenaeus vannamei
                                • Slide Number 16
                                • Slide Number 17
                                • Slide Number 18
                                • Slide Number 19
                                • Slide Number 20
                                • Slide Number 21
                                • Slide Number 22
                                • Slide Number 23
                                • Slide Number 24
                                • Slide Number 25
                                • Slide Number 26
                                • Slide Number 27
                                • Slide Number 28
                                • Slide Number 29
                                • Slide Number 30
                                • Slide Number 31
                                • Slide Number 32
                                • Slide Number 33
                                • Slide Number 34
                                • Slide Number 35
                                • Slide Number 36
                                • Slide Number 37
                                • Slide Number 38

                                  Salt marshes

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  Mississippi sound

                                  Jourdan

                                  Biloxi

                                  Pearl

                                  Wolf

                                  Lake Pontchartrain

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  Prevalence of WSSV in decapods of Ms Sound

                                  Blue crab (Callinectes sapidus) (83 n=12)

                                  Purple marsh crab (Sesarma reticulatum) (100 n=20)

                                  Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

                                  Panacea sand fiddler crab (U panacea) (108 n=1404)

                                  Mudflat fiddler crab (U rapax) (230 n=88)

                                  Spined fiddler crab (U spinicarpa) (357 n=98)

                                  Red-jointed fiddler crab (U minax) (227 n=22)

                                  Squareback marsh crab (Armasus cinereum) (267 n=30)

                                  Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

                                  White shrimp (Litopenaeus setiferus) (200 n=40)

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  Modeling WSSV in communities of decapods

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  WSSV life cycle diagram

                                  λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

                                  δ η

                                  Susceptible Infected Dead

                                  β

                                  χ

                                  λ

                                  micro

                                  α micro

                                  ( ) ( )( )( ) ( )( ) ( ) ( )( )

                                  ( ) ( )( ) ( ) ( )( )

                                  1

                                  1

                                  1

                                  1 1 1

                                  1 1 1 1 1 1

                                  1 1 1 1 1 1

                                  t t

                                  t t

                                  I Dt t t

                                  I Dt t t t

                                  t t t t

                                  S S S

                                  I I S I

                                  D D I D

                                  β χ λ micro

                                  β χ α micro

                                  α micro η δ

                                  +

                                  +

                                  +

                                  = minus sdot minus minus minus + minus

                                  = + sdot minus minus minus minus minus minus sdot minus sdot

                                  = + minus minus sdot minus sdot minus minus minus sdot minus sdot

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  ( )1-

                                  t t t tS S S Iβ

                                  += sdot sdot

                                  RossKermack-McKendrick

                                  1- (1 )(1 ) t

                                  t t tIS S S β+

                                  = sdot minus minusReed-Frost

                                  Black-Singer

                                  Transmission terms - Force of infection λprobability of infection after contact

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  ( )1 1 Iλ β= minus minus

                                  ( )Iλ β= sdot

                                  Force of InfectionProbability of infection after contact with all infecteds

                                  Ross

                                  Reed-Frost

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  1 2 3 4 5 6 7

                                  1 11 12 13 14 15 16 17

                                  2 21 22 23 24 25 26 27

                                  3 31 32 33 34 35 36 37

                                  S S S S S S S

                                  I SI SI SI SI SI SI SI

                                  I SI SI SI SI SI SI SI

                                  I SI SI SI SI SI SI SI

                                  ( )1-

                                  t t t tS S S Iβ

                                  += sdot sdot

                                  RossKermack-McKendrick

                                  If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                                  May have more infects than susceptiblesSome transmissions are to the same susceptible

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  2(1 )βminus

                                  1 βminusβ 1 βminusβ

                                  21 (1 )βminus minus

                                  3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                                  Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                                  βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                                  1- (1 )(1 ) t

                                  t t tIS S S β+

                                  = sdot minus minusReed-Frost

                                  Black-Singer

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  Epidemic models ndash parameter estimates

                                  ( ) ( )( )( ) ( )( )

                                  ( ) ( )( )

                                  1

                                  1

                                  1

                                  1 1 1

                                  1 1 1

                                  1 1 1

                                  t t

                                  t t

                                  I Dt t t

                                  I Dt t t t

                                  t t t t

                                  S S S

                                  I I S I

                                  D D I D

                                  β χ

                                  β χ α

                                  α η δ

                                  +

                                  +

                                  +

                                  = minus sdot minus minus minus

                                  = + sdot minus minus minus minus sdot

                                  = + sdot minus minus minus sdot minus sdot

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  If t = 1 and I0 = 1

                                  1

                                  0

                                  1 ss

                                  β

                                  = minus

                                  The proportion infected after exposure to one infected shrimpβ

                                  Parameter estimates ndash transmission (β χ)

                                  1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                                  Solve for β

                                  1

                                  1

                                  0

                                  0

                                  ln(1) 1 exp

                                  tSS

                                  = minus

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  Parameter estimates ndash transmission (β χ)

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  Parameter estimates ndash transmission (β χ)

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  Parameter estimates ndash transmission (β χ)

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                                  Parameter estimates ndash transmission (β χ) and virulence (α)

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  1t t tI I I α+ = minus sdot

                                  0

                                  10

                                  20

                                  30

                                  40

                                  0 4 8 12 16Time (h)

                                  Surv

                                  ival

                                  Parameter estimates ndash virulence (α)

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  decomposition

                                  transmission decreases by 48 per day

                                  y-intercept = 0499

                                  0 4 8 12Days after death

                                  00

                                  02

                                  04

                                  06

                                  08

                                  10

                                  Tran

                                  smis

                                  sion

                                  χ

                                  Parameter estimates ndash decay of transmission (δ)

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  Parameter estimates η consumption of shrimp

                                  24 shrimp12 shrimp

                                  6 shrimp1 shrimp

                                  FedFasted

                                  decrease per hr (day) decrease per hr (day)

                                  0 10 20 30Time (hr)

                                  00

                                  02

                                  04

                                  06

                                  08

                                  10

                                  Prop

                                  ortio

                                  n B

                                  iom

                                  ass

                                  0 10 20 300 10 20 300 10 20 300 10 20 30

                                  10

                                  0 10 20 30Time (hr)

                                  00

                                  02

                                  04

                                  06

                                  08

                                  Prop

                                  ortio

                                  n B

                                  iom

                                  ass

                                  0 10 20 300 10 20 300 10 20 300 10 20 30

                                  17 (99)30 (100)34 (100)33 (100)

                                  6 (79)11 (94)11 (94)12 (96)

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  Parameter estimates consumption (η) amp decomposition (δ) combined

                                  048 + 100 - 10 048= 100

                                  048 + 79 - 7948= 089

                                  An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  State Duration Transmission Product

                                  Live Infected β

                                  Dead Infected χ( )( )

                                  11 1 1δ ηminus minus minus

                                  βα

                                  ( )( )1 1 1χδ ηminus minus minus

                                  0R β χα δ η δ η

                                  = ++ minus sdot

                                  Life table of infection

                                  001 06 0904 05 09 05 09

                                  R = + =+ minus sdot

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  WSSV life cycle diagram3-host community

                                  Susceptible

                                  Susceptible

                                  Susceptible Infected

                                  Infected

                                  Infected Dead

                                  Dead

                                  Dead

                                  β31

                                  χ31

                                  χ11

                                  β11λ1

                                  λ2

                                  λ3

                                  micro1

                                  micro2

                                  micro3

                                  β12 β21 χ21

                                  α1 micro1

                                  α2 micro2

                                  α3 micro3

                                  χ12

                                  δ1 η1

                                  δ2 η2

                                  δ3 η3χ33

                                  β33

                                  χ13

                                  β13

                                  χ22

                                  β32χ32

                                  β22

                                  χ23β23

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  ( ) ( )

                                  ( ) ( )( ) ( )

                                  ( ) ( )

                                  ( ) ( )( ) ( )

                                  3

                                  1 11

                                  3

                                  1 1 11

                                  1

                                  3

                                  2 21

                                  3

                                  2 2 21

                                  2

                                  3

                                  1 1 0 0 0 0 0 0 0 0

                                  1 1 1 1 0 0 0 0 0 0 0

                                  0 1 1 1 0 0 0 0 0 0

                                  0 0 0 1 1 0 0 0 0 0

                                  0 0 0 1 1 1 1 0 0 0 0

                                  0 0 0 0 1 1 1 0 0 0

                                  0 0 0 0 0 0 1

                                  i i

                                  i i

                                  i i

                                  i i

                                  I Di i

                                  i

                                  I Di i

                                  i

                                  I Di i

                                  i

                                  I Di i

                                  i

                                  β χ

                                  β χ α

                                  α δ η

                                  β χ

                                  β χ α

                                  α δ η

                                  β

                                  =

                                  =

                                  =

                                  =

                                  minus sdot minus

                                  minus minus sdot minus minus

                                  minus minus sdot minus

                                  minus sdot minus

                                  minus minus sdot minus minus

                                  minus minus sdot minus

                                  minus

                                  prod

                                  prod

                                  prod

                                  prod

                                  ( ) ( )

                                  ( ) ( )( ) ( )

                                  1

                                  1

                                  1

                                  2

                                  2

                                  2

                                  3

                                  33

                                  331

                                  3

                                  3 3 31

                                  3

                                  1 0 0

                                  0 0 0 0 0 0 1 1 1 1 0

                                  0 0 0 0 0 0 0 1 1 1

                                  i i

                                  i i

                                  I Di i

                                  i

                                  I Di i

                                  i

                                  SIDSIDSIDχ

                                  β χ α

                                  α δ η

                                  =

                                  =

                                  sdot

                                  sdot minus

                                  minus minus sdot minus minus minus minus sdot minus

                                  prod

                                  prod

                                  WSSV 3-host community matrix model

                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                  • Slide Number 1
                                  • Slide Number 2
                                  • Slide Number 3
                                  • Slide Number 4
                                  • Slide Number 5
                                  • Slide Number 6
                                  • Slide Number 7
                                  • Slide Number 8
                                  • Slide Number 9
                                  • Emergence of White spot syndrome virus
                                  • Slide Number 11
                                  • Slide Number 12
                                  • Slide Number 13
                                  • Hosts of WSSV
                                  • WSSV Litopenaeus vannamei
                                  • Slide Number 16
                                  • Slide Number 17
                                  • Slide Number 18
                                  • Slide Number 19
                                  • Slide Number 20
                                  • Slide Number 21
                                  • Slide Number 22
                                  • Slide Number 23
                                  • Slide Number 24
                                  • Slide Number 25
                                  • Slide Number 26
                                  • Slide Number 27
                                  • Slide Number 28
                                  • Slide Number 29
                                  • Slide Number 30
                                  • Slide Number 31
                                  • Slide Number 32
                                  • Slide Number 33
                                  • Slide Number 34
                                  • Slide Number 35
                                  • Slide Number 36
                                  • Slide Number 37
                                  • Slide Number 38

                                    Mississippi sound

                                    Jourdan

                                    Biloxi

                                    Pearl

                                    Wolf

                                    Lake Pontchartrain

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    Prevalence of WSSV in decapods of Ms Sound

                                    Blue crab (Callinectes sapidus) (83 n=12)

                                    Purple marsh crab (Sesarma reticulatum) (100 n=20)

                                    Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

                                    Panacea sand fiddler crab (U panacea) (108 n=1404)

                                    Mudflat fiddler crab (U rapax) (230 n=88)

                                    Spined fiddler crab (U spinicarpa) (357 n=98)

                                    Red-jointed fiddler crab (U minax) (227 n=22)

                                    Squareback marsh crab (Armasus cinereum) (267 n=30)

                                    Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

                                    White shrimp (Litopenaeus setiferus) (200 n=40)

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    Modeling WSSV in communities of decapods

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    WSSV life cycle diagram

                                    λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

                                    δ η

                                    Susceptible Infected Dead

                                    β

                                    χ

                                    λ

                                    micro

                                    α micro

                                    ( ) ( )( )( ) ( )( ) ( ) ( )( )

                                    ( ) ( )( ) ( ) ( )( )

                                    1

                                    1

                                    1

                                    1 1 1

                                    1 1 1 1 1 1

                                    1 1 1 1 1 1

                                    t t

                                    t t

                                    I Dt t t

                                    I Dt t t t

                                    t t t t

                                    S S S

                                    I I S I

                                    D D I D

                                    β χ λ micro

                                    β χ α micro

                                    α micro η δ

                                    +

                                    +

                                    +

                                    = minus sdot minus minus minus + minus

                                    = + sdot minus minus minus minus minus minus sdot minus sdot

                                    = + minus minus sdot minus sdot minus minus minus sdot minus sdot

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    ( )1-

                                    t t t tS S S Iβ

                                    += sdot sdot

                                    RossKermack-McKendrick

                                    1- (1 )(1 ) t

                                    t t tIS S S β+

                                    = sdot minus minusReed-Frost

                                    Black-Singer

                                    Transmission terms - Force of infection λprobability of infection after contact

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    ( )1 1 Iλ β= minus minus

                                    ( )Iλ β= sdot

                                    Force of InfectionProbability of infection after contact with all infecteds

                                    Ross

                                    Reed-Frost

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    1 2 3 4 5 6 7

                                    1 11 12 13 14 15 16 17

                                    2 21 22 23 24 25 26 27

                                    3 31 32 33 34 35 36 37

                                    S S S S S S S

                                    I SI SI SI SI SI SI SI

                                    I SI SI SI SI SI SI SI

                                    I SI SI SI SI SI SI SI

                                    ( )1-

                                    t t t tS S S Iβ

                                    += sdot sdot

                                    RossKermack-McKendrick

                                    If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                                    May have more infects than susceptiblesSome transmissions are to the same susceptible

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    2(1 )βminus

                                    1 βminusβ 1 βminusβ

                                    21 (1 )βminus minus

                                    3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                                    Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                                    βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                                    1- (1 )(1 ) t

                                    t t tIS S S β+

                                    = sdot minus minusReed-Frost

                                    Black-Singer

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    Epidemic models ndash parameter estimates

                                    ( ) ( )( )( ) ( )( )

                                    ( ) ( )( )

                                    1

                                    1

                                    1

                                    1 1 1

                                    1 1 1

                                    1 1 1

                                    t t

                                    t t

                                    I Dt t t

                                    I Dt t t t

                                    t t t t

                                    S S S

                                    I I S I

                                    D D I D

                                    β χ

                                    β χ α

                                    α η δ

                                    +

                                    +

                                    +

                                    = minus sdot minus minus minus

                                    = + sdot minus minus minus minus sdot

                                    = + sdot minus minus minus sdot minus sdot

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    If t = 1 and I0 = 1

                                    1

                                    0

                                    1 ss

                                    β

                                    = minus

                                    The proportion infected after exposure to one infected shrimpβ

                                    Parameter estimates ndash transmission (β χ)

                                    1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                                    Solve for β

                                    1

                                    1

                                    0

                                    0

                                    ln(1) 1 exp

                                    tSS

                                    = minus

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    Parameter estimates ndash transmission (β χ)

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    Parameter estimates ndash transmission (β χ)

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    Parameter estimates ndash transmission (β χ)

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                                    Parameter estimates ndash transmission (β χ) and virulence (α)

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    1t t tI I I α+ = minus sdot

                                    0

                                    10

                                    20

                                    30

                                    40

                                    0 4 8 12 16Time (h)

                                    Surv

                                    ival

                                    Parameter estimates ndash virulence (α)

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    decomposition

                                    transmission decreases by 48 per day

                                    y-intercept = 0499

                                    0 4 8 12Days after death

                                    00

                                    02

                                    04

                                    06

                                    08

                                    10

                                    Tran

                                    smis

                                    sion

                                    χ

                                    Parameter estimates ndash decay of transmission (δ)

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    Parameter estimates η consumption of shrimp

                                    24 shrimp12 shrimp

                                    6 shrimp1 shrimp

                                    FedFasted

                                    decrease per hr (day) decrease per hr (day)

                                    0 10 20 30Time (hr)

                                    00

                                    02

                                    04

                                    06

                                    08

                                    10

                                    Prop

                                    ortio

                                    n B

                                    iom

                                    ass

                                    0 10 20 300 10 20 300 10 20 300 10 20 30

                                    10

                                    0 10 20 30Time (hr)

                                    00

                                    02

                                    04

                                    06

                                    08

                                    Prop

                                    ortio

                                    n B

                                    iom

                                    ass

                                    0 10 20 300 10 20 300 10 20 300 10 20 30

                                    17 (99)30 (100)34 (100)33 (100)

                                    6 (79)11 (94)11 (94)12 (96)

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    Parameter estimates consumption (η) amp decomposition (δ) combined

                                    048 + 100 - 10 048= 100

                                    048 + 79 - 7948= 089

                                    An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    State Duration Transmission Product

                                    Live Infected β

                                    Dead Infected χ( )( )

                                    11 1 1δ ηminus minus minus

                                    βα

                                    ( )( )1 1 1χδ ηminus minus minus

                                    0R β χα δ η δ η

                                    = ++ minus sdot

                                    Life table of infection

                                    001 06 0904 05 09 05 09

                                    R = + =+ minus sdot

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    WSSV life cycle diagram3-host community

                                    Susceptible

                                    Susceptible

                                    Susceptible Infected

                                    Infected

                                    Infected Dead

                                    Dead

                                    Dead

                                    β31

                                    χ31

                                    χ11

                                    β11λ1

                                    λ2

                                    λ3

                                    micro1

                                    micro2

                                    micro3

                                    β12 β21 χ21

                                    α1 micro1

                                    α2 micro2

                                    α3 micro3

                                    χ12

                                    δ1 η1

                                    δ2 η2

                                    δ3 η3χ33

                                    β33

                                    χ13

                                    β13

                                    χ22

                                    β32χ32

                                    β22

                                    χ23β23

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    ( ) ( )

                                    ( ) ( )( ) ( )

                                    ( ) ( )

                                    ( ) ( )( ) ( )

                                    3

                                    1 11

                                    3

                                    1 1 11

                                    1

                                    3

                                    2 21

                                    3

                                    2 2 21

                                    2

                                    3

                                    1 1 0 0 0 0 0 0 0 0

                                    1 1 1 1 0 0 0 0 0 0 0

                                    0 1 1 1 0 0 0 0 0 0

                                    0 0 0 1 1 0 0 0 0 0

                                    0 0 0 1 1 1 1 0 0 0 0

                                    0 0 0 0 1 1 1 0 0 0

                                    0 0 0 0 0 0 1

                                    i i

                                    i i

                                    i i

                                    i i

                                    I Di i

                                    i

                                    I Di i

                                    i

                                    I Di i

                                    i

                                    I Di i

                                    i

                                    β χ

                                    β χ α

                                    α δ η

                                    β χ

                                    β χ α

                                    α δ η

                                    β

                                    =

                                    =

                                    =

                                    =

                                    minus sdot minus

                                    minus minus sdot minus minus

                                    minus minus sdot minus

                                    minus sdot minus

                                    minus minus sdot minus minus

                                    minus minus sdot minus

                                    minus

                                    prod

                                    prod

                                    prod

                                    prod

                                    ( ) ( )

                                    ( ) ( )( ) ( )

                                    1

                                    1

                                    1

                                    2

                                    2

                                    2

                                    3

                                    33

                                    331

                                    3

                                    3 3 31

                                    3

                                    1 0 0

                                    0 0 0 0 0 0 1 1 1 1 0

                                    0 0 0 0 0 0 0 1 1 1

                                    i i

                                    i i

                                    I Di i

                                    i

                                    I Di i

                                    i

                                    SIDSIDSIDχ

                                    β χ α

                                    α δ η

                                    =

                                    =

                                    sdot

                                    sdot minus

                                    minus minus sdot minus minus minus minus sdot minus

                                    prod

                                    prod

                                    WSSV 3-host community matrix model

                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                    • Slide Number 1
                                    • Slide Number 2
                                    • Slide Number 3
                                    • Slide Number 4
                                    • Slide Number 5
                                    • Slide Number 6
                                    • Slide Number 7
                                    • Slide Number 8
                                    • Slide Number 9
                                    • Emergence of White spot syndrome virus
                                    • Slide Number 11
                                    • Slide Number 12
                                    • Slide Number 13
                                    • Hosts of WSSV
                                    • WSSV Litopenaeus vannamei
                                    • Slide Number 16
                                    • Slide Number 17
                                    • Slide Number 18
                                    • Slide Number 19
                                    • Slide Number 20
                                    • Slide Number 21
                                    • Slide Number 22
                                    • Slide Number 23
                                    • Slide Number 24
                                    • Slide Number 25
                                    • Slide Number 26
                                    • Slide Number 27
                                    • Slide Number 28
                                    • Slide Number 29
                                    • Slide Number 30
                                    • Slide Number 31
                                    • Slide Number 32
                                    • Slide Number 33
                                    • Slide Number 34
                                    • Slide Number 35
                                    • Slide Number 36
                                    • Slide Number 37
                                    • Slide Number 38

                                      Prevalence of WSSV in decapods of Ms Sound

                                      Blue crab (Callinectes sapidus) (83 n=12)

                                      Purple marsh crab (Sesarma reticulatum) (100 n=20)

                                      Gulf mud fiddler crab (Uca longisignalis) (500 n=72)

                                      Panacea sand fiddler crab (U panacea) (108 n=1404)

                                      Mudflat fiddler crab (U rapax) (230 n=88)

                                      Spined fiddler crab (U spinicarpa) (357 n=98)

                                      Red-jointed fiddler crab (U minax) (227 n=22)

                                      Squareback marsh crab (Armasus cinereum) (267 n=30)

                                      Daggerblade grass shrimp (Palaemonetes pugio) (94 n=1244)

                                      White shrimp (Litopenaeus setiferus) (200 n=40)

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      Modeling WSSV in communities of decapods

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      WSSV life cycle diagram

                                      λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

                                      δ η

                                      Susceptible Infected Dead

                                      β

                                      χ

                                      λ

                                      micro

                                      α micro

                                      ( ) ( )( )( ) ( )( ) ( ) ( )( )

                                      ( ) ( )( ) ( ) ( )( )

                                      1

                                      1

                                      1

                                      1 1 1

                                      1 1 1 1 1 1

                                      1 1 1 1 1 1

                                      t t

                                      t t

                                      I Dt t t

                                      I Dt t t t

                                      t t t t

                                      S S S

                                      I I S I

                                      D D I D

                                      β χ λ micro

                                      β χ α micro

                                      α micro η δ

                                      +

                                      +

                                      +

                                      = minus sdot minus minus minus + minus

                                      = + sdot minus minus minus minus minus minus sdot minus sdot

                                      = + minus minus sdot minus sdot minus minus minus sdot minus sdot

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      ( )1-

                                      t t t tS S S Iβ

                                      += sdot sdot

                                      RossKermack-McKendrick

                                      1- (1 )(1 ) t

                                      t t tIS S S β+

                                      = sdot minus minusReed-Frost

                                      Black-Singer

                                      Transmission terms - Force of infection λprobability of infection after contact

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      ( )1 1 Iλ β= minus minus

                                      ( )Iλ β= sdot

                                      Force of InfectionProbability of infection after contact with all infecteds

                                      Ross

                                      Reed-Frost

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      1 2 3 4 5 6 7

                                      1 11 12 13 14 15 16 17

                                      2 21 22 23 24 25 26 27

                                      3 31 32 33 34 35 36 37

                                      S S S S S S S

                                      I SI SI SI SI SI SI SI

                                      I SI SI SI SI SI SI SI

                                      I SI SI SI SI SI SI SI

                                      ( )1-

                                      t t t tS S S Iβ

                                      += sdot sdot

                                      RossKermack-McKendrick

                                      If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                                      May have more infects than susceptiblesSome transmissions are to the same susceptible

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      2(1 )βminus

                                      1 βminusβ 1 βminusβ

                                      21 (1 )βminus minus

                                      3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                                      Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                                      βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                                      1- (1 )(1 ) t

                                      t t tIS S S β+

                                      = sdot minus minusReed-Frost

                                      Black-Singer

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      Epidemic models ndash parameter estimates

                                      ( ) ( )( )( ) ( )( )

                                      ( ) ( )( )

                                      1

                                      1

                                      1

                                      1 1 1

                                      1 1 1

                                      1 1 1

                                      t t

                                      t t

                                      I Dt t t

                                      I Dt t t t

                                      t t t t

                                      S S S

                                      I I S I

                                      D D I D

                                      β χ

                                      β χ α

                                      α η δ

                                      +

                                      +

                                      +

                                      = minus sdot minus minus minus

                                      = + sdot minus minus minus minus sdot

                                      = + sdot minus minus minus sdot minus sdot

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      If t = 1 and I0 = 1

                                      1

                                      0

                                      1 ss

                                      β

                                      = minus

                                      The proportion infected after exposure to one infected shrimpβ

                                      Parameter estimates ndash transmission (β χ)

                                      1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                                      Solve for β

                                      1

                                      1

                                      0

                                      0

                                      ln(1) 1 exp

                                      tSS

                                      = minus

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      Parameter estimates ndash transmission (β χ)

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      Parameter estimates ndash transmission (β χ)

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      Parameter estimates ndash transmission (β χ)

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                                      Parameter estimates ndash transmission (β χ) and virulence (α)

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      1t t tI I I α+ = minus sdot

                                      0

                                      10

                                      20

                                      30

                                      40

                                      0 4 8 12 16Time (h)

                                      Surv

                                      ival

                                      Parameter estimates ndash virulence (α)

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      decomposition

                                      transmission decreases by 48 per day

                                      y-intercept = 0499

                                      0 4 8 12Days after death

                                      00

                                      02

                                      04

                                      06

                                      08

                                      10

                                      Tran

                                      smis

                                      sion

                                      χ

                                      Parameter estimates ndash decay of transmission (δ)

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      Parameter estimates η consumption of shrimp

                                      24 shrimp12 shrimp

                                      6 shrimp1 shrimp

                                      FedFasted

                                      decrease per hr (day) decrease per hr (day)

                                      0 10 20 30Time (hr)

                                      00

                                      02

                                      04

                                      06

                                      08

                                      10

                                      Prop

                                      ortio

                                      n B

                                      iom

                                      ass

                                      0 10 20 300 10 20 300 10 20 300 10 20 30

                                      10

                                      0 10 20 30Time (hr)

                                      00

                                      02

                                      04

                                      06

                                      08

                                      Prop

                                      ortio

                                      n B

                                      iom

                                      ass

                                      0 10 20 300 10 20 300 10 20 300 10 20 30

                                      17 (99)30 (100)34 (100)33 (100)

                                      6 (79)11 (94)11 (94)12 (96)

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      Parameter estimates consumption (η) amp decomposition (δ) combined

                                      048 + 100 - 10 048= 100

                                      048 + 79 - 7948= 089

                                      An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      State Duration Transmission Product

                                      Live Infected β

                                      Dead Infected χ( )( )

                                      11 1 1δ ηminus minus minus

                                      βα

                                      ( )( )1 1 1χδ ηminus minus minus

                                      0R β χα δ η δ η

                                      = ++ minus sdot

                                      Life table of infection

                                      001 06 0904 05 09 05 09

                                      R = + =+ minus sdot

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      WSSV life cycle diagram3-host community

                                      Susceptible

                                      Susceptible

                                      Susceptible Infected

                                      Infected

                                      Infected Dead

                                      Dead

                                      Dead

                                      β31

                                      χ31

                                      χ11

                                      β11λ1

                                      λ2

                                      λ3

                                      micro1

                                      micro2

                                      micro3

                                      β12 β21 χ21

                                      α1 micro1

                                      α2 micro2

                                      α3 micro3

                                      χ12

                                      δ1 η1

                                      δ2 η2

                                      δ3 η3χ33

                                      β33

                                      χ13

                                      β13

                                      χ22

                                      β32χ32

                                      β22

                                      χ23β23

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      ( ) ( )

                                      ( ) ( )( ) ( )

                                      ( ) ( )

                                      ( ) ( )( ) ( )

                                      3

                                      1 11

                                      3

                                      1 1 11

                                      1

                                      3

                                      2 21

                                      3

                                      2 2 21

                                      2

                                      3

                                      1 1 0 0 0 0 0 0 0 0

                                      1 1 1 1 0 0 0 0 0 0 0

                                      0 1 1 1 0 0 0 0 0 0

                                      0 0 0 1 1 0 0 0 0 0

                                      0 0 0 1 1 1 1 0 0 0 0

                                      0 0 0 0 1 1 1 0 0 0

                                      0 0 0 0 0 0 1

                                      i i

                                      i i

                                      i i

                                      i i

                                      I Di i

                                      i

                                      I Di i

                                      i

                                      I Di i

                                      i

                                      I Di i

                                      i

                                      β χ

                                      β χ α

                                      α δ η

                                      β χ

                                      β χ α

                                      α δ η

                                      β

                                      =

                                      =

                                      =

                                      =

                                      minus sdot minus

                                      minus minus sdot minus minus

                                      minus minus sdot minus

                                      minus sdot minus

                                      minus minus sdot minus minus

                                      minus minus sdot minus

                                      minus

                                      prod

                                      prod

                                      prod

                                      prod

                                      ( ) ( )

                                      ( ) ( )( ) ( )

                                      1

                                      1

                                      1

                                      2

                                      2

                                      2

                                      3

                                      33

                                      331

                                      3

                                      3 3 31

                                      3

                                      1 0 0

                                      0 0 0 0 0 0 1 1 1 1 0

                                      0 0 0 0 0 0 0 1 1 1

                                      i i

                                      i i

                                      I Di i

                                      i

                                      I Di i

                                      i

                                      SIDSIDSIDχ

                                      β χ α

                                      α δ η

                                      =

                                      =

                                      sdot

                                      sdot minus

                                      minus minus sdot minus minus minus minus sdot minus

                                      prod

                                      prod

                                      WSSV 3-host community matrix model

                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                      • Slide Number 1
                                      • Slide Number 2
                                      • Slide Number 3
                                      • Slide Number 4
                                      • Slide Number 5
                                      • Slide Number 6
                                      • Slide Number 7
                                      • Slide Number 8
                                      • Slide Number 9
                                      • Emergence of White spot syndrome virus
                                      • Slide Number 11
                                      • Slide Number 12
                                      • Slide Number 13
                                      • Hosts of WSSV
                                      • WSSV Litopenaeus vannamei
                                      • Slide Number 16
                                      • Slide Number 17
                                      • Slide Number 18
                                      • Slide Number 19
                                      • Slide Number 20
                                      • Slide Number 21
                                      • Slide Number 22
                                      • Slide Number 23
                                      • Slide Number 24
                                      • Slide Number 25
                                      • Slide Number 26
                                      • Slide Number 27
                                      • Slide Number 28
                                      • Slide Number 29
                                      • Slide Number 30
                                      • Slide Number 31
                                      • Slide Number 32
                                      • Slide Number 33
                                      • Slide Number 34
                                      • Slide Number 35
                                      • Slide Number 36
                                      • Slide Number 37
                                      • Slide Number 38

                                        Modeling WSSV in communities of decapods

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        WSSV life cycle diagram

                                        λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

                                        δ η

                                        Susceptible Infected Dead

                                        β

                                        χ

                                        λ

                                        micro

                                        α micro

                                        ( ) ( )( )( ) ( )( ) ( ) ( )( )

                                        ( ) ( )( ) ( ) ( )( )

                                        1

                                        1

                                        1

                                        1 1 1

                                        1 1 1 1 1 1

                                        1 1 1 1 1 1

                                        t t

                                        t t

                                        I Dt t t

                                        I Dt t t t

                                        t t t t

                                        S S S

                                        I I S I

                                        D D I D

                                        β χ λ micro

                                        β χ α micro

                                        α micro η δ

                                        +

                                        +

                                        +

                                        = minus sdot minus minus minus + minus

                                        = + sdot minus minus minus minus minus minus sdot minus sdot

                                        = + minus minus sdot minus sdot minus minus minus sdot minus sdot

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        ( )1-

                                        t t t tS S S Iβ

                                        += sdot sdot

                                        RossKermack-McKendrick

                                        1- (1 )(1 ) t

                                        t t tIS S S β+

                                        = sdot minus minusReed-Frost

                                        Black-Singer

                                        Transmission terms - Force of infection λprobability of infection after contact

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        ( )1 1 Iλ β= minus minus

                                        ( )Iλ β= sdot

                                        Force of InfectionProbability of infection after contact with all infecteds

                                        Ross

                                        Reed-Frost

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        1 2 3 4 5 6 7

                                        1 11 12 13 14 15 16 17

                                        2 21 22 23 24 25 26 27

                                        3 31 32 33 34 35 36 37

                                        S S S S S S S

                                        I SI SI SI SI SI SI SI

                                        I SI SI SI SI SI SI SI

                                        I SI SI SI SI SI SI SI

                                        ( )1-

                                        t t t tS S S Iβ

                                        += sdot sdot

                                        RossKermack-McKendrick

                                        If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                                        May have more infects than susceptiblesSome transmissions are to the same susceptible

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        2(1 )βminus

                                        1 βminusβ 1 βminusβ

                                        21 (1 )βminus minus

                                        3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                                        Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                                        βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                                        1- (1 )(1 ) t

                                        t t tIS S S β+

                                        = sdot minus minusReed-Frost

                                        Black-Singer

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        Epidemic models ndash parameter estimates

                                        ( ) ( )( )( ) ( )( )

                                        ( ) ( )( )

                                        1

                                        1

                                        1

                                        1 1 1

                                        1 1 1

                                        1 1 1

                                        t t

                                        t t

                                        I Dt t t

                                        I Dt t t t

                                        t t t t

                                        S S S

                                        I I S I

                                        D D I D

                                        β χ

                                        β χ α

                                        α η δ

                                        +

                                        +

                                        +

                                        = minus sdot minus minus minus

                                        = + sdot minus minus minus minus sdot

                                        = + sdot minus minus minus sdot minus sdot

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        If t = 1 and I0 = 1

                                        1

                                        0

                                        1 ss

                                        β

                                        = minus

                                        The proportion infected after exposure to one infected shrimpβ

                                        Parameter estimates ndash transmission (β χ)

                                        1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                                        Solve for β

                                        1

                                        1

                                        0

                                        0

                                        ln(1) 1 exp

                                        tSS

                                        = minus

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        Parameter estimates ndash transmission (β χ)

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        Parameter estimates ndash transmission (β χ)

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        Parameter estimates ndash transmission (β χ)

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                                        Parameter estimates ndash transmission (β χ) and virulence (α)

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        1t t tI I I α+ = minus sdot

                                        0

                                        10

                                        20

                                        30

                                        40

                                        0 4 8 12 16Time (h)

                                        Surv

                                        ival

                                        Parameter estimates ndash virulence (α)

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        decomposition

                                        transmission decreases by 48 per day

                                        y-intercept = 0499

                                        0 4 8 12Days after death

                                        00

                                        02

                                        04

                                        06

                                        08

                                        10

                                        Tran

                                        smis

                                        sion

                                        χ

                                        Parameter estimates ndash decay of transmission (δ)

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        Parameter estimates η consumption of shrimp

                                        24 shrimp12 shrimp

                                        6 shrimp1 shrimp

                                        FedFasted

                                        decrease per hr (day) decrease per hr (day)

                                        0 10 20 30Time (hr)

                                        00

                                        02

                                        04

                                        06

                                        08

                                        10

                                        Prop

                                        ortio

                                        n B

                                        iom

                                        ass

                                        0 10 20 300 10 20 300 10 20 300 10 20 30

                                        10

                                        0 10 20 30Time (hr)

                                        00

                                        02

                                        04

                                        06

                                        08

                                        Prop

                                        ortio

                                        n B

                                        iom

                                        ass

                                        0 10 20 300 10 20 300 10 20 300 10 20 30

                                        17 (99)30 (100)34 (100)33 (100)

                                        6 (79)11 (94)11 (94)12 (96)

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        Parameter estimates consumption (η) amp decomposition (δ) combined

                                        048 + 100 - 10 048= 100

                                        048 + 79 - 7948= 089

                                        An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        State Duration Transmission Product

                                        Live Infected β

                                        Dead Infected χ( )( )

                                        11 1 1δ ηminus minus minus

                                        βα

                                        ( )( )1 1 1χδ ηminus minus minus

                                        0R β χα δ η δ η

                                        = ++ minus sdot

                                        Life table of infection

                                        001 06 0904 05 09 05 09

                                        R = + =+ minus sdot

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        WSSV life cycle diagram3-host community

                                        Susceptible

                                        Susceptible

                                        Susceptible Infected

                                        Infected

                                        Infected Dead

                                        Dead

                                        Dead

                                        β31

                                        χ31

                                        χ11

                                        β11λ1

                                        λ2

                                        λ3

                                        micro1

                                        micro2

                                        micro3

                                        β12 β21 χ21

                                        α1 micro1

                                        α2 micro2

                                        α3 micro3

                                        χ12

                                        δ1 η1

                                        δ2 η2

                                        δ3 η3χ33

                                        β33

                                        χ13

                                        β13

                                        χ22

                                        β32χ32

                                        β22

                                        χ23β23

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        ( ) ( )

                                        ( ) ( )( ) ( )

                                        ( ) ( )

                                        ( ) ( )( ) ( )

                                        3

                                        1 11

                                        3

                                        1 1 11

                                        1

                                        3

                                        2 21

                                        3

                                        2 2 21

                                        2

                                        3

                                        1 1 0 0 0 0 0 0 0 0

                                        1 1 1 1 0 0 0 0 0 0 0

                                        0 1 1 1 0 0 0 0 0 0

                                        0 0 0 1 1 0 0 0 0 0

                                        0 0 0 1 1 1 1 0 0 0 0

                                        0 0 0 0 1 1 1 0 0 0

                                        0 0 0 0 0 0 1

                                        i i

                                        i i

                                        i i

                                        i i

                                        I Di i

                                        i

                                        I Di i

                                        i

                                        I Di i

                                        i

                                        I Di i

                                        i

                                        β χ

                                        β χ α

                                        α δ η

                                        β χ

                                        β χ α

                                        α δ η

                                        β

                                        =

                                        =

                                        =

                                        =

                                        minus sdot minus

                                        minus minus sdot minus minus

                                        minus minus sdot minus

                                        minus sdot minus

                                        minus minus sdot minus minus

                                        minus minus sdot minus

                                        minus

                                        prod

                                        prod

                                        prod

                                        prod

                                        ( ) ( )

                                        ( ) ( )( ) ( )

                                        1

                                        1

                                        1

                                        2

                                        2

                                        2

                                        3

                                        33

                                        331

                                        3

                                        3 3 31

                                        3

                                        1 0 0

                                        0 0 0 0 0 0 1 1 1 1 0

                                        0 0 0 0 0 0 0 1 1 1

                                        i i

                                        i i

                                        I Di i

                                        i

                                        I Di i

                                        i

                                        SIDSIDSIDχ

                                        β χ α

                                        α δ η

                                        =

                                        =

                                        sdot

                                        sdot minus

                                        minus minus sdot minus minus minus minus sdot minus

                                        prod

                                        prod

                                        WSSV 3-host community matrix model

                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                        • Slide Number 1
                                        • Slide Number 2
                                        • Slide Number 3
                                        • Slide Number 4
                                        • Slide Number 5
                                        • Slide Number 6
                                        • Slide Number 7
                                        • Slide Number 8
                                        • Slide Number 9
                                        • Emergence of White spot syndrome virus
                                        • Slide Number 11
                                        • Slide Number 12
                                        • Slide Number 13
                                        • Hosts of WSSV
                                        • WSSV Litopenaeus vannamei
                                        • Slide Number 16
                                        • Slide Number 17
                                        • Slide Number 18
                                        • Slide Number 19
                                        • Slide Number 20
                                        • Slide Number 21
                                        • Slide Number 22
                                        • Slide Number 23
                                        • Slide Number 24
                                        • Slide Number 25
                                        • Slide Number 26
                                        • Slide Number 27
                                        • Slide Number 28
                                        • Slide Number 29
                                        • Slide Number 30
                                        • Slide Number 31
                                        • Slide Number 32
                                        • Slide Number 33
                                        • Slide Number 34
                                        • Slide Number 35
                                        • Slide Number 36
                                        • Slide Number 37
                                        • Slide Number 38

                                          WSSV life cycle diagram

                                          λ Host recruitmentβ TransmissionLiveχ TransmissionDeadα MortalityWSSVμ MortalityNaturalδ DecayCarcassη ConsumptionCarcass

                                          δ η

                                          Susceptible Infected Dead

                                          β

                                          χ

                                          λ

                                          micro

                                          α micro

                                          ( ) ( )( )( ) ( )( ) ( ) ( )( )

                                          ( ) ( )( ) ( ) ( )( )

                                          1

                                          1

                                          1

                                          1 1 1

                                          1 1 1 1 1 1

                                          1 1 1 1 1 1

                                          t t

                                          t t

                                          I Dt t t

                                          I Dt t t t

                                          t t t t

                                          S S S

                                          I I S I

                                          D D I D

                                          β χ λ micro

                                          β χ α micro

                                          α micro η δ

                                          +

                                          +

                                          +

                                          = minus sdot minus minus minus + minus

                                          = + sdot minus minus minus minus minus minus sdot minus sdot

                                          = + minus minus sdot minus sdot minus minus minus sdot minus sdot

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          ( )1-

                                          t t t tS S S Iβ

                                          += sdot sdot

                                          RossKermack-McKendrick

                                          1- (1 )(1 ) t

                                          t t tIS S S β+

                                          = sdot minus minusReed-Frost

                                          Black-Singer

                                          Transmission terms - Force of infection λprobability of infection after contact

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          ( )1 1 Iλ β= minus minus

                                          ( )Iλ β= sdot

                                          Force of InfectionProbability of infection after contact with all infecteds

                                          Ross

                                          Reed-Frost

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          1 2 3 4 5 6 7

                                          1 11 12 13 14 15 16 17

                                          2 21 22 23 24 25 26 27

                                          3 31 32 33 34 35 36 37

                                          S S S S S S S

                                          I SI SI SI SI SI SI SI

                                          I SI SI SI SI SI SI SI

                                          I SI SI SI SI SI SI SI

                                          ( )1-

                                          t t t tS S S Iβ

                                          += sdot sdot

                                          RossKermack-McKendrick

                                          If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                                          May have more infects than susceptiblesSome transmissions are to the same susceptible

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          2(1 )βminus

                                          1 βminusβ 1 βminusβ

                                          21 (1 )βminus minus

                                          3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                                          Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                                          βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                                          1- (1 )(1 ) t

                                          t t tIS S S β+

                                          = sdot minus minusReed-Frost

                                          Black-Singer

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          Epidemic models ndash parameter estimates

                                          ( ) ( )( )( ) ( )( )

                                          ( ) ( )( )

                                          1

                                          1

                                          1

                                          1 1 1

                                          1 1 1

                                          1 1 1

                                          t t

                                          t t

                                          I Dt t t

                                          I Dt t t t

                                          t t t t

                                          S S S

                                          I I S I

                                          D D I D

                                          β χ

                                          β χ α

                                          α η δ

                                          +

                                          +

                                          +

                                          = minus sdot minus minus minus

                                          = + sdot minus minus minus minus sdot

                                          = + sdot minus minus minus sdot minus sdot

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          If t = 1 and I0 = 1

                                          1

                                          0

                                          1 ss

                                          β

                                          = minus

                                          The proportion infected after exposure to one infected shrimpβ

                                          Parameter estimates ndash transmission (β χ)

                                          1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                                          Solve for β

                                          1

                                          1

                                          0

                                          0

                                          ln(1) 1 exp

                                          tSS

                                          = minus

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          Parameter estimates ndash transmission (β χ)

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          Parameter estimates ndash transmission (β χ)

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          Parameter estimates ndash transmission (β χ)

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                                          Parameter estimates ndash transmission (β χ) and virulence (α)

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          1t t tI I I α+ = minus sdot

                                          0

                                          10

                                          20

                                          30

                                          40

                                          0 4 8 12 16Time (h)

                                          Surv

                                          ival

                                          Parameter estimates ndash virulence (α)

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          decomposition

                                          transmission decreases by 48 per day

                                          y-intercept = 0499

                                          0 4 8 12Days after death

                                          00

                                          02

                                          04

                                          06

                                          08

                                          10

                                          Tran

                                          smis

                                          sion

                                          χ

                                          Parameter estimates ndash decay of transmission (δ)

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          Parameter estimates η consumption of shrimp

                                          24 shrimp12 shrimp

                                          6 shrimp1 shrimp

                                          FedFasted

                                          decrease per hr (day) decrease per hr (day)

                                          0 10 20 30Time (hr)

                                          00

                                          02

                                          04

                                          06

                                          08

                                          10

                                          Prop

                                          ortio

                                          n B

                                          iom

                                          ass

                                          0 10 20 300 10 20 300 10 20 300 10 20 30

                                          10

                                          0 10 20 30Time (hr)

                                          00

                                          02

                                          04

                                          06

                                          08

                                          Prop

                                          ortio

                                          n B

                                          iom

                                          ass

                                          0 10 20 300 10 20 300 10 20 300 10 20 30

                                          17 (99)30 (100)34 (100)33 (100)

                                          6 (79)11 (94)11 (94)12 (96)

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          Parameter estimates consumption (η) amp decomposition (δ) combined

                                          048 + 100 - 10 048= 100

                                          048 + 79 - 7948= 089

                                          An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          State Duration Transmission Product

                                          Live Infected β

                                          Dead Infected χ( )( )

                                          11 1 1δ ηminus minus minus

                                          βα

                                          ( )( )1 1 1χδ ηminus minus minus

                                          0R β χα δ η δ η

                                          = ++ minus sdot

                                          Life table of infection

                                          001 06 0904 05 09 05 09

                                          R = + =+ minus sdot

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          WSSV life cycle diagram3-host community

                                          Susceptible

                                          Susceptible

                                          Susceptible Infected

                                          Infected

                                          Infected Dead

                                          Dead

                                          Dead

                                          β31

                                          χ31

                                          χ11

                                          β11λ1

                                          λ2

                                          λ3

                                          micro1

                                          micro2

                                          micro3

                                          β12 β21 χ21

                                          α1 micro1

                                          α2 micro2

                                          α3 micro3

                                          χ12

                                          δ1 η1

                                          δ2 η2

                                          δ3 η3χ33

                                          β33

                                          χ13

                                          β13

                                          χ22

                                          β32χ32

                                          β22

                                          χ23β23

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          ( ) ( )

                                          ( ) ( )( ) ( )

                                          ( ) ( )

                                          ( ) ( )( ) ( )

                                          3

                                          1 11

                                          3

                                          1 1 11

                                          1

                                          3

                                          2 21

                                          3

                                          2 2 21

                                          2

                                          3

                                          1 1 0 0 0 0 0 0 0 0

                                          1 1 1 1 0 0 0 0 0 0 0

                                          0 1 1 1 0 0 0 0 0 0

                                          0 0 0 1 1 0 0 0 0 0

                                          0 0 0 1 1 1 1 0 0 0 0

                                          0 0 0 0 1 1 1 0 0 0

                                          0 0 0 0 0 0 1

                                          i i

                                          i i

                                          i i

                                          i i

                                          I Di i

                                          i

                                          I Di i

                                          i

                                          I Di i

                                          i

                                          I Di i

                                          i

                                          β χ

                                          β χ α

                                          α δ η

                                          β χ

                                          β χ α

                                          α δ η

                                          β

                                          =

                                          =

                                          =

                                          =

                                          minus sdot minus

                                          minus minus sdot minus minus

                                          minus minus sdot minus

                                          minus sdot minus

                                          minus minus sdot minus minus

                                          minus minus sdot minus

                                          minus

                                          prod

                                          prod

                                          prod

                                          prod

                                          ( ) ( )

                                          ( ) ( )( ) ( )

                                          1

                                          1

                                          1

                                          2

                                          2

                                          2

                                          3

                                          33

                                          331

                                          3

                                          3 3 31

                                          3

                                          1 0 0

                                          0 0 0 0 0 0 1 1 1 1 0

                                          0 0 0 0 0 0 0 1 1 1

                                          i i

                                          i i

                                          I Di i

                                          i

                                          I Di i

                                          i

                                          SIDSIDSIDχ

                                          β χ α

                                          α δ η

                                          =

                                          =

                                          sdot

                                          sdot minus

                                          minus minus sdot minus minus minus minus sdot minus

                                          prod

                                          prod

                                          WSSV 3-host community matrix model

                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                          • Slide Number 1
                                          • Slide Number 2
                                          • Slide Number 3
                                          • Slide Number 4
                                          • Slide Number 5
                                          • Slide Number 6
                                          • Slide Number 7
                                          • Slide Number 8
                                          • Slide Number 9
                                          • Emergence of White spot syndrome virus
                                          • Slide Number 11
                                          • Slide Number 12
                                          • Slide Number 13
                                          • Hosts of WSSV
                                          • WSSV Litopenaeus vannamei
                                          • Slide Number 16
                                          • Slide Number 17
                                          • Slide Number 18
                                          • Slide Number 19
                                          • Slide Number 20
                                          • Slide Number 21
                                          • Slide Number 22
                                          • Slide Number 23
                                          • Slide Number 24
                                          • Slide Number 25
                                          • Slide Number 26
                                          • Slide Number 27
                                          • Slide Number 28
                                          • Slide Number 29
                                          • Slide Number 30
                                          • Slide Number 31
                                          • Slide Number 32
                                          • Slide Number 33
                                          • Slide Number 34
                                          • Slide Number 35
                                          • Slide Number 36
                                          • Slide Number 37
                                          • Slide Number 38

                                            ( )1-

                                            t t t tS S S Iβ

                                            += sdot sdot

                                            RossKermack-McKendrick

                                            1- (1 )(1 ) t

                                            t t tIS S S β+

                                            = sdot minus minusReed-Frost

                                            Black-Singer

                                            Transmission terms - Force of infection λprobability of infection after contact

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            ( )1 1 Iλ β= minus minus

                                            ( )Iλ β= sdot

                                            Force of InfectionProbability of infection after contact with all infecteds

                                            Ross

                                            Reed-Frost

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            1 2 3 4 5 6 7

                                            1 11 12 13 14 15 16 17

                                            2 21 22 23 24 25 26 27

                                            3 31 32 33 34 35 36 37

                                            S S S S S S S

                                            I SI SI SI SI SI SI SI

                                            I SI SI SI SI SI SI SI

                                            I SI SI SI SI SI SI SI

                                            ( )1-

                                            t t t tS S S Iβ

                                            += sdot sdot

                                            RossKermack-McKendrick

                                            If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                                            May have more infects than susceptiblesSome transmissions are to the same susceptible

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            2(1 )βminus

                                            1 βminusβ 1 βminusβ

                                            21 (1 )βminus minus

                                            3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                                            Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                                            βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                                            1- (1 )(1 ) t

                                            t t tIS S S β+

                                            = sdot minus minusReed-Frost

                                            Black-Singer

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            Epidemic models ndash parameter estimates

                                            ( ) ( )( )( ) ( )( )

                                            ( ) ( )( )

                                            1

                                            1

                                            1

                                            1 1 1

                                            1 1 1

                                            1 1 1

                                            t t

                                            t t

                                            I Dt t t

                                            I Dt t t t

                                            t t t t

                                            S S S

                                            I I S I

                                            D D I D

                                            β χ

                                            β χ α

                                            α η δ

                                            +

                                            +

                                            +

                                            = minus sdot minus minus minus

                                            = + sdot minus minus minus minus sdot

                                            = + sdot minus minus minus sdot minus sdot

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            If t = 1 and I0 = 1

                                            1

                                            0

                                            1 ss

                                            β

                                            = minus

                                            The proportion infected after exposure to one infected shrimpβ

                                            Parameter estimates ndash transmission (β χ)

                                            1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                                            Solve for β

                                            1

                                            1

                                            0

                                            0

                                            ln(1) 1 exp

                                            tSS

                                            = minus

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            Parameter estimates ndash transmission (β χ)

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            Parameter estimates ndash transmission (β χ)

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            Parameter estimates ndash transmission (β χ)

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                                            Parameter estimates ndash transmission (β χ) and virulence (α)

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            1t t tI I I α+ = minus sdot

                                            0

                                            10

                                            20

                                            30

                                            40

                                            0 4 8 12 16Time (h)

                                            Surv

                                            ival

                                            Parameter estimates ndash virulence (α)

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            decomposition

                                            transmission decreases by 48 per day

                                            y-intercept = 0499

                                            0 4 8 12Days after death

                                            00

                                            02

                                            04

                                            06

                                            08

                                            10

                                            Tran

                                            smis

                                            sion

                                            χ

                                            Parameter estimates ndash decay of transmission (δ)

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            Parameter estimates η consumption of shrimp

                                            24 shrimp12 shrimp

                                            6 shrimp1 shrimp

                                            FedFasted

                                            decrease per hr (day) decrease per hr (day)

                                            0 10 20 30Time (hr)

                                            00

                                            02

                                            04

                                            06

                                            08

                                            10

                                            Prop

                                            ortio

                                            n B

                                            iom

                                            ass

                                            0 10 20 300 10 20 300 10 20 300 10 20 30

                                            10

                                            0 10 20 30Time (hr)

                                            00

                                            02

                                            04

                                            06

                                            08

                                            Prop

                                            ortio

                                            n B

                                            iom

                                            ass

                                            0 10 20 300 10 20 300 10 20 300 10 20 30

                                            17 (99)30 (100)34 (100)33 (100)

                                            6 (79)11 (94)11 (94)12 (96)

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            Parameter estimates consumption (η) amp decomposition (δ) combined

                                            048 + 100 - 10 048= 100

                                            048 + 79 - 7948= 089

                                            An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            State Duration Transmission Product

                                            Live Infected β

                                            Dead Infected χ( )( )

                                            11 1 1δ ηminus minus minus

                                            βα

                                            ( )( )1 1 1χδ ηminus minus minus

                                            0R β χα δ η δ η

                                            = ++ minus sdot

                                            Life table of infection

                                            001 06 0904 05 09 05 09

                                            R = + =+ minus sdot

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            WSSV life cycle diagram3-host community

                                            Susceptible

                                            Susceptible

                                            Susceptible Infected

                                            Infected

                                            Infected Dead

                                            Dead

                                            Dead

                                            β31

                                            χ31

                                            χ11

                                            β11λ1

                                            λ2

                                            λ3

                                            micro1

                                            micro2

                                            micro3

                                            β12 β21 χ21

                                            α1 micro1

                                            α2 micro2

                                            α3 micro3

                                            χ12

                                            δ1 η1

                                            δ2 η2

                                            δ3 η3χ33

                                            β33

                                            χ13

                                            β13

                                            χ22

                                            β32χ32

                                            β22

                                            χ23β23

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            ( ) ( )

                                            ( ) ( )( ) ( )

                                            ( ) ( )

                                            ( ) ( )( ) ( )

                                            3

                                            1 11

                                            3

                                            1 1 11

                                            1

                                            3

                                            2 21

                                            3

                                            2 2 21

                                            2

                                            3

                                            1 1 0 0 0 0 0 0 0 0

                                            1 1 1 1 0 0 0 0 0 0 0

                                            0 1 1 1 0 0 0 0 0 0

                                            0 0 0 1 1 0 0 0 0 0

                                            0 0 0 1 1 1 1 0 0 0 0

                                            0 0 0 0 1 1 1 0 0 0

                                            0 0 0 0 0 0 1

                                            i i

                                            i i

                                            i i

                                            i i

                                            I Di i

                                            i

                                            I Di i

                                            i

                                            I Di i

                                            i

                                            I Di i

                                            i

                                            β χ

                                            β χ α

                                            α δ η

                                            β χ

                                            β χ α

                                            α δ η

                                            β

                                            =

                                            =

                                            =

                                            =

                                            minus sdot minus

                                            minus minus sdot minus minus

                                            minus minus sdot minus

                                            minus sdot minus

                                            minus minus sdot minus minus

                                            minus minus sdot minus

                                            minus

                                            prod

                                            prod

                                            prod

                                            prod

                                            ( ) ( )

                                            ( ) ( )( ) ( )

                                            1

                                            1

                                            1

                                            2

                                            2

                                            2

                                            3

                                            33

                                            331

                                            3

                                            3 3 31

                                            3

                                            1 0 0

                                            0 0 0 0 0 0 1 1 1 1 0

                                            0 0 0 0 0 0 0 1 1 1

                                            i i

                                            i i

                                            I Di i

                                            i

                                            I Di i

                                            i

                                            SIDSIDSIDχ

                                            β χ α

                                            α δ η

                                            =

                                            =

                                            sdot

                                            sdot minus

                                            minus minus sdot minus minus minus minus sdot minus

                                            prod

                                            prod

                                            WSSV 3-host community matrix model

                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                            • Slide Number 1
                                            • Slide Number 2
                                            • Slide Number 3
                                            • Slide Number 4
                                            • Slide Number 5
                                            • Slide Number 6
                                            • Slide Number 7
                                            • Slide Number 8
                                            • Slide Number 9
                                            • Emergence of White spot syndrome virus
                                            • Slide Number 11
                                            • Slide Number 12
                                            • Slide Number 13
                                            • Hosts of WSSV
                                            • WSSV Litopenaeus vannamei
                                            • Slide Number 16
                                            • Slide Number 17
                                            • Slide Number 18
                                            • Slide Number 19
                                            • Slide Number 20
                                            • Slide Number 21
                                            • Slide Number 22
                                            • Slide Number 23
                                            • Slide Number 24
                                            • Slide Number 25
                                            • Slide Number 26
                                            • Slide Number 27
                                            • Slide Number 28
                                            • Slide Number 29
                                            • Slide Number 30
                                            • Slide Number 31
                                            • Slide Number 32
                                            • Slide Number 33
                                            • Slide Number 34
                                            • Slide Number 35
                                            • Slide Number 36
                                            • Slide Number 37
                                            • Slide Number 38

                                              ( )1 1 Iλ β= minus minus

                                              ( )Iλ β= sdot

                                              Force of InfectionProbability of infection after contact with all infecteds

                                              Ross

                                              Reed-Frost

                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                              1 2 3 4 5 6 7

                                              1 11 12 13 14 15 16 17

                                              2 21 22 23 24 25 26 27

                                              3 31 32 33 34 35 36 37

                                              S S S S S S S

                                              I SI SI SI SI SI SI SI

                                              I SI SI SI SI SI SI SI

                                              I SI SI SI SI SI SI SI

                                              ( )1-

                                              t t t tS S S Iβ

                                              += sdot sdot

                                              RossKermack-McKendrick

                                              If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                                              May have more infects than susceptiblesSome transmissions are to the same susceptible

                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                              2(1 )βminus

                                              1 βminusβ 1 βminusβ

                                              21 (1 )βminus minus

                                              3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                                              Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                                              βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                                              1- (1 )(1 ) t

                                              t t tIS S S β+

                                              = sdot minus minusReed-Frost

                                              Black-Singer

                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                              Epidemic models ndash parameter estimates

                                              ( ) ( )( )( ) ( )( )

                                              ( ) ( )( )

                                              1

                                              1

                                              1

                                              1 1 1

                                              1 1 1

                                              1 1 1

                                              t t

                                              t t

                                              I Dt t t

                                              I Dt t t t

                                              t t t t

                                              S S S

                                              I I S I

                                              D D I D

                                              β χ

                                              β χ α

                                              α η δ

                                              +

                                              +

                                              +

                                              = minus sdot minus minus minus

                                              = + sdot minus minus minus minus sdot

                                              = + sdot minus minus minus sdot minus sdot

                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                              If t = 1 and I0 = 1

                                              1

                                              0

                                              1 ss

                                              β

                                              = minus

                                              The proportion infected after exposure to one infected shrimpβ

                                              Parameter estimates ndash transmission (β χ)

                                              1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                                              Solve for β

                                              1

                                              1

                                              0

                                              0

                                              ln(1) 1 exp

                                              tSS

                                              = minus

                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                              Parameter estimates ndash transmission (β χ)

                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                              Parameter estimates ndash transmission (β χ)

                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                              Parameter estimates ndash transmission (β χ)

                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                              bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                                              Parameter estimates ndash transmission (β χ) and virulence (α)

                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                              1t t tI I I α+ = minus sdot

                                              0

                                              10

                                              20

                                              30

                                              40

                                              0 4 8 12 16Time (h)

                                              Surv

                                              ival

                                              Parameter estimates ndash virulence (α)

                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                              decomposition

                                              transmission decreases by 48 per day

                                              y-intercept = 0499

                                              0 4 8 12Days after death

                                              00

                                              02

                                              04

                                              06

                                              08

                                              10

                                              Tran

                                              smis

                                              sion

                                              χ

                                              Parameter estimates ndash decay of transmission (δ)

                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                              Parameter estimates η consumption of shrimp

                                              24 shrimp12 shrimp

                                              6 shrimp1 shrimp

                                              FedFasted

                                              decrease per hr (day) decrease per hr (day)

                                              0 10 20 30Time (hr)

                                              00

                                              02

                                              04

                                              06

                                              08

                                              10

                                              Prop

                                              ortio

                                              n B

                                              iom

                                              ass

                                              0 10 20 300 10 20 300 10 20 300 10 20 30

                                              10

                                              0 10 20 30Time (hr)

                                              00

                                              02

                                              04

                                              06

                                              08

                                              Prop

                                              ortio

                                              n B

                                              iom

                                              ass

                                              0 10 20 300 10 20 300 10 20 300 10 20 30

                                              17 (99)30 (100)34 (100)33 (100)

                                              6 (79)11 (94)11 (94)12 (96)

                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                              Parameter estimates consumption (η) amp decomposition (δ) combined

                                              048 + 100 - 10 048= 100

                                              048 + 79 - 7948= 089

                                              An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                              State Duration Transmission Product

                                              Live Infected β

                                              Dead Infected χ( )( )

                                              11 1 1δ ηminus minus minus

                                              βα

                                              ( )( )1 1 1χδ ηminus minus minus

                                              0R β χα δ η δ η

                                              = ++ minus sdot

                                              Life table of infection

                                              001 06 0904 05 09 05 09

                                              R = + =+ minus sdot

                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                              WSSV life cycle diagram3-host community

                                              Susceptible

                                              Susceptible

                                              Susceptible Infected

                                              Infected

                                              Infected Dead

                                              Dead

                                              Dead

                                              β31

                                              χ31

                                              χ11

                                              β11λ1

                                              λ2

                                              λ3

                                              micro1

                                              micro2

                                              micro3

                                              β12 β21 χ21

                                              α1 micro1

                                              α2 micro2

                                              α3 micro3

                                              χ12

                                              δ1 η1

                                              δ2 η2

                                              δ3 η3χ33

                                              β33

                                              χ13

                                              β13

                                              χ22

                                              β32χ32

                                              β22

                                              χ23β23

                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                              ( ) ( )

                                              ( ) ( )( ) ( )

                                              ( ) ( )

                                              ( ) ( )( ) ( )

                                              3

                                              1 11

                                              3

                                              1 1 11

                                              1

                                              3

                                              2 21

                                              3

                                              2 2 21

                                              2

                                              3

                                              1 1 0 0 0 0 0 0 0 0

                                              1 1 1 1 0 0 0 0 0 0 0

                                              0 1 1 1 0 0 0 0 0 0

                                              0 0 0 1 1 0 0 0 0 0

                                              0 0 0 1 1 1 1 0 0 0 0

                                              0 0 0 0 1 1 1 0 0 0

                                              0 0 0 0 0 0 1

                                              i i

                                              i i

                                              i i

                                              i i

                                              I Di i

                                              i

                                              I Di i

                                              i

                                              I Di i

                                              i

                                              I Di i

                                              i

                                              β χ

                                              β χ α

                                              α δ η

                                              β χ

                                              β χ α

                                              α δ η

                                              β

                                              =

                                              =

                                              =

                                              =

                                              minus sdot minus

                                              minus minus sdot minus minus

                                              minus minus sdot minus

                                              minus sdot minus

                                              minus minus sdot minus minus

                                              minus minus sdot minus

                                              minus

                                              prod

                                              prod

                                              prod

                                              prod

                                              ( ) ( )

                                              ( ) ( )( ) ( )

                                              1

                                              1

                                              1

                                              2

                                              2

                                              2

                                              3

                                              33

                                              331

                                              3

                                              3 3 31

                                              3

                                              1 0 0

                                              0 0 0 0 0 0 1 1 1 1 0

                                              0 0 0 0 0 0 0 1 1 1

                                              i i

                                              i i

                                              I Di i

                                              i

                                              I Di i

                                              i

                                              SIDSIDSIDχ

                                              β χ α

                                              α δ η

                                              =

                                              =

                                              sdot

                                              sdot minus

                                              minus minus sdot minus minus minus minus sdot minus

                                              prod

                                              prod

                                              WSSV 3-host community matrix model

                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                              • Slide Number 1
                                              • Slide Number 2
                                              • Slide Number 3
                                              • Slide Number 4
                                              • Slide Number 5
                                              • Slide Number 6
                                              • Slide Number 7
                                              • Slide Number 8
                                              • Slide Number 9
                                              • Emergence of White spot syndrome virus
                                              • Slide Number 11
                                              • Slide Number 12
                                              • Slide Number 13
                                              • Hosts of WSSV
                                              • WSSV Litopenaeus vannamei
                                              • Slide Number 16
                                              • Slide Number 17
                                              • Slide Number 18
                                              • Slide Number 19
                                              • Slide Number 20
                                              • Slide Number 21
                                              • Slide Number 22
                                              • Slide Number 23
                                              • Slide Number 24
                                              • Slide Number 25
                                              • Slide Number 26
                                              • Slide Number 27
                                              • Slide Number 28
                                              • Slide Number 29
                                              • Slide Number 30
                                              • Slide Number 31
                                              • Slide Number 32
                                              • Slide Number 33
                                              • Slide Number 34
                                              • Slide Number 35
                                              • Slide Number 36
                                              • Slide Number 37
                                              • Slide Number 38

                                                1 2 3 4 5 6 7

                                                1 11 12 13 14 15 16 17

                                                2 21 22 23 24 25 26 27

                                                3 31 32 33 34 35 36 37

                                                S S S S S S S

                                                I SI SI SI SI SI SI SI

                                                I SI SI SI SI SI SI SI

                                                I SI SI SI SI SI SI SI

                                                ( )1-

                                                t t t tS S S Iβ

                                                += sdot sdot

                                                RossKermack-McKendrick

                                                If β is probability of transmission after one S contacts one IThen SI is number of contacts between every S and every I

                                                May have more infects than susceptiblesSome transmissions are to the same susceptible

                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                2(1 )βminus

                                                1 βminusβ 1 βminusβ

                                                21 (1 )βminus minus

                                                3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                                                Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                                                βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                                                1- (1 )(1 ) t

                                                t t tIS S S β+

                                                = sdot minus minusReed-Frost

                                                Black-Singer

                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                Epidemic models ndash parameter estimates

                                                ( ) ( )( )( ) ( )( )

                                                ( ) ( )( )

                                                1

                                                1

                                                1

                                                1 1 1

                                                1 1 1

                                                1 1 1

                                                t t

                                                t t

                                                I Dt t t

                                                I Dt t t t

                                                t t t t

                                                S S S

                                                I I S I

                                                D D I D

                                                β χ

                                                β χ α

                                                α η δ

                                                +

                                                +

                                                +

                                                = minus sdot minus minus minus

                                                = + sdot minus minus minus minus sdot

                                                = + sdot minus minus minus sdot minus sdot

                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                If t = 1 and I0 = 1

                                                1

                                                0

                                                1 ss

                                                β

                                                = minus

                                                The proportion infected after exposure to one infected shrimpβ

                                                Parameter estimates ndash transmission (β χ)

                                                1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                                                Solve for β

                                                1

                                                1

                                                0

                                                0

                                                ln(1) 1 exp

                                                tSS

                                                = minus

                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                Parameter estimates ndash transmission (β χ)

                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                Parameter estimates ndash transmission (β χ)

                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                Parameter estimates ndash transmission (β χ)

                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                                                Parameter estimates ndash transmission (β χ) and virulence (α)

                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                1t t tI I I α+ = minus sdot

                                                0

                                                10

                                                20

                                                30

                                                40

                                                0 4 8 12 16Time (h)

                                                Surv

                                                ival

                                                Parameter estimates ndash virulence (α)

                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                decomposition

                                                transmission decreases by 48 per day

                                                y-intercept = 0499

                                                0 4 8 12Days after death

                                                00

                                                02

                                                04

                                                06

                                                08

                                                10

                                                Tran

                                                smis

                                                sion

                                                χ

                                                Parameter estimates ndash decay of transmission (δ)

                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                Parameter estimates η consumption of shrimp

                                                24 shrimp12 shrimp

                                                6 shrimp1 shrimp

                                                FedFasted

                                                decrease per hr (day) decrease per hr (day)

                                                0 10 20 30Time (hr)

                                                00

                                                02

                                                04

                                                06

                                                08

                                                10

                                                Prop

                                                ortio

                                                n B

                                                iom

                                                ass

                                                0 10 20 300 10 20 300 10 20 300 10 20 30

                                                10

                                                0 10 20 30Time (hr)

                                                00

                                                02

                                                04

                                                06

                                                08

                                                Prop

                                                ortio

                                                n B

                                                iom

                                                ass

                                                0 10 20 300 10 20 300 10 20 300 10 20 30

                                                17 (99)30 (100)34 (100)33 (100)

                                                6 (79)11 (94)11 (94)12 (96)

                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                Parameter estimates consumption (η) amp decomposition (δ) combined

                                                048 + 100 - 10 048= 100

                                                048 + 79 - 7948= 089

                                                An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                State Duration Transmission Product

                                                Live Infected β

                                                Dead Infected χ( )( )

                                                11 1 1δ ηminus minus minus

                                                βα

                                                ( )( )1 1 1χδ ηminus minus minus

                                                0R β χα δ η δ η

                                                = ++ minus sdot

                                                Life table of infection

                                                001 06 0904 05 09 05 09

                                                R = + =+ minus sdot

                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                WSSV life cycle diagram3-host community

                                                Susceptible

                                                Susceptible

                                                Susceptible Infected

                                                Infected

                                                Infected Dead

                                                Dead

                                                Dead

                                                β31

                                                χ31

                                                χ11

                                                β11λ1

                                                λ2

                                                λ3

                                                micro1

                                                micro2

                                                micro3

                                                β12 β21 χ21

                                                α1 micro1

                                                α2 micro2

                                                α3 micro3

                                                χ12

                                                δ1 η1

                                                δ2 η2

                                                δ3 η3χ33

                                                β33

                                                χ13

                                                β13

                                                χ22

                                                β32χ32

                                                β22

                                                χ23β23

                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                ( ) ( )

                                                ( ) ( )( ) ( )

                                                ( ) ( )

                                                ( ) ( )( ) ( )

                                                3

                                                1 11

                                                3

                                                1 1 11

                                                1

                                                3

                                                2 21

                                                3

                                                2 2 21

                                                2

                                                3

                                                1 1 0 0 0 0 0 0 0 0

                                                1 1 1 1 0 0 0 0 0 0 0

                                                0 1 1 1 0 0 0 0 0 0

                                                0 0 0 1 1 0 0 0 0 0

                                                0 0 0 1 1 1 1 0 0 0 0

                                                0 0 0 0 1 1 1 0 0 0

                                                0 0 0 0 0 0 1

                                                i i

                                                i i

                                                i i

                                                i i

                                                I Di i

                                                i

                                                I Di i

                                                i

                                                I Di i

                                                i

                                                I Di i

                                                i

                                                β χ

                                                β χ α

                                                α δ η

                                                β χ

                                                β χ α

                                                α δ η

                                                β

                                                =

                                                =

                                                =

                                                =

                                                minus sdot minus

                                                minus minus sdot minus minus

                                                minus minus sdot minus

                                                minus sdot minus

                                                minus minus sdot minus minus

                                                minus minus sdot minus

                                                minus

                                                prod

                                                prod

                                                prod

                                                prod

                                                ( ) ( )

                                                ( ) ( )( ) ( )

                                                1

                                                1

                                                1

                                                2

                                                2

                                                2

                                                3

                                                33

                                                331

                                                3

                                                3 3 31

                                                3

                                                1 0 0

                                                0 0 0 0 0 0 1 1 1 1 0

                                                0 0 0 0 0 0 0 1 1 1

                                                i i

                                                i i

                                                I Di i

                                                i

                                                I Di i

                                                i

                                                SIDSIDSIDχ

                                                β χ α

                                                α δ η

                                                =

                                                =

                                                sdot

                                                sdot minus

                                                minus minus sdot minus minus minus minus sdot minus

                                                prod

                                                prod

                                                WSSV 3-host community matrix model

                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                • Slide Number 1
                                                • Slide Number 2
                                                • Slide Number 3
                                                • Slide Number 4
                                                • Slide Number 5
                                                • Slide Number 6
                                                • Slide Number 7
                                                • Slide Number 8
                                                • Slide Number 9
                                                • Emergence of White spot syndrome virus
                                                • Slide Number 11
                                                • Slide Number 12
                                                • Slide Number 13
                                                • Hosts of WSSV
                                                • WSSV Litopenaeus vannamei
                                                • Slide Number 16
                                                • Slide Number 17
                                                • Slide Number 18
                                                • Slide Number 19
                                                • Slide Number 20
                                                • Slide Number 21
                                                • Slide Number 22
                                                • Slide Number 23
                                                • Slide Number 24
                                                • Slide Number 25
                                                • Slide Number 26
                                                • Slide Number 27
                                                • Slide Number 28
                                                • Slide Number 29
                                                • Slide Number 30
                                                • Slide Number 31
                                                • Slide Number 32
                                                • Slide Number 33
                                                • Slide Number 34
                                                • Slide Number 35
                                                • Slide Number 36
                                                • Slide Number 37
                                                • Slide Number 38

                                                  2(1 )βminus

                                                  1 βminusβ 1 βminusβ

                                                  21 (1 )βminus minus

                                                  3 Ways to become infected1 amp not 2 βlowast(1minusβ)ornot 1 amp 2 (1minusβ)lowastβor1 amp 2 βlowastβ

                                                  Only 1 way to remain uninfected1 amp 2 (1- β)lowast(1minusβ)

                                                  βlowast(1minusβ) + (1minusβ)lowastβ + βlowastβ

                                                  1- (1 )(1 ) t

                                                  t t tIS S S β+

                                                  = sdot minus minusReed-Frost

                                                  Black-Singer

                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                  Epidemic models ndash parameter estimates

                                                  ( ) ( )( )( ) ( )( )

                                                  ( ) ( )( )

                                                  1

                                                  1

                                                  1

                                                  1 1 1

                                                  1 1 1

                                                  1 1 1

                                                  t t

                                                  t t

                                                  I Dt t t

                                                  I Dt t t t

                                                  t t t t

                                                  S S S

                                                  I I S I

                                                  D D I D

                                                  β χ

                                                  β χ α

                                                  α η δ

                                                  +

                                                  +

                                                  +

                                                  = minus sdot minus minus minus

                                                  = + sdot minus minus minus minus sdot

                                                  = + sdot minus minus minus sdot minus sdot

                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                  If t = 1 and I0 = 1

                                                  1

                                                  0

                                                  1 ss

                                                  β

                                                  = minus

                                                  The proportion infected after exposure to one infected shrimpβ

                                                  Parameter estimates ndash transmission (β χ)

                                                  1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                                                  Solve for β

                                                  1

                                                  1

                                                  0

                                                  0

                                                  ln(1) 1 exp

                                                  tSS

                                                  = minus

                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                  Parameter estimates ndash transmission (β χ)

                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                  Parameter estimates ndash transmission (β χ)

                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                  Parameter estimates ndash transmission (β χ)

                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                  bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                                                  Parameter estimates ndash transmission (β χ) and virulence (α)

                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                  1t t tI I I α+ = minus sdot

                                                  0

                                                  10

                                                  20

                                                  30

                                                  40

                                                  0 4 8 12 16Time (h)

                                                  Surv

                                                  ival

                                                  Parameter estimates ndash virulence (α)

                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                  decomposition

                                                  transmission decreases by 48 per day

                                                  y-intercept = 0499

                                                  0 4 8 12Days after death

                                                  00

                                                  02

                                                  04

                                                  06

                                                  08

                                                  10

                                                  Tran

                                                  smis

                                                  sion

                                                  χ

                                                  Parameter estimates ndash decay of transmission (δ)

                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                  Parameter estimates η consumption of shrimp

                                                  24 shrimp12 shrimp

                                                  6 shrimp1 shrimp

                                                  FedFasted

                                                  decrease per hr (day) decrease per hr (day)

                                                  0 10 20 30Time (hr)

                                                  00

                                                  02

                                                  04

                                                  06

                                                  08

                                                  10

                                                  Prop

                                                  ortio

                                                  n B

                                                  iom

                                                  ass

                                                  0 10 20 300 10 20 300 10 20 300 10 20 30

                                                  10

                                                  0 10 20 30Time (hr)

                                                  00

                                                  02

                                                  04

                                                  06

                                                  08

                                                  Prop

                                                  ortio

                                                  n B

                                                  iom

                                                  ass

                                                  0 10 20 300 10 20 300 10 20 300 10 20 30

                                                  17 (99)30 (100)34 (100)33 (100)

                                                  6 (79)11 (94)11 (94)12 (96)

                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                  Parameter estimates consumption (η) amp decomposition (δ) combined

                                                  048 + 100 - 10 048= 100

                                                  048 + 79 - 7948= 089

                                                  An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                  State Duration Transmission Product

                                                  Live Infected β

                                                  Dead Infected χ( )( )

                                                  11 1 1δ ηminus minus minus

                                                  βα

                                                  ( )( )1 1 1χδ ηminus minus minus

                                                  0R β χα δ η δ η

                                                  = ++ minus sdot

                                                  Life table of infection

                                                  001 06 0904 05 09 05 09

                                                  R = + =+ minus sdot

                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                  WSSV life cycle diagram3-host community

                                                  Susceptible

                                                  Susceptible

                                                  Susceptible Infected

                                                  Infected

                                                  Infected Dead

                                                  Dead

                                                  Dead

                                                  β31

                                                  χ31

                                                  χ11

                                                  β11λ1

                                                  λ2

                                                  λ3

                                                  micro1

                                                  micro2

                                                  micro3

                                                  β12 β21 χ21

                                                  α1 micro1

                                                  α2 micro2

                                                  α3 micro3

                                                  χ12

                                                  δ1 η1

                                                  δ2 η2

                                                  δ3 η3χ33

                                                  β33

                                                  χ13

                                                  β13

                                                  χ22

                                                  β32χ32

                                                  β22

                                                  χ23β23

                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                  ( ) ( )

                                                  ( ) ( )( ) ( )

                                                  ( ) ( )

                                                  ( ) ( )( ) ( )

                                                  3

                                                  1 11

                                                  3

                                                  1 1 11

                                                  1

                                                  3

                                                  2 21

                                                  3

                                                  2 2 21

                                                  2

                                                  3

                                                  1 1 0 0 0 0 0 0 0 0

                                                  1 1 1 1 0 0 0 0 0 0 0

                                                  0 1 1 1 0 0 0 0 0 0

                                                  0 0 0 1 1 0 0 0 0 0

                                                  0 0 0 1 1 1 1 0 0 0 0

                                                  0 0 0 0 1 1 1 0 0 0

                                                  0 0 0 0 0 0 1

                                                  i i

                                                  i i

                                                  i i

                                                  i i

                                                  I Di i

                                                  i

                                                  I Di i

                                                  i

                                                  I Di i

                                                  i

                                                  I Di i

                                                  i

                                                  β χ

                                                  β χ α

                                                  α δ η

                                                  β χ

                                                  β χ α

                                                  α δ η

                                                  β

                                                  =

                                                  =

                                                  =

                                                  =

                                                  minus sdot minus

                                                  minus minus sdot minus minus

                                                  minus minus sdot minus

                                                  minus sdot minus

                                                  minus minus sdot minus minus

                                                  minus minus sdot minus

                                                  minus

                                                  prod

                                                  prod

                                                  prod

                                                  prod

                                                  ( ) ( )

                                                  ( ) ( )( ) ( )

                                                  1

                                                  1

                                                  1

                                                  2

                                                  2

                                                  2

                                                  3

                                                  33

                                                  331

                                                  3

                                                  3 3 31

                                                  3

                                                  1 0 0

                                                  0 0 0 0 0 0 1 1 1 1 0

                                                  0 0 0 0 0 0 0 1 1 1

                                                  i i

                                                  i i

                                                  I Di i

                                                  i

                                                  I Di i

                                                  i

                                                  SIDSIDSIDχ

                                                  β χ α

                                                  α δ η

                                                  =

                                                  =

                                                  sdot

                                                  sdot minus

                                                  minus minus sdot minus minus minus minus sdot minus

                                                  prod

                                                  prod

                                                  WSSV 3-host community matrix model

                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                  • Slide Number 1
                                                  • Slide Number 2
                                                  • Slide Number 3
                                                  • Slide Number 4
                                                  • Slide Number 5
                                                  • Slide Number 6
                                                  • Slide Number 7
                                                  • Slide Number 8
                                                  • Slide Number 9
                                                  • Emergence of White spot syndrome virus
                                                  • Slide Number 11
                                                  • Slide Number 12
                                                  • Slide Number 13
                                                  • Hosts of WSSV
                                                  • WSSV Litopenaeus vannamei
                                                  • Slide Number 16
                                                  • Slide Number 17
                                                  • Slide Number 18
                                                  • Slide Number 19
                                                  • Slide Number 20
                                                  • Slide Number 21
                                                  • Slide Number 22
                                                  • Slide Number 23
                                                  • Slide Number 24
                                                  • Slide Number 25
                                                  • Slide Number 26
                                                  • Slide Number 27
                                                  • Slide Number 28
                                                  • Slide Number 29
                                                  • Slide Number 30
                                                  • Slide Number 31
                                                  • Slide Number 32
                                                  • Slide Number 33
                                                  • Slide Number 34
                                                  • Slide Number 35
                                                  • Slide Number 36
                                                  • Slide Number 37
                                                  • Slide Number 38

                                                    Epidemic models ndash parameter estimates

                                                    ( ) ( )( )( ) ( )( )

                                                    ( ) ( )( )

                                                    1

                                                    1

                                                    1

                                                    1 1 1

                                                    1 1 1

                                                    1 1 1

                                                    t t

                                                    t t

                                                    I Dt t t

                                                    I Dt t t t

                                                    t t t t

                                                    S S S

                                                    I I S I

                                                    D D I D

                                                    β χ

                                                    β χ α

                                                    α η δ

                                                    +

                                                    +

                                                    +

                                                    = minus sdot minus minus minus

                                                    = + sdot minus minus minus minus sdot

                                                    = + sdot minus minus minus sdot minus sdot

                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                    If t = 1 and I0 = 1

                                                    1

                                                    0

                                                    1 ss

                                                    β

                                                    = minus

                                                    The proportion infected after exposure to one infected shrimpβ

                                                    Parameter estimates ndash transmission (β χ)

                                                    1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                                                    Solve for β

                                                    1

                                                    1

                                                    0

                                                    0

                                                    ln(1) 1 exp

                                                    tSS

                                                    = minus

                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                    Parameter estimates ndash transmission (β χ)

                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                    Parameter estimates ndash transmission (β χ)

                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                    Parameter estimates ndash transmission (β χ)

                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                    bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                                                    Parameter estimates ndash transmission (β χ) and virulence (α)

                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                    1t t tI I I α+ = minus sdot

                                                    0

                                                    10

                                                    20

                                                    30

                                                    40

                                                    0 4 8 12 16Time (h)

                                                    Surv

                                                    ival

                                                    Parameter estimates ndash virulence (α)

                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                    decomposition

                                                    transmission decreases by 48 per day

                                                    y-intercept = 0499

                                                    0 4 8 12Days after death

                                                    00

                                                    02

                                                    04

                                                    06

                                                    08

                                                    10

                                                    Tran

                                                    smis

                                                    sion

                                                    χ

                                                    Parameter estimates ndash decay of transmission (δ)

                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                    Parameter estimates η consumption of shrimp

                                                    24 shrimp12 shrimp

                                                    6 shrimp1 shrimp

                                                    FedFasted

                                                    decrease per hr (day) decrease per hr (day)

                                                    0 10 20 30Time (hr)

                                                    00

                                                    02

                                                    04

                                                    06

                                                    08

                                                    10

                                                    Prop

                                                    ortio

                                                    n B

                                                    iom

                                                    ass

                                                    0 10 20 300 10 20 300 10 20 300 10 20 30

                                                    10

                                                    0 10 20 30Time (hr)

                                                    00

                                                    02

                                                    04

                                                    06

                                                    08

                                                    Prop

                                                    ortio

                                                    n B

                                                    iom

                                                    ass

                                                    0 10 20 300 10 20 300 10 20 300 10 20 30

                                                    17 (99)30 (100)34 (100)33 (100)

                                                    6 (79)11 (94)11 (94)12 (96)

                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                    Parameter estimates consumption (η) amp decomposition (δ) combined

                                                    048 + 100 - 10 048= 100

                                                    048 + 79 - 7948= 089

                                                    An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                    State Duration Transmission Product

                                                    Live Infected β

                                                    Dead Infected χ( )( )

                                                    11 1 1δ ηminus minus minus

                                                    βα

                                                    ( )( )1 1 1χδ ηminus minus minus

                                                    0R β χα δ η δ η

                                                    = ++ minus sdot

                                                    Life table of infection

                                                    001 06 0904 05 09 05 09

                                                    R = + =+ minus sdot

                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                    WSSV life cycle diagram3-host community

                                                    Susceptible

                                                    Susceptible

                                                    Susceptible Infected

                                                    Infected

                                                    Infected Dead

                                                    Dead

                                                    Dead

                                                    β31

                                                    χ31

                                                    χ11

                                                    β11λ1

                                                    λ2

                                                    λ3

                                                    micro1

                                                    micro2

                                                    micro3

                                                    β12 β21 χ21

                                                    α1 micro1

                                                    α2 micro2

                                                    α3 micro3

                                                    χ12

                                                    δ1 η1

                                                    δ2 η2

                                                    δ3 η3χ33

                                                    β33

                                                    χ13

                                                    β13

                                                    χ22

                                                    β32χ32

                                                    β22

                                                    χ23β23

                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                    ( ) ( )

                                                    ( ) ( )( ) ( )

                                                    ( ) ( )

                                                    ( ) ( )( ) ( )

                                                    3

                                                    1 11

                                                    3

                                                    1 1 11

                                                    1

                                                    3

                                                    2 21

                                                    3

                                                    2 2 21

                                                    2

                                                    3

                                                    1 1 0 0 0 0 0 0 0 0

                                                    1 1 1 1 0 0 0 0 0 0 0

                                                    0 1 1 1 0 0 0 0 0 0

                                                    0 0 0 1 1 0 0 0 0 0

                                                    0 0 0 1 1 1 1 0 0 0 0

                                                    0 0 0 0 1 1 1 0 0 0

                                                    0 0 0 0 0 0 1

                                                    i i

                                                    i i

                                                    i i

                                                    i i

                                                    I Di i

                                                    i

                                                    I Di i

                                                    i

                                                    I Di i

                                                    i

                                                    I Di i

                                                    i

                                                    β χ

                                                    β χ α

                                                    α δ η

                                                    β χ

                                                    β χ α

                                                    α δ η

                                                    β

                                                    =

                                                    =

                                                    =

                                                    =

                                                    minus sdot minus

                                                    minus minus sdot minus minus

                                                    minus minus sdot minus

                                                    minus sdot minus

                                                    minus minus sdot minus minus

                                                    minus minus sdot minus

                                                    minus

                                                    prod

                                                    prod

                                                    prod

                                                    prod

                                                    ( ) ( )

                                                    ( ) ( )( ) ( )

                                                    1

                                                    1

                                                    1

                                                    2

                                                    2

                                                    2

                                                    3

                                                    33

                                                    331

                                                    3

                                                    3 3 31

                                                    3

                                                    1 0 0

                                                    0 0 0 0 0 0 1 1 1 1 0

                                                    0 0 0 0 0 0 0 1 1 1

                                                    i i

                                                    i i

                                                    I Di i

                                                    i

                                                    I Di i

                                                    i

                                                    SIDSIDSIDχ

                                                    β χ α

                                                    α δ η

                                                    =

                                                    =

                                                    sdot

                                                    sdot minus

                                                    minus minus sdot minus minus minus minus sdot minus

                                                    prod

                                                    prod

                                                    WSSV 3-host community matrix model

                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                    • Slide Number 1
                                                    • Slide Number 2
                                                    • Slide Number 3
                                                    • Slide Number 4
                                                    • Slide Number 5
                                                    • Slide Number 6
                                                    • Slide Number 7
                                                    • Slide Number 8
                                                    • Slide Number 9
                                                    • Emergence of White spot syndrome virus
                                                    • Slide Number 11
                                                    • Slide Number 12
                                                    • Slide Number 13
                                                    • Hosts of WSSV
                                                    • WSSV Litopenaeus vannamei
                                                    • Slide Number 16
                                                    • Slide Number 17
                                                    • Slide Number 18
                                                    • Slide Number 19
                                                    • Slide Number 20
                                                    • Slide Number 21
                                                    • Slide Number 22
                                                    • Slide Number 23
                                                    • Slide Number 24
                                                    • Slide Number 25
                                                    • Slide Number 26
                                                    • Slide Number 27
                                                    • Slide Number 28
                                                    • Slide Number 29
                                                    • Slide Number 30
                                                    • Slide Number 31
                                                    • Slide Number 32
                                                    • Slide Number 33
                                                    • Slide Number 34
                                                    • Slide Number 35
                                                    • Slide Number 36
                                                    • Slide Number 37
                                                    • Slide Number 38

                                                      If t = 1 and I0 = 1

                                                      1

                                                      0

                                                      1 ss

                                                      β

                                                      = minus

                                                      The proportion infected after exposure to one infected shrimpβ

                                                      Parameter estimates ndash transmission (β χ)

                                                      1 (1 (1 ) )tIt t tS S S β+ = minus sdot minus minus

                                                      Solve for β

                                                      1

                                                      1

                                                      0

                                                      0

                                                      ln(1) 1 exp

                                                      tSS

                                                      = minus

                                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                      Parameter estimates ndash transmission (β χ)

                                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                      Parameter estimates ndash transmission (β χ)

                                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                      Parameter estimates ndash transmission (β χ)

                                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                      bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                                                      Parameter estimates ndash transmission (β χ) and virulence (α)

                                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                      1t t tI I I α+ = minus sdot

                                                      0

                                                      10

                                                      20

                                                      30

                                                      40

                                                      0 4 8 12 16Time (h)

                                                      Surv

                                                      ival

                                                      Parameter estimates ndash virulence (α)

                                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                      decomposition

                                                      transmission decreases by 48 per day

                                                      y-intercept = 0499

                                                      0 4 8 12Days after death

                                                      00

                                                      02

                                                      04

                                                      06

                                                      08

                                                      10

                                                      Tran

                                                      smis

                                                      sion

                                                      χ

                                                      Parameter estimates ndash decay of transmission (δ)

                                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                      Parameter estimates η consumption of shrimp

                                                      24 shrimp12 shrimp

                                                      6 shrimp1 shrimp

                                                      FedFasted

                                                      decrease per hr (day) decrease per hr (day)

                                                      0 10 20 30Time (hr)

                                                      00

                                                      02

                                                      04

                                                      06

                                                      08

                                                      10

                                                      Prop

                                                      ortio

                                                      n B

                                                      iom

                                                      ass

                                                      0 10 20 300 10 20 300 10 20 300 10 20 30

                                                      10

                                                      0 10 20 30Time (hr)

                                                      00

                                                      02

                                                      04

                                                      06

                                                      08

                                                      Prop

                                                      ortio

                                                      n B

                                                      iom

                                                      ass

                                                      0 10 20 300 10 20 300 10 20 300 10 20 30

                                                      17 (99)30 (100)34 (100)33 (100)

                                                      6 (79)11 (94)11 (94)12 (96)

                                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                      Parameter estimates consumption (η) amp decomposition (δ) combined

                                                      048 + 100 - 10 048= 100

                                                      048 + 79 - 7948= 089

                                                      An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                      State Duration Transmission Product

                                                      Live Infected β

                                                      Dead Infected χ( )( )

                                                      11 1 1δ ηminus minus minus

                                                      βα

                                                      ( )( )1 1 1χδ ηminus minus minus

                                                      0R β χα δ η δ η

                                                      = ++ minus sdot

                                                      Life table of infection

                                                      001 06 0904 05 09 05 09

                                                      R = + =+ minus sdot

                                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                      WSSV life cycle diagram3-host community

                                                      Susceptible

                                                      Susceptible

                                                      Susceptible Infected

                                                      Infected

                                                      Infected Dead

                                                      Dead

                                                      Dead

                                                      β31

                                                      χ31

                                                      χ11

                                                      β11λ1

                                                      λ2

                                                      λ3

                                                      micro1

                                                      micro2

                                                      micro3

                                                      β12 β21 χ21

                                                      α1 micro1

                                                      α2 micro2

                                                      α3 micro3

                                                      χ12

                                                      δ1 η1

                                                      δ2 η2

                                                      δ3 η3χ33

                                                      β33

                                                      χ13

                                                      β13

                                                      χ22

                                                      β32χ32

                                                      β22

                                                      χ23β23

                                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                      ( ) ( )

                                                      ( ) ( )( ) ( )

                                                      ( ) ( )

                                                      ( ) ( )( ) ( )

                                                      3

                                                      1 11

                                                      3

                                                      1 1 11

                                                      1

                                                      3

                                                      2 21

                                                      3

                                                      2 2 21

                                                      2

                                                      3

                                                      1 1 0 0 0 0 0 0 0 0

                                                      1 1 1 1 0 0 0 0 0 0 0

                                                      0 1 1 1 0 0 0 0 0 0

                                                      0 0 0 1 1 0 0 0 0 0

                                                      0 0 0 1 1 1 1 0 0 0 0

                                                      0 0 0 0 1 1 1 0 0 0

                                                      0 0 0 0 0 0 1

                                                      i i

                                                      i i

                                                      i i

                                                      i i

                                                      I Di i

                                                      i

                                                      I Di i

                                                      i

                                                      I Di i

                                                      i

                                                      I Di i

                                                      i

                                                      β χ

                                                      β χ α

                                                      α δ η

                                                      β χ

                                                      β χ α

                                                      α δ η

                                                      β

                                                      =

                                                      =

                                                      =

                                                      =

                                                      minus sdot minus

                                                      minus minus sdot minus minus

                                                      minus minus sdot minus

                                                      minus sdot minus

                                                      minus minus sdot minus minus

                                                      minus minus sdot minus

                                                      minus

                                                      prod

                                                      prod

                                                      prod

                                                      prod

                                                      ( ) ( )

                                                      ( ) ( )( ) ( )

                                                      1

                                                      1

                                                      1

                                                      2

                                                      2

                                                      2

                                                      3

                                                      33

                                                      331

                                                      3

                                                      3 3 31

                                                      3

                                                      1 0 0

                                                      0 0 0 0 0 0 1 1 1 1 0

                                                      0 0 0 0 0 0 0 1 1 1

                                                      i i

                                                      i i

                                                      I Di i

                                                      i

                                                      I Di i

                                                      i

                                                      SIDSIDSIDχ

                                                      β χ α

                                                      α δ η

                                                      =

                                                      =

                                                      sdot

                                                      sdot minus

                                                      minus minus sdot minus minus minus minus sdot minus

                                                      prod

                                                      prod

                                                      WSSV 3-host community matrix model

                                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                      • Slide Number 1
                                                      • Slide Number 2
                                                      • Slide Number 3
                                                      • Slide Number 4
                                                      • Slide Number 5
                                                      • Slide Number 6
                                                      • Slide Number 7
                                                      • Slide Number 8
                                                      • Slide Number 9
                                                      • Emergence of White spot syndrome virus
                                                      • Slide Number 11
                                                      • Slide Number 12
                                                      • Slide Number 13
                                                      • Hosts of WSSV
                                                      • WSSV Litopenaeus vannamei
                                                      • Slide Number 16
                                                      • Slide Number 17
                                                      • Slide Number 18
                                                      • Slide Number 19
                                                      • Slide Number 20
                                                      • Slide Number 21
                                                      • Slide Number 22
                                                      • Slide Number 23
                                                      • Slide Number 24
                                                      • Slide Number 25
                                                      • Slide Number 26
                                                      • Slide Number 27
                                                      • Slide Number 28
                                                      • Slide Number 29
                                                      • Slide Number 30
                                                      • Slide Number 31
                                                      • Slide Number 32
                                                      • Slide Number 33
                                                      • Slide Number 34
                                                      • Slide Number 35
                                                      • Slide Number 36
                                                      • Slide Number 37
                                                      • Slide Number 38

                                                        Parameter estimates ndash transmission (β χ)

                                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                        Parameter estimates ndash transmission (β χ)

                                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                        Parameter estimates ndash transmission (β χ)

                                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                        bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                                                        Parameter estimates ndash transmission (β χ) and virulence (α)

                                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                        1t t tI I I α+ = minus sdot

                                                        0

                                                        10

                                                        20

                                                        30

                                                        40

                                                        0 4 8 12 16Time (h)

                                                        Surv

                                                        ival

                                                        Parameter estimates ndash virulence (α)

                                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                        decomposition

                                                        transmission decreases by 48 per day

                                                        y-intercept = 0499

                                                        0 4 8 12Days after death

                                                        00

                                                        02

                                                        04

                                                        06

                                                        08

                                                        10

                                                        Tran

                                                        smis

                                                        sion

                                                        χ

                                                        Parameter estimates ndash decay of transmission (δ)

                                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                        Parameter estimates η consumption of shrimp

                                                        24 shrimp12 shrimp

                                                        6 shrimp1 shrimp

                                                        FedFasted

                                                        decrease per hr (day) decrease per hr (day)

                                                        0 10 20 30Time (hr)

                                                        00

                                                        02

                                                        04

                                                        06

                                                        08

                                                        10

                                                        Prop

                                                        ortio

                                                        n B

                                                        iom

                                                        ass

                                                        0 10 20 300 10 20 300 10 20 300 10 20 30

                                                        10

                                                        0 10 20 30Time (hr)

                                                        00

                                                        02

                                                        04

                                                        06

                                                        08

                                                        Prop

                                                        ortio

                                                        n B

                                                        iom

                                                        ass

                                                        0 10 20 300 10 20 300 10 20 300 10 20 30

                                                        17 (99)30 (100)34 (100)33 (100)

                                                        6 (79)11 (94)11 (94)12 (96)

                                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                        Parameter estimates consumption (η) amp decomposition (δ) combined

                                                        048 + 100 - 10 048= 100

                                                        048 + 79 - 7948= 089

                                                        An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                        State Duration Transmission Product

                                                        Live Infected β

                                                        Dead Infected χ( )( )

                                                        11 1 1δ ηminus minus minus

                                                        βα

                                                        ( )( )1 1 1χδ ηminus minus minus

                                                        0R β χα δ η δ η

                                                        = ++ minus sdot

                                                        Life table of infection

                                                        001 06 0904 05 09 05 09

                                                        R = + =+ minus sdot

                                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                        WSSV life cycle diagram3-host community

                                                        Susceptible

                                                        Susceptible

                                                        Susceptible Infected

                                                        Infected

                                                        Infected Dead

                                                        Dead

                                                        Dead

                                                        β31

                                                        χ31

                                                        χ11

                                                        β11λ1

                                                        λ2

                                                        λ3

                                                        micro1

                                                        micro2

                                                        micro3

                                                        β12 β21 χ21

                                                        α1 micro1

                                                        α2 micro2

                                                        α3 micro3

                                                        χ12

                                                        δ1 η1

                                                        δ2 η2

                                                        δ3 η3χ33

                                                        β33

                                                        χ13

                                                        β13

                                                        χ22

                                                        β32χ32

                                                        β22

                                                        χ23β23

                                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                        ( ) ( )

                                                        ( ) ( )( ) ( )

                                                        ( ) ( )

                                                        ( ) ( )( ) ( )

                                                        3

                                                        1 11

                                                        3

                                                        1 1 11

                                                        1

                                                        3

                                                        2 21

                                                        3

                                                        2 2 21

                                                        2

                                                        3

                                                        1 1 0 0 0 0 0 0 0 0

                                                        1 1 1 1 0 0 0 0 0 0 0

                                                        0 1 1 1 0 0 0 0 0 0

                                                        0 0 0 1 1 0 0 0 0 0

                                                        0 0 0 1 1 1 1 0 0 0 0

                                                        0 0 0 0 1 1 1 0 0 0

                                                        0 0 0 0 0 0 1

                                                        i i

                                                        i i

                                                        i i

                                                        i i

                                                        I Di i

                                                        i

                                                        I Di i

                                                        i

                                                        I Di i

                                                        i

                                                        I Di i

                                                        i

                                                        β χ

                                                        β χ α

                                                        α δ η

                                                        β χ

                                                        β χ α

                                                        α δ η

                                                        β

                                                        =

                                                        =

                                                        =

                                                        =

                                                        minus sdot minus

                                                        minus minus sdot minus minus

                                                        minus minus sdot minus

                                                        minus sdot minus

                                                        minus minus sdot minus minus

                                                        minus minus sdot minus

                                                        minus

                                                        prod

                                                        prod

                                                        prod

                                                        prod

                                                        ( ) ( )

                                                        ( ) ( )( ) ( )

                                                        1

                                                        1

                                                        1

                                                        2

                                                        2

                                                        2

                                                        3

                                                        33

                                                        331

                                                        3

                                                        3 3 31

                                                        3

                                                        1 0 0

                                                        0 0 0 0 0 0 1 1 1 1 0

                                                        0 0 0 0 0 0 0 1 1 1

                                                        i i

                                                        i i

                                                        I Di i

                                                        i

                                                        I Di i

                                                        i

                                                        SIDSIDSIDχ

                                                        β χ α

                                                        α δ η

                                                        =

                                                        =

                                                        sdot

                                                        sdot minus

                                                        minus minus sdot minus minus minus minus sdot minus

                                                        prod

                                                        prod

                                                        WSSV 3-host community matrix model

                                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                        • Slide Number 1
                                                        • Slide Number 2
                                                        • Slide Number 3
                                                        • Slide Number 4
                                                        • Slide Number 5
                                                        • Slide Number 6
                                                        • Slide Number 7
                                                        • Slide Number 8
                                                        • Slide Number 9
                                                        • Emergence of White spot syndrome virus
                                                        • Slide Number 11
                                                        • Slide Number 12
                                                        • Slide Number 13
                                                        • Hosts of WSSV
                                                        • WSSV Litopenaeus vannamei
                                                        • Slide Number 16
                                                        • Slide Number 17
                                                        • Slide Number 18
                                                        • Slide Number 19
                                                        • Slide Number 20
                                                        • Slide Number 21
                                                        • Slide Number 22
                                                        • Slide Number 23
                                                        • Slide Number 24
                                                        • Slide Number 25
                                                        • Slide Number 26
                                                        • Slide Number 27
                                                        • Slide Number 28
                                                        • Slide Number 29
                                                        • Slide Number 30
                                                        • Slide Number 31
                                                        • Slide Number 32
                                                        • Slide Number 33
                                                        • Slide Number 34
                                                        • Slide Number 35
                                                        • Slide Number 36
                                                        • Slide Number 37
                                                        • Slide Number 38

                                                          Parameter estimates ndash transmission (β χ)

                                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                          Parameter estimates ndash transmission (β χ)

                                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                          bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                                                          Parameter estimates ndash transmission (β χ) and virulence (α)

                                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                          1t t tI I I α+ = minus sdot

                                                          0

                                                          10

                                                          20

                                                          30

                                                          40

                                                          0 4 8 12 16Time (h)

                                                          Surv

                                                          ival

                                                          Parameter estimates ndash virulence (α)

                                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                          decomposition

                                                          transmission decreases by 48 per day

                                                          y-intercept = 0499

                                                          0 4 8 12Days after death

                                                          00

                                                          02

                                                          04

                                                          06

                                                          08

                                                          10

                                                          Tran

                                                          smis

                                                          sion

                                                          χ

                                                          Parameter estimates ndash decay of transmission (δ)

                                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                          Parameter estimates η consumption of shrimp

                                                          24 shrimp12 shrimp

                                                          6 shrimp1 shrimp

                                                          FedFasted

                                                          decrease per hr (day) decrease per hr (day)

                                                          0 10 20 30Time (hr)

                                                          00

                                                          02

                                                          04

                                                          06

                                                          08

                                                          10

                                                          Prop

                                                          ortio

                                                          n B

                                                          iom

                                                          ass

                                                          0 10 20 300 10 20 300 10 20 300 10 20 30

                                                          10

                                                          0 10 20 30Time (hr)

                                                          00

                                                          02

                                                          04

                                                          06

                                                          08

                                                          Prop

                                                          ortio

                                                          n B

                                                          iom

                                                          ass

                                                          0 10 20 300 10 20 300 10 20 300 10 20 30

                                                          17 (99)30 (100)34 (100)33 (100)

                                                          6 (79)11 (94)11 (94)12 (96)

                                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                          Parameter estimates consumption (η) amp decomposition (δ) combined

                                                          048 + 100 - 10 048= 100

                                                          048 + 79 - 7948= 089

                                                          An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                          State Duration Transmission Product

                                                          Live Infected β

                                                          Dead Infected χ( )( )

                                                          11 1 1δ ηminus minus minus

                                                          βα

                                                          ( )( )1 1 1χδ ηminus minus minus

                                                          0R β χα δ η δ η

                                                          = ++ minus sdot

                                                          Life table of infection

                                                          001 06 0904 05 09 05 09

                                                          R = + =+ minus sdot

                                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                          WSSV life cycle diagram3-host community

                                                          Susceptible

                                                          Susceptible

                                                          Susceptible Infected

                                                          Infected

                                                          Infected Dead

                                                          Dead

                                                          Dead

                                                          β31

                                                          χ31

                                                          χ11

                                                          β11λ1

                                                          λ2

                                                          λ3

                                                          micro1

                                                          micro2

                                                          micro3

                                                          β12 β21 χ21

                                                          α1 micro1

                                                          α2 micro2

                                                          α3 micro3

                                                          χ12

                                                          δ1 η1

                                                          δ2 η2

                                                          δ3 η3χ33

                                                          β33

                                                          χ13

                                                          β13

                                                          χ22

                                                          β32χ32

                                                          β22

                                                          χ23β23

                                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                          ( ) ( )

                                                          ( ) ( )( ) ( )

                                                          ( ) ( )

                                                          ( ) ( )( ) ( )

                                                          3

                                                          1 11

                                                          3

                                                          1 1 11

                                                          1

                                                          3

                                                          2 21

                                                          3

                                                          2 2 21

                                                          2

                                                          3

                                                          1 1 0 0 0 0 0 0 0 0

                                                          1 1 1 1 0 0 0 0 0 0 0

                                                          0 1 1 1 0 0 0 0 0 0

                                                          0 0 0 1 1 0 0 0 0 0

                                                          0 0 0 1 1 1 1 0 0 0 0

                                                          0 0 0 0 1 1 1 0 0 0

                                                          0 0 0 0 0 0 1

                                                          i i

                                                          i i

                                                          i i

                                                          i i

                                                          I Di i

                                                          i

                                                          I Di i

                                                          i

                                                          I Di i

                                                          i

                                                          I Di i

                                                          i

                                                          β χ

                                                          β χ α

                                                          α δ η

                                                          β χ

                                                          β χ α

                                                          α δ η

                                                          β

                                                          =

                                                          =

                                                          =

                                                          =

                                                          minus sdot minus

                                                          minus minus sdot minus minus

                                                          minus minus sdot minus

                                                          minus sdot minus

                                                          minus minus sdot minus minus

                                                          minus minus sdot minus

                                                          minus

                                                          prod

                                                          prod

                                                          prod

                                                          prod

                                                          ( ) ( )

                                                          ( ) ( )( ) ( )

                                                          1

                                                          1

                                                          1

                                                          2

                                                          2

                                                          2

                                                          3

                                                          33

                                                          331

                                                          3

                                                          3 3 31

                                                          3

                                                          1 0 0

                                                          0 0 0 0 0 0 1 1 1 1 0

                                                          0 0 0 0 0 0 0 1 1 1

                                                          i i

                                                          i i

                                                          I Di i

                                                          i

                                                          I Di i

                                                          i

                                                          SIDSIDSIDχ

                                                          β χ α

                                                          α δ η

                                                          =

                                                          =

                                                          sdot

                                                          sdot minus

                                                          minus minus sdot minus minus minus minus sdot minus

                                                          prod

                                                          prod

                                                          WSSV 3-host community matrix model

                                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                          • Slide Number 1
                                                          • Slide Number 2
                                                          • Slide Number 3
                                                          • Slide Number 4
                                                          • Slide Number 5
                                                          • Slide Number 6
                                                          • Slide Number 7
                                                          • Slide Number 8
                                                          • Slide Number 9
                                                          • Emergence of White spot syndrome virus
                                                          • Slide Number 11
                                                          • Slide Number 12
                                                          • Slide Number 13
                                                          • Hosts of WSSV
                                                          • WSSV Litopenaeus vannamei
                                                          • Slide Number 16
                                                          • Slide Number 17
                                                          • Slide Number 18
                                                          • Slide Number 19
                                                          • Slide Number 20
                                                          • Slide Number 21
                                                          • Slide Number 22
                                                          • Slide Number 23
                                                          • Slide Number 24
                                                          • Slide Number 25
                                                          • Slide Number 26
                                                          • Slide Number 27
                                                          • Slide Number 28
                                                          • Slide Number 29
                                                          • Slide Number 30
                                                          • Slide Number 31
                                                          • Slide Number 32
                                                          • Slide Number 33
                                                          • Slide Number 34
                                                          • Slide Number 35
                                                          • Slide Number 36
                                                          • Slide Number 37
                                                          • Slide Number 38

                                                            Parameter estimates ndash transmission (β χ)

                                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                            bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                                                            Parameter estimates ndash transmission (β χ) and virulence (α)

                                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                            1t t tI I I α+ = minus sdot

                                                            0

                                                            10

                                                            20

                                                            30

                                                            40

                                                            0 4 8 12 16Time (h)

                                                            Surv

                                                            ival

                                                            Parameter estimates ndash virulence (α)

                                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                            decomposition

                                                            transmission decreases by 48 per day

                                                            y-intercept = 0499

                                                            0 4 8 12Days after death

                                                            00

                                                            02

                                                            04

                                                            06

                                                            08

                                                            10

                                                            Tran

                                                            smis

                                                            sion

                                                            χ

                                                            Parameter estimates ndash decay of transmission (δ)

                                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                            Parameter estimates η consumption of shrimp

                                                            24 shrimp12 shrimp

                                                            6 shrimp1 shrimp

                                                            FedFasted

                                                            decrease per hr (day) decrease per hr (day)

                                                            0 10 20 30Time (hr)

                                                            00

                                                            02

                                                            04

                                                            06

                                                            08

                                                            10

                                                            Prop

                                                            ortio

                                                            n B

                                                            iom

                                                            ass

                                                            0 10 20 300 10 20 300 10 20 300 10 20 30

                                                            10

                                                            0 10 20 30Time (hr)

                                                            00

                                                            02

                                                            04

                                                            06

                                                            08

                                                            Prop

                                                            ortio

                                                            n B

                                                            iom

                                                            ass

                                                            0 10 20 300 10 20 300 10 20 300 10 20 30

                                                            17 (99)30 (100)34 (100)33 (100)

                                                            6 (79)11 (94)11 (94)12 (96)

                                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                            Parameter estimates consumption (η) amp decomposition (δ) combined

                                                            048 + 100 - 10 048= 100

                                                            048 + 79 - 7948= 089

                                                            An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                            State Duration Transmission Product

                                                            Live Infected β

                                                            Dead Infected χ( )( )

                                                            11 1 1δ ηminus minus minus

                                                            βα

                                                            ( )( )1 1 1χδ ηminus minus minus

                                                            0R β χα δ η δ η

                                                            = ++ minus sdot

                                                            Life table of infection

                                                            001 06 0904 05 09 05 09

                                                            R = + =+ minus sdot

                                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                            WSSV life cycle diagram3-host community

                                                            Susceptible

                                                            Susceptible

                                                            Susceptible Infected

                                                            Infected

                                                            Infected Dead

                                                            Dead

                                                            Dead

                                                            β31

                                                            χ31

                                                            χ11

                                                            β11λ1

                                                            λ2

                                                            λ3

                                                            micro1

                                                            micro2

                                                            micro3

                                                            β12 β21 χ21

                                                            α1 micro1

                                                            α2 micro2

                                                            α3 micro3

                                                            χ12

                                                            δ1 η1

                                                            δ2 η2

                                                            δ3 η3χ33

                                                            β33

                                                            χ13

                                                            β13

                                                            χ22

                                                            β32χ32

                                                            β22

                                                            χ23β23

                                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                            ( ) ( )

                                                            ( ) ( )( ) ( )

                                                            ( ) ( )

                                                            ( ) ( )( ) ( )

                                                            3

                                                            1 11

                                                            3

                                                            1 1 11

                                                            1

                                                            3

                                                            2 21

                                                            3

                                                            2 2 21

                                                            2

                                                            3

                                                            1 1 0 0 0 0 0 0 0 0

                                                            1 1 1 1 0 0 0 0 0 0 0

                                                            0 1 1 1 0 0 0 0 0 0

                                                            0 0 0 1 1 0 0 0 0 0

                                                            0 0 0 1 1 1 1 0 0 0 0

                                                            0 0 0 0 1 1 1 0 0 0

                                                            0 0 0 0 0 0 1

                                                            i i

                                                            i i

                                                            i i

                                                            i i

                                                            I Di i

                                                            i

                                                            I Di i

                                                            i

                                                            I Di i

                                                            i

                                                            I Di i

                                                            i

                                                            β χ

                                                            β χ α

                                                            α δ η

                                                            β χ

                                                            β χ α

                                                            α δ η

                                                            β

                                                            =

                                                            =

                                                            =

                                                            =

                                                            minus sdot minus

                                                            minus minus sdot minus minus

                                                            minus minus sdot minus

                                                            minus sdot minus

                                                            minus minus sdot minus minus

                                                            minus minus sdot minus

                                                            minus

                                                            prod

                                                            prod

                                                            prod

                                                            prod

                                                            ( ) ( )

                                                            ( ) ( )( ) ( )

                                                            1

                                                            1

                                                            1

                                                            2

                                                            2

                                                            2

                                                            3

                                                            33

                                                            331

                                                            3

                                                            3 3 31

                                                            3

                                                            1 0 0

                                                            0 0 0 0 0 0 1 1 1 1 0

                                                            0 0 0 0 0 0 0 1 1 1

                                                            i i

                                                            i i

                                                            I Di i

                                                            i

                                                            I Di i

                                                            i

                                                            SIDSIDSIDχ

                                                            β χ α

                                                            α δ η

                                                            =

                                                            =

                                                            sdot

                                                            sdot minus

                                                            minus minus sdot minus minus minus minus sdot minus

                                                            prod

                                                            prod

                                                            WSSV 3-host community matrix model

                                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                            • Slide Number 1
                                                            • Slide Number 2
                                                            • Slide Number 3
                                                            • Slide Number 4
                                                            • Slide Number 5
                                                            • Slide Number 6
                                                            • Slide Number 7
                                                            • Slide Number 8
                                                            • Slide Number 9
                                                            • Emergence of White spot syndrome virus
                                                            • Slide Number 11
                                                            • Slide Number 12
                                                            • Slide Number 13
                                                            • Hosts of WSSV
                                                            • WSSV Litopenaeus vannamei
                                                            • Slide Number 16
                                                            • Slide Number 17
                                                            • Slide Number 18
                                                            • Slide Number 19
                                                            • Slide Number 20
                                                            • Slide Number 21
                                                            • Slide Number 22
                                                            • Slide Number 23
                                                            • Slide Number 24
                                                            • Slide Number 25
                                                            • Slide Number 26
                                                            • Slide Number 27
                                                            • Slide Number 28
                                                            • Slide Number 29
                                                            • Slide Number 30
                                                            • Slide Number 31
                                                            • Slide Number 32
                                                            • Slide Number 33
                                                            • Slide Number 34
                                                            • Slide Number 35
                                                            • Slide Number 36
                                                            • Slide Number 37
                                                            • Slide Number 38

                                                              bull 1-L jarsbull 1 shrimp per jarbull 5d incubationbull Collect mortalities (α)bull Collect survivors

                                                              Parameter estimates ndash transmission (β χ) and virulence (α)

                                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                              1t t tI I I α+ = minus sdot

                                                              0

                                                              10

                                                              20

                                                              30

                                                              40

                                                              0 4 8 12 16Time (h)

                                                              Surv

                                                              ival

                                                              Parameter estimates ndash virulence (α)

                                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                              decomposition

                                                              transmission decreases by 48 per day

                                                              y-intercept = 0499

                                                              0 4 8 12Days after death

                                                              00

                                                              02

                                                              04

                                                              06

                                                              08

                                                              10

                                                              Tran

                                                              smis

                                                              sion

                                                              χ

                                                              Parameter estimates ndash decay of transmission (δ)

                                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                              Parameter estimates η consumption of shrimp

                                                              24 shrimp12 shrimp

                                                              6 shrimp1 shrimp

                                                              FedFasted

                                                              decrease per hr (day) decrease per hr (day)

                                                              0 10 20 30Time (hr)

                                                              00

                                                              02

                                                              04

                                                              06

                                                              08

                                                              10

                                                              Prop

                                                              ortio

                                                              n B

                                                              iom

                                                              ass

                                                              0 10 20 300 10 20 300 10 20 300 10 20 30

                                                              10

                                                              0 10 20 30Time (hr)

                                                              00

                                                              02

                                                              04

                                                              06

                                                              08

                                                              Prop

                                                              ortio

                                                              n B

                                                              iom

                                                              ass

                                                              0 10 20 300 10 20 300 10 20 300 10 20 30

                                                              17 (99)30 (100)34 (100)33 (100)

                                                              6 (79)11 (94)11 (94)12 (96)

                                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                              Parameter estimates consumption (η) amp decomposition (δ) combined

                                                              048 + 100 - 10 048= 100

                                                              048 + 79 - 7948= 089

                                                              An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                              State Duration Transmission Product

                                                              Live Infected β

                                                              Dead Infected χ( )( )

                                                              11 1 1δ ηminus minus minus

                                                              βα

                                                              ( )( )1 1 1χδ ηminus minus minus

                                                              0R β χα δ η δ η

                                                              = ++ minus sdot

                                                              Life table of infection

                                                              001 06 0904 05 09 05 09

                                                              R = + =+ minus sdot

                                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                              WSSV life cycle diagram3-host community

                                                              Susceptible

                                                              Susceptible

                                                              Susceptible Infected

                                                              Infected

                                                              Infected Dead

                                                              Dead

                                                              Dead

                                                              β31

                                                              χ31

                                                              χ11

                                                              β11λ1

                                                              λ2

                                                              λ3

                                                              micro1

                                                              micro2

                                                              micro3

                                                              β12 β21 χ21

                                                              α1 micro1

                                                              α2 micro2

                                                              α3 micro3

                                                              χ12

                                                              δ1 η1

                                                              δ2 η2

                                                              δ3 η3χ33

                                                              β33

                                                              χ13

                                                              β13

                                                              χ22

                                                              β32χ32

                                                              β22

                                                              χ23β23

                                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                              ( ) ( )

                                                              ( ) ( )( ) ( )

                                                              ( ) ( )

                                                              ( ) ( )( ) ( )

                                                              3

                                                              1 11

                                                              3

                                                              1 1 11

                                                              1

                                                              3

                                                              2 21

                                                              3

                                                              2 2 21

                                                              2

                                                              3

                                                              1 1 0 0 0 0 0 0 0 0

                                                              1 1 1 1 0 0 0 0 0 0 0

                                                              0 1 1 1 0 0 0 0 0 0

                                                              0 0 0 1 1 0 0 0 0 0

                                                              0 0 0 1 1 1 1 0 0 0 0

                                                              0 0 0 0 1 1 1 0 0 0

                                                              0 0 0 0 0 0 1

                                                              i i

                                                              i i

                                                              i i

                                                              i i

                                                              I Di i

                                                              i

                                                              I Di i

                                                              i

                                                              I Di i

                                                              i

                                                              I Di i

                                                              i

                                                              β χ

                                                              β χ α

                                                              α δ η

                                                              β χ

                                                              β χ α

                                                              α δ η

                                                              β

                                                              =

                                                              =

                                                              =

                                                              =

                                                              minus sdot minus

                                                              minus minus sdot minus minus

                                                              minus minus sdot minus

                                                              minus sdot minus

                                                              minus minus sdot minus minus

                                                              minus minus sdot minus

                                                              minus

                                                              prod

                                                              prod

                                                              prod

                                                              prod

                                                              ( ) ( )

                                                              ( ) ( )( ) ( )

                                                              1

                                                              1

                                                              1

                                                              2

                                                              2

                                                              2

                                                              3

                                                              33

                                                              331

                                                              3

                                                              3 3 31

                                                              3

                                                              1 0 0

                                                              0 0 0 0 0 0 1 1 1 1 0

                                                              0 0 0 0 0 0 0 1 1 1

                                                              i i

                                                              i i

                                                              I Di i

                                                              i

                                                              I Di i

                                                              i

                                                              SIDSIDSIDχ

                                                              β χ α

                                                              α δ η

                                                              =

                                                              =

                                                              sdot

                                                              sdot minus

                                                              minus minus sdot minus minus minus minus sdot minus

                                                              prod

                                                              prod

                                                              WSSV 3-host community matrix model

                                                              RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                              • Slide Number 1
                                                              • Slide Number 2
                                                              • Slide Number 3
                                                              • Slide Number 4
                                                              • Slide Number 5
                                                              • Slide Number 6
                                                              • Slide Number 7
                                                              • Slide Number 8
                                                              • Slide Number 9
                                                              • Emergence of White spot syndrome virus
                                                              • Slide Number 11
                                                              • Slide Number 12
                                                              • Slide Number 13
                                                              • Hosts of WSSV
                                                              • WSSV Litopenaeus vannamei
                                                              • Slide Number 16
                                                              • Slide Number 17
                                                              • Slide Number 18
                                                              • Slide Number 19
                                                              • Slide Number 20
                                                              • Slide Number 21
                                                              • Slide Number 22
                                                              • Slide Number 23
                                                              • Slide Number 24
                                                              • Slide Number 25
                                                              • Slide Number 26
                                                              • Slide Number 27
                                                              • Slide Number 28
                                                              • Slide Number 29
                                                              • Slide Number 30
                                                              • Slide Number 31
                                                              • Slide Number 32
                                                              • Slide Number 33
                                                              • Slide Number 34
                                                              • Slide Number 35
                                                              • Slide Number 36
                                                              • Slide Number 37
                                                              • Slide Number 38

                                                                1t t tI I I α+ = minus sdot

                                                                0

                                                                10

                                                                20

                                                                30

                                                                40

                                                                0 4 8 12 16Time (h)

                                                                Surv

                                                                ival

                                                                Parameter estimates ndash virulence (α)

                                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                decomposition

                                                                transmission decreases by 48 per day

                                                                y-intercept = 0499

                                                                0 4 8 12Days after death

                                                                00

                                                                02

                                                                04

                                                                06

                                                                08

                                                                10

                                                                Tran

                                                                smis

                                                                sion

                                                                χ

                                                                Parameter estimates ndash decay of transmission (δ)

                                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                Parameter estimates η consumption of shrimp

                                                                24 shrimp12 shrimp

                                                                6 shrimp1 shrimp

                                                                FedFasted

                                                                decrease per hr (day) decrease per hr (day)

                                                                0 10 20 30Time (hr)

                                                                00

                                                                02

                                                                04

                                                                06

                                                                08

                                                                10

                                                                Prop

                                                                ortio

                                                                n B

                                                                iom

                                                                ass

                                                                0 10 20 300 10 20 300 10 20 300 10 20 30

                                                                10

                                                                0 10 20 30Time (hr)

                                                                00

                                                                02

                                                                04

                                                                06

                                                                08

                                                                Prop

                                                                ortio

                                                                n B

                                                                iom

                                                                ass

                                                                0 10 20 300 10 20 300 10 20 300 10 20 30

                                                                17 (99)30 (100)34 (100)33 (100)

                                                                6 (79)11 (94)11 (94)12 (96)

                                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                Parameter estimates consumption (η) amp decomposition (δ) combined

                                                                048 + 100 - 10 048= 100

                                                                048 + 79 - 7948= 089

                                                                An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                State Duration Transmission Product

                                                                Live Infected β

                                                                Dead Infected χ( )( )

                                                                11 1 1δ ηminus minus minus

                                                                βα

                                                                ( )( )1 1 1χδ ηminus minus minus

                                                                0R β χα δ η δ η

                                                                = ++ minus sdot

                                                                Life table of infection

                                                                001 06 0904 05 09 05 09

                                                                R = + =+ minus sdot

                                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                WSSV life cycle diagram3-host community

                                                                Susceptible

                                                                Susceptible

                                                                Susceptible Infected

                                                                Infected

                                                                Infected Dead

                                                                Dead

                                                                Dead

                                                                β31

                                                                χ31

                                                                χ11

                                                                β11λ1

                                                                λ2

                                                                λ3

                                                                micro1

                                                                micro2

                                                                micro3

                                                                β12 β21 χ21

                                                                α1 micro1

                                                                α2 micro2

                                                                α3 micro3

                                                                χ12

                                                                δ1 η1

                                                                δ2 η2

                                                                δ3 η3χ33

                                                                β33

                                                                χ13

                                                                β13

                                                                χ22

                                                                β32χ32

                                                                β22

                                                                χ23β23

                                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                ( ) ( )

                                                                ( ) ( )( ) ( )

                                                                ( ) ( )

                                                                ( ) ( )( ) ( )

                                                                3

                                                                1 11

                                                                3

                                                                1 1 11

                                                                1

                                                                3

                                                                2 21

                                                                3

                                                                2 2 21

                                                                2

                                                                3

                                                                1 1 0 0 0 0 0 0 0 0

                                                                1 1 1 1 0 0 0 0 0 0 0

                                                                0 1 1 1 0 0 0 0 0 0

                                                                0 0 0 1 1 0 0 0 0 0

                                                                0 0 0 1 1 1 1 0 0 0 0

                                                                0 0 0 0 1 1 1 0 0 0

                                                                0 0 0 0 0 0 1

                                                                i i

                                                                i i

                                                                i i

                                                                i i

                                                                I Di i

                                                                i

                                                                I Di i

                                                                i

                                                                I Di i

                                                                i

                                                                I Di i

                                                                i

                                                                β χ

                                                                β χ α

                                                                α δ η

                                                                β χ

                                                                β χ α

                                                                α δ η

                                                                β

                                                                =

                                                                =

                                                                =

                                                                =

                                                                minus sdot minus

                                                                minus minus sdot minus minus

                                                                minus minus sdot minus

                                                                minus sdot minus

                                                                minus minus sdot minus minus

                                                                minus minus sdot minus

                                                                minus

                                                                prod

                                                                prod

                                                                prod

                                                                prod

                                                                ( ) ( )

                                                                ( ) ( )( ) ( )

                                                                1

                                                                1

                                                                1

                                                                2

                                                                2

                                                                2

                                                                3

                                                                33

                                                                331

                                                                3

                                                                3 3 31

                                                                3

                                                                1 0 0

                                                                0 0 0 0 0 0 1 1 1 1 0

                                                                0 0 0 0 0 0 0 1 1 1

                                                                i i

                                                                i i

                                                                I Di i

                                                                i

                                                                I Di i

                                                                i

                                                                SIDSIDSIDχ

                                                                β χ α

                                                                α δ η

                                                                =

                                                                =

                                                                sdot

                                                                sdot minus

                                                                minus minus sdot minus minus minus minus sdot minus

                                                                prod

                                                                prod

                                                                WSSV 3-host community matrix model

                                                                RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                • Slide Number 1
                                                                • Slide Number 2
                                                                • Slide Number 3
                                                                • Slide Number 4
                                                                • Slide Number 5
                                                                • Slide Number 6
                                                                • Slide Number 7
                                                                • Slide Number 8
                                                                • Slide Number 9
                                                                • Emergence of White spot syndrome virus
                                                                • Slide Number 11
                                                                • Slide Number 12
                                                                • Slide Number 13
                                                                • Hosts of WSSV
                                                                • WSSV Litopenaeus vannamei
                                                                • Slide Number 16
                                                                • Slide Number 17
                                                                • Slide Number 18
                                                                • Slide Number 19
                                                                • Slide Number 20
                                                                • Slide Number 21
                                                                • Slide Number 22
                                                                • Slide Number 23
                                                                • Slide Number 24
                                                                • Slide Number 25
                                                                • Slide Number 26
                                                                • Slide Number 27
                                                                • Slide Number 28
                                                                • Slide Number 29
                                                                • Slide Number 30
                                                                • Slide Number 31
                                                                • Slide Number 32
                                                                • Slide Number 33
                                                                • Slide Number 34
                                                                • Slide Number 35
                                                                • Slide Number 36
                                                                • Slide Number 37
                                                                • Slide Number 38

                                                                  decomposition

                                                                  transmission decreases by 48 per day

                                                                  y-intercept = 0499

                                                                  0 4 8 12Days after death

                                                                  00

                                                                  02

                                                                  04

                                                                  06

                                                                  08

                                                                  10

                                                                  Tran

                                                                  smis

                                                                  sion

                                                                  χ

                                                                  Parameter estimates ndash decay of transmission (δ)

                                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                  Parameter estimates η consumption of shrimp

                                                                  24 shrimp12 shrimp

                                                                  6 shrimp1 shrimp

                                                                  FedFasted

                                                                  decrease per hr (day) decrease per hr (day)

                                                                  0 10 20 30Time (hr)

                                                                  00

                                                                  02

                                                                  04

                                                                  06

                                                                  08

                                                                  10

                                                                  Prop

                                                                  ortio

                                                                  n B

                                                                  iom

                                                                  ass

                                                                  0 10 20 300 10 20 300 10 20 300 10 20 30

                                                                  10

                                                                  0 10 20 30Time (hr)

                                                                  00

                                                                  02

                                                                  04

                                                                  06

                                                                  08

                                                                  Prop

                                                                  ortio

                                                                  n B

                                                                  iom

                                                                  ass

                                                                  0 10 20 300 10 20 300 10 20 300 10 20 30

                                                                  17 (99)30 (100)34 (100)33 (100)

                                                                  6 (79)11 (94)11 (94)12 (96)

                                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                  Parameter estimates consumption (η) amp decomposition (δ) combined

                                                                  048 + 100 - 10 048= 100

                                                                  048 + 79 - 7948= 089

                                                                  An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                  State Duration Transmission Product

                                                                  Live Infected β

                                                                  Dead Infected χ( )( )

                                                                  11 1 1δ ηminus minus minus

                                                                  βα

                                                                  ( )( )1 1 1χδ ηminus minus minus

                                                                  0R β χα δ η δ η

                                                                  = ++ minus sdot

                                                                  Life table of infection

                                                                  001 06 0904 05 09 05 09

                                                                  R = + =+ minus sdot

                                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                  WSSV life cycle diagram3-host community

                                                                  Susceptible

                                                                  Susceptible

                                                                  Susceptible Infected

                                                                  Infected

                                                                  Infected Dead

                                                                  Dead

                                                                  Dead

                                                                  β31

                                                                  χ31

                                                                  χ11

                                                                  β11λ1

                                                                  λ2

                                                                  λ3

                                                                  micro1

                                                                  micro2

                                                                  micro3

                                                                  β12 β21 χ21

                                                                  α1 micro1

                                                                  α2 micro2

                                                                  α3 micro3

                                                                  χ12

                                                                  δ1 η1

                                                                  δ2 η2

                                                                  δ3 η3χ33

                                                                  β33

                                                                  χ13

                                                                  β13

                                                                  χ22

                                                                  β32χ32

                                                                  β22

                                                                  χ23β23

                                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                  ( ) ( )

                                                                  ( ) ( )( ) ( )

                                                                  ( ) ( )

                                                                  ( ) ( )( ) ( )

                                                                  3

                                                                  1 11

                                                                  3

                                                                  1 1 11

                                                                  1

                                                                  3

                                                                  2 21

                                                                  3

                                                                  2 2 21

                                                                  2

                                                                  3

                                                                  1 1 0 0 0 0 0 0 0 0

                                                                  1 1 1 1 0 0 0 0 0 0 0

                                                                  0 1 1 1 0 0 0 0 0 0

                                                                  0 0 0 1 1 0 0 0 0 0

                                                                  0 0 0 1 1 1 1 0 0 0 0

                                                                  0 0 0 0 1 1 1 0 0 0

                                                                  0 0 0 0 0 0 1

                                                                  i i

                                                                  i i

                                                                  i i

                                                                  i i

                                                                  I Di i

                                                                  i

                                                                  I Di i

                                                                  i

                                                                  I Di i

                                                                  i

                                                                  I Di i

                                                                  i

                                                                  β χ

                                                                  β χ α

                                                                  α δ η

                                                                  β χ

                                                                  β χ α

                                                                  α δ η

                                                                  β

                                                                  =

                                                                  =

                                                                  =

                                                                  =

                                                                  minus sdot minus

                                                                  minus minus sdot minus minus

                                                                  minus minus sdot minus

                                                                  minus sdot minus

                                                                  minus minus sdot minus minus

                                                                  minus minus sdot minus

                                                                  minus

                                                                  prod

                                                                  prod

                                                                  prod

                                                                  prod

                                                                  ( ) ( )

                                                                  ( ) ( )( ) ( )

                                                                  1

                                                                  1

                                                                  1

                                                                  2

                                                                  2

                                                                  2

                                                                  3

                                                                  33

                                                                  331

                                                                  3

                                                                  3 3 31

                                                                  3

                                                                  1 0 0

                                                                  0 0 0 0 0 0 1 1 1 1 0

                                                                  0 0 0 0 0 0 0 1 1 1

                                                                  i i

                                                                  i i

                                                                  I Di i

                                                                  i

                                                                  I Di i

                                                                  i

                                                                  SIDSIDSIDχ

                                                                  β χ α

                                                                  α δ η

                                                                  =

                                                                  =

                                                                  sdot

                                                                  sdot minus

                                                                  minus minus sdot minus minus minus minus sdot minus

                                                                  prod

                                                                  prod

                                                                  WSSV 3-host community matrix model

                                                                  RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                  • Slide Number 1
                                                                  • Slide Number 2
                                                                  • Slide Number 3
                                                                  • Slide Number 4
                                                                  • Slide Number 5
                                                                  • Slide Number 6
                                                                  • Slide Number 7
                                                                  • Slide Number 8
                                                                  • Slide Number 9
                                                                  • Emergence of White spot syndrome virus
                                                                  • Slide Number 11
                                                                  • Slide Number 12
                                                                  • Slide Number 13
                                                                  • Hosts of WSSV
                                                                  • WSSV Litopenaeus vannamei
                                                                  • Slide Number 16
                                                                  • Slide Number 17
                                                                  • Slide Number 18
                                                                  • Slide Number 19
                                                                  • Slide Number 20
                                                                  • Slide Number 21
                                                                  • Slide Number 22
                                                                  • Slide Number 23
                                                                  • Slide Number 24
                                                                  • Slide Number 25
                                                                  • Slide Number 26
                                                                  • Slide Number 27
                                                                  • Slide Number 28
                                                                  • Slide Number 29
                                                                  • Slide Number 30
                                                                  • Slide Number 31
                                                                  • Slide Number 32
                                                                  • Slide Number 33
                                                                  • Slide Number 34
                                                                  • Slide Number 35
                                                                  • Slide Number 36
                                                                  • Slide Number 37
                                                                  • Slide Number 38

                                                                    Parameter estimates η consumption of shrimp

                                                                    24 shrimp12 shrimp

                                                                    6 shrimp1 shrimp

                                                                    FedFasted

                                                                    decrease per hr (day) decrease per hr (day)

                                                                    0 10 20 30Time (hr)

                                                                    00

                                                                    02

                                                                    04

                                                                    06

                                                                    08

                                                                    10

                                                                    Prop

                                                                    ortio

                                                                    n B

                                                                    iom

                                                                    ass

                                                                    0 10 20 300 10 20 300 10 20 300 10 20 30

                                                                    10

                                                                    0 10 20 30Time (hr)

                                                                    00

                                                                    02

                                                                    04

                                                                    06

                                                                    08

                                                                    Prop

                                                                    ortio

                                                                    n B

                                                                    iom

                                                                    ass

                                                                    0 10 20 300 10 20 300 10 20 300 10 20 30

                                                                    17 (99)30 (100)34 (100)33 (100)

                                                                    6 (79)11 (94)11 (94)12 (96)

                                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                    Parameter estimates consumption (η) amp decomposition (δ) combined

                                                                    048 + 100 - 10 048= 100

                                                                    048 + 79 - 7948= 089

                                                                    An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                    State Duration Transmission Product

                                                                    Live Infected β

                                                                    Dead Infected χ( )( )

                                                                    11 1 1δ ηminus minus minus

                                                                    βα

                                                                    ( )( )1 1 1χδ ηminus minus minus

                                                                    0R β χα δ η δ η

                                                                    = ++ minus sdot

                                                                    Life table of infection

                                                                    001 06 0904 05 09 05 09

                                                                    R = + =+ minus sdot

                                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                    WSSV life cycle diagram3-host community

                                                                    Susceptible

                                                                    Susceptible

                                                                    Susceptible Infected

                                                                    Infected

                                                                    Infected Dead

                                                                    Dead

                                                                    Dead

                                                                    β31

                                                                    χ31

                                                                    χ11

                                                                    β11λ1

                                                                    λ2

                                                                    λ3

                                                                    micro1

                                                                    micro2

                                                                    micro3

                                                                    β12 β21 χ21

                                                                    α1 micro1

                                                                    α2 micro2

                                                                    α3 micro3

                                                                    χ12

                                                                    δ1 η1

                                                                    δ2 η2

                                                                    δ3 η3χ33

                                                                    β33

                                                                    χ13

                                                                    β13

                                                                    χ22

                                                                    β32χ32

                                                                    β22

                                                                    χ23β23

                                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                    ( ) ( )

                                                                    ( ) ( )( ) ( )

                                                                    ( ) ( )

                                                                    ( ) ( )( ) ( )

                                                                    3

                                                                    1 11

                                                                    3

                                                                    1 1 11

                                                                    1

                                                                    3

                                                                    2 21

                                                                    3

                                                                    2 2 21

                                                                    2

                                                                    3

                                                                    1 1 0 0 0 0 0 0 0 0

                                                                    1 1 1 1 0 0 0 0 0 0 0

                                                                    0 1 1 1 0 0 0 0 0 0

                                                                    0 0 0 1 1 0 0 0 0 0

                                                                    0 0 0 1 1 1 1 0 0 0 0

                                                                    0 0 0 0 1 1 1 0 0 0

                                                                    0 0 0 0 0 0 1

                                                                    i i

                                                                    i i

                                                                    i i

                                                                    i i

                                                                    I Di i

                                                                    i

                                                                    I Di i

                                                                    i

                                                                    I Di i

                                                                    i

                                                                    I Di i

                                                                    i

                                                                    β χ

                                                                    β χ α

                                                                    α δ η

                                                                    β χ

                                                                    β χ α

                                                                    α δ η

                                                                    β

                                                                    =

                                                                    =

                                                                    =

                                                                    =

                                                                    minus sdot minus

                                                                    minus minus sdot minus minus

                                                                    minus minus sdot minus

                                                                    minus sdot minus

                                                                    minus minus sdot minus minus

                                                                    minus minus sdot minus

                                                                    minus

                                                                    prod

                                                                    prod

                                                                    prod

                                                                    prod

                                                                    ( ) ( )

                                                                    ( ) ( )( ) ( )

                                                                    1

                                                                    1

                                                                    1

                                                                    2

                                                                    2

                                                                    2

                                                                    3

                                                                    33

                                                                    331

                                                                    3

                                                                    3 3 31

                                                                    3

                                                                    1 0 0

                                                                    0 0 0 0 0 0 1 1 1 1 0

                                                                    0 0 0 0 0 0 0 1 1 1

                                                                    i i

                                                                    i i

                                                                    I Di i

                                                                    i

                                                                    I Di i

                                                                    i

                                                                    SIDSIDSIDχ

                                                                    β χ α

                                                                    α δ η

                                                                    =

                                                                    =

                                                                    sdot

                                                                    sdot minus

                                                                    minus minus sdot minus minus minus minus sdot minus

                                                                    prod

                                                                    prod

                                                                    WSSV 3-host community matrix model

                                                                    RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                    • Slide Number 1
                                                                    • Slide Number 2
                                                                    • Slide Number 3
                                                                    • Slide Number 4
                                                                    • Slide Number 5
                                                                    • Slide Number 6
                                                                    • Slide Number 7
                                                                    • Slide Number 8
                                                                    • Slide Number 9
                                                                    • Emergence of White spot syndrome virus
                                                                    • Slide Number 11
                                                                    • Slide Number 12
                                                                    • Slide Number 13
                                                                    • Hosts of WSSV
                                                                    • WSSV Litopenaeus vannamei
                                                                    • Slide Number 16
                                                                    • Slide Number 17
                                                                    • Slide Number 18
                                                                    • Slide Number 19
                                                                    • Slide Number 20
                                                                    • Slide Number 21
                                                                    • Slide Number 22
                                                                    • Slide Number 23
                                                                    • Slide Number 24
                                                                    • Slide Number 25
                                                                    • Slide Number 26
                                                                    • Slide Number 27
                                                                    • Slide Number 28
                                                                    • Slide Number 29
                                                                    • Slide Number 30
                                                                    • Slide Number 31
                                                                    • Slide Number 32
                                                                    • Slide Number 33
                                                                    • Slide Number 34
                                                                    • Slide Number 35
                                                                    • Slide Number 36
                                                                    • Slide Number 37
                                                                    • Slide Number 38

                                                                      Parameter estimates consumption (η) amp decomposition (δ) combined

                                                                      048 + 100 - 10 048= 100

                                                                      048 + 79 - 7948= 089

                                                                      An infected dead shrimp retains about 0 ndash 10 of its infectivity per day

                                                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                      State Duration Transmission Product

                                                                      Live Infected β

                                                                      Dead Infected χ( )( )

                                                                      11 1 1δ ηminus minus minus

                                                                      βα

                                                                      ( )( )1 1 1χδ ηminus minus minus

                                                                      0R β χα δ η δ η

                                                                      = ++ minus sdot

                                                                      Life table of infection

                                                                      001 06 0904 05 09 05 09

                                                                      R = + =+ minus sdot

                                                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                      WSSV life cycle diagram3-host community

                                                                      Susceptible

                                                                      Susceptible

                                                                      Susceptible Infected

                                                                      Infected

                                                                      Infected Dead

                                                                      Dead

                                                                      Dead

                                                                      β31

                                                                      χ31

                                                                      χ11

                                                                      β11λ1

                                                                      λ2

                                                                      λ3

                                                                      micro1

                                                                      micro2

                                                                      micro3

                                                                      β12 β21 χ21

                                                                      α1 micro1

                                                                      α2 micro2

                                                                      α3 micro3

                                                                      χ12

                                                                      δ1 η1

                                                                      δ2 η2

                                                                      δ3 η3χ33

                                                                      β33

                                                                      χ13

                                                                      β13

                                                                      χ22

                                                                      β32χ32

                                                                      β22

                                                                      χ23β23

                                                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                      ( ) ( )

                                                                      ( ) ( )( ) ( )

                                                                      ( ) ( )

                                                                      ( ) ( )( ) ( )

                                                                      3

                                                                      1 11

                                                                      3

                                                                      1 1 11

                                                                      1

                                                                      3

                                                                      2 21

                                                                      3

                                                                      2 2 21

                                                                      2

                                                                      3

                                                                      1 1 0 0 0 0 0 0 0 0

                                                                      1 1 1 1 0 0 0 0 0 0 0

                                                                      0 1 1 1 0 0 0 0 0 0

                                                                      0 0 0 1 1 0 0 0 0 0

                                                                      0 0 0 1 1 1 1 0 0 0 0

                                                                      0 0 0 0 1 1 1 0 0 0

                                                                      0 0 0 0 0 0 1

                                                                      i i

                                                                      i i

                                                                      i i

                                                                      i i

                                                                      I Di i

                                                                      i

                                                                      I Di i

                                                                      i

                                                                      I Di i

                                                                      i

                                                                      I Di i

                                                                      i

                                                                      β χ

                                                                      β χ α

                                                                      α δ η

                                                                      β χ

                                                                      β χ α

                                                                      α δ η

                                                                      β

                                                                      =

                                                                      =

                                                                      =

                                                                      =

                                                                      minus sdot minus

                                                                      minus minus sdot minus minus

                                                                      minus minus sdot minus

                                                                      minus sdot minus

                                                                      minus minus sdot minus minus

                                                                      minus minus sdot minus

                                                                      minus

                                                                      prod

                                                                      prod

                                                                      prod

                                                                      prod

                                                                      ( ) ( )

                                                                      ( ) ( )( ) ( )

                                                                      1

                                                                      1

                                                                      1

                                                                      2

                                                                      2

                                                                      2

                                                                      3

                                                                      33

                                                                      331

                                                                      3

                                                                      3 3 31

                                                                      3

                                                                      1 0 0

                                                                      0 0 0 0 0 0 1 1 1 1 0

                                                                      0 0 0 0 0 0 0 1 1 1

                                                                      i i

                                                                      i i

                                                                      I Di i

                                                                      i

                                                                      I Di i

                                                                      i

                                                                      SIDSIDSIDχ

                                                                      β χ α

                                                                      α δ η

                                                                      =

                                                                      =

                                                                      sdot

                                                                      sdot minus

                                                                      minus minus sdot minus minus minus minus sdot minus

                                                                      prod

                                                                      prod

                                                                      WSSV 3-host community matrix model

                                                                      RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                      • Slide Number 1
                                                                      • Slide Number 2
                                                                      • Slide Number 3
                                                                      • Slide Number 4
                                                                      • Slide Number 5
                                                                      • Slide Number 6
                                                                      • Slide Number 7
                                                                      • Slide Number 8
                                                                      • Slide Number 9
                                                                      • Emergence of White spot syndrome virus
                                                                      • Slide Number 11
                                                                      • Slide Number 12
                                                                      • Slide Number 13
                                                                      • Hosts of WSSV
                                                                      • WSSV Litopenaeus vannamei
                                                                      • Slide Number 16
                                                                      • Slide Number 17
                                                                      • Slide Number 18
                                                                      • Slide Number 19
                                                                      • Slide Number 20
                                                                      • Slide Number 21
                                                                      • Slide Number 22
                                                                      • Slide Number 23
                                                                      • Slide Number 24
                                                                      • Slide Number 25
                                                                      • Slide Number 26
                                                                      • Slide Number 27
                                                                      • Slide Number 28
                                                                      • Slide Number 29
                                                                      • Slide Number 30
                                                                      • Slide Number 31
                                                                      • Slide Number 32
                                                                      • Slide Number 33
                                                                      • Slide Number 34
                                                                      • Slide Number 35
                                                                      • Slide Number 36
                                                                      • Slide Number 37
                                                                      • Slide Number 38

                                                                        State Duration Transmission Product

                                                                        Live Infected β

                                                                        Dead Infected χ( )( )

                                                                        11 1 1δ ηminus minus minus

                                                                        βα

                                                                        ( )( )1 1 1χδ ηminus minus minus

                                                                        0R β χα δ η δ η

                                                                        = ++ minus sdot

                                                                        Life table of infection

                                                                        001 06 0904 05 09 05 09

                                                                        R = + =+ minus sdot

                                                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                        WSSV life cycle diagram3-host community

                                                                        Susceptible

                                                                        Susceptible

                                                                        Susceptible Infected

                                                                        Infected

                                                                        Infected Dead

                                                                        Dead

                                                                        Dead

                                                                        β31

                                                                        χ31

                                                                        χ11

                                                                        β11λ1

                                                                        λ2

                                                                        λ3

                                                                        micro1

                                                                        micro2

                                                                        micro3

                                                                        β12 β21 χ21

                                                                        α1 micro1

                                                                        α2 micro2

                                                                        α3 micro3

                                                                        χ12

                                                                        δ1 η1

                                                                        δ2 η2

                                                                        δ3 η3χ33

                                                                        β33

                                                                        χ13

                                                                        β13

                                                                        χ22

                                                                        β32χ32

                                                                        β22

                                                                        χ23β23

                                                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                        ( ) ( )

                                                                        ( ) ( )( ) ( )

                                                                        ( ) ( )

                                                                        ( ) ( )( ) ( )

                                                                        3

                                                                        1 11

                                                                        3

                                                                        1 1 11

                                                                        1

                                                                        3

                                                                        2 21

                                                                        3

                                                                        2 2 21

                                                                        2

                                                                        3

                                                                        1 1 0 0 0 0 0 0 0 0

                                                                        1 1 1 1 0 0 0 0 0 0 0

                                                                        0 1 1 1 0 0 0 0 0 0

                                                                        0 0 0 1 1 0 0 0 0 0

                                                                        0 0 0 1 1 1 1 0 0 0 0

                                                                        0 0 0 0 1 1 1 0 0 0

                                                                        0 0 0 0 0 0 1

                                                                        i i

                                                                        i i

                                                                        i i

                                                                        i i

                                                                        I Di i

                                                                        i

                                                                        I Di i

                                                                        i

                                                                        I Di i

                                                                        i

                                                                        I Di i

                                                                        i

                                                                        β χ

                                                                        β χ α

                                                                        α δ η

                                                                        β χ

                                                                        β χ α

                                                                        α δ η

                                                                        β

                                                                        =

                                                                        =

                                                                        =

                                                                        =

                                                                        minus sdot minus

                                                                        minus minus sdot minus minus

                                                                        minus minus sdot minus

                                                                        minus sdot minus

                                                                        minus minus sdot minus minus

                                                                        minus minus sdot minus

                                                                        minus

                                                                        prod

                                                                        prod

                                                                        prod

                                                                        prod

                                                                        ( ) ( )

                                                                        ( ) ( )( ) ( )

                                                                        1

                                                                        1

                                                                        1

                                                                        2

                                                                        2

                                                                        2

                                                                        3

                                                                        33

                                                                        331

                                                                        3

                                                                        3 3 31

                                                                        3

                                                                        1 0 0

                                                                        0 0 0 0 0 0 1 1 1 1 0

                                                                        0 0 0 0 0 0 0 1 1 1

                                                                        i i

                                                                        i i

                                                                        I Di i

                                                                        i

                                                                        I Di i

                                                                        i

                                                                        SIDSIDSIDχ

                                                                        β χ α

                                                                        α δ η

                                                                        =

                                                                        =

                                                                        sdot

                                                                        sdot minus

                                                                        minus minus sdot minus minus minus minus sdot minus

                                                                        prod

                                                                        prod

                                                                        WSSV 3-host community matrix model

                                                                        RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                        • Slide Number 1
                                                                        • Slide Number 2
                                                                        • Slide Number 3
                                                                        • Slide Number 4
                                                                        • Slide Number 5
                                                                        • Slide Number 6
                                                                        • Slide Number 7
                                                                        • Slide Number 8
                                                                        • Slide Number 9
                                                                        • Emergence of White spot syndrome virus
                                                                        • Slide Number 11
                                                                        • Slide Number 12
                                                                        • Slide Number 13
                                                                        • Hosts of WSSV
                                                                        • WSSV Litopenaeus vannamei
                                                                        • Slide Number 16
                                                                        • Slide Number 17
                                                                        • Slide Number 18
                                                                        • Slide Number 19
                                                                        • Slide Number 20
                                                                        • Slide Number 21
                                                                        • Slide Number 22
                                                                        • Slide Number 23
                                                                        • Slide Number 24
                                                                        • Slide Number 25
                                                                        • Slide Number 26
                                                                        • Slide Number 27
                                                                        • Slide Number 28
                                                                        • Slide Number 29
                                                                        • Slide Number 30
                                                                        • Slide Number 31
                                                                        • Slide Number 32
                                                                        • Slide Number 33
                                                                        • Slide Number 34
                                                                        • Slide Number 35
                                                                        • Slide Number 36
                                                                        • Slide Number 37
                                                                        • Slide Number 38

                                                                          WSSV life cycle diagram3-host community

                                                                          Susceptible

                                                                          Susceptible

                                                                          Susceptible Infected

                                                                          Infected

                                                                          Infected Dead

                                                                          Dead

                                                                          Dead

                                                                          β31

                                                                          χ31

                                                                          χ11

                                                                          β11λ1

                                                                          λ2

                                                                          λ3

                                                                          micro1

                                                                          micro2

                                                                          micro3

                                                                          β12 β21 χ21

                                                                          α1 micro1

                                                                          α2 micro2

                                                                          α3 micro3

                                                                          χ12

                                                                          δ1 η1

                                                                          δ2 η2

                                                                          δ3 η3χ33

                                                                          β33

                                                                          χ13

                                                                          β13

                                                                          χ22

                                                                          β32χ32

                                                                          β22

                                                                          χ23β23

                                                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                          ( ) ( )

                                                                          ( ) ( )( ) ( )

                                                                          ( ) ( )

                                                                          ( ) ( )( ) ( )

                                                                          3

                                                                          1 11

                                                                          3

                                                                          1 1 11

                                                                          1

                                                                          3

                                                                          2 21

                                                                          3

                                                                          2 2 21

                                                                          2

                                                                          3

                                                                          1 1 0 0 0 0 0 0 0 0

                                                                          1 1 1 1 0 0 0 0 0 0 0

                                                                          0 1 1 1 0 0 0 0 0 0

                                                                          0 0 0 1 1 0 0 0 0 0

                                                                          0 0 0 1 1 1 1 0 0 0 0

                                                                          0 0 0 0 1 1 1 0 0 0

                                                                          0 0 0 0 0 0 1

                                                                          i i

                                                                          i i

                                                                          i i

                                                                          i i

                                                                          I Di i

                                                                          i

                                                                          I Di i

                                                                          i

                                                                          I Di i

                                                                          i

                                                                          I Di i

                                                                          i

                                                                          β χ

                                                                          β χ α

                                                                          α δ η

                                                                          β χ

                                                                          β χ α

                                                                          α δ η

                                                                          β

                                                                          =

                                                                          =

                                                                          =

                                                                          =

                                                                          minus sdot minus

                                                                          minus minus sdot minus minus

                                                                          minus minus sdot minus

                                                                          minus sdot minus

                                                                          minus minus sdot minus minus

                                                                          minus minus sdot minus

                                                                          minus

                                                                          prod

                                                                          prod

                                                                          prod

                                                                          prod

                                                                          ( ) ( )

                                                                          ( ) ( )( ) ( )

                                                                          1

                                                                          1

                                                                          1

                                                                          2

                                                                          2

                                                                          2

                                                                          3

                                                                          33

                                                                          331

                                                                          3

                                                                          3 3 31

                                                                          3

                                                                          1 0 0

                                                                          0 0 0 0 0 0 1 1 1 1 0

                                                                          0 0 0 0 0 0 0 1 1 1

                                                                          i i

                                                                          i i

                                                                          I Di i

                                                                          i

                                                                          I Di i

                                                                          i

                                                                          SIDSIDSIDχ

                                                                          β χ α

                                                                          α δ η

                                                                          =

                                                                          =

                                                                          sdot

                                                                          sdot minus

                                                                          minus minus sdot minus minus minus minus sdot minus

                                                                          prod

                                                                          prod

                                                                          WSSV 3-host community matrix model

                                                                          RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                          • Slide Number 1
                                                                          • Slide Number 2
                                                                          • Slide Number 3
                                                                          • Slide Number 4
                                                                          • Slide Number 5
                                                                          • Slide Number 6
                                                                          • Slide Number 7
                                                                          • Slide Number 8
                                                                          • Slide Number 9
                                                                          • Emergence of White spot syndrome virus
                                                                          • Slide Number 11
                                                                          • Slide Number 12
                                                                          • Slide Number 13
                                                                          • Hosts of WSSV
                                                                          • WSSV Litopenaeus vannamei
                                                                          • Slide Number 16
                                                                          • Slide Number 17
                                                                          • Slide Number 18
                                                                          • Slide Number 19
                                                                          • Slide Number 20
                                                                          • Slide Number 21
                                                                          • Slide Number 22
                                                                          • Slide Number 23
                                                                          • Slide Number 24
                                                                          • Slide Number 25
                                                                          • Slide Number 26
                                                                          • Slide Number 27
                                                                          • Slide Number 28
                                                                          • Slide Number 29
                                                                          • Slide Number 30
                                                                          • Slide Number 31
                                                                          • Slide Number 32
                                                                          • Slide Number 33
                                                                          • Slide Number 34
                                                                          • Slide Number 35
                                                                          • Slide Number 36
                                                                          • Slide Number 37
                                                                          • Slide Number 38

                                                                            ( ) ( )

                                                                            ( ) ( )( ) ( )

                                                                            ( ) ( )

                                                                            ( ) ( )( ) ( )

                                                                            3

                                                                            1 11

                                                                            3

                                                                            1 1 11

                                                                            1

                                                                            3

                                                                            2 21

                                                                            3

                                                                            2 2 21

                                                                            2

                                                                            3

                                                                            1 1 0 0 0 0 0 0 0 0

                                                                            1 1 1 1 0 0 0 0 0 0 0

                                                                            0 1 1 1 0 0 0 0 0 0

                                                                            0 0 0 1 1 0 0 0 0 0

                                                                            0 0 0 1 1 1 1 0 0 0 0

                                                                            0 0 0 0 1 1 1 0 0 0

                                                                            0 0 0 0 0 0 1

                                                                            i i

                                                                            i i

                                                                            i i

                                                                            i i

                                                                            I Di i

                                                                            i

                                                                            I Di i

                                                                            i

                                                                            I Di i

                                                                            i

                                                                            I Di i

                                                                            i

                                                                            β χ

                                                                            β χ α

                                                                            α δ η

                                                                            β χ

                                                                            β χ α

                                                                            α δ η

                                                                            β

                                                                            =

                                                                            =

                                                                            =

                                                                            =

                                                                            minus sdot minus

                                                                            minus minus sdot minus minus

                                                                            minus minus sdot minus

                                                                            minus sdot minus

                                                                            minus minus sdot minus minus

                                                                            minus minus sdot minus

                                                                            minus

                                                                            prod

                                                                            prod

                                                                            prod

                                                                            prod

                                                                            ( ) ( )

                                                                            ( ) ( )( ) ( )

                                                                            1

                                                                            1

                                                                            1

                                                                            2

                                                                            2

                                                                            2

                                                                            3

                                                                            33

                                                                            331

                                                                            3

                                                                            3 3 31

                                                                            3

                                                                            1 0 0

                                                                            0 0 0 0 0 0 1 1 1 1 0

                                                                            0 0 0 0 0 0 0 1 1 1

                                                                            i i

                                                                            i i

                                                                            I Di i

                                                                            i

                                                                            I Di i

                                                                            i

                                                                            SIDSIDSIDχ

                                                                            β χ α

                                                                            α δ η

                                                                            =

                                                                            =

                                                                            sdot

                                                                            sdot minus

                                                                            minus minus sdot minus minus minus minus sdot minus

                                                                            prod

                                                                            prod

                                                                            WSSV 3-host community matrix model

                                                                            RCN Marine Disease Modeling and Transmission Workshop ndash May 2015

                                                                            • Slide Number 1
                                                                            • Slide Number 2
                                                                            • Slide Number 3
                                                                            • Slide Number 4
                                                                            • Slide Number 5
                                                                            • Slide Number 6
                                                                            • Slide Number 7
                                                                            • Slide Number 8
                                                                            • Slide Number 9
                                                                            • Emergence of White spot syndrome virus
                                                                            • Slide Number 11
                                                                            • Slide Number 12
                                                                            • Slide Number 13
                                                                            • Hosts of WSSV
                                                                            • WSSV Litopenaeus vannamei
                                                                            • Slide Number 16
                                                                            • Slide Number 17
                                                                            • Slide Number 18
                                                                            • Slide Number 19
                                                                            • Slide Number 20
                                                                            • Slide Number 21
                                                                            • Slide Number 22
                                                                            • Slide Number 23
                                                                            • Slide Number 24
                                                                            • Slide Number 25
                                                                            • Slide Number 26
                                                                            • Slide Number 27
                                                                            • Slide Number 28
                                                                            • Slide Number 29
                                                                            • Slide Number 30
                                                                            • Slide Number 31
                                                                            • Slide Number 32
                                                                            • Slide Number 33
                                                                            • Slide Number 34
                                                                            • Slide Number 35
                                                                            • Slide Number 36
                                                                            • Slide Number 37
                                                                            • Slide Number 38

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