The historical biogeography of Mammalia€¦ · Research The historical biogeography of Mammalia Mark S. Springer1,*, Robert W. Meredith1, Jan E. Janecka2 and William J. Murphy2 1Department

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doi 101098rstb20110023 2478-2502366 2011 Phil Trans R Soc B

Mark S Springer Robert W Meredith Jan E Janecka and William J Murphy The historical biogeography of Mammalia

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Phil Trans R Soc B (2011) 366 2478ndash2502

doi101098rstb20110023

Research

Autho

One conmamma

The historical biogeography of MammaliaMark S Springer1 Robert W Meredith1 Jan E Janecka2

and William J Murphy2

1Department of Biology University of California Riverside CA 92521 USA2Department of Veterinary Integrative Biosciences College of Veterinary Medicine and Biomedical Sciences

Texas AampM University College Station TX 77843 USA

Palaeobiogeographic reconstructions are underpinned by phylogenies divergence times and ances-tral area reconstructions which together yield ancestral area chronograms that provide a basis forproposing and testing hypotheses of dispersal and vicariance Methods for area coding includemulti-state coding with a single character binary coding with multiple characters and stringcoding Ancestral reconstruction methods are divided into parsimony versus Bayesianlikelihoodapproaches We compared nine methods for reconstructing ancestral areas for placental mammalsAmbiguous reconstructions were a problem for all methods Important differences resulted fromcoding areas based on the geographical ranges of extant species versus the geographical provenanceof the oldest fossil for each lineage Africa and South America were reconstructed as the ancestralareas for Afrotheria and Xenarthra respectively Most methods reconstructed Eurasia as the ances-tral area for Boreoeutheria Euarchontoglires and Laurasiatheria The coincidence of moleculardates for the separation of Afrotheria and Xenarthra at approximately 100 Ma with the plate tec-tonic sundering of Africa and South America hints at the importance of vicariance in the earlyhistory of Placentalia Dispersal has also been important including the origins of Madagascarrsquosendemic mammal fauna Further studies will benefit from increased taxon sampling and theapplication of new ancestral area reconstruction methods

Keywords ancestral areas dispersal historical biogeography Mammalia vicariance

1 INTRODUCTIONClass Mammalia is impressive for its taxonomic ecologi-cal and morphological diversity [1] A fundamental goalof mammalian palaeobiogeography is to reconstruct theunderlying history of vicariant and dispersal events thathave shaped this diversity Here we highlight theimportance of phylogeny reconstruction ancestral areareconstruction and molecular dating for producingancestral area chronograms We compare differentapproaches for reconstructing ancestral areas andillustrate similarities and differences between theseapproaches using a dataset for placental mammals Weconclude with a review of selected topics in placentalmammal palaeogeography that illustrates how phyloge-nies ancestral area reconstructions molecular datesand palaeographic histories have reshaped our views onmammalian historical biogeography Finally we identifyimportant areas for future inquiry

2 PHYLOGENY RECONSTRUCTIONPhylogeny reconstruction begins with character dataLarge molecular datasets have yielded robust phyloge-nies for many groups thereby reducing the number of

r for correspondence (markspringerucredu)

tribution of 12 to a Theme Issue lsquoGlobal biodiversity oflsrsquo

2478

phylogenetic hypotheses that must be considered whenformulating ancestral area chronograms The inclusionof morphological data from fossils allows for taxono-mically richer phylogenies while also providing keydata points that bear on the geographical provenanceof a taxonomic group In the words of Simpson [2]fossils lsquoare the historical documents of animal distri-butionrsquo Fossils are also more difficult to place withconfidence in a phylogenetic framework owing to miss-ing (molecular) data and the inability of currentmethods to separate homology and homoplasy withsome morphological datasets [34]

Maximum parsimony (MP) and maximum likeli-hood (ML) yield a single best tree(s) whereasBayesian methods yield a sampling of trees from pos-terior probability space ML and Bayesian methodshave the advantage of incorporating models ofsequence evolution and yield trees with branchlengths Some ancestral area reconstruction methodssuch as those implemented in SIMMAP [5] cantake advantage of trees with branch lengths as wellas multiple trees from posterior probability space

Phylogeny reconstruction is usually the first step inconstructing an ancestral area chronogram followedby the estimation of divergence times at each of thenodes However BEAST [6] allows for simultaneousestimation of branching relationships and divergencetimes After reconstructing a phylogeny molecular

This journal is q 2011 The Royal Society

palaeobiogeographicreconstructions

phylogenies

paleontologicaldata

chronograms

ancestral areachronograms

moleculardating

palaeogeographicreconstructions

geophysicsclimatologysedimentologystratigraphygeology

phylogenyreconstruction

ancestral areareconstruction

neontologicaldata

general area chronogram

Figure 1 A flowchart of the approach used for incorporating different types of data in conjunction with methods in phylogenyreconstruction molecular dating and ancestral area reconstruction for inferring ancestral area chronograms and palaeobiogeo-graphic history

Mammalian historical biogeography M S Springer et al 2479

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dating analyses and ancestral area reconstructions canbe performed in parallel or in series and thenintegrated to yield an ancestral area chronogram(figure 1)

3 MOLECULAR DATING ANALYSESMolecular clocks were introduced by Zuckerkandl ampPauling [7] but have fallen out of favour owing tothe prevalence of lineage-specific rate variation Theemergence of relaxed molecular clock methods haspromoted a resurgence of studies that have examinedboth interordinal and intraordinal divergence timesin Mammalia [8ndash23] Relaxed clock methods includepenalized likelihood approaches [2425] and BayesianMarkov chain Monte Carlo methods such as multidiv-time [26] BEAST [6] and mcmctree [27] It is useful tocompare both the results of different programs and theresults of the same program under different model andparameter settings [28ndash30]

An important difference between BEASTand multi-divtime is that BEAST allows rates to vary randomlyover lineages in a phylogeny whereas multidivtimeassumes autocorrelated rates In simulation studiesBEAST performed poorly when rates were autocorre-lated whereas multidivtime performed poorly whenthere was uncorrelated rate variation [28] Giventhese results Battistuzzi et al [28] recommended com-posite 95 credibility intervals

Relaxed clock methods allow for multiple calibra-tions including minimum and maximum constraintson individual nodes Multidivtime only allows forlsquohardrsquo constraints whereas BEAST and mcmctree pro-vide other options including lsquosoftrsquo constraints thatpermit specification of a given percentage (eg 95)of the normal distribution between the minimumand maximum with half of the remainder (eg25) allocated to each tail

Phil Trans R Soc B (2011)

4 ANCESTRAL AREA RECONSTRUCTIONMethods for reconstructing historical biogeographyinclude dispersalism phylogenetic biogeography pan-biogeography parsimony analysis of endemicity andcladistic biogeography [31] Early reconstructions ofmammalian historical biogeography were based on dis-persalism and land bridges [232] and pre-date thegeneral acceptance of plate tectonic theory Sub-sequently cladistic biogeography emphasized vicarianceas the most important factor in diversification bydiscovering dichotomous area relationships (area clado-grams) from taxon cladograms In response to thisparadigm which paid little regard to dispersal andextinction Ronquist [33] proposed dispersalndashvicarianceanalysis (DIVA) for reconstructing patterns of historicalbiogeography [34] DIVA infers ancestral areas by mini-mizing the number of dispersal and extinction eventsRecent methods that build on Ronquistrsquos work includeBayes-DIVA [35] and dispersalndashextinction cladogenesis(DEC) [3637]

A fundamental issue in ancestral area reconstructionis area coding Areas are usually coded to include theentire geographical range of each species Other optionsinclude coding the entire area of the monophyletic cladethat is represented by the species or the geographicalarea of the oldest fossil belonging to each lineage Anadditional topic worthy of investigation is the problemof coding geographical areas for taxa from the geologicalpast versus the present given that areas as well as theirboundaries and physical relationships to each othercan fluctuate over time Parametric methods such asDEC which allow for changing dispersal probabilitiesover time provide a mechanism to accommodate theimpact of continental fragmentation and suturing on his-torical biogeography

Three general approaches are available for codingareas (box 1) whether for living species fossils orlarger monophyletic groups The first method is

Box 1 Methods for coding areas and analysing area-coded data matrices

I Area coding1 single multi-state character coding Individual character states are non-overlapping and correspond to a single areadisadvantages ranges are limited to a single area (character state) unless they are coded as polymorphic2 binary character coding with multiple characters Each binary character corresponds to the presenceabsence of a taxonin a single areaadvantages allows for the occupation of multiple areasdisadvantages ancestral areas may receive no state assignments3 string character coding (frac14polymorphism coding)advantages individual character states may include one or more areasdisadvantages the number of character states becomes intractable when there are too many individual areas

II Ancestral area reconstruction1 monomorphic ancestral area reconstruction methods These methods are used in conjunction with area data that havebeen coded as a single multi-state charactera Fitch parsimony (eg MACCLADE)b stochastic mapping (eg SIMMAP)advantages stochastic mapping allows for branch lengths and multiple treesdisadvantages methods in this category implicitly assume that different character states (areas) are homologous toeach other and attempt to find a single ancestral area (character state) at each node2 polymorphic ancestral area reconstruction methods These methods allow for ancestral areas that encompass more thanone area and employ either binary character data for multiple characters or string character dataa Fitch parsimony (eg MACCLADE) with multiple binary charactersb stochastic mapping (eg SIMMAP) with multiple binary charactersc dispersalndashvicariance (DIVA)d Bayes-DIVAe dispersalndashextinction cladogenesis (DEC)f minimum area change (MAC) parsimonyadvantages all methods in this category allow for reconstructions that include multiple areas per node Stochasticmapping and DEC incorporate branch lengths stochastic mapping and Bayes-DIVA allow for multiple treesdisadvantages methods that employ multiple binary characters can result in empty ancestral area reconstructionsFitch parsimony MAC parsimony and DIVA ignore branch length information DIVA Bayes-DIVA and DEC arebiased towards ancestral reconstructions that include numerous individual areas

2480 M S Springer et al Mammalian historical biogeography

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single character multi-state coding with non-overlap-ping character states The second method is binarycharacter coding with multiple characters whereeach character represents the presence or absence ofa taxon in a single area In contrast to the firstmethod this approach allows ancestral nodes toencompass more than one area Ancestral area recon-structions are simply the sum of the individual areareconstructions A disadvantage of this approach isthat ancestral areas may receive lsquono-statersquo assignmentswhich imply empty ancestral areas No-state assign-ments are an artefact of the character independenceassumption [38] Finally string character coding[37] allows individual character states to include oneor more geographical areas Specifically the geo-graphical range of a species is coded as a stringdenoting its presenceabsence in a set of individualareas Ree amp Smithrsquos [37] string character coding isequivalent to Maddison amp Maddisonrsquos [39] poly-morphism coding

Ancestral reconstruction methods can be dividedinto parsimony versus Bayesianlikelihood approaches[40] Only the latter takes advantage of branch lengthsAnother useful distinction is between methods thatreconstruct ancestral nodes as monomorphic characterstates versus those that allow for range expansion andcontraction

MP and ML methods employ discrete-state tran-sition models and reconstruct ancestral nodes asmonomorphic Monomorphic methods for character

Phil Trans R Soc B (2011)

state reconstruction assume that different characterstates are homologous to each other as is the casefor characters that pass Pattersonrsquos [41] conjunctiontest which states that two structures that are foundin the same organism cannot be homologous How-ever this test is nonsensical when applied togeographical areas because the presence of a speciesin one area does not rule out its presence in anotherarea

Other ancestral range reconstruction methods havethe advantage of allowing for polymorphic ancestralstates and thereby accommodating range expansionand contraction (box 1) [40] Polymorphic reconstruc-tions can be achieved using (i) monomorphic methodswith multiple binary characters each of which codesfor the presenceabsence of a taxon in one area and(ii) polymorphic methods that allow ancestral nodesto include one or more areas

Fitch parsimony and stochastic mapping can beused to reconstruct ancestral nodes for multiplebinary characters and then summed over all characterreconstructions to obtain the complete set of areas foreach ancestral node One difficulty is ancestral nodeswith no-state assignments In these instances multipleinterpretations are possible including vicariance of anancestral area that was not included in the originalanalysis If there is geological evidence for formerlycontiguous areas this information may be incorpor-ated into ancillary characters to assist ancestral areareconstructions

A B C D E F G H I J K L M N O A mdash 2 2 2 1 1 1 3 3 3 2 2 2 4 3 B 2 mdash 2 2 1 3 3 1 1 3 2 2 4 2 3 C 2 2 mdash 2 3 1 3 1 3 1 2 4 2 2 3 D 2 2 2 mdash 3 3 1 3 1 1 4 2 2 2 3 E 1 1 3 3 mdash 2 2 2 2 4 1 1 3 3 2 F 1 3 1 3 2 mdash 2 2 4 2 1 3 1 3 2 G 1 3 3 1 2 2 mdash 4 2 2 3 1 1 3 2 H 3 1 1 3 2 2 4 mdash 2 2 1 3 3 1 2 I 3 1 3 1 2 4 2 2 mdash 2 3 1 3 1 2 J 3 3 1 1 4 2 2 2 2 mdash 3 3 1 1 2 K 2 2 2 4 1 1 3 1 3 3 mdash 2 2 2 1 L 2 2 4 2 1 3 1 3 1 3 2 mdash 2 2 1 M 2 4 2 2 3 1 1 3 3 1 2 2 mdash 2 1 N 4 2 2 2 3 3 3 1 1 1 2 2 2 mdash 1 O 3 3 3 3 2 2 2 2 2 2 1 1 1 1 mdash

A = Africa B = Eurasia C = North America D = South America E = Africa + Eurasia F = Africa + North America G = Africa + South America H = Eurasia + North America I = Eurasia + South America

J = North America + South America

K = Africa + Eurasia + North America

L = Africa + Eurasia + South America

M = Africa + North America + South America

N = Eurasia + North America + South America

O = Africa + Eurasia + North America + South America

Figure 2 Example of a step matrix for minimum area change (MAC) parsimony MAC parsimony assigns equal cost to allgains and losses of an area For example a change in area from A (Africa) to G (Africa thorn South America) requires onestep (gain South America) whereas a change from A to H (Eurasia thornNorth America) requires three steps (Africa loss Eurasiagain North America gain) The step matrix is fully symmetrical

Mammalian historical biogeography M S Springer et al 2481

on October 29 2012rstbroyalsocietypublishingorgDownloaded from

In contrast to methods that were co-opted fromphylogenetics DIVA [33] and DEC [363742] weredeveloped explicitly for historical biogeographicreconstruction DIVA assigns no cost to widespreadancestral areas that are subdivided by vicariance butassigns a cost to dispersal and local extinctionevents DIVA ignores branch lengths DEC uses a con-tinuous time model for geographical range evolutionand employs string character coding to accommodatepolymorphic areas DEC permits range expansionthrough dispersal events and range contractionthrough local extinction events DEC also allowsareas of implausible distribution to be excludedsuch as those that are geographically discontinuous[43] DIVA and DEC are prone to reconstructingancestral areas that include too many individualareas especially towards the root of the tree Howeverboth programmes have options for limiting thenumber of ancestral areas

An additional approach that we introduce is mini-mum area change (MAC) parsimony which usespolymorphic character coding [39] and Sankoff optim-ization and can be implemented with MESQUITE [44]MAC parsimony requires a step matrix (figure 2) Incontrast to DIVA MAC parsimony assigns equal costto all gains and losses of an area whether through dis-persal local extinction or vicariance An advantage ofthis approach is that it should be less prone than DIVAto reconstructing ancestral areas that are too broadrelative to terminal taxa

Another recent approach that builds on earlier cla-distic biogeography methods is phylogenetic analysisof comparing trees (PACT) [45ndash47] Unlike earlier

Phil Trans R Soc B (2011)

cladistic biogeography methods PACT explicitlyincorporates molecular dates into general areacladograms

5 ANCESTRAL AREA CHRONOGRAMS ANDPALAEOGEOGRAPHYAncestral area chronograms are similar to ancestral areacladograms but additionally incorporate temporal infor-mation into their framework Alternate approaches forreconstructing phylogeny estimating divergence timesand reconstructing ancestral areas may yield differentancestral area chronograms each of which may beinterpreted in the context of geology-based palaeogeogra-phical hypotheses (figure 1) Ancestral area chronogramsin conjunction with geology-based palaeogeographicalreconstructions provide a framework for proposingtesting and refining palaeobiogeographic hypothesesAncestral area chronograms when interpreted in thecontext of palaeogeographical hypothesis yield insightsinto dispersal vicariance and area extinctions all ofwhich are incorporated into palaeobiogeographichypotheses (figure 1)

Ancestral area chronograms are taxon-specific butancestral area chronograms for multiple taxa that co-occur in the same region can yield general area chron-ograms General area chronograms are similar togeneral area cladograms but include temporal infor-mation that is absent from general area cladogramsThe fundamental idea behind cladistic biogeographyis that broad patterns which are revealed through gen-eral area cladograms demand comprehensive causalexplanations However general area cladograms

2482 M S Springer et al Mammalian historical biogeography

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ignore temporal information and may result frompseudo-congruence when taxonomic groups with thesame area relationships have different divergencetimes and presumably different underlying causes[48] Temporal information is critical for discriminat-ing between groups that diversified during the sametime period and therefore may have experienced thesame causal events and groups that diversifiedduring different time periods and require differentcausal explanations [48]

Just as there may be multiple ancestral area chro-nograms for a taxonomic group there may also bemultiple palaeogeographical hypotheses regarding thehistory of connections of formerly connected land-masses For example the lsquopan-Gondwananrsquo andlsquoAfrica-firstrsquo hypotheses represent alternate scenariosfor the breakup of Gondwana [49] Both hypothesesagree that the initial rift was between the African com-ponent of West Gondwana (Africa South America)and the Indo-Madagascar component of EastGondwana although connections between Africa andIndo-Madagascar were maintained via South Amer-icandashAntarctica Subsequent to this initial rift the pan-Gondwanan hypothesis [50] postulates that three vicar-iant separations South America from Africa SouthAmerica from Antarctica and Antarctica from Indo-Madagascar all occurred during a narrow timewindow (100ndash90 Ma) The Africa-first hypothesis inturn suggests that Africa was the first Gondwanan con-tinent to become completely separated from otherGondwanan landmasses when it separated fromSouth America by approximately 100 Ma Indo-Mada-gascar separated from AntarcticandashAustralia atapproximately 130ndash110 Ma but maintained subaerialconnections with Antarctica via the Kerguelen Plateauand possibly the Gunnerus Ridge to the west well intothe Late Cretaceous (approx 80 Ma) The final separ-ation was between the Antarctica Peninsula and the tipof South America in the Eocene

Krause et al [49] compared Cretaceous vertebratefaunas from different Gondwanan landmasses and con-cluded that palaeontological data are most compatiblewith a modified version of the Africa-first hypothesisKrause et alrsquos [49] work also illustrates how biogeographichypotheses based on fossils can be compared withgeology-based palaeogeographical hypotheses in anarena that allows for reciprocal illumination Thus ances-tral and general area chronograms provide a frameworkfor evaluating competing geology-based palaeogeo-graphical reconstructions just as geology-basedpalaeogeographical reconstructions provide a frameworkfor evaluating alternate ancestral area chronograms(figure 1) Krause et al [49] noted that there is no apriori reason to assume that geological data trumppalaeontological data or vice versa insofar as each typeof data can be used to reveal large-scale biogeographicpatterns

6 PLACENTAL PHYLOGENY AND ACOMPARISON OF DIFFERENT ANCESTRALAREA RECONSTRUCTION METHODSMost placental orders have first fossil occurrences andprobable origins in Laurasia but there are also orders

Phil Trans R Soc B (2011)

with Gondwanan origins based on first fossil occur-rences in South America (Xenarthra) or Africa (mostafrotherian orders) Traditional morphologicalphylogenies [5152] have suggested close relationshipsbetween Laurasian and Gondwanan orders egEdentata (Xenarthra (Gondwanan) thorn Pholidota(Laurasian)) By contrast molecular phylogenies haverecovered three superordinal groups AfrotheriaLaurasiatheria and Euarchontoglires [353ndash63] thatwere not recovered on morphological trees Thesethree groups plus Xenarthra comprise the four majorclades of placental mammals There is also robust mol-ecular support for Boreoeutheria (EuarchontogliresthornLaurasiatheria) [60ndash6264] This overhaul of placentalphylogeny in conjunction with the results of moleculardating analyses laid the foundation for newbiogeographic hypotheses We discuss these in sect7 afterfirst comparing the results of different ancestralarea reconstruction methods in the remainder ofthis section

Ancestral area chronograms were reconstructed for43 fully terrestrial placental taxa from Springer et al[3] Chiropterans and fully aquatic forms wereexcluded because of their different modes of dispersal(ie flight swimming) and also because most fullyaquatic taxa inhabit areas (ie oceans) that are notcontained in the four-area scheme used in our analyses(see below) Ancestral area chronograms were recon-structed using a ML phylogram obtained withRAXML [65] molecular divergence dates estimatedwith BEAST [6] and ancestral areas reconstructedwith a variety of methods

Four areas (Africa Eurasia North America andSouth America) were recognized and two methodswere used to code areas for terminal taxa Firstareas were coded based on the geographical ranges ofextant species Second areas were coded based onthe geographical provenance of the oldest fossil foreach lineage The step matrix that was used in MACparsimony analysis is shown in figure 2 Given thatthe number of character states that are chosen for geo-graphical range subdivision is arbitrary it may beinstructive to compare the results of analyses withcoarser (eg Gondwana versus Laurasia) and finer(eg Europe and Asia instead of Eurasia) scales forarea coding although the analyses reported here areconfined to the four areas listed above

We reconstructed ancestral areas using ninemethods (i) MAC parsimony (ii) Fitch parsimonywith multiple binary characters (FP-MBC) (iii) Fitchparsimony with a single multi-state character (FP-SMC) (iv) DIVA with no constraints on the maximumnumber of areas per node (v) DIVA with a maximumof two areas per node (DIVA-2) (vi) DEC with no con-straints on the maximum number of areas per node(vii) DEC with a maximum of two areas per node(DEC-2) (viii) stochastic mapping with multiplebinary characters (SM-MBC) and (ix) stochastic map-ping with a single multi-state character (SM-SMC)Ancestral area chronograms (MAC parsimony) basedon the geographical ranges of extant species and fossillineages are shown in figures 3 and 4 respectivelyTables 3 and 4 summarize the results of analyses withall nine methods

0204060

NeogeneQuaternary

CenozoicPaleogene

Ma

Upper Miocene PP

80

Paleoc

100

OligEoceneCretaceousMesozoic

Choloepus

Tamandua

MyrmecophagaEuphractus

Chaetophractus

Erinaceus

Talpa

Sorex

Echinops

Amblysomus

Procavia

Loxodonta

MacroscelidesElephantulus

Orycteropus

Tamias

Muscardinus

Mus

Rattus

PedetesHystrix

Castor

Dipodomys

CaviaHydrochaeris

Erethizon

SylvilagusOchotona

Cynocephalus

TupaiaLemur

Homo

Tarsius

Hippopotamus

Lama

Tragelaphus

Sus

Equus

Ceratotherium

TapirusFelis

Canis

Manis

Africa

South America

Eurasia

North America

Africa + EurasiaAfrica + North America

1

23

4

56

7

16

17

1819

20

2122

23

12

13

14

15

8

9

1011

31

32

33

34

35

36

3738

28

2930

2425

26

27

4239

41

40

Figure 3 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on extant ranges forterminal taxa RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times MAC parsi-mony was used to infer ancestral areas with the step matrix in figure 2 We employed soft constraints (nodes 3 8 10 16 19

21 32 34 36 38 41) that followed a normal distribution with 95 of the normal distribution between the specified mini-mum and maximum constraints (table 1) Areas for extant taxa are enumerated in table 2 and are colour-coded as followsAfrica blue Eurasia green North America brown South America red Multi-coloured names denote taxa that occur inmore than one area (table 2) Nodes with unambiguous ancestral area reconstructions are shown with a single colouredcircle nodes with ambiguous reconstructions are shown with two or more circles and each coloured circle corresponds to

a different reconstruction

Mammalian historical biogeography M S Springer et al 2483

Phil Trans R Soc B (2011)

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Table 1 Fossil constraints Minimum ages are based on the age of the oldest unequivocal fossils belonging to the clade

Maximum ages are based on the maximum of stratigraphic bounding [66] phylogenetic bracketing [6768] and phylogeneticuncertainty Stratigraphic bounding encompassed two successive underlying fossil-bearing deposits that did not contain anyfossils from the lineage of interest phylogenetic bracketing encompassed the age of the oldest fossils that were up to twonodes below the divergence event and phylogenetic bracketing allowed for the possibility that taxa of uncertain phylogeneticaffinities belong to the crown clade first outgroup or second outgroup Dates used in stratigraphic bounding are from

Gradstein et al [69] We recognized the following chronological units in succession from youngest to oldest PleistocenePliocene Late Miocene Middle Miocene Early Miocene Late Oligocene Early Oligocene Late Eocene Middle EoceneEarly Eocene Late Palaeocene Middle Palaeocene Early Palaeocene Maastrichtian and Campanian

node numbera

fossil constraints (Ma)

oldest fossil for minimum reference(s)minimum maximum

3 556 712 Eritherium [70]8 585 712 Riostegotherium [6671]

10 338 655 Antarctic specimenb [7273]16 611 842 Adunator [74]19 371 658 Hesperocyon gregarious [75ndash77]21 555 611 Hyracotherium [78]

32 484 611 leporid tarsals [79]34 484 611 Eogliravus [80]36 338 56 Gaudeamus [8182]38 118 34 Prodolichotis [83]41 524 611 Mattimys [84]

aNode numbers refer to figures 3 and 4bThe Eocene Antarctic specimen is an ungual phalanx that Carlini et al [72] identified as a megatheroid sloth Marenssi et al [85] revisedthe identification of the phalanx to include either Tardigrada (sloths) or Vermilingua (anteaters) Subsequently Vizcaıno amp Scillato-Yane[73] described a fragmentary tooth from the Eocene of Antarctica and referred this tooth to Tardigrada but MacPhee amp Reguero [86]reinterpreted this tooth fragment as Mammalia incertae sedis based on histological evidence

2484 M S Springer et al Mammalian historical biogeography

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Ambiguous ancestral area reconstructions were aproblem for all methods and the number of nodeswith equivocal reconstructions ranged from four(SM-SMC with extant coding) to 26 (DEC-2 withextant coding) For some methods the number ofambiguous nodes was higher with extant coding thanwith fossil coding (FP-MBC FP-SMC MAC parsi-mony DIVA DIVA-2 DEC DEC-2) but in othercases this pattern was reversed (SM-MBC SM-SMC) Ancestral areas for Placentalia Exafroplacenta-lia (frac14Boreoeutheria thorn Xenarthra) and several nodeswithin Rodentia were reconstructed as ambiguous bynearly all methods Other nodes were consistentlyreconstructed with unambiguous ancestral areasincluding clades with ancestral areas in Africa(Afrotheria and its internal nodes) Eurasia (Euarch-onta Paraprimates [frac14Dermoptera thorn Scandentia]Muridae) North America (Erinaceidae thorn Soricidae)and South America (Xenarthra and its internalnodes Cavioidea) Most analyses reconstructedEurasia as the ancestral area for BoreoeutheriaLaurasiatheria and Euarchontoglires This finding isdiscussed below

The importance of fossils is illustrated by recon-structions for Lagomorpha (tables 3 and 4) Allmethods returned North America as the ancestralarea when extant taxa were used for area coding butidentified Eurasia with fossil coding

DIVA and DEC analyses reconstructed more nodeswith multiple areas than did the other methodsAnalyses with DEC reconstructed 17ndash20 nodes withtwo or more areas and four to six nodes with threeor more areas DIVA analyses resulted in 15ndash18

Phil Trans R Soc B (2011)

nodes with at least two areas and five to six nodeswith three or more areas None of the other methodsreconstructed ancestral nodes to include three ormore areas in a single reconstruction although threeor four areas were sometimes represented by thefull complement of alternate reconstructions for agiven node

FP-MBC returned nine empty nodes with extantcoding and five empty areas with fossil coding SM-MBC with extant coding resulted in three or fourempty nodes with extant coding and four emptynodes with extinct coding (table 5)

7 PLACENTAL BIOGEOGRAPHYAfrotheria (Afrosoricida Hyracoidea MacroscelideaProboscidea Sirenia Tubulidentata) was the first ofthe new superordinal groups to receive robust molecu-lar support [535556] With the exception of Sireniaall afrotherian orders have first fossil occurrences inAfrica and two orders (Macroscelidea Afrosoricida)have evolutionary histories that are restricted to theAfro-Malagasy region Springer et al [53] suggestedthat interordinal separation of afrotherian orders com-menced during a window of isolation that began in theCretaceous after Africa separated from South Amer-ica and lasted until the early Cenozoic when Africadocked with Europe Consistent with this scenarioAfrica was unambiguously reconstructed as the ances-tral area for Afrotheria (figures 3 and 4) Thishypothesis contrasts with traditional views whereinthe African mammal fauna arrived from the northincluding a condylarth stock that arrived in Africa

Table 2 Geographical area of extant taxa and oldest fossils used in ancestral area reconstruction

taxona area of extant species area of oldest fossilb

Choloepus didactylus SA SA Megalonychidae Miocene [87]Tamandua tetradactyla SA SA Tamandua Pleistocene [87]

Myrmecophaga tridactyla SA SA Neotamandua Miocene [8788]Euphractus sexcinctus SA SA Zaedyus Pliocene [8789]Chaetophractus villosus SA SA Chaetophractus Pliocene [90]Erinaceus europaeus Eurasia NA Adunator Palaeocene [74]Talpa altaica Eurasia Eurasia Eotalpa Eocene [91]

Sorex araneus Eurasia NA Domnina Eocene [92]Echinops telfairi Africa Africa Widanelfarasia Eocene [93]Amblysomus hottentotus Africa Africa Eochrysochloris Oligocene [93]Procavia capensis Africa Africa Seggeurius Eocene [94]

Loxodonta africana Africa Africa Eritherium Palaeocene [70]Macroscelides proboscideus Africa Africa Macroscelides Pliocene [95]Elephantulus rufescens Africa Africa Elephantulus Pliocene [95]Orycteropus afer Africa Africa Orycteropus Miocene [96]Tamias striatus NA NA Spurimus Eocene [97]

Muscardinus avellanarius Eurasia Eurasia Eogliravus Eocene [80]Mus musculus Eurasia Eurasia Progonomys Miocene [74]Rattus norvegicus Eurasia Eurasia Karnimata Miocene [74]Pedetes capensis Africa Africa Pondaungimys Eocene [98]Hystrix brachyurus Eurasia Africa Gaudeamus Eocene [81]

Castor canadensis NA NA Mattimys Eocene [84]Dipodomys merriami NA NA Proheteromys Oligocene [99]Cavia porcellus SA SA Prodolichotis Miocene [83100]Hydrochaeris hydrochaeris SA SA Cardiatherium Miocene [101]Erethizon dorsatum NA SA Eopululo Eocene [102]

Sylvilagus floridanus NA SA Eurasia tarsal elements Eocene [79]Ochotona princeps NA Eurasia Sinolagomys Oligocene [103104]Cynocephalus variegatus Eurasia Eurasia Dermotherium Eocene [105]Tupaia minor Eurasia Eurasia Eodendrogale Eocene [106]Lemur catta Africa Africa Pachylemur Quaternary [107]

Homo sapiens Eurasia NA SA Africa Eurasia Anthrasimias Palaeocene [108]Tarsius syrichta Eurasia Eurasia Tarsius Eocene [109]Hippopotamus amphibius Africa Africa Morotochoerus Miocene [110]Lama glama SA NA Poebrodon Eocene [111]

Tragelaphus eurycerus Africa Eurasia Archaeomeryx Eocene [112]Sus scrofa Eurasia Africa Eurasia Eocenchoerus Eocene [113]Equus caballus Eurasia Eurasia NA Hyracotherium Eocene [78114115]Ceratotherium simum Africa NA Hyracodontidae Eocene [116]Tapirus indicus Eurasia NA Helaletes Eocene [117]

Felis catus Africa Eurasia Stenoplesictis Eocene [118119]Canis familiaris Eurasia NA Hesperocyon Eocene [120]Manis pentadactyla Eurasia Eurasia Eomanis Eocene [121]

aIn cases of chimeric taxa we used the most common species from Springer et alrsquos [3] concatenated supermatrix NA North AmericaSA South AmericabArea of the oldest stem fossil belonging to the terminal branch represented by each living taxon

Mammalian historical biogeography M S Springer et al 2485

on October 29 2012rstbroyalsocietypublishingorgDownloaded from

from Europe in the early Cenozoic and insectivoresthat arrived in the Neogene [124]

Asher et al [125] Zack et al [126] and Tabuce et al[127] suggested that the geographical distributions ofliving afrotherians are not representative of the histori-cal geographical distribution of this clade and thatAfrotheria is Holarctic in origin based on the place-ment of extinct taxa from the Palaeocene of Laurasiawithin or at the base of Afrotheria However pseu-doextinction tests call into question the reliability ofthe placement of fossil taxa in morphological cladisticanalyses [3]

The oldest xenarthran fossils are scutes from thePalaeocene of South America [71] Living membersof Xenarthra (anteaters sloths armadillos) are

Phil Trans R Soc B (2011)

restricted to South and Central America with theexception of the nine-banded armadillo whose ances-tors dispersed to North America during the GreatAmerican Interchange [128] Simpson [129130] sup-ported the view that South American xenarthransevolved in situ during South Americarsquos isolation fromother continents in the early Tertiary All of our ana-lyses are consistent with the hypothesis that SouthAmerica was the ancestral area for Xenarthra (figures3 and 4)

The remaining placental orders are placed in Laur-asiatheria (Eulipotyphla Chiroptera PerissodactylaCetartiodactyla Carnivora Pholidota) and Euarchon-toglires (Primates Dermoptera Scandentia RodentiaLagomorpha) With the exception of bats these orders

0204060

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Figure 4 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on the oldest fossil foreach lineage RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times and MAC par-simony was used to infer ancestral areas with the step matrix in figure 2 Areas for the oldest fossil lineage are enumerated intable 2 and are colour-coded as follows Africa blue Eurasia green North America brown South America red Nodes with

unambiguous ancestral area reconstructions are shown with a single coloured circle nodes with ambiguous reconstructions areshown with two or more circles and each coloured circle corresponds to a different reconstruction

2486 M S Springer et al Mammalian historical biogeography

on October 29 2012rstbroyalsocietypublishingorgDownloaded from

have first fossil occurrences that are exclusively Laura-sian Our reconstructions provide support for Eurasiabut not North America as the ancestral area for theseclades (figures 3 and 4) These results are consistent

Phil Trans R Soc B (2011)

with previous suggestions that Cretaceous zhelestidsand zamlambdalestids from Asia are members ofcrown Placentalia [131132] Further the fossilrecord suggests that Eutheria were dominant in

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Mammalian historical biogeography M S Springer et al 2487

Phil Trans R Soc B (2011)

on October 29 2012rstbroyalsocietypublishingorgDownloaded from

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2490 M S Springer et al Mammalian historical biogeography

Phil Trans R Soc B (2011)

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Table 5 Comparison of different methods for reconstructing ancestral areas NA1 not applicable for monomorphic

reconstruction methods NA2 not applicable when the maximum number of areas is set at two NA2 not applicable formethods that employ single multistate charactersa

FP-MBC FP-SMCMACParsimony DIVA DIVA-2 DEC DEC-2 SM-MBC SM-SMC

nodes with ambiguous 75 129 128 1211 107 2323 2623 1617 614reconstructionsb 1920 1718 1012 410

nodes with 2 areasc 33 NA1 46 1618 1516 1820 2019 77 NA11720 1717 46

nodes with 3 areasd 00 NA1 00 65 NA2 66 NA2 00 NA145 00

empty nodese 95 NA3 NA3 NA3 NA3 NA3 NA3 34 NA344

aNumbers before slashes are based on analyses with area coding for extant taxa and numbers after slashes are based on analyses with areacoding for the oldest fossil See table 3 for abbreviationsbFor FP-MBC nodes were considered ambiguous if at least one area was reconstructed as (01) For SM-MBC and SM-SMC nodes wereconsidered ambiguous if the posterior probability (PP) of at least one area was 01 PP 09 (top line) or 02 PP 08 (bottom line)For DEC and DEC-2 nodes were considered ambiguous if the frequency ( f ) of at least one area was 01 f 09 (top line) or 02 p 08 (bottom line)cAt least two areas in at least one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) was takento include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line) or020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02 (bottomline)dAt least three areas in more than one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) wastaken to include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line)or 020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02(bottom line)eFor FP-MBC nodes were considered empty if all areas were reconstructed as 0 For SM-MBC nodes were considered empty if posteriorprobabilities were 010 (top line) or 020 (bottom line) for all four areas

Mammalian historical biogeography M S Springer et al 2491

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Eurasia throughout the Cretaceous but were absentfrom North America through much of the Late Cre-taceous and only attained appreciable diversity thereduring the last approximately 10 Myr of the period[133134] Boyer et al [135] concluded that theIndian subcontinent Eurasia and Africa are morelikely places of origin for Euarchonta than is NorthAmerica This agrees with our ancestral areareconstructions (figures 3 4 and tables 3 4)

Although there is robust support for the monophylyof Xenarthra Afrotheria and Boreoeutheria relation-ships among these three groups and the root of theplacental tree remain contentious [105460ndash63136]Murphy et al [62] and Springer et al [10] suggested acausal relationship between the sundering of Africa andSouth America and basal cladogenesis among crown-group placental mammals given the coincidence ofmolecular dates for the base of placentals and thevicariant separation of Africa and South Americaapproximately 100ndash120 Ma

Asher et al [125] analysed a combined matrix andrecovered Afrotheria in a nested position within Pla-centalia which contradicts the hypothesis that theplate tectonic separation of Africa and South Americaplayed a causal role in the early cladogenesis of placen-tal mammals However the nested position forAfrotheria resulted from the paraphyly of Euarchonto-glires Glires and Rodentia Rare genomic changesconfirm the monophyly of Xenarthra [137] Afrotheria[138ndash142] Euarchontoglires [139141142] Laura-siatheria [139141142] and Boreoeutheria[139141142] and preclude a nested position forAfrotheria in the placental tree

Rare genomic changes have also been used toexamine the position of the placental root Kriegs

Phil Trans R Soc B (2011)

et al [139] reported LINE insertions that are sharedby Epitheria whereas Murphy et al [16] discoveredrare genomic changes that support AtlantogenataNishihara et al [142] performed genome-wide retro-poson analyses and found 22 25 and 21 LINEinsertions for Exafroplacentalia Epitheria and Atlan-togenata respectively Based on these resultsNishihara et al [142] concluded that XenarthraAfrotheria and Boreoeutheria diverged from oneanother nearly simultaneously They also suggested anew palaeogeographical model for the breakup of Pan-gaea and Gondwana in which Africa becomes isolatedfrom both South America and Laurasia at approxi-mately 120 Ma and argued that these coeval platetectonic events provide an explanation for the simul-taneous divergence of Afrotheria Xenarthra andBoreoeutheria However relaxed clock dates for thebase of Placentalia are closer to 100 Ma than to120 Ma (figures 3 and 4) A second difficulty concernsthe opening of the South Atlantic Nishihara et al[142] suggested that the Brazilian Bridge which rep-resented the last connection between Africa andSouth America was severed at approximately120 Mya but other recent reconstructions suggestthat the connection between the South Atlantic andCentral Atlantic was not established until lateAptianmid-Albian times (approx 110ndash100 Ma)[143144]

8 THE IMPORTANCE OF DISPERSALIn the context of pre-plate tectonic views of theEarth Simpson [2] proposed three types ofmigration routes to describe the movement of ani-mals corridors filter bridges and sweepstakes

Africa

Mad

agas

car

Tanzania

Mozambique

N

100 mi

Figure 5 Present day surface ocean currents in the Mozam-bique Channel (solid arrows) are southndashsouthwest andwould not have facilitated west to east transoceanic dispersalfrom Africa to Madagascar [153] By contrast westerly sur-face ocean currents in the Eocene (dashed arrows) would

have facilitated dispersal across the Mozambique Channelfrom Africa to Madagascar especially during tropicalstorms [154] The outline of Madagascar with dashed linesshows its approximate position relative to Africa during theEocene

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dispersal Corridors connect two areas and are per-meable to all animals filter bridges impose selectivebarriers that affect some but not all animals andsweepstakes dispersal is required when there arestrong barriers to migration such as high mountainbarriers or oceans

Simpson [2] suggested that Madagascarrsquos livingmammals were the product of sweepstakes dispersalfrom Africa to Madagascar Sweepstakes dispersalhypotheses fell out of favour with the validation ofplate tectonic theory and were summarily dismissedas lsquomiraculousrsquo hypotheses with no scientific basis[145] However it has become apparent that some dis-tributional patterns can only be explained bysweepstakes dispersal [146] Observational data alsoprovide support for long-distance vertebrate dispersal[147] Examples of low probability sweepstakes disper-sal involving mammals include the origins of theendemic mammal fauna in Madagascar and theoccurrence of caviomorph rodents and platyrrhine pri-mates in South America

Madagascarrsquos strictly terrestrial extant mammal faunaincludes endemic lineages from four placental orderstenrecs (Afrosoricida) euplerids (Carnivora) neso-myines (Rodentia) and lemurs (Primates) In eachlineage Madagascar endemics comprise monophyleticassemblages with closest living relatives in Africa[148149] Madagascar separated from Africa approxi-mately 165 Ma but maintained its connection withAntarctica via the Kerguelen Plateau until as late as80 Ma at which time it became permanentlyseparated from other Gondwanan landmasses This his-tory suggests that Madagascarrsquos terrestrial endemicmammals are either the ancient descendants of vicariantevents that occurred prior to 80 Ma or reached Mada-gascar via transoceanic sweepstakes dispersal at a latertime Another possibility is that a land bridge connectedAfrica and Madagascar between 45 and 26 Ma [150]

Molecular divergence dates suggest that all fourendemic lineages last shared a common ancestorwith their African sister group in the Cenozoic[148149151152] Poux et al [148] concluded thatdispersal by lemurs rodents and carnivorans musthave occurred by transoceanic dispersal rather thanland bridge dispersal based on molecular dates forthe colonization of Madagascar that were outside ofthe land bridge window ie 60ndash50 Ma for lemurs26ndash19 Ma for carnivorans and 24ndash20 Ma for rodentsHowever present ocean currents allow for dispersalfrom Madagascar to Africa but oppose reciprocal dis-persal from Africa to Madagascar across theMozambique Channel If ocean currents were thesame for most of the Cenozoic as they are todaythey would not have facilitated west to east transocea-nic dispersal across the Mozambique Channel becauseof the strong southndashsouthwest flow of the Mozambi-que Current [153]

Ali amp Huber [154] addressed this problem by simu-lating surface ocean currents in the Indian Oceanduring the Eocene They concluded that large-scaleocean current systems in the Eocene were profoundlydifferent from modern observed circulatory patternsand that the flow along the African coast was eastwardtowards Madagascar instead of southward through the

Phil Trans R Soc B (2011)

Mozambique Channel (figure 5) Ali amp Huber [154]further suggested that dispersal probabilities wereenhanced by tropical storms that (i) generated largefloating tree islands that would have allowed for asuccessful oceanic voyage and (ii) acceleratedtransportation rates from Africa to Madagascar thatwould have allowed for complete crossing of theMozambique Channel in 25ndash30 days

The dispersal of four groups of fully terrestrialmammals from Africa to Madagascar at a time whenthere was no land bridge is a testament to the impor-tance of rare sweepstakes events in the evolutionaryhistory of Placentalia Even more remarkable is theoccurrence of two different groups of placental mam-mals hystricognath rodents and anthropoid primatesin Africa and South America

Hystricognathi includes Hystricidae (Old World por-cupines) and Phiomorpha (eg cane rats dassie rats)from the Old World and Caviomorpha (eg porcupineschinchillas) from the New World The oldest hystricog-naths are from the late Eocene Egypt and have beendated at approximately 37 Ma [81] Old World hystri-cognaths are paraphyletic usually with phiomorphshaving closer phylogenetic affinities to South Americancaviomorphs than to hystricids [14155156] Relaxedclock dates suggest that South American caviomorphslast shared a common ancestor with phiomorphsbetween 45 and 36 Ma [81155157] The most recentcommon ancestor of Caviomorpha has been dated at45ndash31 Ma [81155157158]

PacificOcean

NorthAtlanticOcean

SouthAtlantic Ocean

IndianOcean

NorthAmerica

SouthAmerica

Africa

Antarctica

Australia

Asia

Europe

PacificOcean1b

1b

1a3

2

Middle Eocene

Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

Mammalian historical biogeography M S Springer et al 2493

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Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

Phil Trans R Soc B (2011)

phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

node number (figure 7) Eick et al [12] re-analysis

1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

14 A A B C AC BC ABC15 A A B C AC BC

16 A A B C17 A A B AC BC ABC

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and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

Phil Trans R Soc B (2011)

Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

1

2

3

4

56

7

8

9

10

11

1213

14

1516

17

EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

Mammalian historical biogeography M S Springer et al 2495

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with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

Phil Trans R Soc B (2011)

sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

2496 M S Springer et al Mammalian historical biogeography

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together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

REFERENCES1 Jones K E amp Safi K 2011 Ecology and evolution of

mammalian biodiversity Phil Trans R Soc B 366

2451ndash2461 (doi101098rstb20110090)2 Simpson G G 1940 Mammals and land bridges

J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

4 Springer M S Meredith R W Eizirik E Teeling

E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

5 Bollback J P 2006 SIMMAP stochastic charactermapping of discrete traits on phylogenies BMC Bioin-form 7 88 (doi1011861471-2105-7-88)

6 Drummond A J Ho S Y W Phillips M J amp Ram-baut A 2006 Relaxed phylogenetics and dating withconfidence PLoS Biol 4 e88 (doi101371journalpbio0040088)

7 Zuckerkandl E amp Pauling L 1962 Molecular diseaseevolution and genetic heterogeneity In Horizons in bio-chemistry (eds M Kasha amp B Pullman) pp 189ndash225New York NY Academic Press

8 Douady C J amp Douzery E J P 2003 Molecular esti-mation of eulipotyphlan divergence times and theevolution of lsquoInsectivorarsquo Mol Phylogenet Evol 28285ndash296 (doi101016S1055-7903(03)00119-2)

9 Douady C J Catzeflis F Raman J Springer M S

amp Stanhope M J 2003 Molecular evidence for theSahara as a vicariant agent and the role of Miocene cli-matic events in the diversification of the mammalianorder Macroscelidea (elephant shrews) Proc NatlAcad Sci USA 100 8325ndash8330 (doi101073pnas

0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

S J 2003 Placental mammal diversification and theCretaceousndashTertiary boundary Proc Natl Acad SciUSA 100 1056ndash1061 (doi101073pnas0334222

100)11 Delsuc F Vizcaıno S F amp Douzery E J P 2004

Influence of Tertiary paleoenvironmental changes onthe diversification of South American mammals a

relaxed molecular clock study within xenarthransBMC Evol Biol 4 11 (doi1011861471-2148-4-11)

Phil Trans R Soc B (2011)

12 Eick G N Jacobs D S amp Matthee C A 2005 Anuclear DNA phylogenetic perspective on the evolutionof echolocation and historical biogeography of extant

bats (Chiroptera) Mol Biol Evol 22 1869ndash1886(doi101093molbevmsi180)

13 Teeling E C Springer M S Madsen O Bates POrsquoBrien S J amp Murphy W J 2005 A molecular phy-logeny for bats illuminates biogeography and the fossil

record Science 307 580ndash584 (doi101126science1105113)

14 Huchon D Chevret P Jordan U Kilpatrick C WRanwez V Jenkins P D Brosius J amp Schmitz J

2007 Multiple molecular evidences for a living mamma-lian fossil Proc Natl Acad Sci USA 104 7495ndash7499(doi101073pnas0701289104)

15 Janecka J E Miller W Pringle T H Wiens FZitzmann A Helgen K M Springer M S amp

Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

the root of the placental mammal tree Genome Res 17413ndash421 (doi101101gr5918807)

17 Beck R M 2008 A dated phylogeny of marsupialsusing a molecular supermatrix and multiple fossil con-straints J Mammal 89 175ndash189 (doi10164406-

MAMM-A-4371)18 Meredith R W Westerman M amp Springer M S

2008 A timescale and phylogeny for lsquobandicootsrsquo (Pera-melemorphia Marsupialia) based on sequences for five

nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

19 Meredith R W Westerman M amp Springer M S2008 Phylogeny and timescale for the living genera ofkangaroos and kin (Macropodiformes Marsupialia)

based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

20 Meredith R W Westerman M amp Springer M S 2009A phylogeny of Diprotodontia (Marsupialia) based onsequences for five nuclear genes Mol Phylogenet Evol51 554ndash571 (doi101016jympev200902009)

21 Meredith R W Krajewski C Westerman W ampSpringer M S 2009 Relationships and divergencetimes among the orders and families of marsupialsMus N Ariz Bull 65 383ndash406

22 Chatterjee H J Ho S W Y Barnes I amp Groves C2009 Estimating the phylogeny and divergence times ofprimates using a supermatrix approach BMC EvolBiol 9 259 (doi1011861471-2148-9-259)

23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

(doi101016jympev201001033)24 Sanderson M J 1997 A nonparametric approach to

estimating divergence times in the absence of rate con-stancy Mol Biol Evol 14 1218ndash1231

25 Sanderson M J 2002 Estimating absolute rates of mol-

ecular evolution and divergence times a penalizedlikelihood approach Mol Biol Evol 19 101ndash109

26 Thorne J L amp Kishino H 2002 Divergence time andevolutionary rate estimation with multilocus data SystBiol 51 689ndash702 (doi10108010635150290102456)

27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

Mammalian historical biogeography M S Springer et al 2497

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28 Battistuzzi F U Filipski A Hedges S B amp KumarS 2010 Performance of relaxed-clock methods in esti-mating evolutionary divergence times and their

credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

29 Brown R P amp Yang Z 2010 Bayesian dating of shal-low phylogenies with a relaxed molecular clock SystBiol 59 119ndash131 (doi101093sysbiosyp082)

30 Inoue J Donoghue P C J amp Yang Z 2010 Theimpact of the representation of fossil calibrations onBayesian estimation of species divergence times SystBiol 59 74ndash89 (doi101093sysbiosyp078)

31 Morrone J J amp Crisci J V 1995 Historical biogeogra-phy introduction to methods Annu Rev Ecol Syst 26373ndash401 (doi101146annureves26110195002105)

32 Simpson G G 1965 The geography of evolution collectedessays PhiladelphiaNew York PANY Chilton Books

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34 Wen J Xiang Q-Y Qian H Li J Want X-W amp

Ickert-Bond S M Intercontinental and intracontinen-tal biogeographymdashpatterns and methods J Syst Evol4 327ndash329

35 Nylander J A A Olsson U Alstrom P amp Sanmar-tın I 2008 Accounting for phylogenetic uncertainty

in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

36 Ree R H Moore B R Webb C O amp Donoghue

M J 2005 A likelihood framework for inferring theevolution of geographic range on phylogenetic treesEvolution 59 2299ndash2311

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local extinction and cladogenesis Syst Biol 57 4ndash14 (doi10108010635150701883881)

38 Hardy C R amp Linder H P 2005 Intraspecific varia-bility and timing in ancestral ecology reconstruction atest case from the Cape flora Syst Biol 54 299ndash316

(doi10108010635150590923317)39 Maddison W P amp Maddison D R 1992 MacClade

version 3 analysis of phylogeny and character evolutionSunderland MA Sinauer Associates

40 Clark J R Ree R H Alfaro M E King M G

Wagner W L amp Roalson E H 2008 A comparativestudy in ancestral range reconstruction methodsretracing the uncertain histories of insular lineagesSyst Biol 57 693ndash707 (doi101080106351508

02426473)41 Patterson C 1982 Morphological characters and hom-

ology In Problems of phylogenetic reconstruction (eds K AJoysey amp A E Friday) pp 21ndash74 London UK Aca-demic Press

42 Ree R H amp Sanmartın I 2009 Prospects and chal-lenges for parametric models in historicalbiogeographical inference J Biogeogr 36 1211ndash1220(doi101111j1365-2699200802068x)

43 Lamm K S amp Redelings B D 2009 Reconstructing

ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

44 Maddison W P amp Maddison D R 2009 Mesquite amodular system for evolutionary analysis version 272See httpmesquiteprojectorg

45 Wojcicki M amp Brooks D R 2005 PACT an efficientand powerful algorithm for generating area cladogramsJ Biogeogr 32 755ndash774 (doi101111j1365-2699200401148x)

Phil Trans R Soc B (2011)

46 Lim B K 2008 Historical biogeography of New Worldemballonurid bats (Tribe Diclidurini) taxon pulsediversification J Biogeogr 35 1385ndash1401 (doi10

1111j1365-2699200801888x)47 Lim B K 2009 Review of the origins and biogeogra-

phy of bats in South America Chiroptera Neotropical15 391ndash410

48 Donoghue M J amp Moore B R 2003 Toward an inte-

grative historical biogeography J Int Comp Biol 43261ndash270 (doi101093icb432261)

49 Krause D W OrsquoConnor P M Rogers K C Samp-son S D Buckley G A amp Rogers R R 2006 Late

Cretaceous terrestrial vertebrates from Madagascarimplications for Latin American biogeography AnnMo Bot Gard 93 178ndash208 (doi1034170026-6493(2006)93[178LCTVFM]20CO2)

50 Sereno P C Wilson J A amp Conrad J L 2004 New

dinosaurs link southern landmasses in the Mid-Cretac-eous Proc R Soc Lond B 271 1325ndash1330 (doi101098rspb20042692)

51 Novacek M J 1992 Mammalian phylogeny shakingthe tree Nature 356 121ndash125 (doi101038

356121a0)52 Novacek M J 1993 Reflections on higher mammalian

phylogenetics J Mamm Evol 1 1064ndash755453 Springer M S Cleven G C Madsen O de Jong

W W Waddell V G Amrine H M amp Stanhope

M J 1997 Endemic African mammals shake the phylo-genetic tree Nature 388 61ndash64 (doi10103840386)

54 Springer M S Murphy W J Eizirik E amp OrsquoBrienS J 2005 Molecular evidence for major placental

clades In The rise of placental mammals origins andrelationships of the major extant clades (eds K D Roseamp J D Archibald) pp 37ndash49 Baltimore MD JohnsHopkins University Press

55 Stanhope M J Madsen O Waddell V G Cleven

G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

56 Stanhope M J Waddell V G Madsen O de Jong

W W Hedges S B Cleven G C Kao D ampSpringer M S 1998 Molecular evidence for multipleorigins of Insectivora and for a new order of endemicAfrican insectivore mammals Proc Natl Acad SciUSA 95 9967ndash9972 (doi101073pnas95179967)

57 Waddell P Okada N amp Hasegawa M 1999 Towardsresolving the interordinal relationships of placentalmammals Syst Biol 48 1ndash5 (doi101093sysbio4811)

58 Waddell P J Kishino H amp Ota R 2001 A phyloge-netic foundation for comparative mammaliangenomics Genome Inform 12 141ndash154

59 Eizirik E Murphy W J amp OrsquoBrien S J 2001 Mol-ecular dating and biogeography of the early placental

mammal radiation J Hered 92 212ndash219 (doi101093jhered922212)

60 Madsen O et al 2001 Parallel adaptive radiations intwo major clades of placental mammals Nature 409610ndash614 (doi10103835054544)

61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

62 Murphy W J et al 2001 Resolution of the early placen-

tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

63 Scally M Madsen O Douady C J de Jong W WStanhope M J amp Springer M S 2001 Molecular

2498 M S Springer et al Mammalian historical biogeography

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evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

64 Springer M S amp de Jong W W 2001 Which mamma-lian supertree to bark up Science 291 1709ndash1711

65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

(doi101093bioinformaticsbtl446)66 Benton M J amp Donoghue P C J 2007 Paleontologi-

cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

67 Reisz R R amp Muller J 2004 Molecular timescales andthe fossil record a paleontological perspective TrendsGenet 20 237ndash241 (doi101016jtig200403007)

68 Muller J amp Reisz R R 2005 Four well-constrainedcalibration points from the vertebrate fossil record for

molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

69 Gradstein F M amp Ogg J G 2009 The geologic timescale In The timetree of life (eds S B Hedges amp SKumar) pp 26ndash34 Oxford UK Oxford University Press

70 Gheerbrant E 2009 Paleocene emergence of elephantrelatives and the rapid radiation of African ungulatesProc Natl Acad Sci USA 106 10717ndash10721(doi101073pnas0900251106)

71 Bergqvist L P Abrantes E A L amp Avilla L D S

2004 The Xenarthra (Mammalia) of Sao Jose de Ita-boraı Basin (upper Paleocene Itaboraian) Rio deJaneiro Brazil Geodiversitas 26 323ndash337

72 Carlini A A Pascual R Reguero M A Scillato-

Yane G J Tonni E P amp Vizcaıno S F 1990 Thefirst Paleogene land placental mammal from Antarcticaits paleoclimatic and paleobiogeographical bearings InAbstracts IV International Congress of Systematic and Evol-utionary Biology (eds B Cox amp J Reveal) 325 p

Baltimore MD University of Maryland73 Vizcaıno S F amp Scillato-Yane G J 1995 An Eocene

Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

74 Benton M J Donoghue P C J amp Asher R J 2009

Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

75 Flynn J J 1996 Carnivoran phylogeny and rates ofevolution morphological taxonomic and molecular

In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

76 Hunt Jr R M amp Tedford R H 1993 Phylogenetic

relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

77 Wesley-Hunt G D amp Flynn J J 2005 Phylogeny ofthe Carnivora basal relationships among the carnivora-morphans and assessment of the position oflsquoMiacoidearsquo relative to Carnivora J Syst Palaeontol 31ndash28 (doi101017S1477201904001518)

78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

Phil Trans R Soc B (2011)

80 Storch G amp Seiffert C 2007 Extraordinarily preservedspecimen of the oldest known glirid from the middleEocene of Messel (Rodentia) J Vertebr Paleontol 27

189ndash194 (doi1016710272-4634(2007)27[189EPSOTO]20CO2)

81 Sallam H M Seiffert E R Steiper M E amp SimonsE L 2009 Fossil and molecular evidence constrainscenarios for the early evolutionary and biogeographic

history of hystricognathous rodents Proc Natl AcadSci USA 106 16 722ndash16 727 (doi101073pnas0908702106)

82 Hartenberger L 1998 Description of the radiation of

the Rodentia (Mammalia) from the Late Paleocene tothe Miocene phylogenetic consequences C R AcadSci II A 326 439ndash444

83 Vucetich M G Verzi D H amp Hartenberger L 1999Review and analysis of the radiation of the South

American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

84 Flynn L J amp Jacobs L L 2008 Castoridea In Evolution oftertiary mammals of North America small mammals xenar-thrans and marine mammals (eds C M Janis G F

Gunnell amp M D Uhen) vol 2 pp 391ndash405 CambridgeUK Cambridge University Press

85 Marenssi S A Reguero M A Santillana S N ampVizcaıno S F 1994 Eocene land mammals from Sey-mour Island Antarctica paleobiogeographical

implications Antarctic Sci 6 3ndash15 (doi101017S0954102094000027)

86 MacPhee R D E amp Reguero M A 2010 Reinterpre-tation of a middle Eocene record of Tardigrada (Pilosa

Xenarthra Mammalia) from La Meseta FormationSeymour Island West Antarctica Am Mus Novit3689 1ndash21 (doi1012067031)

87 McKenna M C amp Bell S K 1997 Classification ofmammals above the species level New York NY Colum-

bia University Press88 Gaudin T J amp Branham D G 1998 The phylogeny of

the Myrmecophagidae (Mammalia Xenarthra Vermi-lingua) and relationship of Eurotamandua to theVermilingua J Mamm Evol 5 237ndash265 (doi10

1023A1020512529767)89 Galliari F C Carlini A A amp Sanchez-Villagra M R

2010 Evolution of the axial skeleton in armadillos(Mammalia Dasypodidae) Mamm Biol 75 326ndash333 (doi101016jmambio200903014)

90 Poljak S Confalonieri V Fasanella M Gabrielli Mamp Lizarralde M S 2010 Phylogeography of the arma-dillo Chaetophractus villosus (Dasypodidae Xenarthra)post-glacial range expansion from Pampas to Patagonia

(Argentina) Mol Phylogenet Evol 55 38ndash46 (doi101016jympev200912021)

91 Sige B Crochet J-Y amp Insole A 1977 Les plusvielles taupes Geobios Mem Spec 1 141ndash157(doi101016S0016-6995(77)80014-4)

92 Gunnell G F Bown T M Hutchinson J H ampBloch J I 2008 Lipotyphla In Evolution of Tertiarymammals of North America small mammals xenarthransand marine mammals vol 2 (eds C M Janis G FGunnell amp M D Uhen) pp 89ndash125 Cambridge

UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

94 Tabuce R Asher R J amp Lehmann T 2008 Afrother-ian mammals a review of current data Mammalia 722ndash14 (doi101515MAMM2008004)

Mammalian historical biogeography M S Springer et al 2499

on October 29 2012rstbroyalsocietypublishingorgDownloaded from

95 Butler P M 1995 Fossil Macroscelidea Mammal Rev25 3ndash14 (doi101111j1365-29071995tb00432x)

96 Milledge S 2003 Fossil aardvarks from the Lothagam

beds In Lothagam the dawn of humanity in EasternAfrica (eds J Leakey amp J Harris) pp 363ndash368New York NY Columbia University Press

97 Flynn L J amp Jacobs L L 2008 Aplodontia In Evol-ution of tertiary mammals of North America smallmammals xenarthrans and marine mammals vol 2(eds C M Janis G F Gunnell amp M D Uhen) pp377ndash390 Cambridge UK Cambridge UniversityPress

98 Marivaux L Ducrocq S Jaeger J-J Marandat BSudre J Chaimanee Y Tun S T Htoon W ampSoe A N 2005 New remains of Pondaungimysanomaluropsis (Rodentia Anomaluroidea) from thelatest middle Eocene Pondaung Formation of

Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

100 Antoine P-O et al 2007 The middle Miocene (Laven-

tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

(doi1016710272-4634(2007)27[683OADOTO]20CO2)

102 Frailey C D amp Campbell K E 2004 The rodents ofthe Santa Rosa Local Fauna In The Paleogene mamma-lian fauna of Santa Rosa Amazonian Peru (ed K E

Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

103 Martin T 2004 Evolution of incisor enamel micro-structure in Lagomorpha J Vertebr Paleontol 24

411ndash426 (doi1016712513)104 Lopez-Martinez N 2008 The lagomorph fossil

record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

105 Marivaux L Bocat L Chaimanee Y Jaeger J-JMarandat B Srisuk P Tafforeau P Yamee C ampWelcomme L 2006 Cynocephalid dermopterans

from the Palaeogene of South Asia (Thailand Myan-mar and Pakistan) systematic evolutionary andpalaeobiogeographic implications Zool Scripta 35395ndash420 (doi101111j1463-6409200600235x)

106 Tong Y 1988 Fossil tree shrews from the Eocene

Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

107 Godfrey L R amp Jungers W L 2002 Quaternary fossillemurs In The primate fossil record (ed W C Hartwig)pp 97ndash121 Cambridge UK Cambridge University

Press108 Bajpai S Kay R F Williams B A Das D P

Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

Phil Trans R Soc B (2011)

109 Beard K C Qi T Dawson M R Wang B amp Li C1994 A diverse new primate fauna from middle Eocenefissure-fillings in southeastern China Nature 368

604ndash609 (doi101038368604a0)110 Orliac M Boisserie J-R MacLatchy L amp Lihoreau

F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

111 Honey J G Harrison J A Prothero D R ampStevens M S 1998 Camelidae In Evolution of Tertiarymammals of North America terrestrial carnivoresungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp439ndash462 Cambridge UK Cambridge University Press

112 Metais G amp Vislobokova I 2008 Basal ruminants In

The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

113 Harris J M amp Li-Ping L 2008 Superfamily SuoideaIn The evolution of artiodactyls (eds D R Prothero amp S

E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

114 Bowen G J Clyde W C Koch P L Ting SAlroy J Tsubamoto T Wang Y amp Wang Y 2002Mammalian dispersal at the PaleoceneEocene bound-

ary Science 295 2062ndash2065 (doi101126science1068700)

115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

117 Colbert M W amp Schoch R M 1998 Tapiroidea and

other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

118 Dashzeveg D 1996 Some carnivorous mammals fromthe Paleogene of the Eastern Gobi Desert Mongoliaand the application of Oligocene carnivores to strati-graphic correlation Am Mus Novit 3179 1ndash14

119 Hunt Jr R M 1998 Evolution of the aeluroid Carni-vora diversity of the earliest aeluroids from Eurasia(Quercy Hsanda-Gol) and the origin of felids AmMus Novit 3252 1ndash65

120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

122 Huelsenbeck J P amp Ronquist F 2001 MrBAYESBayesian inference of phylogenetic trees Bioinformatics17 754ndash755 (doi101093bioinformatics178754)

123 Ronquist F amp Huelsenbeck J P 2003 MrBayes 3Bayesian phylogenetic inference under mixed modelsBioinformatics 19 1572ndash1574 (doi101093bioinfor-maticsbtg180)

2500 M S Springer et al Mammalian historical biogeography

on October 29 2012rstbroyalsocietypublishingorgDownloaded from

124 Carroll R L 1988 Vertebrate paleontology and evolutionNew York NY W H Freeman and Company

125 Asher R J Novacek M J amp Geisler J G 2003

Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

126 Zack S P Penkrot T A Bloch J I amp Rose K D

2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

127 Tabuce R Marivaux L Adaci M Bensalah M

Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

129 Simpson G G 1951 History of the fauna of Latin

America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

130 Simpson G G 1978 Early mammals in South Amer-ica fact controversy and mystery Proc Am PhilSoc 122 318ndash328

131 Archibald J D 1996 Fossil evidence for a Late Cretac-eous origin of lsquohoofedrsquo mammals Science 272 1150ndash1153 (doi101126science27252651150)

132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

133 Cifelli R L amp Davis B M 2003 Marsupial origins

Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

Phil Trans R Soc B (2011)

140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

of mammals Proc Natl Acad Sci USA 106 5235ndash5240

143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

37091305110239)150 McCall R 1997 Implications of recent geological

investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

Mammalian historical biogeography M S Springer et al 2501

on October 29 2012rstbroyalsocietypublishingorgDownloaded from

revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

158 Rowe D L Dunn K A Adkins R M amp Honeycutt

R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

159 Beard K C Wang B Dawson M Huang X amp

Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

160 Beard K C amp Wang J 2004 The eosimiid primates

(Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

161 Arnason U Gullberg A Schweizer B A amp Janke A

2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

167 Gunnell G F amp Simmons N B 2005 Fossil evidence

and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

Wyoming and the evolution of flight and echolocationNature 451 818ndash822

169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

ian evolution Science 302 1934ndash1939 (doi101126science1090718)

172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

Phil Trans R Soc B (2011)

dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

175 Cifelli R L 1993 Theria of metatherianndasheutherian

grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

177 Wible J R 1990 Late Cretaceous marsupial petrosal

bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

181 Beck R M Godthelp H Weisbecker V Archer M

amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

2502 M S Springer et al Mammalian historical biogeography

on October 29 2012rstbroyalsocietypublishingorgDownloaded from

mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

Phil Trans R Soc B (2011)

Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

191 Springer M S amp Krajewski C 2009 Monotremes

(Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

  • The historical biogeography of Mammalia
    • Introduction
    • Phylogeny reconstruction
    • Molecular dating analyses
    • Ancestral area reconstruction
    • Box 1
    • Ancestral area chronograms and palaeogeography
    • Placental phylogeny and a comparison of different ancestral area reconstruction methods
    • Placental biogeography
    • The importance of dispersal
    • Bat biogeography
    • Marsupial biogeography
    • Monotreme biogeography
    • Conclusions
    • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
    • REFERENCES

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    Phil Trans R Soc B (2011) 366 2478ndash2502

    doi101098rstb20110023

    Research

    Autho

    One conmamma

    The historical biogeography of MammaliaMark S Springer1 Robert W Meredith1 Jan E Janecka2

    and William J Murphy2

    1Department of Biology University of California Riverside CA 92521 USA2Department of Veterinary Integrative Biosciences College of Veterinary Medicine and Biomedical Sciences

    Texas AampM University College Station TX 77843 USA

    Palaeobiogeographic reconstructions are underpinned by phylogenies divergence times and ances-tral area reconstructions which together yield ancestral area chronograms that provide a basis forproposing and testing hypotheses of dispersal and vicariance Methods for area coding includemulti-state coding with a single character binary coding with multiple characters and stringcoding Ancestral reconstruction methods are divided into parsimony versus Bayesianlikelihoodapproaches We compared nine methods for reconstructing ancestral areas for placental mammalsAmbiguous reconstructions were a problem for all methods Important differences resulted fromcoding areas based on the geographical ranges of extant species versus the geographical provenanceof the oldest fossil for each lineage Africa and South America were reconstructed as the ancestralareas for Afrotheria and Xenarthra respectively Most methods reconstructed Eurasia as the ances-tral area for Boreoeutheria Euarchontoglires and Laurasiatheria The coincidence of moleculardates for the separation of Afrotheria and Xenarthra at approximately 100 Ma with the plate tec-tonic sundering of Africa and South America hints at the importance of vicariance in the earlyhistory of Placentalia Dispersal has also been important including the origins of Madagascarrsquosendemic mammal fauna Further studies will benefit from increased taxon sampling and theapplication of new ancestral area reconstruction methods

    Keywords ancestral areas dispersal historical biogeography Mammalia vicariance

    1 INTRODUCTIONClass Mammalia is impressive for its taxonomic ecologi-cal and morphological diversity [1] A fundamental goalof mammalian palaeobiogeography is to reconstruct theunderlying history of vicariant and dispersal events thathave shaped this diversity Here we highlight theimportance of phylogeny reconstruction ancestral areareconstruction and molecular dating for producingancestral area chronograms We compare differentapproaches for reconstructing ancestral areas andillustrate similarities and differences between theseapproaches using a dataset for placental mammals Weconclude with a review of selected topics in placentalmammal palaeogeography that illustrates how phyloge-nies ancestral area reconstructions molecular datesand palaeographic histories have reshaped our views onmammalian historical biogeography Finally we identifyimportant areas for future inquiry

    2 PHYLOGENY RECONSTRUCTIONPhylogeny reconstruction begins with character dataLarge molecular datasets have yielded robust phyloge-nies for many groups thereby reducing the number of

    r for correspondence (markspringerucredu)

    tribution of 12 to a Theme Issue lsquoGlobal biodiversity oflsrsquo

    2478

    phylogenetic hypotheses that must be considered whenformulating ancestral area chronograms The inclusionof morphological data from fossils allows for taxono-mically richer phylogenies while also providing keydata points that bear on the geographical provenanceof a taxonomic group In the words of Simpson [2]fossils lsquoare the historical documents of animal distri-butionrsquo Fossils are also more difficult to place withconfidence in a phylogenetic framework owing to miss-ing (molecular) data and the inability of currentmethods to separate homology and homoplasy withsome morphological datasets [34]

    Maximum parsimony (MP) and maximum likeli-hood (ML) yield a single best tree(s) whereasBayesian methods yield a sampling of trees from pos-terior probability space ML and Bayesian methodshave the advantage of incorporating models ofsequence evolution and yield trees with branchlengths Some ancestral area reconstruction methodssuch as those implemented in SIMMAP [5] cantake advantage of trees with branch lengths as wellas multiple trees from posterior probability space

    Phylogeny reconstruction is usually the first step inconstructing an ancestral area chronogram followedby the estimation of divergence times at each of thenodes However BEAST [6] allows for simultaneousestimation of branching relationships and divergencetimes After reconstructing a phylogeny molecular

    This journal is q 2011 The Royal Society

    palaeobiogeographicreconstructions

    phylogenies

    paleontologicaldata

    chronograms

    ancestral areachronograms

    moleculardating

    palaeogeographicreconstructions

    geophysicsclimatologysedimentologystratigraphygeology

    phylogenyreconstruction

    ancestral areareconstruction

    neontologicaldata

    general area chronogram

    Figure 1 A flowchart of the approach used for incorporating different types of data in conjunction with methods in phylogenyreconstruction molecular dating and ancestral area reconstruction for inferring ancestral area chronograms and palaeobiogeo-graphic history

    Mammalian historical biogeography M S Springer et al 2479

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    dating analyses and ancestral area reconstructions canbe performed in parallel or in series and thenintegrated to yield an ancestral area chronogram(figure 1)

    3 MOLECULAR DATING ANALYSESMolecular clocks were introduced by Zuckerkandl ampPauling [7] but have fallen out of favour owing tothe prevalence of lineage-specific rate variation Theemergence of relaxed molecular clock methods haspromoted a resurgence of studies that have examinedboth interordinal and intraordinal divergence timesin Mammalia [8ndash23] Relaxed clock methods includepenalized likelihood approaches [2425] and BayesianMarkov chain Monte Carlo methods such as multidiv-time [26] BEAST [6] and mcmctree [27] It is useful tocompare both the results of different programs and theresults of the same program under different model andparameter settings [28ndash30]

    An important difference between BEASTand multi-divtime is that BEAST allows rates to vary randomlyover lineages in a phylogeny whereas multidivtimeassumes autocorrelated rates In simulation studiesBEAST performed poorly when rates were autocorre-lated whereas multidivtime performed poorly whenthere was uncorrelated rate variation [28] Giventhese results Battistuzzi et al [28] recommended com-posite 95 credibility intervals

    Relaxed clock methods allow for multiple calibra-tions including minimum and maximum constraintson individual nodes Multidivtime only allows forlsquohardrsquo constraints whereas BEAST and mcmctree pro-vide other options including lsquosoftrsquo constraints thatpermit specification of a given percentage (eg 95)of the normal distribution between the minimumand maximum with half of the remainder (eg25) allocated to each tail

    Phil Trans R Soc B (2011)

    4 ANCESTRAL AREA RECONSTRUCTIONMethods for reconstructing historical biogeographyinclude dispersalism phylogenetic biogeography pan-biogeography parsimony analysis of endemicity andcladistic biogeography [31] Early reconstructions ofmammalian historical biogeography were based on dis-persalism and land bridges [232] and pre-date thegeneral acceptance of plate tectonic theory Sub-sequently cladistic biogeography emphasized vicarianceas the most important factor in diversification bydiscovering dichotomous area relationships (area clado-grams) from taxon cladograms In response to thisparadigm which paid little regard to dispersal andextinction Ronquist [33] proposed dispersalndashvicarianceanalysis (DIVA) for reconstructing patterns of historicalbiogeography [34] DIVA infers ancestral areas by mini-mizing the number of dispersal and extinction eventsRecent methods that build on Ronquistrsquos work includeBayes-DIVA [35] and dispersalndashextinction cladogenesis(DEC) [3637]

    A fundamental issue in ancestral area reconstructionis area coding Areas are usually coded to include theentire geographical range of each species Other optionsinclude coding the entire area of the monophyletic cladethat is represented by the species or the geographicalarea of the oldest fossil belonging to each lineage Anadditional topic worthy of investigation is the problemof coding geographical areas for taxa from the geologicalpast versus the present given that areas as well as theirboundaries and physical relationships to each othercan fluctuate over time Parametric methods such asDEC which allow for changing dispersal probabilitiesover time provide a mechanism to accommodate theimpact of continental fragmentation and suturing on his-torical biogeography

    Three general approaches are available for codingareas (box 1) whether for living species fossils orlarger monophyletic groups The first method is

    Box 1 Methods for coding areas and analysing area-coded data matrices

    I Area coding1 single multi-state character coding Individual character states are non-overlapping and correspond to a single areadisadvantages ranges are limited to a single area (character state) unless they are coded as polymorphic2 binary character coding with multiple characters Each binary character corresponds to the presenceabsence of a taxonin a single areaadvantages allows for the occupation of multiple areasdisadvantages ancestral areas may receive no state assignments3 string character coding (frac14polymorphism coding)advantages individual character states may include one or more areasdisadvantages the number of character states becomes intractable when there are too many individual areas

    II Ancestral area reconstruction1 monomorphic ancestral area reconstruction methods These methods are used in conjunction with area data that havebeen coded as a single multi-state charactera Fitch parsimony (eg MACCLADE)b stochastic mapping (eg SIMMAP)advantages stochastic mapping allows for branch lengths and multiple treesdisadvantages methods in this category implicitly assume that different character states (areas) are homologous toeach other and attempt to find a single ancestral area (character state) at each node2 polymorphic ancestral area reconstruction methods These methods allow for ancestral areas that encompass more thanone area and employ either binary character data for multiple characters or string character dataa Fitch parsimony (eg MACCLADE) with multiple binary charactersb stochastic mapping (eg SIMMAP) with multiple binary charactersc dispersalndashvicariance (DIVA)d Bayes-DIVAe dispersalndashextinction cladogenesis (DEC)f minimum area change (MAC) parsimonyadvantages all methods in this category allow for reconstructions that include multiple areas per node Stochasticmapping and DEC incorporate branch lengths stochastic mapping and Bayes-DIVA allow for multiple treesdisadvantages methods that employ multiple binary characters can result in empty ancestral area reconstructionsFitch parsimony MAC parsimony and DIVA ignore branch length information DIVA Bayes-DIVA and DEC arebiased towards ancestral reconstructions that include numerous individual areas

    2480 M S Springer et al Mammalian historical biogeography

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    single character multi-state coding with non-overlap-ping character states The second method is binarycharacter coding with multiple characters whereeach character represents the presence or absence ofa taxon in a single area In contrast to the firstmethod this approach allows ancestral nodes toencompass more than one area Ancestral area recon-structions are simply the sum of the individual areareconstructions A disadvantage of this approach isthat ancestral areas may receive lsquono-statersquo assignmentswhich imply empty ancestral areas No-state assign-ments are an artefact of the character independenceassumption [38] Finally string character coding[37] allows individual character states to include oneor more geographical areas Specifically the geo-graphical range of a species is coded as a stringdenoting its presenceabsence in a set of individualareas Ree amp Smithrsquos [37] string character coding isequivalent to Maddison amp Maddisonrsquos [39] poly-morphism coding

    Ancestral reconstruction methods can be dividedinto parsimony versus Bayesianlikelihood approaches[40] Only the latter takes advantage of branch lengthsAnother useful distinction is between methods thatreconstruct ancestral nodes as monomorphic characterstates versus those that allow for range expansion andcontraction

    MP and ML methods employ discrete-state tran-sition models and reconstruct ancestral nodes asmonomorphic Monomorphic methods for character

    Phil Trans R Soc B (2011)

    state reconstruction assume that different characterstates are homologous to each other as is the casefor characters that pass Pattersonrsquos [41] conjunctiontest which states that two structures that are foundin the same organism cannot be homologous How-ever this test is nonsensical when applied togeographical areas because the presence of a speciesin one area does not rule out its presence in anotherarea

    Other ancestral range reconstruction methods havethe advantage of allowing for polymorphic ancestralstates and thereby accommodating range expansionand contraction (box 1) [40] Polymorphic reconstruc-tions can be achieved using (i) monomorphic methodswith multiple binary characters each of which codesfor the presenceabsence of a taxon in one area and(ii) polymorphic methods that allow ancestral nodesto include one or more areas

    Fitch parsimony and stochastic mapping can beused to reconstruct ancestral nodes for multiplebinary characters and then summed over all characterreconstructions to obtain the complete set of areas foreach ancestral node One difficulty is ancestral nodeswith no-state assignments In these instances multipleinterpretations are possible including vicariance of anancestral area that was not included in the originalanalysis If there is geological evidence for formerlycontiguous areas this information may be incorpor-ated into ancillary characters to assist ancestral areareconstructions

    A B C D E F G H I J K L M N O A mdash 2 2 2 1 1 1 3 3 3 2 2 2 4 3 B 2 mdash 2 2 1 3 3 1 1 3 2 2 4 2 3 C 2 2 mdash 2 3 1 3 1 3 1 2 4 2 2 3 D 2 2 2 mdash 3 3 1 3 1 1 4 2 2 2 3 E 1 1 3 3 mdash 2 2 2 2 4 1 1 3 3 2 F 1 3 1 3 2 mdash 2 2 4 2 1 3 1 3 2 G 1 3 3 1 2 2 mdash 4 2 2 3 1 1 3 2 H 3 1 1 3 2 2 4 mdash 2 2 1 3 3 1 2 I 3 1 3 1 2 4 2 2 mdash 2 3 1 3 1 2 J 3 3 1 1 4 2 2 2 2 mdash 3 3 1 1 2 K 2 2 2 4 1 1 3 1 3 3 mdash 2 2 2 1 L 2 2 4 2 1 3 1 3 1 3 2 mdash 2 2 1 M 2 4 2 2 3 1 1 3 3 1 2 2 mdash 2 1 N 4 2 2 2 3 3 3 1 1 1 2 2 2 mdash 1 O 3 3 3 3 2 2 2 2 2 2 1 1 1 1 mdash

    A = Africa B = Eurasia C = North America D = South America E = Africa + Eurasia F = Africa + North America G = Africa + South America H = Eurasia + North America I = Eurasia + South America

    J = North America + South America

    K = Africa + Eurasia + North America

    L = Africa + Eurasia + South America

    M = Africa + North America + South America

    N = Eurasia + North America + South America

    O = Africa + Eurasia + North America + South America

    Figure 2 Example of a step matrix for minimum area change (MAC) parsimony MAC parsimony assigns equal cost to allgains and losses of an area For example a change in area from A (Africa) to G (Africa thorn South America) requires onestep (gain South America) whereas a change from A to H (Eurasia thornNorth America) requires three steps (Africa loss Eurasiagain North America gain) The step matrix is fully symmetrical

    Mammalian historical biogeography M S Springer et al 2481

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    In contrast to methods that were co-opted fromphylogenetics DIVA [33] and DEC [363742] weredeveloped explicitly for historical biogeographicreconstruction DIVA assigns no cost to widespreadancestral areas that are subdivided by vicariance butassigns a cost to dispersal and local extinctionevents DIVA ignores branch lengths DEC uses a con-tinuous time model for geographical range evolutionand employs string character coding to accommodatepolymorphic areas DEC permits range expansionthrough dispersal events and range contractionthrough local extinction events DEC also allowsareas of implausible distribution to be excludedsuch as those that are geographically discontinuous[43] DIVA and DEC are prone to reconstructingancestral areas that include too many individualareas especially towards the root of the tree Howeverboth programmes have options for limiting thenumber of ancestral areas

    An additional approach that we introduce is mini-mum area change (MAC) parsimony which usespolymorphic character coding [39] and Sankoff optim-ization and can be implemented with MESQUITE [44]MAC parsimony requires a step matrix (figure 2) Incontrast to DIVA MAC parsimony assigns equal costto all gains and losses of an area whether through dis-persal local extinction or vicariance An advantage ofthis approach is that it should be less prone than DIVAto reconstructing ancestral areas that are too broadrelative to terminal taxa

    Another recent approach that builds on earlier cla-distic biogeography methods is phylogenetic analysisof comparing trees (PACT) [45ndash47] Unlike earlier

    Phil Trans R Soc B (2011)

    cladistic biogeography methods PACT explicitlyincorporates molecular dates into general areacladograms

    5 ANCESTRAL AREA CHRONOGRAMS ANDPALAEOGEOGRAPHYAncestral area chronograms are similar to ancestral areacladograms but additionally incorporate temporal infor-mation into their framework Alternate approaches forreconstructing phylogeny estimating divergence timesand reconstructing ancestral areas may yield differentancestral area chronograms each of which may beinterpreted in the context of geology-based palaeogeogra-phical hypotheses (figure 1) Ancestral area chronogramsin conjunction with geology-based palaeogeographicalreconstructions provide a framework for proposingtesting and refining palaeobiogeographic hypothesesAncestral area chronograms when interpreted in thecontext of palaeogeographical hypothesis yield insightsinto dispersal vicariance and area extinctions all ofwhich are incorporated into palaeobiogeographichypotheses (figure 1)

    Ancestral area chronograms are taxon-specific butancestral area chronograms for multiple taxa that co-occur in the same region can yield general area chron-ograms General area chronograms are similar togeneral area cladograms but include temporal infor-mation that is absent from general area cladogramsThe fundamental idea behind cladistic biogeographyis that broad patterns which are revealed through gen-eral area cladograms demand comprehensive causalexplanations However general area cladograms

    2482 M S Springer et al Mammalian historical biogeography

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    ignore temporal information and may result frompseudo-congruence when taxonomic groups with thesame area relationships have different divergencetimes and presumably different underlying causes[48] Temporal information is critical for discriminat-ing between groups that diversified during the sametime period and therefore may have experienced thesame causal events and groups that diversifiedduring different time periods and require differentcausal explanations [48]

    Just as there may be multiple ancestral area chro-nograms for a taxonomic group there may also bemultiple palaeogeographical hypotheses regarding thehistory of connections of formerly connected land-masses For example the lsquopan-Gondwananrsquo andlsquoAfrica-firstrsquo hypotheses represent alternate scenariosfor the breakup of Gondwana [49] Both hypothesesagree that the initial rift was between the African com-ponent of West Gondwana (Africa South America)and the Indo-Madagascar component of EastGondwana although connections between Africa andIndo-Madagascar were maintained via South Amer-icandashAntarctica Subsequent to this initial rift the pan-Gondwanan hypothesis [50] postulates that three vicar-iant separations South America from Africa SouthAmerica from Antarctica and Antarctica from Indo-Madagascar all occurred during a narrow timewindow (100ndash90 Ma) The Africa-first hypothesis inturn suggests that Africa was the first Gondwanan con-tinent to become completely separated from otherGondwanan landmasses when it separated fromSouth America by approximately 100 Ma Indo-Mada-gascar separated from AntarcticandashAustralia atapproximately 130ndash110 Ma but maintained subaerialconnections with Antarctica via the Kerguelen Plateauand possibly the Gunnerus Ridge to the west well intothe Late Cretaceous (approx 80 Ma) The final separ-ation was between the Antarctica Peninsula and the tipof South America in the Eocene

    Krause et al [49] compared Cretaceous vertebratefaunas from different Gondwanan landmasses and con-cluded that palaeontological data are most compatiblewith a modified version of the Africa-first hypothesisKrause et alrsquos [49] work also illustrates how biogeographichypotheses based on fossils can be compared withgeology-based palaeogeographical hypotheses in anarena that allows for reciprocal illumination Thus ances-tral and general area chronograms provide a frameworkfor evaluating competing geology-based palaeogeo-graphical reconstructions just as geology-basedpalaeogeographical reconstructions provide a frameworkfor evaluating alternate ancestral area chronograms(figure 1) Krause et al [49] noted that there is no apriori reason to assume that geological data trumppalaeontological data or vice versa insofar as each typeof data can be used to reveal large-scale biogeographicpatterns

    6 PLACENTAL PHYLOGENY AND ACOMPARISON OF DIFFERENT ANCESTRALAREA RECONSTRUCTION METHODSMost placental orders have first fossil occurrences andprobable origins in Laurasia but there are also orders

    Phil Trans R Soc B (2011)

    with Gondwanan origins based on first fossil occur-rences in South America (Xenarthra) or Africa (mostafrotherian orders) Traditional morphologicalphylogenies [5152] have suggested close relationshipsbetween Laurasian and Gondwanan orders egEdentata (Xenarthra (Gondwanan) thorn Pholidota(Laurasian)) By contrast molecular phylogenies haverecovered three superordinal groups AfrotheriaLaurasiatheria and Euarchontoglires [353ndash63] thatwere not recovered on morphological trees Thesethree groups plus Xenarthra comprise the four majorclades of placental mammals There is also robust mol-ecular support for Boreoeutheria (EuarchontogliresthornLaurasiatheria) [60ndash6264] This overhaul of placentalphylogeny in conjunction with the results of moleculardating analyses laid the foundation for newbiogeographic hypotheses We discuss these in sect7 afterfirst comparing the results of different ancestralarea reconstruction methods in the remainder ofthis section

    Ancestral area chronograms were reconstructed for43 fully terrestrial placental taxa from Springer et al[3] Chiropterans and fully aquatic forms wereexcluded because of their different modes of dispersal(ie flight swimming) and also because most fullyaquatic taxa inhabit areas (ie oceans) that are notcontained in the four-area scheme used in our analyses(see below) Ancestral area chronograms were recon-structed using a ML phylogram obtained withRAXML [65] molecular divergence dates estimatedwith BEAST [6] and ancestral areas reconstructedwith a variety of methods

    Four areas (Africa Eurasia North America andSouth America) were recognized and two methodswere used to code areas for terminal taxa Firstareas were coded based on the geographical ranges ofextant species Second areas were coded based onthe geographical provenance of the oldest fossil foreach lineage The step matrix that was used in MACparsimony analysis is shown in figure 2 Given thatthe number of character states that are chosen for geo-graphical range subdivision is arbitrary it may beinstructive to compare the results of analyses withcoarser (eg Gondwana versus Laurasia) and finer(eg Europe and Asia instead of Eurasia) scales forarea coding although the analyses reported here areconfined to the four areas listed above

    We reconstructed ancestral areas using ninemethods (i) MAC parsimony (ii) Fitch parsimonywith multiple binary characters (FP-MBC) (iii) Fitchparsimony with a single multi-state character (FP-SMC) (iv) DIVA with no constraints on the maximumnumber of areas per node (v) DIVA with a maximumof two areas per node (DIVA-2) (vi) DEC with no con-straints on the maximum number of areas per node(vii) DEC with a maximum of two areas per node(DEC-2) (viii) stochastic mapping with multiplebinary characters (SM-MBC) and (ix) stochastic map-ping with a single multi-state character (SM-SMC)Ancestral area chronograms (MAC parsimony) basedon the geographical ranges of extant species and fossillineages are shown in figures 3 and 4 respectivelyTables 3 and 4 summarize the results of analyses withall nine methods

    0204060

    NeogeneQuaternary

    CenozoicPaleogene

    Ma

    Upper Miocene PP

    80

    Paleoc

    100

    OligEoceneCretaceousMesozoic

    Choloepus

    Tamandua

    MyrmecophagaEuphractus

    Chaetophractus

    Erinaceus

    Talpa

    Sorex

    Echinops

    Amblysomus

    Procavia

    Loxodonta

    MacroscelidesElephantulus

    Orycteropus

    Tamias

    Muscardinus

    Mus

    Rattus

    PedetesHystrix

    Castor

    Dipodomys

    CaviaHydrochaeris

    Erethizon

    SylvilagusOchotona

    Cynocephalus

    TupaiaLemur

    Homo

    Tarsius

    Hippopotamus

    Lama

    Tragelaphus

    Sus

    Equus

    Ceratotherium

    TapirusFelis

    Canis

    Manis

    Africa

    South America

    Eurasia

    North America

    Africa + EurasiaAfrica + North America

    1

    23

    4

    56

    7

    16

    17

    1819

    20

    2122

    23

    12

    13

    14

    15

    8

    9

    1011

    31

    32

    33

    34

    35

    36

    3738

    28

    2930

    2425

    26

    27

    4239

    41

    40

    Figure 3 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on extant ranges forterminal taxa RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times MAC parsi-mony was used to infer ancestral areas with the step matrix in figure 2 We employed soft constraints (nodes 3 8 10 16 19

    21 32 34 36 38 41) that followed a normal distribution with 95 of the normal distribution between the specified mini-mum and maximum constraints (table 1) Areas for extant taxa are enumerated in table 2 and are colour-coded as followsAfrica blue Eurasia green North America brown South America red Multi-coloured names denote taxa that occur inmore than one area (table 2) Nodes with unambiguous ancestral area reconstructions are shown with a single colouredcircle nodes with ambiguous reconstructions are shown with two or more circles and each coloured circle corresponds to

    a different reconstruction

    Mammalian historical biogeography M S Springer et al 2483

    Phil Trans R Soc B (2011)

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    Table 1 Fossil constraints Minimum ages are based on the age of the oldest unequivocal fossils belonging to the clade

    Maximum ages are based on the maximum of stratigraphic bounding [66] phylogenetic bracketing [6768] and phylogeneticuncertainty Stratigraphic bounding encompassed two successive underlying fossil-bearing deposits that did not contain anyfossils from the lineage of interest phylogenetic bracketing encompassed the age of the oldest fossils that were up to twonodes below the divergence event and phylogenetic bracketing allowed for the possibility that taxa of uncertain phylogeneticaffinities belong to the crown clade first outgroup or second outgroup Dates used in stratigraphic bounding are from

    Gradstein et al [69] We recognized the following chronological units in succession from youngest to oldest PleistocenePliocene Late Miocene Middle Miocene Early Miocene Late Oligocene Early Oligocene Late Eocene Middle EoceneEarly Eocene Late Palaeocene Middle Palaeocene Early Palaeocene Maastrichtian and Campanian

    node numbera

    fossil constraints (Ma)

    oldest fossil for minimum reference(s)minimum maximum

    3 556 712 Eritherium [70]8 585 712 Riostegotherium [6671]

    10 338 655 Antarctic specimenb [7273]16 611 842 Adunator [74]19 371 658 Hesperocyon gregarious [75ndash77]21 555 611 Hyracotherium [78]

    32 484 611 leporid tarsals [79]34 484 611 Eogliravus [80]36 338 56 Gaudeamus [8182]38 118 34 Prodolichotis [83]41 524 611 Mattimys [84]

    aNode numbers refer to figures 3 and 4bThe Eocene Antarctic specimen is an ungual phalanx that Carlini et al [72] identified as a megatheroid sloth Marenssi et al [85] revisedthe identification of the phalanx to include either Tardigrada (sloths) or Vermilingua (anteaters) Subsequently Vizcaıno amp Scillato-Yane[73] described a fragmentary tooth from the Eocene of Antarctica and referred this tooth to Tardigrada but MacPhee amp Reguero [86]reinterpreted this tooth fragment as Mammalia incertae sedis based on histological evidence

    2484 M S Springer et al Mammalian historical biogeography

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    Ambiguous ancestral area reconstructions were aproblem for all methods and the number of nodeswith equivocal reconstructions ranged from four(SM-SMC with extant coding) to 26 (DEC-2 withextant coding) For some methods the number ofambiguous nodes was higher with extant coding thanwith fossil coding (FP-MBC FP-SMC MAC parsi-mony DIVA DIVA-2 DEC DEC-2) but in othercases this pattern was reversed (SM-MBC SM-SMC) Ancestral areas for Placentalia Exafroplacenta-lia (frac14Boreoeutheria thorn Xenarthra) and several nodeswithin Rodentia were reconstructed as ambiguous bynearly all methods Other nodes were consistentlyreconstructed with unambiguous ancestral areasincluding clades with ancestral areas in Africa(Afrotheria and its internal nodes) Eurasia (Euarch-onta Paraprimates [frac14Dermoptera thorn Scandentia]Muridae) North America (Erinaceidae thorn Soricidae)and South America (Xenarthra and its internalnodes Cavioidea) Most analyses reconstructedEurasia as the ancestral area for BoreoeutheriaLaurasiatheria and Euarchontoglires This finding isdiscussed below

    The importance of fossils is illustrated by recon-structions for Lagomorpha (tables 3 and 4) Allmethods returned North America as the ancestralarea when extant taxa were used for area coding butidentified Eurasia with fossil coding

    DIVA and DEC analyses reconstructed more nodeswith multiple areas than did the other methodsAnalyses with DEC reconstructed 17ndash20 nodes withtwo or more areas and four to six nodes with threeor more areas DIVA analyses resulted in 15ndash18

    Phil Trans R Soc B (2011)

    nodes with at least two areas and five to six nodeswith three or more areas None of the other methodsreconstructed ancestral nodes to include three ormore areas in a single reconstruction although threeor four areas were sometimes represented by thefull complement of alternate reconstructions for agiven node

    FP-MBC returned nine empty nodes with extantcoding and five empty areas with fossil coding SM-MBC with extant coding resulted in three or fourempty nodes with extant coding and four emptynodes with extinct coding (table 5)

    7 PLACENTAL BIOGEOGRAPHYAfrotheria (Afrosoricida Hyracoidea MacroscelideaProboscidea Sirenia Tubulidentata) was the first ofthe new superordinal groups to receive robust molecu-lar support [535556] With the exception of Sireniaall afrotherian orders have first fossil occurrences inAfrica and two orders (Macroscelidea Afrosoricida)have evolutionary histories that are restricted to theAfro-Malagasy region Springer et al [53] suggestedthat interordinal separation of afrotherian orders com-menced during a window of isolation that began in theCretaceous after Africa separated from South Amer-ica and lasted until the early Cenozoic when Africadocked with Europe Consistent with this scenarioAfrica was unambiguously reconstructed as the ances-tral area for Afrotheria (figures 3 and 4) Thishypothesis contrasts with traditional views whereinthe African mammal fauna arrived from the northincluding a condylarth stock that arrived in Africa

    Table 2 Geographical area of extant taxa and oldest fossils used in ancestral area reconstruction

    taxona area of extant species area of oldest fossilb

    Choloepus didactylus SA SA Megalonychidae Miocene [87]Tamandua tetradactyla SA SA Tamandua Pleistocene [87]

    Myrmecophaga tridactyla SA SA Neotamandua Miocene [8788]Euphractus sexcinctus SA SA Zaedyus Pliocene [8789]Chaetophractus villosus SA SA Chaetophractus Pliocene [90]Erinaceus europaeus Eurasia NA Adunator Palaeocene [74]Talpa altaica Eurasia Eurasia Eotalpa Eocene [91]

    Sorex araneus Eurasia NA Domnina Eocene [92]Echinops telfairi Africa Africa Widanelfarasia Eocene [93]Amblysomus hottentotus Africa Africa Eochrysochloris Oligocene [93]Procavia capensis Africa Africa Seggeurius Eocene [94]

    Loxodonta africana Africa Africa Eritherium Palaeocene [70]Macroscelides proboscideus Africa Africa Macroscelides Pliocene [95]Elephantulus rufescens Africa Africa Elephantulus Pliocene [95]Orycteropus afer Africa Africa Orycteropus Miocene [96]Tamias striatus NA NA Spurimus Eocene [97]

    Muscardinus avellanarius Eurasia Eurasia Eogliravus Eocene [80]Mus musculus Eurasia Eurasia Progonomys Miocene [74]Rattus norvegicus Eurasia Eurasia Karnimata Miocene [74]Pedetes capensis Africa Africa Pondaungimys Eocene [98]Hystrix brachyurus Eurasia Africa Gaudeamus Eocene [81]

    Castor canadensis NA NA Mattimys Eocene [84]Dipodomys merriami NA NA Proheteromys Oligocene [99]Cavia porcellus SA SA Prodolichotis Miocene [83100]Hydrochaeris hydrochaeris SA SA Cardiatherium Miocene [101]Erethizon dorsatum NA SA Eopululo Eocene [102]

    Sylvilagus floridanus NA SA Eurasia tarsal elements Eocene [79]Ochotona princeps NA Eurasia Sinolagomys Oligocene [103104]Cynocephalus variegatus Eurasia Eurasia Dermotherium Eocene [105]Tupaia minor Eurasia Eurasia Eodendrogale Eocene [106]Lemur catta Africa Africa Pachylemur Quaternary [107]

    Homo sapiens Eurasia NA SA Africa Eurasia Anthrasimias Palaeocene [108]Tarsius syrichta Eurasia Eurasia Tarsius Eocene [109]Hippopotamus amphibius Africa Africa Morotochoerus Miocene [110]Lama glama SA NA Poebrodon Eocene [111]

    Tragelaphus eurycerus Africa Eurasia Archaeomeryx Eocene [112]Sus scrofa Eurasia Africa Eurasia Eocenchoerus Eocene [113]Equus caballus Eurasia Eurasia NA Hyracotherium Eocene [78114115]Ceratotherium simum Africa NA Hyracodontidae Eocene [116]Tapirus indicus Eurasia NA Helaletes Eocene [117]

    Felis catus Africa Eurasia Stenoplesictis Eocene [118119]Canis familiaris Eurasia NA Hesperocyon Eocene [120]Manis pentadactyla Eurasia Eurasia Eomanis Eocene [121]

    aIn cases of chimeric taxa we used the most common species from Springer et alrsquos [3] concatenated supermatrix NA North AmericaSA South AmericabArea of the oldest stem fossil belonging to the terminal branch represented by each living taxon

    Mammalian historical biogeography M S Springer et al 2485

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    from Europe in the early Cenozoic and insectivoresthat arrived in the Neogene [124]

    Asher et al [125] Zack et al [126] and Tabuce et al[127] suggested that the geographical distributions ofliving afrotherians are not representative of the histori-cal geographical distribution of this clade and thatAfrotheria is Holarctic in origin based on the place-ment of extinct taxa from the Palaeocene of Laurasiawithin or at the base of Afrotheria However pseu-doextinction tests call into question the reliability ofthe placement of fossil taxa in morphological cladisticanalyses [3]

    The oldest xenarthran fossils are scutes from thePalaeocene of South America [71] Living membersof Xenarthra (anteaters sloths armadillos) are

    Phil Trans R Soc B (2011)

    restricted to South and Central America with theexception of the nine-banded armadillo whose ances-tors dispersed to North America during the GreatAmerican Interchange [128] Simpson [129130] sup-ported the view that South American xenarthransevolved in situ during South Americarsquos isolation fromother continents in the early Tertiary All of our ana-lyses are consistent with the hypothesis that SouthAmerica was the ancestral area for Xenarthra (figures3 and 4)

    The remaining placental orders are placed in Laur-asiatheria (Eulipotyphla Chiroptera PerissodactylaCetartiodactyla Carnivora Pholidota) and Euarchon-toglires (Primates Dermoptera Scandentia RodentiaLagomorpha) With the exception of bats these orders

    0204060

    NeogeneQuaternary

    Cenozoic

    Paleogene

    Ma

    Upper Miocene PP

    80

    Paleoc

    100

    OligEoceneCretaceousMesozoic

    Choloepus

    Tamandua

    MyrmecophagaEuphractus

    Chaetophractus

    Erinaceus

    Talpa

    Sorex

    Echinops

    Amblysomus

    Procavia

    Loxodonta

    MacroscelidesElephantulus

    Orycteropus

    Tamias

    Muscardinus

    Mus

    Rattus

    PedetesHystrix

    Castor

    Dipodomys

    CaviaHydrochaeris

    Erethizon

    SylvilagusOchotona

    Cynocephalus

    TupaiaLemur

    Homo

    Tarsius

    Hippopotamus

    Lama

    Tragelaphus

    Sus

    Equus

    Ceratotherium

    TapirusFelis

    Canis

    Manis

    Africa

    South America

    Eurasia

    North America

    Africa + EurasiaAfrica + North AmericaEurasia + North America

    1

    23

    4

    56

    7

    16

    17

    1819

    20

    2122

    23

    12

    13

    14

    15

    8

    9

    1011

    31

    32

    33

    34

    35

    36

    3738

    28

    2930

    2425

    26

    27

    4239

    41

    40

    Figure 4 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on the oldest fossil foreach lineage RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times and MAC par-simony was used to infer ancestral areas with the step matrix in figure 2 Areas for the oldest fossil lineage are enumerated intable 2 and are colour-coded as follows Africa blue Eurasia green North America brown South America red Nodes with

    unambiguous ancestral area reconstructions are shown with a single coloured circle nodes with ambiguous reconstructions areshown with two or more circles and each coloured circle corresponds to a different reconstruction

    2486 M S Springer et al Mammalian historical biogeography

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    have first fossil occurrences that are exclusively Laura-sian Our reconstructions provide support for Eurasiabut not North America as the ancestral area for theseclades (figures 3 and 4) These results are consistent

    Phil Trans R Soc B (2011)

    with previous suggestions that Cretaceous zhelestidsand zamlambdalestids from Asia are members ofcrown Placentalia [131132] Further the fossilrecord suggests that Eutheria were dominant in

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    (Con

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    Mammalian historical biogeography M S Springer et al 2489

    Phil Trans R Soc B (2011)

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    Tab

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    2490 M S Springer et al Mammalian historical biogeography

    Phil Trans R Soc B (2011)

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    Table 5 Comparison of different methods for reconstructing ancestral areas NA1 not applicable for monomorphic

    reconstruction methods NA2 not applicable when the maximum number of areas is set at two NA2 not applicable formethods that employ single multistate charactersa

    FP-MBC FP-SMCMACParsimony DIVA DIVA-2 DEC DEC-2 SM-MBC SM-SMC

    nodes with ambiguous 75 129 128 1211 107 2323 2623 1617 614reconstructionsb 1920 1718 1012 410

    nodes with 2 areasc 33 NA1 46 1618 1516 1820 2019 77 NA11720 1717 46

    nodes with 3 areasd 00 NA1 00 65 NA2 66 NA2 00 NA145 00

    empty nodese 95 NA3 NA3 NA3 NA3 NA3 NA3 34 NA344

    aNumbers before slashes are based on analyses with area coding for extant taxa and numbers after slashes are based on analyses with areacoding for the oldest fossil See table 3 for abbreviationsbFor FP-MBC nodes were considered ambiguous if at least one area was reconstructed as (01) For SM-MBC and SM-SMC nodes wereconsidered ambiguous if the posterior probability (PP) of at least one area was 01 PP 09 (top line) or 02 PP 08 (bottom line)For DEC and DEC-2 nodes were considered ambiguous if the frequency ( f ) of at least one area was 01 f 09 (top line) or 02 p 08 (bottom line)cAt least two areas in at least one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) was takento include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line) or020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02 (bottomline)dAt least three areas in more than one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) wastaken to include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line)or 020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02(bottom line)eFor FP-MBC nodes were considered empty if all areas were reconstructed as 0 For SM-MBC nodes were considered empty if posteriorprobabilities were 010 (top line) or 020 (bottom line) for all four areas

    Mammalian historical biogeography M S Springer et al 2491

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    Eurasia throughout the Cretaceous but were absentfrom North America through much of the Late Cre-taceous and only attained appreciable diversity thereduring the last approximately 10 Myr of the period[133134] Boyer et al [135] concluded that theIndian subcontinent Eurasia and Africa are morelikely places of origin for Euarchonta than is NorthAmerica This agrees with our ancestral areareconstructions (figures 3 4 and tables 3 4)

    Although there is robust support for the monophylyof Xenarthra Afrotheria and Boreoeutheria relation-ships among these three groups and the root of theplacental tree remain contentious [105460ndash63136]Murphy et al [62] and Springer et al [10] suggested acausal relationship between the sundering of Africa andSouth America and basal cladogenesis among crown-group placental mammals given the coincidence ofmolecular dates for the base of placentals and thevicariant separation of Africa and South Americaapproximately 100ndash120 Ma

    Asher et al [125] analysed a combined matrix andrecovered Afrotheria in a nested position within Pla-centalia which contradicts the hypothesis that theplate tectonic separation of Africa and South Americaplayed a causal role in the early cladogenesis of placen-tal mammals However the nested position forAfrotheria resulted from the paraphyly of Euarchonto-glires Glires and Rodentia Rare genomic changesconfirm the monophyly of Xenarthra [137] Afrotheria[138ndash142] Euarchontoglires [139141142] Laura-siatheria [139141142] and Boreoeutheria[139141142] and preclude a nested position forAfrotheria in the placental tree

    Rare genomic changes have also been used toexamine the position of the placental root Kriegs

    Phil Trans R Soc B (2011)

    et al [139] reported LINE insertions that are sharedby Epitheria whereas Murphy et al [16] discoveredrare genomic changes that support AtlantogenataNishihara et al [142] performed genome-wide retro-poson analyses and found 22 25 and 21 LINEinsertions for Exafroplacentalia Epitheria and Atlan-togenata respectively Based on these resultsNishihara et al [142] concluded that XenarthraAfrotheria and Boreoeutheria diverged from oneanother nearly simultaneously They also suggested anew palaeogeographical model for the breakup of Pan-gaea and Gondwana in which Africa becomes isolatedfrom both South America and Laurasia at approxi-mately 120 Ma and argued that these coeval platetectonic events provide an explanation for the simul-taneous divergence of Afrotheria Xenarthra andBoreoeutheria However relaxed clock dates for thebase of Placentalia are closer to 100 Ma than to120 Ma (figures 3 and 4) A second difficulty concernsthe opening of the South Atlantic Nishihara et al[142] suggested that the Brazilian Bridge which rep-resented the last connection between Africa andSouth America was severed at approximately120 Mya but other recent reconstructions suggestthat the connection between the South Atlantic andCentral Atlantic was not established until lateAptianmid-Albian times (approx 110ndash100 Ma)[143144]

    8 THE IMPORTANCE OF DISPERSALIn the context of pre-plate tectonic views of theEarth Simpson [2] proposed three types ofmigration routes to describe the movement of ani-mals corridors filter bridges and sweepstakes

    Africa

    Mad

    agas

    car

    Tanzania

    Mozambique

    N

    100 mi

    Figure 5 Present day surface ocean currents in the Mozam-bique Channel (solid arrows) are southndashsouthwest andwould not have facilitated west to east transoceanic dispersalfrom Africa to Madagascar [153] By contrast westerly sur-face ocean currents in the Eocene (dashed arrows) would

    have facilitated dispersal across the Mozambique Channelfrom Africa to Madagascar especially during tropicalstorms [154] The outline of Madagascar with dashed linesshows its approximate position relative to Africa during theEocene

    2492 M S Springer et al Mammalian historical biogeography

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    dispersal Corridors connect two areas and are per-meable to all animals filter bridges impose selectivebarriers that affect some but not all animals andsweepstakes dispersal is required when there arestrong barriers to migration such as high mountainbarriers or oceans

    Simpson [2] suggested that Madagascarrsquos livingmammals were the product of sweepstakes dispersalfrom Africa to Madagascar Sweepstakes dispersalhypotheses fell out of favour with the validation ofplate tectonic theory and were summarily dismissedas lsquomiraculousrsquo hypotheses with no scientific basis[145] However it has become apparent that some dis-tributional patterns can only be explained bysweepstakes dispersal [146] Observational data alsoprovide support for long-distance vertebrate dispersal[147] Examples of low probability sweepstakes disper-sal involving mammals include the origins of theendemic mammal fauna in Madagascar and theoccurrence of caviomorph rodents and platyrrhine pri-mates in South America

    Madagascarrsquos strictly terrestrial extant mammal faunaincludes endemic lineages from four placental orderstenrecs (Afrosoricida) euplerids (Carnivora) neso-myines (Rodentia) and lemurs (Primates) In eachlineage Madagascar endemics comprise monophyleticassemblages with closest living relatives in Africa[148149] Madagascar separated from Africa approxi-mately 165 Ma but maintained its connection withAntarctica via the Kerguelen Plateau until as late as80 Ma at which time it became permanentlyseparated from other Gondwanan landmasses This his-tory suggests that Madagascarrsquos terrestrial endemicmammals are either the ancient descendants of vicariantevents that occurred prior to 80 Ma or reached Mada-gascar via transoceanic sweepstakes dispersal at a latertime Another possibility is that a land bridge connectedAfrica and Madagascar between 45 and 26 Ma [150]

    Molecular divergence dates suggest that all fourendemic lineages last shared a common ancestorwith their African sister group in the Cenozoic[148149151152] Poux et al [148] concluded thatdispersal by lemurs rodents and carnivorans musthave occurred by transoceanic dispersal rather thanland bridge dispersal based on molecular dates forthe colonization of Madagascar that were outside ofthe land bridge window ie 60ndash50 Ma for lemurs26ndash19 Ma for carnivorans and 24ndash20 Ma for rodentsHowever present ocean currents allow for dispersalfrom Madagascar to Africa but oppose reciprocal dis-persal from Africa to Madagascar across theMozambique Channel If ocean currents were thesame for most of the Cenozoic as they are todaythey would not have facilitated west to east transocea-nic dispersal across the Mozambique Channel becauseof the strong southndashsouthwest flow of the Mozambi-que Current [153]

    Ali amp Huber [154] addressed this problem by simu-lating surface ocean currents in the Indian Oceanduring the Eocene They concluded that large-scaleocean current systems in the Eocene were profoundlydifferent from modern observed circulatory patternsand that the flow along the African coast was eastwardtowards Madagascar instead of southward through the

    Phil Trans R Soc B (2011)

    Mozambique Channel (figure 5) Ali amp Huber [154]further suggested that dispersal probabilities wereenhanced by tropical storms that (i) generated largefloating tree islands that would have allowed for asuccessful oceanic voyage and (ii) acceleratedtransportation rates from Africa to Madagascar thatwould have allowed for complete crossing of theMozambique Channel in 25ndash30 days

    The dispersal of four groups of fully terrestrialmammals from Africa to Madagascar at a time whenthere was no land bridge is a testament to the impor-tance of rare sweepstakes events in the evolutionaryhistory of Placentalia Even more remarkable is theoccurrence of two different groups of placental mam-mals hystricognath rodents and anthropoid primatesin Africa and South America

    Hystricognathi includes Hystricidae (Old World por-cupines) and Phiomorpha (eg cane rats dassie rats)from the Old World and Caviomorpha (eg porcupineschinchillas) from the New World The oldest hystricog-naths are from the late Eocene Egypt and have beendated at approximately 37 Ma [81] Old World hystri-cognaths are paraphyletic usually with phiomorphshaving closer phylogenetic affinities to South Americancaviomorphs than to hystricids [14155156] Relaxedclock dates suggest that South American caviomorphslast shared a common ancestor with phiomorphsbetween 45 and 36 Ma [81155157] The most recentcommon ancestor of Caviomorpha has been dated at45ndash31 Ma [81155157158]

    PacificOcean

    NorthAtlanticOcean

    SouthAtlantic Ocean

    IndianOcean

    NorthAmerica

    SouthAmerica

    Africa

    Antarctica

    Australia

    Asia

    Europe

    PacificOcean1b

    1b

    1a3

    2

    Middle Eocene

    Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

    South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

    Mammalian historical biogeography M S Springer et al 2493

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

    The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

    Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

    Phil Trans R Soc B (2011)

    phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

    9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

    The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

    Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

    or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

    node number (figure 7) Eick et al [12] re-analysis

    1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

    ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

    3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

    4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

    9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

    10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

    11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

    12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

    ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

    13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

    ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

    BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

    14 A A B C AC BC ABC15 A A B C AC BC

    16 A A B C17 A A B AC BC ABC

    2494 M S Springer et al Mammalian historical biogeography

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

    We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

    Phil Trans R Soc B (2011)

    Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

    FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

    1

    2

    3

    4

    56

    7

    8

    9

    10

    11

    1213

    14

    1516

    17

    EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

    Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

    Mammalian historical biogeography M S Springer et al 2495

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

    10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

    In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

    Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

    Phil Trans R Soc B (2011)

    sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

    In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

    11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

    In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

    With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

    12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

    2496 M S Springer et al Mammalian historical biogeography

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

    MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

    REFERENCES1 Jones K E amp Safi K 2011 Ecology and evolution of

    mammalian biodiversity Phil Trans R Soc B 366

    2451ndash2461 (doi101098rstb20110090)2 Simpson G G 1940 Mammals and land bridges

    J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

    Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

    4 Springer M S Meredith R W Eizirik E Teeling

    E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

    5 Bollback J P 2006 SIMMAP stochastic charactermapping of discrete traits on phylogenies BMC Bioin-form 7 88 (doi1011861471-2105-7-88)

    6 Drummond A J Ho S Y W Phillips M J amp Ram-baut A 2006 Relaxed phylogenetics and dating withconfidence PLoS Biol 4 e88 (doi101371journalpbio0040088)

    7 Zuckerkandl E amp Pauling L 1962 Molecular diseaseevolution and genetic heterogeneity In Horizons in bio-chemistry (eds M Kasha amp B Pullman) pp 189ndash225New York NY Academic Press

    8 Douady C J amp Douzery E J P 2003 Molecular esti-mation of eulipotyphlan divergence times and theevolution of lsquoInsectivorarsquo Mol Phylogenet Evol 28285ndash296 (doi101016S1055-7903(03)00119-2)

    9 Douady C J Catzeflis F Raman J Springer M S

    amp Stanhope M J 2003 Molecular evidence for theSahara as a vicariant agent and the role of Miocene cli-matic events in the diversification of the mammalianorder Macroscelidea (elephant shrews) Proc NatlAcad Sci USA 100 8325ndash8330 (doi101073pnas

    0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

    S J 2003 Placental mammal diversification and theCretaceousndashTertiary boundary Proc Natl Acad SciUSA 100 1056ndash1061 (doi101073pnas0334222

    100)11 Delsuc F Vizcaıno S F amp Douzery E J P 2004

    Influence of Tertiary paleoenvironmental changes onthe diversification of South American mammals a

    relaxed molecular clock study within xenarthransBMC Evol Biol 4 11 (doi1011861471-2148-4-11)

    Phil Trans R Soc B (2011)

    12 Eick G N Jacobs D S amp Matthee C A 2005 Anuclear DNA phylogenetic perspective on the evolutionof echolocation and historical biogeography of extant

    bats (Chiroptera) Mol Biol Evol 22 1869ndash1886(doi101093molbevmsi180)

    13 Teeling E C Springer M S Madsen O Bates POrsquoBrien S J amp Murphy W J 2005 A molecular phy-logeny for bats illuminates biogeography and the fossil

    record Science 307 580ndash584 (doi101126science1105113)

    14 Huchon D Chevret P Jordan U Kilpatrick C WRanwez V Jenkins P D Brosius J amp Schmitz J

    2007 Multiple molecular evidences for a living mamma-lian fossil Proc Natl Acad Sci USA 104 7495ndash7499(doi101073pnas0701289104)

    15 Janecka J E Miller W Pringle T H Wiens FZitzmann A Helgen K M Springer M S amp

    Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

    16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

    the root of the placental mammal tree Genome Res 17413ndash421 (doi101101gr5918807)

    17 Beck R M 2008 A dated phylogeny of marsupialsusing a molecular supermatrix and multiple fossil con-straints J Mammal 89 175ndash189 (doi10164406-

    MAMM-A-4371)18 Meredith R W Westerman M amp Springer M S

    2008 A timescale and phylogeny for lsquobandicootsrsquo (Pera-melemorphia Marsupialia) based on sequences for five

    nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

    19 Meredith R W Westerman M amp Springer M S2008 Phylogeny and timescale for the living genera ofkangaroos and kin (Macropodiformes Marsupialia)

    based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

    20 Meredith R W Westerman M amp Springer M S 2009A phylogeny of Diprotodontia (Marsupialia) based onsequences for five nuclear genes Mol Phylogenet Evol51 554ndash571 (doi101016jympev200902009)

    21 Meredith R W Krajewski C Westerman W ampSpringer M S 2009 Relationships and divergencetimes among the orders and families of marsupialsMus N Ariz Bull 65 383ndash406

    22 Chatterjee H J Ho S W Y Barnes I amp Groves C2009 Estimating the phylogeny and divergence times ofprimates using a supermatrix approach BMC EvolBiol 9 259 (doi1011861471-2148-9-259)

    23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

    (doi101016jympev201001033)24 Sanderson M J 1997 A nonparametric approach to

    estimating divergence times in the absence of rate con-stancy Mol Biol Evol 14 1218ndash1231

    25 Sanderson M J 2002 Estimating absolute rates of mol-

    ecular evolution and divergence times a penalizedlikelihood approach Mol Biol Evol 19 101ndash109

    26 Thorne J L amp Kishino H 2002 Divergence time andevolutionary rate estimation with multilocus data SystBiol 51 689ndash702 (doi10108010635150290102456)

    27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

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    28 Battistuzzi F U Filipski A Hedges S B amp KumarS 2010 Performance of relaxed-clock methods in esti-mating evolutionary divergence times and their

    credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

    29 Brown R P amp Yang Z 2010 Bayesian dating of shal-low phylogenies with a relaxed molecular clock SystBiol 59 119ndash131 (doi101093sysbiosyp082)

    30 Inoue J Donoghue P C J amp Yang Z 2010 Theimpact of the representation of fossil calibrations onBayesian estimation of species divergence times SystBiol 59 74ndash89 (doi101093sysbiosyp078)

    31 Morrone J J amp Crisci J V 1995 Historical biogeogra-phy introduction to methods Annu Rev Ecol Syst 26373ndash401 (doi101146annureves26110195002105)

    32 Simpson G G 1965 The geography of evolution collectedessays PhiladelphiaNew York PANY Chilton Books

    33 Ronquist F 1997 Dispersalndashvicariance analysis a newapproach to the quantification of historical biogeogra-phy Syst Biol 45 195ndash203 (doi101093sysbio461195)

    34 Wen J Xiang Q-Y Qian H Li J Want X-W amp

    Ickert-Bond S M Intercontinental and intracontinen-tal biogeographymdashpatterns and methods J Syst Evol4 327ndash329

    35 Nylander J A A Olsson U Alstrom P amp Sanmar-tın I 2008 Accounting for phylogenetic uncertainty

    in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

    36 Ree R H Moore B R Webb C O amp Donoghue

    M J 2005 A likelihood framework for inferring theevolution of geographic range on phylogenetic treesEvolution 59 2299ndash2311

    37 Ree R H amp Smith S A 2008 Maximum likelihoodinference of geographic range evolution by dispersal

    local extinction and cladogenesis Syst Biol 57 4ndash14 (doi10108010635150701883881)

    38 Hardy C R amp Linder H P 2005 Intraspecific varia-bility and timing in ancestral ecology reconstruction atest case from the Cape flora Syst Biol 54 299ndash316

    (doi10108010635150590923317)39 Maddison W P amp Maddison D R 1992 MacClade

    version 3 analysis of phylogeny and character evolutionSunderland MA Sinauer Associates

    40 Clark J R Ree R H Alfaro M E King M G

    Wagner W L amp Roalson E H 2008 A comparativestudy in ancestral range reconstruction methodsretracing the uncertain histories of insular lineagesSyst Biol 57 693ndash707 (doi101080106351508

    02426473)41 Patterson C 1982 Morphological characters and hom-

    ology In Problems of phylogenetic reconstruction (eds K AJoysey amp A E Friday) pp 21ndash74 London UK Aca-demic Press

    42 Ree R H amp Sanmartın I 2009 Prospects and chal-lenges for parametric models in historicalbiogeographical inference J Biogeogr 36 1211ndash1220(doi101111j1365-2699200802068x)

    43 Lamm K S amp Redelings B D 2009 Reconstructing

    ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

    44 Maddison W P amp Maddison D R 2009 Mesquite amodular system for evolutionary analysis version 272See httpmesquiteprojectorg

    45 Wojcicki M amp Brooks D R 2005 PACT an efficientand powerful algorithm for generating area cladogramsJ Biogeogr 32 755ndash774 (doi101111j1365-2699200401148x)

    Phil Trans R Soc B (2011)

    46 Lim B K 2008 Historical biogeography of New Worldemballonurid bats (Tribe Diclidurini) taxon pulsediversification J Biogeogr 35 1385ndash1401 (doi10

    1111j1365-2699200801888x)47 Lim B K 2009 Review of the origins and biogeogra-

    phy of bats in South America Chiroptera Neotropical15 391ndash410

    48 Donoghue M J amp Moore B R 2003 Toward an inte-

    grative historical biogeography J Int Comp Biol 43261ndash270 (doi101093icb432261)

    49 Krause D W OrsquoConnor P M Rogers K C Samp-son S D Buckley G A amp Rogers R R 2006 Late

    Cretaceous terrestrial vertebrates from Madagascarimplications for Latin American biogeography AnnMo Bot Gard 93 178ndash208 (doi1034170026-6493(2006)93[178LCTVFM]20CO2)

    50 Sereno P C Wilson J A amp Conrad J L 2004 New

    dinosaurs link southern landmasses in the Mid-Cretac-eous Proc R Soc Lond B 271 1325ndash1330 (doi101098rspb20042692)

    51 Novacek M J 1992 Mammalian phylogeny shakingthe tree Nature 356 121ndash125 (doi101038

    356121a0)52 Novacek M J 1993 Reflections on higher mammalian

    phylogenetics J Mamm Evol 1 1064ndash755453 Springer M S Cleven G C Madsen O de Jong

    W W Waddell V G Amrine H M amp Stanhope

    M J 1997 Endemic African mammals shake the phylo-genetic tree Nature 388 61ndash64 (doi10103840386)

    54 Springer M S Murphy W J Eizirik E amp OrsquoBrienS J 2005 Molecular evidence for major placental

    clades In The rise of placental mammals origins andrelationships of the major extant clades (eds K D Roseamp J D Archibald) pp 37ndash49 Baltimore MD JohnsHopkins University Press

    55 Stanhope M J Madsen O Waddell V G Cleven

    G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

    56 Stanhope M J Waddell V G Madsen O de Jong

    W W Hedges S B Cleven G C Kao D ampSpringer M S 1998 Molecular evidence for multipleorigins of Insectivora and for a new order of endemicAfrican insectivore mammals Proc Natl Acad SciUSA 95 9967ndash9972 (doi101073pnas95179967)

    57 Waddell P Okada N amp Hasegawa M 1999 Towardsresolving the interordinal relationships of placentalmammals Syst Biol 48 1ndash5 (doi101093sysbio4811)

    58 Waddell P J Kishino H amp Ota R 2001 A phyloge-netic foundation for comparative mammaliangenomics Genome Inform 12 141ndash154

    59 Eizirik E Murphy W J amp OrsquoBrien S J 2001 Mol-ecular dating and biogeography of the early placental

    mammal radiation J Hered 92 212ndash219 (doi101093jhered922212)

    60 Madsen O et al 2001 Parallel adaptive radiations intwo major clades of placental mammals Nature 409610ndash614 (doi10103835054544)

    61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

    62 Murphy W J et al 2001 Resolution of the early placen-

    tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

    63 Scally M Madsen O Douady C J de Jong W WStanhope M J amp Springer M S 2001 Molecular

    2498 M S Springer et al Mammalian historical biogeography

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

    64 Springer M S amp de Jong W W 2001 Which mamma-lian supertree to bark up Science 291 1709ndash1711

    65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

    (doi101093bioinformaticsbtl446)66 Benton M J amp Donoghue P C J 2007 Paleontologi-

    cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

    67 Reisz R R amp Muller J 2004 Molecular timescales andthe fossil record a paleontological perspective TrendsGenet 20 237ndash241 (doi101016jtig200403007)

    68 Muller J amp Reisz R R 2005 Four well-constrainedcalibration points from the vertebrate fossil record for

    molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

    69 Gradstein F M amp Ogg J G 2009 The geologic timescale In The timetree of life (eds S B Hedges amp SKumar) pp 26ndash34 Oxford UK Oxford University Press

    70 Gheerbrant E 2009 Paleocene emergence of elephantrelatives and the rapid radiation of African ungulatesProc Natl Acad Sci USA 106 10717ndash10721(doi101073pnas0900251106)

    71 Bergqvist L P Abrantes E A L amp Avilla L D S

    2004 The Xenarthra (Mammalia) of Sao Jose de Ita-boraı Basin (upper Paleocene Itaboraian) Rio deJaneiro Brazil Geodiversitas 26 323ndash337

    72 Carlini A A Pascual R Reguero M A Scillato-

    Yane G J Tonni E P amp Vizcaıno S F 1990 Thefirst Paleogene land placental mammal from Antarcticaits paleoclimatic and paleobiogeographical bearings InAbstracts IV International Congress of Systematic and Evol-utionary Biology (eds B Cox amp J Reveal) 325 p

    Baltimore MD University of Maryland73 Vizcaıno S F amp Scillato-Yane G J 1995 An Eocene

    Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

    74 Benton M J Donoghue P C J amp Asher R J 2009

    Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

    75 Flynn J J 1996 Carnivoran phylogeny and rates ofevolution morphological taxonomic and molecular

    In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

    76 Hunt Jr R M amp Tedford R H 1993 Phylogenetic

    relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

    77 Wesley-Hunt G D amp Flynn J J 2005 Phylogeny ofthe Carnivora basal relationships among the carnivora-morphans and assessment of the position oflsquoMiacoidearsquo relative to Carnivora J Syst Palaeontol 31ndash28 (doi101017S1477201904001518)

    78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

    79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

    Phil Trans R Soc B (2011)

    80 Storch G amp Seiffert C 2007 Extraordinarily preservedspecimen of the oldest known glirid from the middleEocene of Messel (Rodentia) J Vertebr Paleontol 27

    189ndash194 (doi1016710272-4634(2007)27[189EPSOTO]20CO2)

    81 Sallam H M Seiffert E R Steiper M E amp SimonsE L 2009 Fossil and molecular evidence constrainscenarios for the early evolutionary and biogeographic

    history of hystricognathous rodents Proc Natl AcadSci USA 106 16 722ndash16 727 (doi101073pnas0908702106)

    82 Hartenberger L 1998 Description of the radiation of

    the Rodentia (Mammalia) from the Late Paleocene tothe Miocene phylogenetic consequences C R AcadSci II A 326 439ndash444

    83 Vucetich M G Verzi D H amp Hartenberger L 1999Review and analysis of the radiation of the South

    American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

    84 Flynn L J amp Jacobs L L 2008 Castoridea In Evolution oftertiary mammals of North America small mammals xenar-thrans and marine mammals (eds C M Janis G F

    Gunnell amp M D Uhen) vol 2 pp 391ndash405 CambridgeUK Cambridge University Press

    85 Marenssi S A Reguero M A Santillana S N ampVizcaıno S F 1994 Eocene land mammals from Sey-mour Island Antarctica paleobiogeographical

    implications Antarctic Sci 6 3ndash15 (doi101017S0954102094000027)

    86 MacPhee R D E amp Reguero M A 2010 Reinterpre-tation of a middle Eocene record of Tardigrada (Pilosa

    Xenarthra Mammalia) from La Meseta FormationSeymour Island West Antarctica Am Mus Novit3689 1ndash21 (doi1012067031)

    87 McKenna M C amp Bell S K 1997 Classification ofmammals above the species level New York NY Colum-

    bia University Press88 Gaudin T J amp Branham D G 1998 The phylogeny of

    the Myrmecophagidae (Mammalia Xenarthra Vermi-lingua) and relationship of Eurotamandua to theVermilingua J Mamm Evol 5 237ndash265 (doi10

    1023A1020512529767)89 Galliari F C Carlini A A amp Sanchez-Villagra M R

    2010 Evolution of the axial skeleton in armadillos(Mammalia Dasypodidae) Mamm Biol 75 326ndash333 (doi101016jmambio200903014)

    90 Poljak S Confalonieri V Fasanella M Gabrielli Mamp Lizarralde M S 2010 Phylogeography of the arma-dillo Chaetophractus villosus (Dasypodidae Xenarthra)post-glacial range expansion from Pampas to Patagonia

    (Argentina) Mol Phylogenet Evol 55 38ndash46 (doi101016jympev200912021)

    91 Sige B Crochet J-Y amp Insole A 1977 Les plusvielles taupes Geobios Mem Spec 1 141ndash157(doi101016S0016-6995(77)80014-4)

    92 Gunnell G F Bown T M Hutchinson J H ampBloch J I 2008 Lipotyphla In Evolution of Tertiarymammals of North America small mammals xenarthransand marine mammals vol 2 (eds C M Janis G FGunnell amp M D Uhen) pp 89ndash125 Cambridge

    UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

    amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

    94 Tabuce R Asher R J amp Lehmann T 2008 Afrother-ian mammals a review of current data Mammalia 722ndash14 (doi101515MAMM2008004)

    Mammalian historical biogeography M S Springer et al 2499

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    95 Butler P M 1995 Fossil Macroscelidea Mammal Rev25 3ndash14 (doi101111j1365-29071995tb00432x)

    96 Milledge S 2003 Fossil aardvarks from the Lothagam

    beds In Lothagam the dawn of humanity in EasternAfrica (eds J Leakey amp J Harris) pp 363ndash368New York NY Columbia University Press

    97 Flynn L J amp Jacobs L L 2008 Aplodontia In Evol-ution of tertiary mammals of North America smallmammals xenarthrans and marine mammals vol 2(eds C M Janis G F Gunnell amp M D Uhen) pp377ndash390 Cambridge UK Cambridge UniversityPress

    98 Marivaux L Ducrocq S Jaeger J-J Marandat BSudre J Chaimanee Y Tun S T Htoon W ampSoe A N 2005 New remains of Pondaungimysanomaluropsis (Rodentia Anomaluroidea) from thelatest middle Eocene Pondaung Formation of

    Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

    99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

    100 Antoine P-O et al 2007 The middle Miocene (Laven-

    tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

    Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

    Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

    (doi1016710272-4634(2007)27[683OADOTO]20CO2)

    102 Frailey C D amp Campbell K E 2004 The rodents ofthe Santa Rosa Local Fauna In The Paleogene mamma-lian fauna of Santa Rosa Amazonian Peru (ed K E

    Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

    103 Martin T 2004 Evolution of incisor enamel micro-structure in Lagomorpha J Vertebr Paleontol 24

    411ndash426 (doi1016712513)104 Lopez-Martinez N 2008 The lagomorph fossil

    record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

    105 Marivaux L Bocat L Chaimanee Y Jaeger J-JMarandat B Srisuk P Tafforeau P Yamee C ampWelcomme L 2006 Cynocephalid dermopterans

    from the Palaeogene of South Asia (Thailand Myan-mar and Pakistan) systematic evolutionary andpalaeobiogeographic implications Zool Scripta 35395ndash420 (doi101111j1463-6409200600235x)

    106 Tong Y 1988 Fossil tree shrews from the Eocene

    Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

    107 Godfrey L R amp Jungers W L 2002 Quaternary fossillemurs In The primate fossil record (ed W C Hartwig)pp 97ndash121 Cambridge UK Cambridge University

    Press108 Bajpai S Kay R F Williams B A Das D P

    Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

    Phil Trans R Soc B (2011)

    109 Beard K C Qi T Dawson M R Wang B amp Li C1994 A diverse new primate fauna from middle Eocenefissure-fillings in southeastern China Nature 368

    604ndash609 (doi101038368604a0)110 Orliac M Boisserie J-R MacLatchy L amp Lihoreau

    F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

    111 Honey J G Harrison J A Prothero D R ampStevens M S 1998 Camelidae In Evolution of Tertiarymammals of North America terrestrial carnivoresungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp439ndash462 Cambridge UK Cambridge University Press

    112 Metais G amp Vislobokova I 2008 Basal ruminants In

    The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

    113 Harris J M amp Li-Ping L 2008 Superfamily SuoideaIn The evolution of artiodactyls (eds D R Prothero amp S

    E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

    114 Bowen G J Clyde W C Koch P L Ting SAlroy J Tsubamoto T Wang Y amp Wang Y 2002Mammalian dispersal at the PaleoceneEocene bound-

    ary Science 295 2062ndash2065 (doi101126science1068700)

    115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

    earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

    116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

    117 Colbert M W amp Schoch R M 1998 Tapiroidea and

    other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

    118 Dashzeveg D 1996 Some carnivorous mammals fromthe Paleogene of the Eastern Gobi Desert Mongoliaand the application of Oligocene carnivores to strati-graphic correlation Am Mus Novit 3179 1ndash14

    119 Hunt Jr R M 1998 Evolution of the aeluroid Carni-vora diversity of the earliest aeluroids from Eurasia(Quercy Hsanda-Gol) and the origin of felids AmMus Novit 3252 1ndash65

    120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

    cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

    121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

    122 Huelsenbeck J P amp Ronquist F 2001 MrBAYESBayesian inference of phylogenetic trees Bioinformatics17 754ndash755 (doi101093bioinformatics178754)

    123 Ronquist F amp Huelsenbeck J P 2003 MrBayes 3Bayesian phylogenetic inference under mixed modelsBioinformatics 19 1572ndash1574 (doi101093bioinfor-maticsbtg180)

    2500 M S Springer et al Mammalian historical biogeography

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

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    125 Asher R J Novacek M J amp Geisler J G 2003

    Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

    126 Zack S P Penkrot T A Bloch J I amp Rose K D

    2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

    127 Tabuce R Marivaux L Adaci M Bensalah M

    Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

    128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

    129 Simpson G G 1951 History of the fauna of Latin

    America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

    130 Simpson G G 1978 Early mammals in South Amer-ica fact controversy and mystery Proc Am PhilSoc 122 318ndash328

    131 Archibald J D 1996 Fossil evidence for a Late Cretac-eous origin of lsquohoofedrsquo mammals Science 272 1150ndash1153 (doi101126science27252651150)

    132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

    133 Cifelli R L amp Davis B M 2003 Marsupial origins

    Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

    2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

    135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

    eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

    136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

    pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

    W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

    260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

    N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

    139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

    Phil Trans R Soc B (2011)

    140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

    141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

    0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

    roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

    of mammals Proc Natl Acad Sci USA 106 5235ndash5240

    143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

    144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

    145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

    146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

    73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

    dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

    148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

    108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

    dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

    37091305110239)150 McCall R 1997 Implications of recent geological

    investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

    151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

    152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

    153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

    154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

    155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

    caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

    156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

    Mammalian historical biogeography M S Springer et al 2501

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

    157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

    158 Rowe D L Dunn K A Adkins R M amp Honeycutt

    R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

    159 Beard K C Wang B Dawson M Huang X amp

    Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

    160 Beard K C amp Wang J 2004 The eosimiid primates

    (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

    161 Arnason U Gullberg A Schweizer B A amp Janke A

    2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

    162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

    163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

    164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

    513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

    ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

    AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

    diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

    167 Gunnell G F amp Simmons N B 2005 Fossil evidence

    and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

    168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

    Wyoming and the evolution of flight and echolocationNature 451 818ndash822

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    paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

    170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

    171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

    ian evolution Science 302 1934ndash1939 (doi101126science1090718)

    172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

    Phil Trans R Soc B (2011)

    dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

    173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

    D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

    174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

    from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

    175 Cifelli R L 1993 Theria of metatherianndasheutherian

    grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

    176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

    177 Wible J R 1990 Late Cretaceous marsupial petrosal

    bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

    178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

    pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

    179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

    of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

    180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

    2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

    181 Beck R M Godthelp H Weisbecker V Archer M

    amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

    182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

    Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

    183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

    for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

    184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

    implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

    185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

    phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

    186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

    marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

    187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

    2502 M S Springer et al Mammalian historical biogeography

    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

    mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

    188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

    189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

    190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

    Phil Trans R Soc B (2011)

    Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

    191 Springer M S amp Krajewski C 2009 Monotremes

    (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

    192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

    53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

    In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

    194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

    • The historical biogeography of Mammalia
      • Introduction
      • Phylogeny reconstruction
      • Molecular dating analyses
      • Ancestral area reconstruction
      • Box 1
      • Ancestral area chronograms and palaeogeography
      • Placental phylogeny and a comparison of different ancestral area reconstruction methods
      • Placental biogeography
      • The importance of dispersal
      • Bat biogeography
      • Marsupial biogeography
      • Monotreme biogeography
      • Conclusions
      • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
      • REFERENCES

      palaeobiogeographicreconstructions

      phylogenies

      paleontologicaldata

      chronograms

      ancestral areachronograms

      moleculardating

      palaeogeographicreconstructions

      geophysicsclimatologysedimentologystratigraphygeology

      phylogenyreconstruction

      ancestral areareconstruction

      neontologicaldata

      general area chronogram

      Figure 1 A flowchart of the approach used for incorporating different types of data in conjunction with methods in phylogenyreconstruction molecular dating and ancestral area reconstruction for inferring ancestral area chronograms and palaeobiogeo-graphic history

      Mammalian historical biogeography M S Springer et al 2479

      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

      dating analyses and ancestral area reconstructions canbe performed in parallel or in series and thenintegrated to yield an ancestral area chronogram(figure 1)

      3 MOLECULAR DATING ANALYSESMolecular clocks were introduced by Zuckerkandl ampPauling [7] but have fallen out of favour owing tothe prevalence of lineage-specific rate variation Theemergence of relaxed molecular clock methods haspromoted a resurgence of studies that have examinedboth interordinal and intraordinal divergence timesin Mammalia [8ndash23] Relaxed clock methods includepenalized likelihood approaches [2425] and BayesianMarkov chain Monte Carlo methods such as multidiv-time [26] BEAST [6] and mcmctree [27] It is useful tocompare both the results of different programs and theresults of the same program under different model andparameter settings [28ndash30]

      An important difference between BEASTand multi-divtime is that BEAST allows rates to vary randomlyover lineages in a phylogeny whereas multidivtimeassumes autocorrelated rates In simulation studiesBEAST performed poorly when rates were autocorre-lated whereas multidivtime performed poorly whenthere was uncorrelated rate variation [28] Giventhese results Battistuzzi et al [28] recommended com-posite 95 credibility intervals

      Relaxed clock methods allow for multiple calibra-tions including minimum and maximum constraintson individual nodes Multidivtime only allows forlsquohardrsquo constraints whereas BEAST and mcmctree pro-vide other options including lsquosoftrsquo constraints thatpermit specification of a given percentage (eg 95)of the normal distribution between the minimumand maximum with half of the remainder (eg25) allocated to each tail

      Phil Trans R Soc B (2011)

      4 ANCESTRAL AREA RECONSTRUCTIONMethods for reconstructing historical biogeographyinclude dispersalism phylogenetic biogeography pan-biogeography parsimony analysis of endemicity andcladistic biogeography [31] Early reconstructions ofmammalian historical biogeography were based on dis-persalism and land bridges [232] and pre-date thegeneral acceptance of plate tectonic theory Sub-sequently cladistic biogeography emphasized vicarianceas the most important factor in diversification bydiscovering dichotomous area relationships (area clado-grams) from taxon cladograms In response to thisparadigm which paid little regard to dispersal andextinction Ronquist [33] proposed dispersalndashvicarianceanalysis (DIVA) for reconstructing patterns of historicalbiogeography [34] DIVA infers ancestral areas by mini-mizing the number of dispersal and extinction eventsRecent methods that build on Ronquistrsquos work includeBayes-DIVA [35] and dispersalndashextinction cladogenesis(DEC) [3637]

      A fundamental issue in ancestral area reconstructionis area coding Areas are usually coded to include theentire geographical range of each species Other optionsinclude coding the entire area of the monophyletic cladethat is represented by the species or the geographicalarea of the oldest fossil belonging to each lineage Anadditional topic worthy of investigation is the problemof coding geographical areas for taxa from the geologicalpast versus the present given that areas as well as theirboundaries and physical relationships to each othercan fluctuate over time Parametric methods such asDEC which allow for changing dispersal probabilitiesover time provide a mechanism to accommodate theimpact of continental fragmentation and suturing on his-torical biogeography

      Three general approaches are available for codingareas (box 1) whether for living species fossils orlarger monophyletic groups The first method is

      Box 1 Methods for coding areas and analysing area-coded data matrices

      I Area coding1 single multi-state character coding Individual character states are non-overlapping and correspond to a single areadisadvantages ranges are limited to a single area (character state) unless they are coded as polymorphic2 binary character coding with multiple characters Each binary character corresponds to the presenceabsence of a taxonin a single areaadvantages allows for the occupation of multiple areasdisadvantages ancestral areas may receive no state assignments3 string character coding (frac14polymorphism coding)advantages individual character states may include one or more areasdisadvantages the number of character states becomes intractable when there are too many individual areas

      II Ancestral area reconstruction1 monomorphic ancestral area reconstruction methods These methods are used in conjunction with area data that havebeen coded as a single multi-state charactera Fitch parsimony (eg MACCLADE)b stochastic mapping (eg SIMMAP)advantages stochastic mapping allows for branch lengths and multiple treesdisadvantages methods in this category implicitly assume that different character states (areas) are homologous toeach other and attempt to find a single ancestral area (character state) at each node2 polymorphic ancestral area reconstruction methods These methods allow for ancestral areas that encompass more thanone area and employ either binary character data for multiple characters or string character dataa Fitch parsimony (eg MACCLADE) with multiple binary charactersb stochastic mapping (eg SIMMAP) with multiple binary charactersc dispersalndashvicariance (DIVA)d Bayes-DIVAe dispersalndashextinction cladogenesis (DEC)f minimum area change (MAC) parsimonyadvantages all methods in this category allow for reconstructions that include multiple areas per node Stochasticmapping and DEC incorporate branch lengths stochastic mapping and Bayes-DIVA allow for multiple treesdisadvantages methods that employ multiple binary characters can result in empty ancestral area reconstructionsFitch parsimony MAC parsimony and DIVA ignore branch length information DIVA Bayes-DIVA and DEC arebiased towards ancestral reconstructions that include numerous individual areas

      2480 M S Springer et al Mammalian historical biogeography

      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

      single character multi-state coding with non-overlap-ping character states The second method is binarycharacter coding with multiple characters whereeach character represents the presence or absence ofa taxon in a single area In contrast to the firstmethod this approach allows ancestral nodes toencompass more than one area Ancestral area recon-structions are simply the sum of the individual areareconstructions A disadvantage of this approach isthat ancestral areas may receive lsquono-statersquo assignmentswhich imply empty ancestral areas No-state assign-ments are an artefact of the character independenceassumption [38] Finally string character coding[37] allows individual character states to include oneor more geographical areas Specifically the geo-graphical range of a species is coded as a stringdenoting its presenceabsence in a set of individualareas Ree amp Smithrsquos [37] string character coding isequivalent to Maddison amp Maddisonrsquos [39] poly-morphism coding

      Ancestral reconstruction methods can be dividedinto parsimony versus Bayesianlikelihood approaches[40] Only the latter takes advantage of branch lengthsAnother useful distinction is between methods thatreconstruct ancestral nodes as monomorphic characterstates versus those that allow for range expansion andcontraction

      MP and ML methods employ discrete-state tran-sition models and reconstruct ancestral nodes asmonomorphic Monomorphic methods for character

      Phil Trans R Soc B (2011)

      state reconstruction assume that different characterstates are homologous to each other as is the casefor characters that pass Pattersonrsquos [41] conjunctiontest which states that two structures that are foundin the same organism cannot be homologous How-ever this test is nonsensical when applied togeographical areas because the presence of a speciesin one area does not rule out its presence in anotherarea

      Other ancestral range reconstruction methods havethe advantage of allowing for polymorphic ancestralstates and thereby accommodating range expansionand contraction (box 1) [40] Polymorphic reconstruc-tions can be achieved using (i) monomorphic methodswith multiple binary characters each of which codesfor the presenceabsence of a taxon in one area and(ii) polymorphic methods that allow ancestral nodesto include one or more areas

      Fitch parsimony and stochastic mapping can beused to reconstruct ancestral nodes for multiplebinary characters and then summed over all characterreconstructions to obtain the complete set of areas foreach ancestral node One difficulty is ancestral nodeswith no-state assignments In these instances multipleinterpretations are possible including vicariance of anancestral area that was not included in the originalanalysis If there is geological evidence for formerlycontiguous areas this information may be incorpor-ated into ancillary characters to assist ancestral areareconstructions

      A B C D E F G H I J K L M N O A mdash 2 2 2 1 1 1 3 3 3 2 2 2 4 3 B 2 mdash 2 2 1 3 3 1 1 3 2 2 4 2 3 C 2 2 mdash 2 3 1 3 1 3 1 2 4 2 2 3 D 2 2 2 mdash 3 3 1 3 1 1 4 2 2 2 3 E 1 1 3 3 mdash 2 2 2 2 4 1 1 3 3 2 F 1 3 1 3 2 mdash 2 2 4 2 1 3 1 3 2 G 1 3 3 1 2 2 mdash 4 2 2 3 1 1 3 2 H 3 1 1 3 2 2 4 mdash 2 2 1 3 3 1 2 I 3 1 3 1 2 4 2 2 mdash 2 3 1 3 1 2 J 3 3 1 1 4 2 2 2 2 mdash 3 3 1 1 2 K 2 2 2 4 1 1 3 1 3 3 mdash 2 2 2 1 L 2 2 4 2 1 3 1 3 1 3 2 mdash 2 2 1 M 2 4 2 2 3 1 1 3 3 1 2 2 mdash 2 1 N 4 2 2 2 3 3 3 1 1 1 2 2 2 mdash 1 O 3 3 3 3 2 2 2 2 2 2 1 1 1 1 mdash

      A = Africa B = Eurasia C = North America D = South America E = Africa + Eurasia F = Africa + North America G = Africa + South America H = Eurasia + North America I = Eurasia + South America

      J = North America + South America

      K = Africa + Eurasia + North America

      L = Africa + Eurasia + South America

      M = Africa + North America + South America

      N = Eurasia + North America + South America

      O = Africa + Eurasia + North America + South America

      Figure 2 Example of a step matrix for minimum area change (MAC) parsimony MAC parsimony assigns equal cost to allgains and losses of an area For example a change in area from A (Africa) to G (Africa thorn South America) requires onestep (gain South America) whereas a change from A to H (Eurasia thornNorth America) requires three steps (Africa loss Eurasiagain North America gain) The step matrix is fully symmetrical

      Mammalian historical biogeography M S Springer et al 2481

      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

      In contrast to methods that were co-opted fromphylogenetics DIVA [33] and DEC [363742] weredeveloped explicitly for historical biogeographicreconstruction DIVA assigns no cost to widespreadancestral areas that are subdivided by vicariance butassigns a cost to dispersal and local extinctionevents DIVA ignores branch lengths DEC uses a con-tinuous time model for geographical range evolutionand employs string character coding to accommodatepolymorphic areas DEC permits range expansionthrough dispersal events and range contractionthrough local extinction events DEC also allowsareas of implausible distribution to be excludedsuch as those that are geographically discontinuous[43] DIVA and DEC are prone to reconstructingancestral areas that include too many individualareas especially towards the root of the tree Howeverboth programmes have options for limiting thenumber of ancestral areas

      An additional approach that we introduce is mini-mum area change (MAC) parsimony which usespolymorphic character coding [39] and Sankoff optim-ization and can be implemented with MESQUITE [44]MAC parsimony requires a step matrix (figure 2) Incontrast to DIVA MAC parsimony assigns equal costto all gains and losses of an area whether through dis-persal local extinction or vicariance An advantage ofthis approach is that it should be less prone than DIVAto reconstructing ancestral areas that are too broadrelative to terminal taxa

      Another recent approach that builds on earlier cla-distic biogeography methods is phylogenetic analysisof comparing trees (PACT) [45ndash47] Unlike earlier

      Phil Trans R Soc B (2011)

      cladistic biogeography methods PACT explicitlyincorporates molecular dates into general areacladograms

      5 ANCESTRAL AREA CHRONOGRAMS ANDPALAEOGEOGRAPHYAncestral area chronograms are similar to ancestral areacladograms but additionally incorporate temporal infor-mation into their framework Alternate approaches forreconstructing phylogeny estimating divergence timesand reconstructing ancestral areas may yield differentancestral area chronograms each of which may beinterpreted in the context of geology-based palaeogeogra-phical hypotheses (figure 1) Ancestral area chronogramsin conjunction with geology-based palaeogeographicalreconstructions provide a framework for proposingtesting and refining palaeobiogeographic hypothesesAncestral area chronograms when interpreted in thecontext of palaeogeographical hypothesis yield insightsinto dispersal vicariance and area extinctions all ofwhich are incorporated into palaeobiogeographichypotheses (figure 1)

      Ancestral area chronograms are taxon-specific butancestral area chronograms for multiple taxa that co-occur in the same region can yield general area chron-ograms General area chronograms are similar togeneral area cladograms but include temporal infor-mation that is absent from general area cladogramsThe fundamental idea behind cladistic biogeographyis that broad patterns which are revealed through gen-eral area cladograms demand comprehensive causalexplanations However general area cladograms

      2482 M S Springer et al Mammalian historical biogeography

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      ignore temporal information and may result frompseudo-congruence when taxonomic groups with thesame area relationships have different divergencetimes and presumably different underlying causes[48] Temporal information is critical for discriminat-ing between groups that diversified during the sametime period and therefore may have experienced thesame causal events and groups that diversifiedduring different time periods and require differentcausal explanations [48]

      Just as there may be multiple ancestral area chro-nograms for a taxonomic group there may also bemultiple palaeogeographical hypotheses regarding thehistory of connections of formerly connected land-masses For example the lsquopan-Gondwananrsquo andlsquoAfrica-firstrsquo hypotheses represent alternate scenariosfor the breakup of Gondwana [49] Both hypothesesagree that the initial rift was between the African com-ponent of West Gondwana (Africa South America)and the Indo-Madagascar component of EastGondwana although connections between Africa andIndo-Madagascar were maintained via South Amer-icandashAntarctica Subsequent to this initial rift the pan-Gondwanan hypothesis [50] postulates that three vicar-iant separations South America from Africa SouthAmerica from Antarctica and Antarctica from Indo-Madagascar all occurred during a narrow timewindow (100ndash90 Ma) The Africa-first hypothesis inturn suggests that Africa was the first Gondwanan con-tinent to become completely separated from otherGondwanan landmasses when it separated fromSouth America by approximately 100 Ma Indo-Mada-gascar separated from AntarcticandashAustralia atapproximately 130ndash110 Ma but maintained subaerialconnections with Antarctica via the Kerguelen Plateauand possibly the Gunnerus Ridge to the west well intothe Late Cretaceous (approx 80 Ma) The final separ-ation was between the Antarctica Peninsula and the tipof South America in the Eocene

      Krause et al [49] compared Cretaceous vertebratefaunas from different Gondwanan landmasses and con-cluded that palaeontological data are most compatiblewith a modified version of the Africa-first hypothesisKrause et alrsquos [49] work also illustrates how biogeographichypotheses based on fossils can be compared withgeology-based palaeogeographical hypotheses in anarena that allows for reciprocal illumination Thus ances-tral and general area chronograms provide a frameworkfor evaluating competing geology-based palaeogeo-graphical reconstructions just as geology-basedpalaeogeographical reconstructions provide a frameworkfor evaluating alternate ancestral area chronograms(figure 1) Krause et al [49] noted that there is no apriori reason to assume that geological data trumppalaeontological data or vice versa insofar as each typeof data can be used to reveal large-scale biogeographicpatterns

      6 PLACENTAL PHYLOGENY AND ACOMPARISON OF DIFFERENT ANCESTRALAREA RECONSTRUCTION METHODSMost placental orders have first fossil occurrences andprobable origins in Laurasia but there are also orders

      Phil Trans R Soc B (2011)

      with Gondwanan origins based on first fossil occur-rences in South America (Xenarthra) or Africa (mostafrotherian orders) Traditional morphologicalphylogenies [5152] have suggested close relationshipsbetween Laurasian and Gondwanan orders egEdentata (Xenarthra (Gondwanan) thorn Pholidota(Laurasian)) By contrast molecular phylogenies haverecovered three superordinal groups AfrotheriaLaurasiatheria and Euarchontoglires [353ndash63] thatwere not recovered on morphological trees Thesethree groups plus Xenarthra comprise the four majorclades of placental mammals There is also robust mol-ecular support for Boreoeutheria (EuarchontogliresthornLaurasiatheria) [60ndash6264] This overhaul of placentalphylogeny in conjunction with the results of moleculardating analyses laid the foundation for newbiogeographic hypotheses We discuss these in sect7 afterfirst comparing the results of different ancestralarea reconstruction methods in the remainder ofthis section

      Ancestral area chronograms were reconstructed for43 fully terrestrial placental taxa from Springer et al[3] Chiropterans and fully aquatic forms wereexcluded because of their different modes of dispersal(ie flight swimming) and also because most fullyaquatic taxa inhabit areas (ie oceans) that are notcontained in the four-area scheme used in our analyses(see below) Ancestral area chronograms were recon-structed using a ML phylogram obtained withRAXML [65] molecular divergence dates estimatedwith BEAST [6] and ancestral areas reconstructedwith a variety of methods

      Four areas (Africa Eurasia North America andSouth America) were recognized and two methodswere used to code areas for terminal taxa Firstareas were coded based on the geographical ranges ofextant species Second areas were coded based onthe geographical provenance of the oldest fossil foreach lineage The step matrix that was used in MACparsimony analysis is shown in figure 2 Given thatthe number of character states that are chosen for geo-graphical range subdivision is arbitrary it may beinstructive to compare the results of analyses withcoarser (eg Gondwana versus Laurasia) and finer(eg Europe and Asia instead of Eurasia) scales forarea coding although the analyses reported here areconfined to the four areas listed above

      We reconstructed ancestral areas using ninemethods (i) MAC parsimony (ii) Fitch parsimonywith multiple binary characters (FP-MBC) (iii) Fitchparsimony with a single multi-state character (FP-SMC) (iv) DIVA with no constraints on the maximumnumber of areas per node (v) DIVA with a maximumof two areas per node (DIVA-2) (vi) DEC with no con-straints on the maximum number of areas per node(vii) DEC with a maximum of two areas per node(DEC-2) (viii) stochastic mapping with multiplebinary characters (SM-MBC) and (ix) stochastic map-ping with a single multi-state character (SM-SMC)Ancestral area chronograms (MAC parsimony) basedon the geographical ranges of extant species and fossillineages are shown in figures 3 and 4 respectivelyTables 3 and 4 summarize the results of analyses withall nine methods

      0204060

      NeogeneQuaternary

      CenozoicPaleogene

      Ma

      Upper Miocene PP

      80

      Paleoc

      100

      OligEoceneCretaceousMesozoic

      Choloepus

      Tamandua

      MyrmecophagaEuphractus

      Chaetophractus

      Erinaceus

      Talpa

      Sorex

      Echinops

      Amblysomus

      Procavia

      Loxodonta

      MacroscelidesElephantulus

      Orycteropus

      Tamias

      Muscardinus

      Mus

      Rattus

      PedetesHystrix

      Castor

      Dipodomys

      CaviaHydrochaeris

      Erethizon

      SylvilagusOchotona

      Cynocephalus

      TupaiaLemur

      Homo

      Tarsius

      Hippopotamus

      Lama

      Tragelaphus

      Sus

      Equus

      Ceratotherium

      TapirusFelis

      Canis

      Manis

      Africa

      South America

      Eurasia

      North America

      Africa + EurasiaAfrica + North America

      1

      23

      4

      56

      7

      16

      17

      1819

      20

      2122

      23

      12

      13

      14

      15

      8

      9

      1011

      31

      32

      33

      34

      35

      36

      3738

      28

      2930

      2425

      26

      27

      4239

      41

      40

      Figure 3 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on extant ranges forterminal taxa RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times MAC parsi-mony was used to infer ancestral areas with the step matrix in figure 2 We employed soft constraints (nodes 3 8 10 16 19

      21 32 34 36 38 41) that followed a normal distribution with 95 of the normal distribution between the specified mini-mum and maximum constraints (table 1) Areas for extant taxa are enumerated in table 2 and are colour-coded as followsAfrica blue Eurasia green North America brown South America red Multi-coloured names denote taxa that occur inmore than one area (table 2) Nodes with unambiguous ancestral area reconstructions are shown with a single colouredcircle nodes with ambiguous reconstructions are shown with two or more circles and each coloured circle corresponds to

      a different reconstruction

      Mammalian historical biogeography M S Springer et al 2483

      Phil Trans R Soc B (2011)

      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

      Table 1 Fossil constraints Minimum ages are based on the age of the oldest unequivocal fossils belonging to the clade

      Maximum ages are based on the maximum of stratigraphic bounding [66] phylogenetic bracketing [6768] and phylogeneticuncertainty Stratigraphic bounding encompassed two successive underlying fossil-bearing deposits that did not contain anyfossils from the lineage of interest phylogenetic bracketing encompassed the age of the oldest fossils that were up to twonodes below the divergence event and phylogenetic bracketing allowed for the possibility that taxa of uncertain phylogeneticaffinities belong to the crown clade first outgroup or second outgroup Dates used in stratigraphic bounding are from

      Gradstein et al [69] We recognized the following chronological units in succession from youngest to oldest PleistocenePliocene Late Miocene Middle Miocene Early Miocene Late Oligocene Early Oligocene Late Eocene Middle EoceneEarly Eocene Late Palaeocene Middle Palaeocene Early Palaeocene Maastrichtian and Campanian

      node numbera

      fossil constraints (Ma)

      oldest fossil for minimum reference(s)minimum maximum

      3 556 712 Eritherium [70]8 585 712 Riostegotherium [6671]

      10 338 655 Antarctic specimenb [7273]16 611 842 Adunator [74]19 371 658 Hesperocyon gregarious [75ndash77]21 555 611 Hyracotherium [78]

      32 484 611 leporid tarsals [79]34 484 611 Eogliravus [80]36 338 56 Gaudeamus [8182]38 118 34 Prodolichotis [83]41 524 611 Mattimys [84]

      aNode numbers refer to figures 3 and 4bThe Eocene Antarctic specimen is an ungual phalanx that Carlini et al [72] identified as a megatheroid sloth Marenssi et al [85] revisedthe identification of the phalanx to include either Tardigrada (sloths) or Vermilingua (anteaters) Subsequently Vizcaıno amp Scillato-Yane[73] described a fragmentary tooth from the Eocene of Antarctica and referred this tooth to Tardigrada but MacPhee amp Reguero [86]reinterpreted this tooth fragment as Mammalia incertae sedis based on histological evidence

      2484 M S Springer et al Mammalian historical biogeography

      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

      Ambiguous ancestral area reconstructions were aproblem for all methods and the number of nodeswith equivocal reconstructions ranged from four(SM-SMC with extant coding) to 26 (DEC-2 withextant coding) For some methods the number ofambiguous nodes was higher with extant coding thanwith fossil coding (FP-MBC FP-SMC MAC parsi-mony DIVA DIVA-2 DEC DEC-2) but in othercases this pattern was reversed (SM-MBC SM-SMC) Ancestral areas for Placentalia Exafroplacenta-lia (frac14Boreoeutheria thorn Xenarthra) and several nodeswithin Rodentia were reconstructed as ambiguous bynearly all methods Other nodes were consistentlyreconstructed with unambiguous ancestral areasincluding clades with ancestral areas in Africa(Afrotheria and its internal nodes) Eurasia (Euarch-onta Paraprimates [frac14Dermoptera thorn Scandentia]Muridae) North America (Erinaceidae thorn Soricidae)and South America (Xenarthra and its internalnodes Cavioidea) Most analyses reconstructedEurasia as the ancestral area for BoreoeutheriaLaurasiatheria and Euarchontoglires This finding isdiscussed below

      The importance of fossils is illustrated by recon-structions for Lagomorpha (tables 3 and 4) Allmethods returned North America as the ancestralarea when extant taxa were used for area coding butidentified Eurasia with fossil coding

      DIVA and DEC analyses reconstructed more nodeswith multiple areas than did the other methodsAnalyses with DEC reconstructed 17ndash20 nodes withtwo or more areas and four to six nodes with threeor more areas DIVA analyses resulted in 15ndash18

      Phil Trans R Soc B (2011)

      nodes with at least two areas and five to six nodeswith three or more areas None of the other methodsreconstructed ancestral nodes to include three ormore areas in a single reconstruction although threeor four areas were sometimes represented by thefull complement of alternate reconstructions for agiven node

      FP-MBC returned nine empty nodes with extantcoding and five empty areas with fossil coding SM-MBC with extant coding resulted in three or fourempty nodes with extant coding and four emptynodes with extinct coding (table 5)

      7 PLACENTAL BIOGEOGRAPHYAfrotheria (Afrosoricida Hyracoidea MacroscelideaProboscidea Sirenia Tubulidentata) was the first ofthe new superordinal groups to receive robust molecu-lar support [535556] With the exception of Sireniaall afrotherian orders have first fossil occurrences inAfrica and two orders (Macroscelidea Afrosoricida)have evolutionary histories that are restricted to theAfro-Malagasy region Springer et al [53] suggestedthat interordinal separation of afrotherian orders com-menced during a window of isolation that began in theCretaceous after Africa separated from South Amer-ica and lasted until the early Cenozoic when Africadocked with Europe Consistent with this scenarioAfrica was unambiguously reconstructed as the ances-tral area for Afrotheria (figures 3 and 4) Thishypothesis contrasts with traditional views whereinthe African mammal fauna arrived from the northincluding a condylarth stock that arrived in Africa

      Table 2 Geographical area of extant taxa and oldest fossils used in ancestral area reconstruction

      taxona area of extant species area of oldest fossilb

      Choloepus didactylus SA SA Megalonychidae Miocene [87]Tamandua tetradactyla SA SA Tamandua Pleistocene [87]

      Myrmecophaga tridactyla SA SA Neotamandua Miocene [8788]Euphractus sexcinctus SA SA Zaedyus Pliocene [8789]Chaetophractus villosus SA SA Chaetophractus Pliocene [90]Erinaceus europaeus Eurasia NA Adunator Palaeocene [74]Talpa altaica Eurasia Eurasia Eotalpa Eocene [91]

      Sorex araneus Eurasia NA Domnina Eocene [92]Echinops telfairi Africa Africa Widanelfarasia Eocene [93]Amblysomus hottentotus Africa Africa Eochrysochloris Oligocene [93]Procavia capensis Africa Africa Seggeurius Eocene [94]

      Loxodonta africana Africa Africa Eritherium Palaeocene [70]Macroscelides proboscideus Africa Africa Macroscelides Pliocene [95]Elephantulus rufescens Africa Africa Elephantulus Pliocene [95]Orycteropus afer Africa Africa Orycteropus Miocene [96]Tamias striatus NA NA Spurimus Eocene [97]

      Muscardinus avellanarius Eurasia Eurasia Eogliravus Eocene [80]Mus musculus Eurasia Eurasia Progonomys Miocene [74]Rattus norvegicus Eurasia Eurasia Karnimata Miocene [74]Pedetes capensis Africa Africa Pondaungimys Eocene [98]Hystrix brachyurus Eurasia Africa Gaudeamus Eocene [81]

      Castor canadensis NA NA Mattimys Eocene [84]Dipodomys merriami NA NA Proheteromys Oligocene [99]Cavia porcellus SA SA Prodolichotis Miocene [83100]Hydrochaeris hydrochaeris SA SA Cardiatherium Miocene [101]Erethizon dorsatum NA SA Eopululo Eocene [102]

      Sylvilagus floridanus NA SA Eurasia tarsal elements Eocene [79]Ochotona princeps NA Eurasia Sinolagomys Oligocene [103104]Cynocephalus variegatus Eurasia Eurasia Dermotherium Eocene [105]Tupaia minor Eurasia Eurasia Eodendrogale Eocene [106]Lemur catta Africa Africa Pachylemur Quaternary [107]

      Homo sapiens Eurasia NA SA Africa Eurasia Anthrasimias Palaeocene [108]Tarsius syrichta Eurasia Eurasia Tarsius Eocene [109]Hippopotamus amphibius Africa Africa Morotochoerus Miocene [110]Lama glama SA NA Poebrodon Eocene [111]

      Tragelaphus eurycerus Africa Eurasia Archaeomeryx Eocene [112]Sus scrofa Eurasia Africa Eurasia Eocenchoerus Eocene [113]Equus caballus Eurasia Eurasia NA Hyracotherium Eocene [78114115]Ceratotherium simum Africa NA Hyracodontidae Eocene [116]Tapirus indicus Eurasia NA Helaletes Eocene [117]

      Felis catus Africa Eurasia Stenoplesictis Eocene [118119]Canis familiaris Eurasia NA Hesperocyon Eocene [120]Manis pentadactyla Eurasia Eurasia Eomanis Eocene [121]

      aIn cases of chimeric taxa we used the most common species from Springer et alrsquos [3] concatenated supermatrix NA North AmericaSA South AmericabArea of the oldest stem fossil belonging to the terminal branch represented by each living taxon

      Mammalian historical biogeography M S Springer et al 2485

      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

      from Europe in the early Cenozoic and insectivoresthat arrived in the Neogene [124]

      Asher et al [125] Zack et al [126] and Tabuce et al[127] suggested that the geographical distributions ofliving afrotherians are not representative of the histori-cal geographical distribution of this clade and thatAfrotheria is Holarctic in origin based on the place-ment of extinct taxa from the Palaeocene of Laurasiawithin or at the base of Afrotheria However pseu-doextinction tests call into question the reliability ofthe placement of fossil taxa in morphological cladisticanalyses [3]

      The oldest xenarthran fossils are scutes from thePalaeocene of South America [71] Living membersof Xenarthra (anteaters sloths armadillos) are

      Phil Trans R Soc B (2011)

      restricted to South and Central America with theexception of the nine-banded armadillo whose ances-tors dispersed to North America during the GreatAmerican Interchange [128] Simpson [129130] sup-ported the view that South American xenarthransevolved in situ during South Americarsquos isolation fromother continents in the early Tertiary All of our ana-lyses are consistent with the hypothesis that SouthAmerica was the ancestral area for Xenarthra (figures3 and 4)

      The remaining placental orders are placed in Laur-asiatheria (Eulipotyphla Chiroptera PerissodactylaCetartiodactyla Carnivora Pholidota) and Euarchon-toglires (Primates Dermoptera Scandentia RodentiaLagomorpha) With the exception of bats these orders

      0204060

      NeogeneQuaternary

      Cenozoic

      Paleogene

      Ma

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      80

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      100

      OligEoceneCretaceousMesozoic

      Choloepus

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      1

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      31

      32

      33

      34

      35

      36

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      28

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      Figure 4 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on the oldest fossil foreach lineage RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times and MAC par-simony was used to infer ancestral areas with the step matrix in figure 2 Areas for the oldest fossil lineage are enumerated intable 2 and are colour-coded as follows Africa blue Eurasia green North America brown South America red Nodes with

      unambiguous ancestral area reconstructions are shown with a single coloured circle nodes with ambiguous reconstructions areshown with two or more circles and each coloured circle corresponds to a different reconstruction

      2486 M S Springer et al Mammalian historical biogeography

      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

      have first fossil occurrences that are exclusively Laura-sian Our reconstructions provide support for Eurasiabut not North America as the ancestral area for theseclades (figures 3 and 4) These results are consistent

      Phil Trans R Soc B (2011)

      with previous suggestions that Cretaceous zhelestidsand zamlambdalestids from Asia are members ofcrown Placentalia [131132] Further the fossilrecord suggests that Eutheria were dominant in

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      Mammalian historical biogeography M S Springer et al 2487

      Phil Trans R Soc B (2011)

      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

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      (Con

      tinued

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      Mammalian historical biogeography M S Springer et al 2489

      Phil Trans R Soc B (2011)

      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

      Tab

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      2490 M S Springer et al Mammalian historical biogeography

      Phil Trans R Soc B (2011)

      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

      Table 5 Comparison of different methods for reconstructing ancestral areas NA1 not applicable for monomorphic

      reconstruction methods NA2 not applicable when the maximum number of areas is set at two NA2 not applicable formethods that employ single multistate charactersa

      FP-MBC FP-SMCMACParsimony DIVA DIVA-2 DEC DEC-2 SM-MBC SM-SMC

      nodes with ambiguous 75 129 128 1211 107 2323 2623 1617 614reconstructionsb 1920 1718 1012 410

      nodes with 2 areasc 33 NA1 46 1618 1516 1820 2019 77 NA11720 1717 46

      nodes with 3 areasd 00 NA1 00 65 NA2 66 NA2 00 NA145 00

      empty nodese 95 NA3 NA3 NA3 NA3 NA3 NA3 34 NA344

      aNumbers before slashes are based on analyses with area coding for extant taxa and numbers after slashes are based on analyses with areacoding for the oldest fossil See table 3 for abbreviationsbFor FP-MBC nodes were considered ambiguous if at least one area was reconstructed as (01) For SM-MBC and SM-SMC nodes wereconsidered ambiguous if the posterior probability (PP) of at least one area was 01 PP 09 (top line) or 02 PP 08 (bottom line)For DEC and DEC-2 nodes were considered ambiguous if the frequency ( f ) of at least one area was 01 f 09 (top line) or 02 p 08 (bottom line)cAt least two areas in at least one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) was takento include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line) or020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02 (bottomline)dAt least three areas in more than one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) wastaken to include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line)or 020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02(bottom line)eFor FP-MBC nodes were considered empty if all areas were reconstructed as 0 For SM-MBC nodes were considered empty if posteriorprobabilities were 010 (top line) or 020 (bottom line) for all four areas

      Mammalian historical biogeography M S Springer et al 2491

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      Eurasia throughout the Cretaceous but were absentfrom North America through much of the Late Cre-taceous and only attained appreciable diversity thereduring the last approximately 10 Myr of the period[133134] Boyer et al [135] concluded that theIndian subcontinent Eurasia and Africa are morelikely places of origin for Euarchonta than is NorthAmerica This agrees with our ancestral areareconstructions (figures 3 4 and tables 3 4)

      Although there is robust support for the monophylyof Xenarthra Afrotheria and Boreoeutheria relation-ships among these three groups and the root of theplacental tree remain contentious [105460ndash63136]Murphy et al [62] and Springer et al [10] suggested acausal relationship between the sundering of Africa andSouth America and basal cladogenesis among crown-group placental mammals given the coincidence ofmolecular dates for the base of placentals and thevicariant separation of Africa and South Americaapproximately 100ndash120 Ma

      Asher et al [125] analysed a combined matrix andrecovered Afrotheria in a nested position within Pla-centalia which contradicts the hypothesis that theplate tectonic separation of Africa and South Americaplayed a causal role in the early cladogenesis of placen-tal mammals However the nested position forAfrotheria resulted from the paraphyly of Euarchonto-glires Glires and Rodentia Rare genomic changesconfirm the monophyly of Xenarthra [137] Afrotheria[138ndash142] Euarchontoglires [139141142] Laura-siatheria [139141142] and Boreoeutheria[139141142] and preclude a nested position forAfrotheria in the placental tree

      Rare genomic changes have also been used toexamine the position of the placental root Kriegs

      Phil Trans R Soc B (2011)

      et al [139] reported LINE insertions that are sharedby Epitheria whereas Murphy et al [16] discoveredrare genomic changes that support AtlantogenataNishihara et al [142] performed genome-wide retro-poson analyses and found 22 25 and 21 LINEinsertions for Exafroplacentalia Epitheria and Atlan-togenata respectively Based on these resultsNishihara et al [142] concluded that XenarthraAfrotheria and Boreoeutheria diverged from oneanother nearly simultaneously They also suggested anew palaeogeographical model for the breakup of Pan-gaea and Gondwana in which Africa becomes isolatedfrom both South America and Laurasia at approxi-mately 120 Ma and argued that these coeval platetectonic events provide an explanation for the simul-taneous divergence of Afrotheria Xenarthra andBoreoeutheria However relaxed clock dates for thebase of Placentalia are closer to 100 Ma than to120 Ma (figures 3 and 4) A second difficulty concernsthe opening of the South Atlantic Nishihara et al[142] suggested that the Brazilian Bridge which rep-resented the last connection between Africa andSouth America was severed at approximately120 Mya but other recent reconstructions suggestthat the connection between the South Atlantic andCentral Atlantic was not established until lateAptianmid-Albian times (approx 110ndash100 Ma)[143144]

      8 THE IMPORTANCE OF DISPERSALIn the context of pre-plate tectonic views of theEarth Simpson [2] proposed three types ofmigration routes to describe the movement of ani-mals corridors filter bridges and sweepstakes

      Africa

      Mad

      agas

      car

      Tanzania

      Mozambique

      N

      100 mi

      Figure 5 Present day surface ocean currents in the Mozam-bique Channel (solid arrows) are southndashsouthwest andwould not have facilitated west to east transoceanic dispersalfrom Africa to Madagascar [153] By contrast westerly sur-face ocean currents in the Eocene (dashed arrows) would

      have facilitated dispersal across the Mozambique Channelfrom Africa to Madagascar especially during tropicalstorms [154] The outline of Madagascar with dashed linesshows its approximate position relative to Africa during theEocene

      2492 M S Springer et al Mammalian historical biogeography

      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

      dispersal Corridors connect two areas and are per-meable to all animals filter bridges impose selectivebarriers that affect some but not all animals andsweepstakes dispersal is required when there arestrong barriers to migration such as high mountainbarriers or oceans

      Simpson [2] suggested that Madagascarrsquos livingmammals were the product of sweepstakes dispersalfrom Africa to Madagascar Sweepstakes dispersalhypotheses fell out of favour with the validation ofplate tectonic theory and were summarily dismissedas lsquomiraculousrsquo hypotheses with no scientific basis[145] However it has become apparent that some dis-tributional patterns can only be explained bysweepstakes dispersal [146] Observational data alsoprovide support for long-distance vertebrate dispersal[147] Examples of low probability sweepstakes disper-sal involving mammals include the origins of theendemic mammal fauna in Madagascar and theoccurrence of caviomorph rodents and platyrrhine pri-mates in South America

      Madagascarrsquos strictly terrestrial extant mammal faunaincludes endemic lineages from four placental orderstenrecs (Afrosoricida) euplerids (Carnivora) neso-myines (Rodentia) and lemurs (Primates) In eachlineage Madagascar endemics comprise monophyleticassemblages with closest living relatives in Africa[148149] Madagascar separated from Africa approxi-mately 165 Ma but maintained its connection withAntarctica via the Kerguelen Plateau until as late as80 Ma at which time it became permanentlyseparated from other Gondwanan landmasses This his-tory suggests that Madagascarrsquos terrestrial endemicmammals are either the ancient descendants of vicariantevents that occurred prior to 80 Ma or reached Mada-gascar via transoceanic sweepstakes dispersal at a latertime Another possibility is that a land bridge connectedAfrica and Madagascar between 45 and 26 Ma [150]

      Molecular divergence dates suggest that all fourendemic lineages last shared a common ancestorwith their African sister group in the Cenozoic[148149151152] Poux et al [148] concluded thatdispersal by lemurs rodents and carnivorans musthave occurred by transoceanic dispersal rather thanland bridge dispersal based on molecular dates forthe colonization of Madagascar that were outside ofthe land bridge window ie 60ndash50 Ma for lemurs26ndash19 Ma for carnivorans and 24ndash20 Ma for rodentsHowever present ocean currents allow for dispersalfrom Madagascar to Africa but oppose reciprocal dis-persal from Africa to Madagascar across theMozambique Channel If ocean currents were thesame for most of the Cenozoic as they are todaythey would not have facilitated west to east transocea-nic dispersal across the Mozambique Channel becauseof the strong southndashsouthwest flow of the Mozambi-que Current [153]

      Ali amp Huber [154] addressed this problem by simu-lating surface ocean currents in the Indian Oceanduring the Eocene They concluded that large-scaleocean current systems in the Eocene were profoundlydifferent from modern observed circulatory patternsand that the flow along the African coast was eastwardtowards Madagascar instead of southward through the

      Phil Trans R Soc B (2011)

      Mozambique Channel (figure 5) Ali amp Huber [154]further suggested that dispersal probabilities wereenhanced by tropical storms that (i) generated largefloating tree islands that would have allowed for asuccessful oceanic voyage and (ii) acceleratedtransportation rates from Africa to Madagascar thatwould have allowed for complete crossing of theMozambique Channel in 25ndash30 days

      The dispersal of four groups of fully terrestrialmammals from Africa to Madagascar at a time whenthere was no land bridge is a testament to the impor-tance of rare sweepstakes events in the evolutionaryhistory of Placentalia Even more remarkable is theoccurrence of two different groups of placental mam-mals hystricognath rodents and anthropoid primatesin Africa and South America

      Hystricognathi includes Hystricidae (Old World por-cupines) and Phiomorpha (eg cane rats dassie rats)from the Old World and Caviomorpha (eg porcupineschinchillas) from the New World The oldest hystricog-naths are from the late Eocene Egypt and have beendated at approximately 37 Ma [81] Old World hystri-cognaths are paraphyletic usually with phiomorphshaving closer phylogenetic affinities to South Americancaviomorphs than to hystricids [14155156] Relaxedclock dates suggest that South American caviomorphslast shared a common ancestor with phiomorphsbetween 45 and 36 Ma [81155157] The most recentcommon ancestor of Caviomorpha has been dated at45ndash31 Ma [81155157158]

      PacificOcean

      NorthAtlanticOcean

      SouthAtlantic Ocean

      IndianOcean

      NorthAmerica

      SouthAmerica

      Africa

      Antarctica

      Australia

      Asia

      Europe

      PacificOcean1b

      1b

      1a3

      2

      Middle Eocene

      Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

      South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

      Mammalian historical biogeography M S Springer et al 2493

      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

      Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

      The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

      Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

      Phil Trans R Soc B (2011)

      phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

      9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

      The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

      Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

      or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

      node number (figure 7) Eick et al [12] re-analysis

      1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

      ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

      3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

      4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

      9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

      10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

      11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

      12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

      ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

      13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

      ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

      BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

      14 A A B C AC BC ABC15 A A B C AC BC

      16 A A B C17 A A B AC BC ABC

      2494 M S Springer et al Mammalian historical biogeography

      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

      and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

      We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

      Phil Trans R Soc B (2011)

      Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

      FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

      1

      2

      3

      4

      56

      7

      8

      9

      10

      11

      1213

      14

      1516

      17

      EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

      Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

      Mammalian historical biogeography M S Springer et al 2495

      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

      with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

      10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

      In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

      Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

      Phil Trans R Soc B (2011)

      sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

      In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

      11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

      In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

      With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

      12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

      2496 M S Springer et al Mammalian historical biogeography

      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

      together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

      MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

      REFERENCES1 Jones K E amp Safi K 2011 Ecology and evolution of

      mammalian biodiversity Phil Trans R Soc B 366

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      J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

      Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

      4 Springer M S Meredith R W Eizirik E Teeling

      E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

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      8 Douady C J amp Douzery E J P 2003 Molecular esti-mation of eulipotyphlan divergence times and theevolution of lsquoInsectivorarsquo Mol Phylogenet Evol 28285ndash296 (doi101016S1055-7903(03)00119-2)

      9 Douady C J Catzeflis F Raman J Springer M S

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      0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

      S J 2003 Placental mammal diversification and theCretaceousndashTertiary boundary Proc Natl Acad SciUSA 100 1056ndash1061 (doi101073pnas0334222

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      Phil Trans R Soc B (2011)

      12 Eick G N Jacobs D S amp Matthee C A 2005 Anuclear DNA phylogenetic perspective on the evolutionof echolocation and historical biogeography of extant

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      13 Teeling E C Springer M S Madsen O Bates POrsquoBrien S J amp Murphy W J 2005 A molecular phy-logeny for bats illuminates biogeography and the fossil

      record Science 307 580ndash584 (doi101126science1105113)

      14 Huchon D Chevret P Jordan U Kilpatrick C WRanwez V Jenkins P D Brosius J amp Schmitz J

      2007 Multiple molecular evidences for a living mamma-lian fossil Proc Natl Acad Sci USA 104 7495ndash7499(doi101073pnas0701289104)

      15 Janecka J E Miller W Pringle T H Wiens FZitzmann A Helgen K M Springer M S amp

      Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

      16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

      the root of the placental mammal tree Genome Res 17413ndash421 (doi101101gr5918807)

      17 Beck R M 2008 A dated phylogeny of marsupialsusing a molecular supermatrix and multiple fossil con-straints J Mammal 89 175ndash189 (doi10164406-

      MAMM-A-4371)18 Meredith R W Westerman M amp Springer M S

      2008 A timescale and phylogeny for lsquobandicootsrsquo (Pera-melemorphia Marsupialia) based on sequences for five

      nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

      19 Meredith R W Westerman M amp Springer M S2008 Phylogeny and timescale for the living genera ofkangaroos and kin (Macropodiformes Marsupialia)

      based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

      20 Meredith R W Westerman M amp Springer M S 2009A phylogeny of Diprotodontia (Marsupialia) based onsequences for five nuclear genes Mol Phylogenet Evol51 554ndash571 (doi101016jympev200902009)

      21 Meredith R W Krajewski C Westerman W ampSpringer M S 2009 Relationships and divergencetimes among the orders and families of marsupialsMus N Ariz Bull 65 383ndash406

      22 Chatterjee H J Ho S W Y Barnes I amp Groves C2009 Estimating the phylogeny and divergence times ofprimates using a supermatrix approach BMC EvolBiol 9 259 (doi1011861471-2148-9-259)

      23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

      (doi101016jympev201001033)24 Sanderson M J 1997 A nonparametric approach to

      estimating divergence times in the absence of rate con-stancy Mol Biol Evol 14 1218ndash1231

      25 Sanderson M J 2002 Estimating absolute rates of mol-

      ecular evolution and divergence times a penalizedlikelihood approach Mol Biol Evol 19 101ndash109

      26 Thorne J L amp Kishino H 2002 Divergence time andevolutionary rate estimation with multilocus data SystBiol 51 689ndash702 (doi10108010635150290102456)

      27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

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      28 Battistuzzi F U Filipski A Hedges S B amp KumarS 2010 Performance of relaxed-clock methods in esti-mating evolutionary divergence times and their

      credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

      29 Brown R P amp Yang Z 2010 Bayesian dating of shal-low phylogenies with a relaxed molecular clock SystBiol 59 119ndash131 (doi101093sysbiosyp082)

      30 Inoue J Donoghue P C J amp Yang Z 2010 Theimpact of the representation of fossil calibrations onBayesian estimation of species divergence times SystBiol 59 74ndash89 (doi101093sysbiosyp078)

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      32 Simpson G G 1965 The geography of evolution collectedessays PhiladelphiaNew York PANY Chilton Books

      33 Ronquist F 1997 Dispersalndashvicariance analysis a newapproach to the quantification of historical biogeogra-phy Syst Biol 45 195ndash203 (doi101093sysbio461195)

      34 Wen J Xiang Q-Y Qian H Li J Want X-W amp

      Ickert-Bond S M Intercontinental and intracontinen-tal biogeographymdashpatterns and methods J Syst Evol4 327ndash329

      35 Nylander J A A Olsson U Alstrom P amp Sanmar-tın I 2008 Accounting for phylogenetic uncertainty

      in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

      36 Ree R H Moore B R Webb C O amp Donoghue

      M J 2005 A likelihood framework for inferring theevolution of geographic range on phylogenetic treesEvolution 59 2299ndash2311

      37 Ree R H amp Smith S A 2008 Maximum likelihoodinference of geographic range evolution by dispersal

      local extinction and cladogenesis Syst Biol 57 4ndash14 (doi10108010635150701883881)

      38 Hardy C R amp Linder H P 2005 Intraspecific varia-bility and timing in ancestral ecology reconstruction atest case from the Cape flora Syst Biol 54 299ndash316

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      version 3 analysis of phylogeny and character evolutionSunderland MA Sinauer Associates

      40 Clark J R Ree R H Alfaro M E King M G

      Wagner W L amp Roalson E H 2008 A comparativestudy in ancestral range reconstruction methodsretracing the uncertain histories of insular lineagesSyst Biol 57 693ndash707 (doi101080106351508

      02426473)41 Patterson C 1982 Morphological characters and hom-

      ology In Problems of phylogenetic reconstruction (eds K AJoysey amp A E Friday) pp 21ndash74 London UK Aca-demic Press

      42 Ree R H amp Sanmartın I 2009 Prospects and chal-lenges for parametric models in historicalbiogeographical inference J Biogeogr 36 1211ndash1220(doi101111j1365-2699200802068x)

      43 Lamm K S amp Redelings B D 2009 Reconstructing

      ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

      44 Maddison W P amp Maddison D R 2009 Mesquite amodular system for evolutionary analysis version 272See httpmesquiteprojectorg

      45 Wojcicki M amp Brooks D R 2005 PACT an efficientand powerful algorithm for generating area cladogramsJ Biogeogr 32 755ndash774 (doi101111j1365-2699200401148x)

      Phil Trans R Soc B (2011)

      46 Lim B K 2008 Historical biogeography of New Worldemballonurid bats (Tribe Diclidurini) taxon pulsediversification J Biogeogr 35 1385ndash1401 (doi10

      1111j1365-2699200801888x)47 Lim B K 2009 Review of the origins and biogeogra-

      phy of bats in South America Chiroptera Neotropical15 391ndash410

      48 Donoghue M J amp Moore B R 2003 Toward an inte-

      grative historical biogeography J Int Comp Biol 43261ndash270 (doi101093icb432261)

      49 Krause D W OrsquoConnor P M Rogers K C Samp-son S D Buckley G A amp Rogers R R 2006 Late

      Cretaceous terrestrial vertebrates from Madagascarimplications for Latin American biogeography AnnMo Bot Gard 93 178ndash208 (doi1034170026-6493(2006)93[178LCTVFM]20CO2)

      50 Sereno P C Wilson J A amp Conrad J L 2004 New

      dinosaurs link southern landmasses in the Mid-Cretac-eous Proc R Soc Lond B 271 1325ndash1330 (doi101098rspb20042692)

      51 Novacek M J 1992 Mammalian phylogeny shakingthe tree Nature 356 121ndash125 (doi101038

      356121a0)52 Novacek M J 1993 Reflections on higher mammalian

      phylogenetics J Mamm Evol 1 1064ndash755453 Springer M S Cleven G C Madsen O de Jong

      W W Waddell V G Amrine H M amp Stanhope

      M J 1997 Endemic African mammals shake the phylo-genetic tree Nature 388 61ndash64 (doi10103840386)

      54 Springer M S Murphy W J Eizirik E amp OrsquoBrienS J 2005 Molecular evidence for major placental

      clades In The rise of placental mammals origins andrelationships of the major extant clades (eds K D Roseamp J D Archibald) pp 37ndash49 Baltimore MD JohnsHopkins University Press

      55 Stanhope M J Madsen O Waddell V G Cleven

      G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

      56 Stanhope M J Waddell V G Madsen O de Jong

      W W Hedges S B Cleven G C Kao D ampSpringer M S 1998 Molecular evidence for multipleorigins of Insectivora and for a new order of endemicAfrican insectivore mammals Proc Natl Acad SciUSA 95 9967ndash9972 (doi101073pnas95179967)

      57 Waddell P Okada N amp Hasegawa M 1999 Towardsresolving the interordinal relationships of placentalmammals Syst Biol 48 1ndash5 (doi101093sysbio4811)

      58 Waddell P J Kishino H amp Ota R 2001 A phyloge-netic foundation for comparative mammaliangenomics Genome Inform 12 141ndash154

      59 Eizirik E Murphy W J amp OrsquoBrien S J 2001 Mol-ecular dating and biogeography of the early placental

      mammal radiation J Hered 92 212ndash219 (doi101093jhered922212)

      60 Madsen O et al 2001 Parallel adaptive radiations intwo major clades of placental mammals Nature 409610ndash614 (doi10103835054544)

      61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

      62 Murphy W J et al 2001 Resolution of the early placen-

      tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

      63 Scally M Madsen O Douady C J de Jong W WStanhope M J amp Springer M S 2001 Molecular

      2498 M S Springer et al Mammalian historical biogeography

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      evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

      64 Springer M S amp de Jong W W 2001 Which mamma-lian supertree to bark up Science 291 1709ndash1711

      65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

      (doi101093bioinformaticsbtl446)66 Benton M J amp Donoghue P C J 2007 Paleontologi-

      cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

      67 Reisz R R amp Muller J 2004 Molecular timescales andthe fossil record a paleontological perspective TrendsGenet 20 237ndash241 (doi101016jtig200403007)

      68 Muller J amp Reisz R R 2005 Four well-constrainedcalibration points from the vertebrate fossil record for

      molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

      69 Gradstein F M amp Ogg J G 2009 The geologic timescale In The timetree of life (eds S B Hedges amp SKumar) pp 26ndash34 Oxford UK Oxford University Press

      70 Gheerbrant E 2009 Paleocene emergence of elephantrelatives and the rapid radiation of African ungulatesProc Natl Acad Sci USA 106 10717ndash10721(doi101073pnas0900251106)

      71 Bergqvist L P Abrantes E A L amp Avilla L D S

      2004 The Xenarthra (Mammalia) of Sao Jose de Ita-boraı Basin (upper Paleocene Itaboraian) Rio deJaneiro Brazil Geodiversitas 26 323ndash337

      72 Carlini A A Pascual R Reguero M A Scillato-

      Yane G J Tonni E P amp Vizcaıno S F 1990 Thefirst Paleogene land placental mammal from Antarcticaits paleoclimatic and paleobiogeographical bearings InAbstracts IV International Congress of Systematic and Evol-utionary Biology (eds B Cox amp J Reveal) 325 p

      Baltimore MD University of Maryland73 Vizcaıno S F amp Scillato-Yane G J 1995 An Eocene

      Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

      74 Benton M J Donoghue P C J amp Asher R J 2009

      Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

      75 Flynn J J 1996 Carnivoran phylogeny and rates ofevolution morphological taxonomic and molecular

      In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

      76 Hunt Jr R M amp Tedford R H 1993 Phylogenetic

      relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

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      Phil Trans R Soc B (2011)

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      amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

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      Mammalian historical biogeography M S Springer et al 2499

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      beds In Lothagam the dawn of humanity in EasternAfrica (eds J Leakey amp J Harris) pp 363ndash368New York NY Columbia University Press

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      Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

      99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

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      tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

      Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

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      Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

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      record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

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      Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

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      Press108 Bajpai S Kay R F Williams B A Das D P

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      The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

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      E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

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      ary Science 295 2062ndash2065 (doi101126science1068700)

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      earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

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      other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

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      2500 M S Springer et al Mammalian historical biogeography

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      Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

      126 Zack S P Penkrot T A Bloch J I amp Rose K D

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      Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

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      Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

      2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

      135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

      eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

      136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

      pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

      W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

      260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

      N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

      139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

      Phil Trans R Soc B (2011)

      140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

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      0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

      roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

      of mammals Proc Natl Acad Sci USA 106 5235ndash5240

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      144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

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      dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

      148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

      108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

      dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

      37091305110239)150 McCall R 1997 Implications of recent geological

      investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

      151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

      152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

      153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

      154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

      155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

      caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

      156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

      Mammalian historical biogeography M S Springer et al 2501

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      revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

      157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

      158 Rowe D L Dunn K A Adkins R M amp Honeycutt

      R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

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      Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

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      (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

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      2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

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      513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

      ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

      AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

      diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

      167 Gunnell G F amp Simmons N B 2005 Fossil evidence

      and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

      168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

      Wyoming and the evolution of flight and echolocationNature 451 818ndash822

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      paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

      170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

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      ian evolution Science 302 1934ndash1939 (doi101126science1090718)

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      Phil Trans R Soc B (2011)

      dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

      173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

      D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

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      from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

      175 Cifelli R L 1993 Theria of metatherianndasheutherian

      grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

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      bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

      178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

      pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

      179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

      of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

      180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

      2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

      181 Beck R M Godthelp H Weisbecker V Archer M

      amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

      182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

      Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

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      for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

      184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

      implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

      185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

      phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

      186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

      marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

      187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

      2502 M S Springer et al Mammalian historical biogeography

      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

      mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

      188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

      189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

      190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

      Phil Trans R Soc B (2011)

      Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

      191 Springer M S amp Krajewski C 2009 Monotremes

      (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

      192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

      53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

      In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

      194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

      • The historical biogeography of Mammalia
        • Introduction
        • Phylogeny reconstruction
        • Molecular dating analyses
        • Ancestral area reconstruction
        • Box 1
        • Ancestral area chronograms and palaeogeography
        • Placental phylogeny and a comparison of different ancestral area reconstruction methods
        • Placental biogeography
        • The importance of dispersal
        • Bat biogeography
        • Marsupial biogeography
        • Monotreme biogeography
        • Conclusions
        • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
        • REFERENCES

        Box 1 Methods for coding areas and analysing area-coded data matrices

        I Area coding1 single multi-state character coding Individual character states are non-overlapping and correspond to a single areadisadvantages ranges are limited to a single area (character state) unless they are coded as polymorphic2 binary character coding with multiple characters Each binary character corresponds to the presenceabsence of a taxonin a single areaadvantages allows for the occupation of multiple areasdisadvantages ancestral areas may receive no state assignments3 string character coding (frac14polymorphism coding)advantages individual character states may include one or more areasdisadvantages the number of character states becomes intractable when there are too many individual areas

        II Ancestral area reconstruction1 monomorphic ancestral area reconstruction methods These methods are used in conjunction with area data that havebeen coded as a single multi-state charactera Fitch parsimony (eg MACCLADE)b stochastic mapping (eg SIMMAP)advantages stochastic mapping allows for branch lengths and multiple treesdisadvantages methods in this category implicitly assume that different character states (areas) are homologous toeach other and attempt to find a single ancestral area (character state) at each node2 polymorphic ancestral area reconstruction methods These methods allow for ancestral areas that encompass more thanone area and employ either binary character data for multiple characters or string character dataa Fitch parsimony (eg MACCLADE) with multiple binary charactersb stochastic mapping (eg SIMMAP) with multiple binary charactersc dispersalndashvicariance (DIVA)d Bayes-DIVAe dispersalndashextinction cladogenesis (DEC)f minimum area change (MAC) parsimonyadvantages all methods in this category allow for reconstructions that include multiple areas per node Stochasticmapping and DEC incorporate branch lengths stochastic mapping and Bayes-DIVA allow for multiple treesdisadvantages methods that employ multiple binary characters can result in empty ancestral area reconstructionsFitch parsimony MAC parsimony and DIVA ignore branch length information DIVA Bayes-DIVA and DEC arebiased towards ancestral reconstructions that include numerous individual areas

        2480 M S Springer et al Mammalian historical biogeography

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        single character multi-state coding with non-overlap-ping character states The second method is binarycharacter coding with multiple characters whereeach character represents the presence or absence ofa taxon in a single area In contrast to the firstmethod this approach allows ancestral nodes toencompass more than one area Ancestral area recon-structions are simply the sum of the individual areareconstructions A disadvantage of this approach isthat ancestral areas may receive lsquono-statersquo assignmentswhich imply empty ancestral areas No-state assign-ments are an artefact of the character independenceassumption [38] Finally string character coding[37] allows individual character states to include oneor more geographical areas Specifically the geo-graphical range of a species is coded as a stringdenoting its presenceabsence in a set of individualareas Ree amp Smithrsquos [37] string character coding isequivalent to Maddison amp Maddisonrsquos [39] poly-morphism coding

        Ancestral reconstruction methods can be dividedinto parsimony versus Bayesianlikelihood approaches[40] Only the latter takes advantage of branch lengthsAnother useful distinction is between methods thatreconstruct ancestral nodes as monomorphic characterstates versus those that allow for range expansion andcontraction

        MP and ML methods employ discrete-state tran-sition models and reconstruct ancestral nodes asmonomorphic Monomorphic methods for character

        Phil Trans R Soc B (2011)

        state reconstruction assume that different characterstates are homologous to each other as is the casefor characters that pass Pattersonrsquos [41] conjunctiontest which states that two structures that are foundin the same organism cannot be homologous How-ever this test is nonsensical when applied togeographical areas because the presence of a speciesin one area does not rule out its presence in anotherarea

        Other ancestral range reconstruction methods havethe advantage of allowing for polymorphic ancestralstates and thereby accommodating range expansionand contraction (box 1) [40] Polymorphic reconstruc-tions can be achieved using (i) monomorphic methodswith multiple binary characters each of which codesfor the presenceabsence of a taxon in one area and(ii) polymorphic methods that allow ancestral nodesto include one or more areas

        Fitch parsimony and stochastic mapping can beused to reconstruct ancestral nodes for multiplebinary characters and then summed over all characterreconstructions to obtain the complete set of areas foreach ancestral node One difficulty is ancestral nodeswith no-state assignments In these instances multipleinterpretations are possible including vicariance of anancestral area that was not included in the originalanalysis If there is geological evidence for formerlycontiguous areas this information may be incorpor-ated into ancillary characters to assist ancestral areareconstructions

        A B C D E F G H I J K L M N O A mdash 2 2 2 1 1 1 3 3 3 2 2 2 4 3 B 2 mdash 2 2 1 3 3 1 1 3 2 2 4 2 3 C 2 2 mdash 2 3 1 3 1 3 1 2 4 2 2 3 D 2 2 2 mdash 3 3 1 3 1 1 4 2 2 2 3 E 1 1 3 3 mdash 2 2 2 2 4 1 1 3 3 2 F 1 3 1 3 2 mdash 2 2 4 2 1 3 1 3 2 G 1 3 3 1 2 2 mdash 4 2 2 3 1 1 3 2 H 3 1 1 3 2 2 4 mdash 2 2 1 3 3 1 2 I 3 1 3 1 2 4 2 2 mdash 2 3 1 3 1 2 J 3 3 1 1 4 2 2 2 2 mdash 3 3 1 1 2 K 2 2 2 4 1 1 3 1 3 3 mdash 2 2 2 1 L 2 2 4 2 1 3 1 3 1 3 2 mdash 2 2 1 M 2 4 2 2 3 1 1 3 3 1 2 2 mdash 2 1 N 4 2 2 2 3 3 3 1 1 1 2 2 2 mdash 1 O 3 3 3 3 2 2 2 2 2 2 1 1 1 1 mdash

        A = Africa B = Eurasia C = North America D = South America E = Africa + Eurasia F = Africa + North America G = Africa + South America H = Eurasia + North America I = Eurasia + South America

        J = North America + South America

        K = Africa + Eurasia + North America

        L = Africa + Eurasia + South America

        M = Africa + North America + South America

        N = Eurasia + North America + South America

        O = Africa + Eurasia + North America + South America

        Figure 2 Example of a step matrix for minimum area change (MAC) parsimony MAC parsimony assigns equal cost to allgains and losses of an area For example a change in area from A (Africa) to G (Africa thorn South America) requires onestep (gain South America) whereas a change from A to H (Eurasia thornNorth America) requires three steps (Africa loss Eurasiagain North America gain) The step matrix is fully symmetrical

        Mammalian historical biogeography M S Springer et al 2481

        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

        In contrast to methods that were co-opted fromphylogenetics DIVA [33] and DEC [363742] weredeveloped explicitly for historical biogeographicreconstruction DIVA assigns no cost to widespreadancestral areas that are subdivided by vicariance butassigns a cost to dispersal and local extinctionevents DIVA ignores branch lengths DEC uses a con-tinuous time model for geographical range evolutionand employs string character coding to accommodatepolymorphic areas DEC permits range expansionthrough dispersal events and range contractionthrough local extinction events DEC also allowsareas of implausible distribution to be excludedsuch as those that are geographically discontinuous[43] DIVA and DEC are prone to reconstructingancestral areas that include too many individualareas especially towards the root of the tree Howeverboth programmes have options for limiting thenumber of ancestral areas

        An additional approach that we introduce is mini-mum area change (MAC) parsimony which usespolymorphic character coding [39] and Sankoff optim-ization and can be implemented with MESQUITE [44]MAC parsimony requires a step matrix (figure 2) Incontrast to DIVA MAC parsimony assigns equal costto all gains and losses of an area whether through dis-persal local extinction or vicariance An advantage ofthis approach is that it should be less prone than DIVAto reconstructing ancestral areas that are too broadrelative to terminal taxa

        Another recent approach that builds on earlier cla-distic biogeography methods is phylogenetic analysisof comparing trees (PACT) [45ndash47] Unlike earlier

        Phil Trans R Soc B (2011)

        cladistic biogeography methods PACT explicitlyincorporates molecular dates into general areacladograms

        5 ANCESTRAL AREA CHRONOGRAMS ANDPALAEOGEOGRAPHYAncestral area chronograms are similar to ancestral areacladograms but additionally incorporate temporal infor-mation into their framework Alternate approaches forreconstructing phylogeny estimating divergence timesand reconstructing ancestral areas may yield differentancestral area chronograms each of which may beinterpreted in the context of geology-based palaeogeogra-phical hypotheses (figure 1) Ancestral area chronogramsin conjunction with geology-based palaeogeographicalreconstructions provide a framework for proposingtesting and refining palaeobiogeographic hypothesesAncestral area chronograms when interpreted in thecontext of palaeogeographical hypothesis yield insightsinto dispersal vicariance and area extinctions all ofwhich are incorporated into palaeobiogeographichypotheses (figure 1)

        Ancestral area chronograms are taxon-specific butancestral area chronograms for multiple taxa that co-occur in the same region can yield general area chron-ograms General area chronograms are similar togeneral area cladograms but include temporal infor-mation that is absent from general area cladogramsThe fundamental idea behind cladistic biogeographyis that broad patterns which are revealed through gen-eral area cladograms demand comprehensive causalexplanations However general area cladograms

        2482 M S Springer et al Mammalian historical biogeography

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        ignore temporal information and may result frompseudo-congruence when taxonomic groups with thesame area relationships have different divergencetimes and presumably different underlying causes[48] Temporal information is critical for discriminat-ing between groups that diversified during the sametime period and therefore may have experienced thesame causal events and groups that diversifiedduring different time periods and require differentcausal explanations [48]

        Just as there may be multiple ancestral area chro-nograms for a taxonomic group there may also bemultiple palaeogeographical hypotheses regarding thehistory of connections of formerly connected land-masses For example the lsquopan-Gondwananrsquo andlsquoAfrica-firstrsquo hypotheses represent alternate scenariosfor the breakup of Gondwana [49] Both hypothesesagree that the initial rift was between the African com-ponent of West Gondwana (Africa South America)and the Indo-Madagascar component of EastGondwana although connections between Africa andIndo-Madagascar were maintained via South Amer-icandashAntarctica Subsequent to this initial rift the pan-Gondwanan hypothesis [50] postulates that three vicar-iant separations South America from Africa SouthAmerica from Antarctica and Antarctica from Indo-Madagascar all occurred during a narrow timewindow (100ndash90 Ma) The Africa-first hypothesis inturn suggests that Africa was the first Gondwanan con-tinent to become completely separated from otherGondwanan landmasses when it separated fromSouth America by approximately 100 Ma Indo-Mada-gascar separated from AntarcticandashAustralia atapproximately 130ndash110 Ma but maintained subaerialconnections with Antarctica via the Kerguelen Plateauand possibly the Gunnerus Ridge to the west well intothe Late Cretaceous (approx 80 Ma) The final separ-ation was between the Antarctica Peninsula and the tipof South America in the Eocene

        Krause et al [49] compared Cretaceous vertebratefaunas from different Gondwanan landmasses and con-cluded that palaeontological data are most compatiblewith a modified version of the Africa-first hypothesisKrause et alrsquos [49] work also illustrates how biogeographichypotheses based on fossils can be compared withgeology-based palaeogeographical hypotheses in anarena that allows for reciprocal illumination Thus ances-tral and general area chronograms provide a frameworkfor evaluating competing geology-based palaeogeo-graphical reconstructions just as geology-basedpalaeogeographical reconstructions provide a frameworkfor evaluating alternate ancestral area chronograms(figure 1) Krause et al [49] noted that there is no apriori reason to assume that geological data trumppalaeontological data or vice versa insofar as each typeof data can be used to reveal large-scale biogeographicpatterns

        6 PLACENTAL PHYLOGENY AND ACOMPARISON OF DIFFERENT ANCESTRALAREA RECONSTRUCTION METHODSMost placental orders have first fossil occurrences andprobable origins in Laurasia but there are also orders

        Phil Trans R Soc B (2011)

        with Gondwanan origins based on first fossil occur-rences in South America (Xenarthra) or Africa (mostafrotherian orders) Traditional morphologicalphylogenies [5152] have suggested close relationshipsbetween Laurasian and Gondwanan orders egEdentata (Xenarthra (Gondwanan) thorn Pholidota(Laurasian)) By contrast molecular phylogenies haverecovered three superordinal groups AfrotheriaLaurasiatheria and Euarchontoglires [353ndash63] thatwere not recovered on morphological trees Thesethree groups plus Xenarthra comprise the four majorclades of placental mammals There is also robust mol-ecular support for Boreoeutheria (EuarchontogliresthornLaurasiatheria) [60ndash6264] This overhaul of placentalphylogeny in conjunction with the results of moleculardating analyses laid the foundation for newbiogeographic hypotheses We discuss these in sect7 afterfirst comparing the results of different ancestralarea reconstruction methods in the remainder ofthis section

        Ancestral area chronograms were reconstructed for43 fully terrestrial placental taxa from Springer et al[3] Chiropterans and fully aquatic forms wereexcluded because of their different modes of dispersal(ie flight swimming) and also because most fullyaquatic taxa inhabit areas (ie oceans) that are notcontained in the four-area scheme used in our analyses(see below) Ancestral area chronograms were recon-structed using a ML phylogram obtained withRAXML [65] molecular divergence dates estimatedwith BEAST [6] and ancestral areas reconstructedwith a variety of methods

        Four areas (Africa Eurasia North America andSouth America) were recognized and two methodswere used to code areas for terminal taxa Firstareas were coded based on the geographical ranges ofextant species Second areas were coded based onthe geographical provenance of the oldest fossil foreach lineage The step matrix that was used in MACparsimony analysis is shown in figure 2 Given thatthe number of character states that are chosen for geo-graphical range subdivision is arbitrary it may beinstructive to compare the results of analyses withcoarser (eg Gondwana versus Laurasia) and finer(eg Europe and Asia instead of Eurasia) scales forarea coding although the analyses reported here areconfined to the four areas listed above

        We reconstructed ancestral areas using ninemethods (i) MAC parsimony (ii) Fitch parsimonywith multiple binary characters (FP-MBC) (iii) Fitchparsimony with a single multi-state character (FP-SMC) (iv) DIVA with no constraints on the maximumnumber of areas per node (v) DIVA with a maximumof two areas per node (DIVA-2) (vi) DEC with no con-straints on the maximum number of areas per node(vii) DEC with a maximum of two areas per node(DEC-2) (viii) stochastic mapping with multiplebinary characters (SM-MBC) and (ix) stochastic map-ping with a single multi-state character (SM-SMC)Ancestral area chronograms (MAC parsimony) basedon the geographical ranges of extant species and fossillineages are shown in figures 3 and 4 respectivelyTables 3 and 4 summarize the results of analyses withall nine methods

        0204060

        NeogeneQuaternary

        CenozoicPaleogene

        Ma

        Upper Miocene PP

        80

        Paleoc

        100

        OligEoceneCretaceousMesozoic

        Choloepus

        Tamandua

        MyrmecophagaEuphractus

        Chaetophractus

        Erinaceus

        Talpa

        Sorex

        Echinops

        Amblysomus

        Procavia

        Loxodonta

        MacroscelidesElephantulus

        Orycteropus

        Tamias

        Muscardinus

        Mus

        Rattus

        PedetesHystrix

        Castor

        Dipodomys

        CaviaHydrochaeris

        Erethizon

        SylvilagusOchotona

        Cynocephalus

        TupaiaLemur

        Homo

        Tarsius

        Hippopotamus

        Lama

        Tragelaphus

        Sus

        Equus

        Ceratotherium

        TapirusFelis

        Canis

        Manis

        Africa

        South America

        Eurasia

        North America

        Africa + EurasiaAfrica + North America

        1

        23

        4

        56

        7

        16

        17

        1819

        20

        2122

        23

        12

        13

        14

        15

        8

        9

        1011

        31

        32

        33

        34

        35

        36

        3738

        28

        2930

        2425

        26

        27

        4239

        41

        40

        Figure 3 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on extant ranges forterminal taxa RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times MAC parsi-mony was used to infer ancestral areas with the step matrix in figure 2 We employed soft constraints (nodes 3 8 10 16 19

        21 32 34 36 38 41) that followed a normal distribution with 95 of the normal distribution between the specified mini-mum and maximum constraints (table 1) Areas for extant taxa are enumerated in table 2 and are colour-coded as followsAfrica blue Eurasia green North America brown South America red Multi-coloured names denote taxa that occur inmore than one area (table 2) Nodes with unambiguous ancestral area reconstructions are shown with a single colouredcircle nodes with ambiguous reconstructions are shown with two or more circles and each coloured circle corresponds to

        a different reconstruction

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        Table 1 Fossil constraints Minimum ages are based on the age of the oldest unequivocal fossils belonging to the clade

        Maximum ages are based on the maximum of stratigraphic bounding [66] phylogenetic bracketing [6768] and phylogeneticuncertainty Stratigraphic bounding encompassed two successive underlying fossil-bearing deposits that did not contain anyfossils from the lineage of interest phylogenetic bracketing encompassed the age of the oldest fossils that were up to twonodes below the divergence event and phylogenetic bracketing allowed for the possibility that taxa of uncertain phylogeneticaffinities belong to the crown clade first outgroup or second outgroup Dates used in stratigraphic bounding are from

        Gradstein et al [69] We recognized the following chronological units in succession from youngest to oldest PleistocenePliocene Late Miocene Middle Miocene Early Miocene Late Oligocene Early Oligocene Late Eocene Middle EoceneEarly Eocene Late Palaeocene Middle Palaeocene Early Palaeocene Maastrichtian and Campanian

        node numbera

        fossil constraints (Ma)

        oldest fossil for minimum reference(s)minimum maximum

        3 556 712 Eritherium [70]8 585 712 Riostegotherium [6671]

        10 338 655 Antarctic specimenb [7273]16 611 842 Adunator [74]19 371 658 Hesperocyon gregarious [75ndash77]21 555 611 Hyracotherium [78]

        32 484 611 leporid tarsals [79]34 484 611 Eogliravus [80]36 338 56 Gaudeamus [8182]38 118 34 Prodolichotis [83]41 524 611 Mattimys [84]

        aNode numbers refer to figures 3 and 4bThe Eocene Antarctic specimen is an ungual phalanx that Carlini et al [72] identified as a megatheroid sloth Marenssi et al [85] revisedthe identification of the phalanx to include either Tardigrada (sloths) or Vermilingua (anteaters) Subsequently Vizcaıno amp Scillato-Yane[73] described a fragmentary tooth from the Eocene of Antarctica and referred this tooth to Tardigrada but MacPhee amp Reguero [86]reinterpreted this tooth fragment as Mammalia incertae sedis based on histological evidence

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        Ambiguous ancestral area reconstructions were aproblem for all methods and the number of nodeswith equivocal reconstructions ranged from four(SM-SMC with extant coding) to 26 (DEC-2 withextant coding) For some methods the number ofambiguous nodes was higher with extant coding thanwith fossil coding (FP-MBC FP-SMC MAC parsi-mony DIVA DIVA-2 DEC DEC-2) but in othercases this pattern was reversed (SM-MBC SM-SMC) Ancestral areas for Placentalia Exafroplacenta-lia (frac14Boreoeutheria thorn Xenarthra) and several nodeswithin Rodentia were reconstructed as ambiguous bynearly all methods Other nodes were consistentlyreconstructed with unambiguous ancestral areasincluding clades with ancestral areas in Africa(Afrotheria and its internal nodes) Eurasia (Euarch-onta Paraprimates [frac14Dermoptera thorn Scandentia]Muridae) North America (Erinaceidae thorn Soricidae)and South America (Xenarthra and its internalnodes Cavioidea) Most analyses reconstructedEurasia as the ancestral area for BoreoeutheriaLaurasiatheria and Euarchontoglires This finding isdiscussed below

        The importance of fossils is illustrated by recon-structions for Lagomorpha (tables 3 and 4) Allmethods returned North America as the ancestralarea when extant taxa were used for area coding butidentified Eurasia with fossil coding

        DIVA and DEC analyses reconstructed more nodeswith multiple areas than did the other methodsAnalyses with DEC reconstructed 17ndash20 nodes withtwo or more areas and four to six nodes with threeor more areas DIVA analyses resulted in 15ndash18

        Phil Trans R Soc B (2011)

        nodes with at least two areas and five to six nodeswith three or more areas None of the other methodsreconstructed ancestral nodes to include three ormore areas in a single reconstruction although threeor four areas were sometimes represented by thefull complement of alternate reconstructions for agiven node

        FP-MBC returned nine empty nodes with extantcoding and five empty areas with fossil coding SM-MBC with extant coding resulted in three or fourempty nodes with extant coding and four emptynodes with extinct coding (table 5)

        7 PLACENTAL BIOGEOGRAPHYAfrotheria (Afrosoricida Hyracoidea MacroscelideaProboscidea Sirenia Tubulidentata) was the first ofthe new superordinal groups to receive robust molecu-lar support [535556] With the exception of Sireniaall afrotherian orders have first fossil occurrences inAfrica and two orders (Macroscelidea Afrosoricida)have evolutionary histories that are restricted to theAfro-Malagasy region Springer et al [53] suggestedthat interordinal separation of afrotherian orders com-menced during a window of isolation that began in theCretaceous after Africa separated from South Amer-ica and lasted until the early Cenozoic when Africadocked with Europe Consistent with this scenarioAfrica was unambiguously reconstructed as the ances-tral area for Afrotheria (figures 3 and 4) Thishypothesis contrasts with traditional views whereinthe African mammal fauna arrived from the northincluding a condylarth stock that arrived in Africa

        Table 2 Geographical area of extant taxa and oldest fossils used in ancestral area reconstruction

        taxona area of extant species area of oldest fossilb

        Choloepus didactylus SA SA Megalonychidae Miocene [87]Tamandua tetradactyla SA SA Tamandua Pleistocene [87]

        Myrmecophaga tridactyla SA SA Neotamandua Miocene [8788]Euphractus sexcinctus SA SA Zaedyus Pliocene [8789]Chaetophractus villosus SA SA Chaetophractus Pliocene [90]Erinaceus europaeus Eurasia NA Adunator Palaeocene [74]Talpa altaica Eurasia Eurasia Eotalpa Eocene [91]

        Sorex araneus Eurasia NA Domnina Eocene [92]Echinops telfairi Africa Africa Widanelfarasia Eocene [93]Amblysomus hottentotus Africa Africa Eochrysochloris Oligocene [93]Procavia capensis Africa Africa Seggeurius Eocene [94]

        Loxodonta africana Africa Africa Eritherium Palaeocene [70]Macroscelides proboscideus Africa Africa Macroscelides Pliocene [95]Elephantulus rufescens Africa Africa Elephantulus Pliocene [95]Orycteropus afer Africa Africa Orycteropus Miocene [96]Tamias striatus NA NA Spurimus Eocene [97]

        Muscardinus avellanarius Eurasia Eurasia Eogliravus Eocene [80]Mus musculus Eurasia Eurasia Progonomys Miocene [74]Rattus norvegicus Eurasia Eurasia Karnimata Miocene [74]Pedetes capensis Africa Africa Pondaungimys Eocene [98]Hystrix brachyurus Eurasia Africa Gaudeamus Eocene [81]

        Castor canadensis NA NA Mattimys Eocene [84]Dipodomys merriami NA NA Proheteromys Oligocene [99]Cavia porcellus SA SA Prodolichotis Miocene [83100]Hydrochaeris hydrochaeris SA SA Cardiatherium Miocene [101]Erethizon dorsatum NA SA Eopululo Eocene [102]

        Sylvilagus floridanus NA SA Eurasia tarsal elements Eocene [79]Ochotona princeps NA Eurasia Sinolagomys Oligocene [103104]Cynocephalus variegatus Eurasia Eurasia Dermotherium Eocene [105]Tupaia minor Eurasia Eurasia Eodendrogale Eocene [106]Lemur catta Africa Africa Pachylemur Quaternary [107]

        Homo sapiens Eurasia NA SA Africa Eurasia Anthrasimias Palaeocene [108]Tarsius syrichta Eurasia Eurasia Tarsius Eocene [109]Hippopotamus amphibius Africa Africa Morotochoerus Miocene [110]Lama glama SA NA Poebrodon Eocene [111]

        Tragelaphus eurycerus Africa Eurasia Archaeomeryx Eocene [112]Sus scrofa Eurasia Africa Eurasia Eocenchoerus Eocene [113]Equus caballus Eurasia Eurasia NA Hyracotherium Eocene [78114115]Ceratotherium simum Africa NA Hyracodontidae Eocene [116]Tapirus indicus Eurasia NA Helaletes Eocene [117]

        Felis catus Africa Eurasia Stenoplesictis Eocene [118119]Canis familiaris Eurasia NA Hesperocyon Eocene [120]Manis pentadactyla Eurasia Eurasia Eomanis Eocene [121]

        aIn cases of chimeric taxa we used the most common species from Springer et alrsquos [3] concatenated supermatrix NA North AmericaSA South AmericabArea of the oldest stem fossil belonging to the terminal branch represented by each living taxon

        Mammalian historical biogeography M S Springer et al 2485

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        from Europe in the early Cenozoic and insectivoresthat arrived in the Neogene [124]

        Asher et al [125] Zack et al [126] and Tabuce et al[127] suggested that the geographical distributions ofliving afrotherians are not representative of the histori-cal geographical distribution of this clade and thatAfrotheria is Holarctic in origin based on the place-ment of extinct taxa from the Palaeocene of Laurasiawithin or at the base of Afrotheria However pseu-doextinction tests call into question the reliability ofthe placement of fossil taxa in morphological cladisticanalyses [3]

        The oldest xenarthran fossils are scutes from thePalaeocene of South America [71] Living membersof Xenarthra (anteaters sloths armadillos) are

        Phil Trans R Soc B (2011)

        restricted to South and Central America with theexception of the nine-banded armadillo whose ances-tors dispersed to North America during the GreatAmerican Interchange [128] Simpson [129130] sup-ported the view that South American xenarthransevolved in situ during South Americarsquos isolation fromother continents in the early Tertiary All of our ana-lyses are consistent with the hypothesis that SouthAmerica was the ancestral area for Xenarthra (figures3 and 4)

        The remaining placental orders are placed in Laur-asiatheria (Eulipotyphla Chiroptera PerissodactylaCetartiodactyla Carnivora Pholidota) and Euarchon-toglires (Primates Dermoptera Scandentia RodentiaLagomorpha) With the exception of bats these orders

        0204060

        NeogeneQuaternary

        Cenozoic

        Paleogene

        Ma

        Upper Miocene PP

        80

        Paleoc

        100

        OligEoceneCretaceousMesozoic

        Choloepus

        Tamandua

        MyrmecophagaEuphractus

        Chaetophractus

        Erinaceus

        Talpa

        Sorex

        Echinops

        Amblysomus

        Procavia

        Loxodonta

        MacroscelidesElephantulus

        Orycteropus

        Tamias

        Muscardinus

        Mus

        Rattus

        PedetesHystrix

        Castor

        Dipodomys

        CaviaHydrochaeris

        Erethizon

        SylvilagusOchotona

        Cynocephalus

        TupaiaLemur

        Homo

        Tarsius

        Hippopotamus

        Lama

        Tragelaphus

        Sus

        Equus

        Ceratotherium

        TapirusFelis

        Canis

        Manis

        Africa

        South America

        Eurasia

        North America

        Africa + EurasiaAfrica + North AmericaEurasia + North America

        1

        23

        4

        56

        7

        16

        17

        1819

        20

        2122

        23

        12

        13

        14

        15

        8

        9

        1011

        31

        32

        33

        34

        35

        36

        3738

        28

        2930

        2425

        26

        27

        4239

        41

        40

        Figure 4 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on the oldest fossil foreach lineage RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times and MAC par-simony was used to infer ancestral areas with the step matrix in figure 2 Areas for the oldest fossil lineage are enumerated intable 2 and are colour-coded as follows Africa blue Eurasia green North America brown South America red Nodes with

        unambiguous ancestral area reconstructions are shown with a single coloured circle nodes with ambiguous reconstructions areshown with two or more circles and each coloured circle corresponds to a different reconstruction

        2486 M S Springer et al Mammalian historical biogeography

        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

        have first fossil occurrences that are exclusively Laura-sian Our reconstructions provide support for Eurasiabut not North America as the ancestral area for theseclades (figures 3 and 4) These results are consistent

        Phil Trans R Soc B (2011)

        with previous suggestions that Cretaceous zhelestidsand zamlambdalestids from Asia are members ofcrown Placentalia [131132] Further the fossilrecord suggests that Eutheria were dominant in

        Tab

        le3

        An

        cest

        ral

        are

        are

        con

        stru

        ctio

        ns

        wit

        hare

        as

        cod

        edfo

        rex

        tan

        tta

        xa

        Th

        eord

        erof

        cod

        edare

        as

        ince

        lls

        wit

        hch

        ara

        cter

        stat

        esis

        Afr

        ica

        Eu

        rasi

        a

        Nort

        hA

        mer

        ica

        an

        dS

        ou

        thA

        mer

        ica

        FP

        Fit

        chpars

        imon

        y

        MB

        C

        mu

        ltip

        lebin

        ary

        chara

        cter

        sS

        MC

        si

        ngle

        mu

        ltis

        tate

        chara

        cter

        N

        C

        no

        con

        stra

        ints

        on

        the

        maxim

        um

        nu

        mber

        of

        are

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        0

        09

        5

        00

        0

        00

        000

        1

        09

        9

        00

        0

        00

        000

        0

        09

        9

        00

        0

        00

        0

        Pro

        sim

        ii30

        0100

        0100

        0100

        1100

        1100

        04

        6

        09

        3

        00

        0

        00

        002

        8

        09

        0

        00

        0

        00

        003

        0

        07

        0

        00

        0

        00

        003

        0

        06

        8

        00

        1

        00

        1G

        lire

        s31

        0100

        0100

        0100

        0100

        0100

        00

        0

        07

        4

        00

        0

        00

        000

        0

        08

        9

        00

        0

        00

        000

        0

        08

        1

        00

        0

        00

        000

        0

        09

        9

        00

        1

        00

        0L

        agom

        orp

        ha

        32

        0100

        0100

        0100

        0100

        0100

        00

        0

        10

        0

        00

        0

        00

        000

        0

        09

        9

        00

        0

        00

        000

        0

        09

        8

        00

        0

        00

        000

        1

        09

        8

        00

        1

        00

        0R

        od

        enti

        a33

        0(0

        1)0

        00100

        0100

        0100

        0100

        04

        1

        08

        0

        02

        5

        00

        003

        0

        09

        0

        00

        9

        00

        000

        0

        00

        0

        00

        3

        00

        000

        5

        02

        3

        07

        1

        00

        21100

        1100

        1110

        squ

        irre

        l-re

        late

        dcl

        ad

        e34

        0(0

        1)0

        00100

        0100

        0110

        0110

        00

        0

        08

        4

        05

        5

        00

        000

        0

        08

        7

        03

        0

        00

        000

        0

        00

        3

        03

        5

        00

        000

        2

        01

        5

        08

        1

        00

        1m

        ou

        se-r

        elat

        edcl

        ad

        ethorn

        35

        0000

        0100

        1000

        1000

        1000

        07

        6

        07

        6

        03

        2

        00

        005

        9

        06

        9

        00

        0

        00

        000

        0

        00

        0

        00

        1

        00

        001

        9

        00

        4

        07

        1

        00

        6H

        ystr

        icogn

        ath

        i1000

        0100

        1100

        1100

        1100

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        0101

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        1111

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        tric

        ogn

        ath

        i36

        0000

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        1000

        1001

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        08

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        00

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        01

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        00

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        07

        500

        8

        00

        0

        00

        0

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        602

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        00

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        00

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        0100

        0001

        0001

        Cav

        iom

        orp

        ha

        37

        0001

        0001

        0001

        0001

        0001

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        700

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        00

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        300

        0

        00

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        00

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        10

        000

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        avio

        idea

        38

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        elat

        edcl

        ad

        e39

        0000

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        1000

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        1100

        07

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        41

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        00

        000

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        00

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        2

        00

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        uri

        dae

        0100

        0100

        0010

        0010

        Cast

        ori

        morp

        ha

        40

        0010

        0010

        0010

        0010

        0010

        00

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        00

        000

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        00

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        00

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        uri

        dae

        42

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        0100

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        0100

        0100

        00

        0

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        7

        00

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        00

        000

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        4

        00

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        00

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        00

        000

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        09

        8

        00

        1

        00

        0

        2490 M S Springer et al Mammalian historical biogeography

        Phil Trans R Soc B (2011)

        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

        Table 5 Comparison of different methods for reconstructing ancestral areas NA1 not applicable for monomorphic

        reconstruction methods NA2 not applicable when the maximum number of areas is set at two NA2 not applicable formethods that employ single multistate charactersa

        FP-MBC FP-SMCMACParsimony DIVA DIVA-2 DEC DEC-2 SM-MBC SM-SMC

        nodes with ambiguous 75 129 128 1211 107 2323 2623 1617 614reconstructionsb 1920 1718 1012 410

        nodes with 2 areasc 33 NA1 46 1618 1516 1820 2019 77 NA11720 1717 46

        nodes with 3 areasd 00 NA1 00 65 NA2 66 NA2 00 NA145 00

        empty nodese 95 NA3 NA3 NA3 NA3 NA3 NA3 34 NA344

        aNumbers before slashes are based on analyses with area coding for extant taxa and numbers after slashes are based on analyses with areacoding for the oldest fossil See table 3 for abbreviationsbFor FP-MBC nodes were considered ambiguous if at least one area was reconstructed as (01) For SM-MBC and SM-SMC nodes wereconsidered ambiguous if the posterior probability (PP) of at least one area was 01 PP 09 (top line) or 02 PP 08 (bottom line)For DEC and DEC-2 nodes were considered ambiguous if the frequency ( f ) of at least one area was 01 f 09 (top line) or 02 p 08 (bottom line)cAt least two areas in at least one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) was takento include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line) or020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02 (bottomline)dAt least three areas in more than one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) wastaken to include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line)or 020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02(bottom line)eFor FP-MBC nodes were considered empty if all areas were reconstructed as 0 For SM-MBC nodes were considered empty if posteriorprobabilities were 010 (top line) or 020 (bottom line) for all four areas

        Mammalian historical biogeography M S Springer et al 2491

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        Eurasia throughout the Cretaceous but were absentfrom North America through much of the Late Cre-taceous and only attained appreciable diversity thereduring the last approximately 10 Myr of the period[133134] Boyer et al [135] concluded that theIndian subcontinent Eurasia and Africa are morelikely places of origin for Euarchonta than is NorthAmerica This agrees with our ancestral areareconstructions (figures 3 4 and tables 3 4)

        Although there is robust support for the monophylyof Xenarthra Afrotheria and Boreoeutheria relation-ships among these three groups and the root of theplacental tree remain contentious [105460ndash63136]Murphy et al [62] and Springer et al [10] suggested acausal relationship between the sundering of Africa andSouth America and basal cladogenesis among crown-group placental mammals given the coincidence ofmolecular dates for the base of placentals and thevicariant separation of Africa and South Americaapproximately 100ndash120 Ma

        Asher et al [125] analysed a combined matrix andrecovered Afrotheria in a nested position within Pla-centalia which contradicts the hypothesis that theplate tectonic separation of Africa and South Americaplayed a causal role in the early cladogenesis of placen-tal mammals However the nested position forAfrotheria resulted from the paraphyly of Euarchonto-glires Glires and Rodentia Rare genomic changesconfirm the monophyly of Xenarthra [137] Afrotheria[138ndash142] Euarchontoglires [139141142] Laura-siatheria [139141142] and Boreoeutheria[139141142] and preclude a nested position forAfrotheria in the placental tree

        Rare genomic changes have also been used toexamine the position of the placental root Kriegs

        Phil Trans R Soc B (2011)

        et al [139] reported LINE insertions that are sharedby Epitheria whereas Murphy et al [16] discoveredrare genomic changes that support AtlantogenataNishihara et al [142] performed genome-wide retro-poson analyses and found 22 25 and 21 LINEinsertions for Exafroplacentalia Epitheria and Atlan-togenata respectively Based on these resultsNishihara et al [142] concluded that XenarthraAfrotheria and Boreoeutheria diverged from oneanother nearly simultaneously They also suggested anew palaeogeographical model for the breakup of Pan-gaea and Gondwana in which Africa becomes isolatedfrom both South America and Laurasia at approxi-mately 120 Ma and argued that these coeval platetectonic events provide an explanation for the simul-taneous divergence of Afrotheria Xenarthra andBoreoeutheria However relaxed clock dates for thebase of Placentalia are closer to 100 Ma than to120 Ma (figures 3 and 4) A second difficulty concernsthe opening of the South Atlantic Nishihara et al[142] suggested that the Brazilian Bridge which rep-resented the last connection between Africa andSouth America was severed at approximately120 Mya but other recent reconstructions suggestthat the connection between the South Atlantic andCentral Atlantic was not established until lateAptianmid-Albian times (approx 110ndash100 Ma)[143144]

        8 THE IMPORTANCE OF DISPERSALIn the context of pre-plate tectonic views of theEarth Simpson [2] proposed three types ofmigration routes to describe the movement of ani-mals corridors filter bridges and sweepstakes

        Africa

        Mad

        agas

        car

        Tanzania

        Mozambique

        N

        100 mi

        Figure 5 Present day surface ocean currents in the Mozam-bique Channel (solid arrows) are southndashsouthwest andwould not have facilitated west to east transoceanic dispersalfrom Africa to Madagascar [153] By contrast westerly sur-face ocean currents in the Eocene (dashed arrows) would

        have facilitated dispersal across the Mozambique Channelfrom Africa to Madagascar especially during tropicalstorms [154] The outline of Madagascar with dashed linesshows its approximate position relative to Africa during theEocene

        2492 M S Springer et al Mammalian historical biogeography

        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

        dispersal Corridors connect two areas and are per-meable to all animals filter bridges impose selectivebarriers that affect some but not all animals andsweepstakes dispersal is required when there arestrong barriers to migration such as high mountainbarriers or oceans

        Simpson [2] suggested that Madagascarrsquos livingmammals were the product of sweepstakes dispersalfrom Africa to Madagascar Sweepstakes dispersalhypotheses fell out of favour with the validation ofplate tectonic theory and were summarily dismissedas lsquomiraculousrsquo hypotheses with no scientific basis[145] However it has become apparent that some dis-tributional patterns can only be explained bysweepstakes dispersal [146] Observational data alsoprovide support for long-distance vertebrate dispersal[147] Examples of low probability sweepstakes disper-sal involving mammals include the origins of theendemic mammal fauna in Madagascar and theoccurrence of caviomorph rodents and platyrrhine pri-mates in South America

        Madagascarrsquos strictly terrestrial extant mammal faunaincludes endemic lineages from four placental orderstenrecs (Afrosoricida) euplerids (Carnivora) neso-myines (Rodentia) and lemurs (Primates) In eachlineage Madagascar endemics comprise monophyleticassemblages with closest living relatives in Africa[148149] Madagascar separated from Africa approxi-mately 165 Ma but maintained its connection withAntarctica via the Kerguelen Plateau until as late as80 Ma at which time it became permanentlyseparated from other Gondwanan landmasses This his-tory suggests that Madagascarrsquos terrestrial endemicmammals are either the ancient descendants of vicariantevents that occurred prior to 80 Ma or reached Mada-gascar via transoceanic sweepstakes dispersal at a latertime Another possibility is that a land bridge connectedAfrica and Madagascar between 45 and 26 Ma [150]

        Molecular divergence dates suggest that all fourendemic lineages last shared a common ancestorwith their African sister group in the Cenozoic[148149151152] Poux et al [148] concluded thatdispersal by lemurs rodents and carnivorans musthave occurred by transoceanic dispersal rather thanland bridge dispersal based on molecular dates forthe colonization of Madagascar that were outside ofthe land bridge window ie 60ndash50 Ma for lemurs26ndash19 Ma for carnivorans and 24ndash20 Ma for rodentsHowever present ocean currents allow for dispersalfrom Madagascar to Africa but oppose reciprocal dis-persal from Africa to Madagascar across theMozambique Channel If ocean currents were thesame for most of the Cenozoic as they are todaythey would not have facilitated west to east transocea-nic dispersal across the Mozambique Channel becauseof the strong southndashsouthwest flow of the Mozambi-que Current [153]

        Ali amp Huber [154] addressed this problem by simu-lating surface ocean currents in the Indian Oceanduring the Eocene They concluded that large-scaleocean current systems in the Eocene were profoundlydifferent from modern observed circulatory patternsand that the flow along the African coast was eastwardtowards Madagascar instead of southward through the

        Phil Trans R Soc B (2011)

        Mozambique Channel (figure 5) Ali amp Huber [154]further suggested that dispersal probabilities wereenhanced by tropical storms that (i) generated largefloating tree islands that would have allowed for asuccessful oceanic voyage and (ii) acceleratedtransportation rates from Africa to Madagascar thatwould have allowed for complete crossing of theMozambique Channel in 25ndash30 days

        The dispersal of four groups of fully terrestrialmammals from Africa to Madagascar at a time whenthere was no land bridge is a testament to the impor-tance of rare sweepstakes events in the evolutionaryhistory of Placentalia Even more remarkable is theoccurrence of two different groups of placental mam-mals hystricognath rodents and anthropoid primatesin Africa and South America

        Hystricognathi includes Hystricidae (Old World por-cupines) and Phiomorpha (eg cane rats dassie rats)from the Old World and Caviomorpha (eg porcupineschinchillas) from the New World The oldest hystricog-naths are from the late Eocene Egypt and have beendated at approximately 37 Ma [81] Old World hystri-cognaths are paraphyletic usually with phiomorphshaving closer phylogenetic affinities to South Americancaviomorphs than to hystricids [14155156] Relaxedclock dates suggest that South American caviomorphslast shared a common ancestor with phiomorphsbetween 45 and 36 Ma [81155157] The most recentcommon ancestor of Caviomorpha has been dated at45ndash31 Ma [81155157158]

        PacificOcean

        NorthAtlanticOcean

        SouthAtlantic Ocean

        IndianOcean

        NorthAmerica

        SouthAmerica

        Africa

        Antarctica

        Australia

        Asia

        Europe

        PacificOcean1b

        1b

        1a3

        2

        Middle Eocene

        Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

        South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

        Mammalian historical biogeography M S Springer et al 2493

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        Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

        The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

        Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

        Phil Trans R Soc B (2011)

        phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

        9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

        The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

        Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

        or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

        node number (figure 7) Eick et al [12] re-analysis

        1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

        ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

        3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

        4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

        9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

        10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

        11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

        12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

        ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

        13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

        ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

        BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

        14 A A B C AC BC ABC15 A A B C AC BC

        16 A A B C17 A A B AC BC ABC

        2494 M S Springer et al Mammalian historical biogeography

        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

        and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

        We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

        Phil Trans R Soc B (2011)

        Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

        FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

        1

        2

        3

        4

        56

        7

        8

        9

        10

        11

        1213

        14

        1516

        17

        EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

        Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

        Mammalian historical biogeography M S Springer et al 2495

        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

        with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

        10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

        In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

        Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

        Phil Trans R Soc B (2011)

        sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

        In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

        11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

        In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

        With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

        12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

        2496 M S Springer et al Mammalian historical biogeography

        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

        together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

        MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

        REFERENCES1 Jones K E amp Safi K 2011 Ecology and evolution of

        mammalian biodiversity Phil Trans R Soc B 366

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        J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

        Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

        4 Springer M S Meredith R W Eizirik E Teeling

        E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

        5 Bollback J P 2006 SIMMAP stochastic charactermapping of discrete traits on phylogenies BMC Bioin-form 7 88 (doi1011861471-2105-7-88)

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        9 Douady C J Catzeflis F Raman J Springer M S

        amp Stanhope M J 2003 Molecular evidence for theSahara as a vicariant agent and the role of Miocene cli-matic events in the diversification of the mammalianorder Macroscelidea (elephant shrews) Proc NatlAcad Sci USA 100 8325ndash8330 (doi101073pnas

        0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

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        relaxed molecular clock study within xenarthransBMC Evol Biol 4 11 (doi1011861471-2148-4-11)

        Phil Trans R Soc B (2011)

        12 Eick G N Jacobs D S amp Matthee C A 2005 Anuclear DNA phylogenetic perspective on the evolutionof echolocation and historical biogeography of extant

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        13 Teeling E C Springer M S Madsen O Bates POrsquoBrien S J amp Murphy W J 2005 A molecular phy-logeny for bats illuminates biogeography and the fossil

        record Science 307 580ndash584 (doi101126science1105113)

        14 Huchon D Chevret P Jordan U Kilpatrick C WRanwez V Jenkins P D Brosius J amp Schmitz J

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        15 Janecka J E Miller W Pringle T H Wiens FZitzmann A Helgen K M Springer M S amp

        Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

        16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

        the root of the placental mammal tree Genome Res 17413ndash421 (doi101101gr5918807)

        17 Beck R M 2008 A dated phylogeny of marsupialsusing a molecular supermatrix and multiple fossil con-straints J Mammal 89 175ndash189 (doi10164406-

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        nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

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        based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

        20 Meredith R W Westerman M amp Springer M S 2009A phylogeny of Diprotodontia (Marsupialia) based onsequences for five nuclear genes Mol Phylogenet Evol51 554ndash571 (doi101016jympev200902009)

        21 Meredith R W Krajewski C Westerman W ampSpringer M S 2009 Relationships and divergencetimes among the orders and families of marsupialsMus N Ariz Bull 65 383ndash406

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        23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

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        ecular evolution and divergence times a penalizedlikelihood approach Mol Biol Evol 19 101ndash109

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        27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

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        credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

        29 Brown R P amp Yang Z 2010 Bayesian dating of shal-low phylogenies with a relaxed molecular clock SystBiol 59 119ndash131 (doi101093sysbiosyp082)

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        34 Wen J Xiang Q-Y Qian H Li J Want X-W amp

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        in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

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        local extinction and cladogenesis Syst Biol 57 4ndash14 (doi10108010635150701883881)

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        version 3 analysis of phylogeny and character evolutionSunderland MA Sinauer Associates

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        02426473)41 Patterson C 1982 Morphological characters and hom-

        ology In Problems of phylogenetic reconstruction (eds K AJoysey amp A E Friday) pp 21ndash74 London UK Aca-demic Press

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        43 Lamm K S amp Redelings B D 2009 Reconstructing

        ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

        44 Maddison W P amp Maddison D R 2009 Mesquite amodular system for evolutionary analysis version 272See httpmesquiteprojectorg

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        Phil Trans R Soc B (2011)

        46 Lim B K 2008 Historical biogeography of New Worldemballonurid bats (Tribe Diclidurini) taxon pulsediversification J Biogeogr 35 1385ndash1401 (doi10

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        phy of bats in South America Chiroptera Neotropical15 391ndash410

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        Cretaceous terrestrial vertebrates from Madagascarimplications for Latin American biogeography AnnMo Bot Gard 93 178ndash208 (doi1034170026-6493(2006)93[178LCTVFM]20CO2)

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        dinosaurs link southern landmasses in the Mid-Cretac-eous Proc R Soc Lond B 271 1325ndash1330 (doi101098rspb20042692)

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        phylogenetics J Mamm Evol 1 1064ndash755453 Springer M S Cleven G C Madsen O de Jong

        W W Waddell V G Amrine H M amp Stanhope

        M J 1997 Endemic African mammals shake the phylo-genetic tree Nature 388 61ndash64 (doi10103840386)

        54 Springer M S Murphy W J Eizirik E amp OrsquoBrienS J 2005 Molecular evidence for major placental

        clades In The rise of placental mammals origins andrelationships of the major extant clades (eds K D Roseamp J D Archibald) pp 37ndash49 Baltimore MD JohnsHopkins University Press

        55 Stanhope M J Madsen O Waddell V G Cleven

        G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

        56 Stanhope M J Waddell V G Madsen O de Jong

        W W Hedges S B Cleven G C Kao D ampSpringer M S 1998 Molecular evidence for multipleorigins of Insectivora and for a new order of endemicAfrican insectivore mammals Proc Natl Acad SciUSA 95 9967ndash9972 (doi101073pnas95179967)

        57 Waddell P Okada N amp Hasegawa M 1999 Towardsresolving the interordinal relationships of placentalmammals Syst Biol 48 1ndash5 (doi101093sysbio4811)

        58 Waddell P J Kishino H amp Ota R 2001 A phyloge-netic foundation for comparative mammaliangenomics Genome Inform 12 141ndash154

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        mammal radiation J Hered 92 212ndash219 (doi101093jhered922212)

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        61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

        62 Murphy W J et al 2001 Resolution of the early placen-

        tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

        63 Scally M Madsen O Douady C J de Jong W WStanhope M J amp Springer M S 2001 Molecular

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        evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

        64 Springer M S amp de Jong W W 2001 Which mamma-lian supertree to bark up Science 291 1709ndash1711

        65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

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        cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

        67 Reisz R R amp Muller J 2004 Molecular timescales andthe fossil record a paleontological perspective TrendsGenet 20 237ndash241 (doi101016jtig200403007)

        68 Muller J amp Reisz R R 2005 Four well-constrainedcalibration points from the vertebrate fossil record for

        molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

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        72 Carlini A A Pascual R Reguero M A Scillato-

        Yane G J Tonni E P amp Vizcaıno S F 1990 Thefirst Paleogene land placental mammal from Antarcticaits paleoclimatic and paleobiogeographical bearings InAbstracts IV International Congress of Systematic and Evol-utionary Biology (eds B Cox amp J Reveal) 325 p

        Baltimore MD University of Maryland73 Vizcaıno S F amp Scillato-Yane G J 1995 An Eocene

        Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

        74 Benton M J Donoghue P C J amp Asher R J 2009

        Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

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        In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

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        relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

        77 Wesley-Hunt G D amp Flynn J J 2005 Phylogeny ofthe Carnivora basal relationships among the carnivora-morphans and assessment of the position oflsquoMiacoidearsquo relative to Carnivora J Syst Palaeontol 31ndash28 (doi101017S1477201904001518)

        78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

        79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

        Phil Trans R Soc B (2011)

        80 Storch G amp Seiffert C 2007 Extraordinarily preservedspecimen of the oldest known glirid from the middleEocene of Messel (Rodentia) J Vertebr Paleontol 27

        189ndash194 (doi1016710272-4634(2007)27[189EPSOTO]20CO2)

        81 Sallam H M Seiffert E R Steiper M E amp SimonsE L 2009 Fossil and molecular evidence constrainscenarios for the early evolutionary and biogeographic

        history of hystricognathous rodents Proc Natl AcadSci USA 106 16 722ndash16 727 (doi101073pnas0908702106)

        82 Hartenberger L 1998 Description of the radiation of

        the Rodentia (Mammalia) from the Late Paleocene tothe Miocene phylogenetic consequences C R AcadSci II A 326 439ndash444

        83 Vucetich M G Verzi D H amp Hartenberger L 1999Review and analysis of the radiation of the South

        American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

        84 Flynn L J amp Jacobs L L 2008 Castoridea In Evolution oftertiary mammals of North America small mammals xenar-thrans and marine mammals (eds C M Janis G F

        Gunnell amp M D Uhen) vol 2 pp 391ndash405 CambridgeUK Cambridge University Press

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        implications Antarctic Sci 6 3ndash15 (doi101017S0954102094000027)

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        Xenarthra Mammalia) from La Meseta FormationSeymour Island West Antarctica Am Mus Novit3689 1ndash21 (doi1012067031)

        87 McKenna M C amp Bell S K 1997 Classification ofmammals above the species level New York NY Colum-

        bia University Press88 Gaudin T J amp Branham D G 1998 The phylogeny of

        the Myrmecophagidae (Mammalia Xenarthra Vermi-lingua) and relationship of Eurotamandua to theVermilingua J Mamm Evol 5 237ndash265 (doi10

        1023A1020512529767)89 Galliari F C Carlini A A amp Sanchez-Villagra M R

        2010 Evolution of the axial skeleton in armadillos(Mammalia Dasypodidae) Mamm Biol 75 326ndash333 (doi101016jmambio200903014)

        90 Poljak S Confalonieri V Fasanella M Gabrielli Mamp Lizarralde M S 2010 Phylogeography of the arma-dillo Chaetophractus villosus (Dasypodidae Xenarthra)post-glacial range expansion from Pampas to Patagonia

        (Argentina) Mol Phylogenet Evol 55 38ndash46 (doi101016jympev200912021)

        91 Sige B Crochet J-Y amp Insole A 1977 Les plusvielles taupes Geobios Mem Spec 1 141ndash157(doi101016S0016-6995(77)80014-4)

        92 Gunnell G F Bown T M Hutchinson J H ampBloch J I 2008 Lipotyphla In Evolution of Tertiarymammals of North America small mammals xenarthransand marine mammals vol 2 (eds C M Janis G FGunnell amp M D Uhen) pp 89ndash125 Cambridge

        UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

        amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

        94 Tabuce R Asher R J amp Lehmann T 2008 Afrother-ian mammals a review of current data Mammalia 722ndash14 (doi101515MAMM2008004)

        Mammalian historical biogeography M S Springer et al 2499

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        96 Milledge S 2003 Fossil aardvarks from the Lothagam

        beds In Lothagam the dawn of humanity in EasternAfrica (eds J Leakey amp J Harris) pp 363ndash368New York NY Columbia University Press

        97 Flynn L J amp Jacobs L L 2008 Aplodontia In Evol-ution of tertiary mammals of North America smallmammals xenarthrans and marine mammals vol 2(eds C M Janis G F Gunnell amp M D Uhen) pp377ndash390 Cambridge UK Cambridge UniversityPress

        98 Marivaux L Ducrocq S Jaeger J-J Marandat BSudre J Chaimanee Y Tun S T Htoon W ampSoe A N 2005 New remains of Pondaungimysanomaluropsis (Rodentia Anomaluroidea) from thelatest middle Eocene Pondaung Formation of

        Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

        99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

        100 Antoine P-O et al 2007 The middle Miocene (Laven-

        tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

        Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

        Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

        (doi1016710272-4634(2007)27[683OADOTO]20CO2)

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        Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

        103 Martin T 2004 Evolution of incisor enamel micro-structure in Lagomorpha J Vertebr Paleontol 24

        411ndash426 (doi1016712513)104 Lopez-Martinez N 2008 The lagomorph fossil

        record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

        105 Marivaux L Bocat L Chaimanee Y Jaeger J-JMarandat B Srisuk P Tafforeau P Yamee C ampWelcomme L 2006 Cynocephalid dermopterans

        from the Palaeogene of South Asia (Thailand Myan-mar and Pakistan) systematic evolutionary andpalaeobiogeographic implications Zool Scripta 35395ndash420 (doi101111j1463-6409200600235x)

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        Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

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        Press108 Bajpai S Kay R F Williams B A Das D P

        Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

        Phil Trans R Soc B (2011)

        109 Beard K C Qi T Dawson M R Wang B amp Li C1994 A diverse new primate fauna from middle Eocenefissure-fillings in southeastern China Nature 368

        604ndash609 (doi101038368604a0)110 Orliac M Boisserie J-R MacLatchy L amp Lihoreau

        F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

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        The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

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        E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

        114 Bowen G J Clyde W C Koch P L Ting SAlroy J Tsubamoto T Wang Y amp Wang Y 2002Mammalian dispersal at the PaleoceneEocene bound-

        ary Science 295 2062ndash2065 (doi101126science1068700)

        115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

        earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

        116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

        117 Colbert M W amp Schoch R M 1998 Tapiroidea and

        other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

        118 Dashzeveg D 1996 Some carnivorous mammals fromthe Paleogene of the Eastern Gobi Desert Mongoliaand the application of Oligocene carnivores to strati-graphic correlation Am Mus Novit 3179 1ndash14

        119 Hunt Jr R M 1998 Evolution of the aeluroid Carni-vora diversity of the earliest aeluroids from Eurasia(Quercy Hsanda-Gol) and the origin of felids AmMus Novit 3252 1ndash65

        120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

        cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

        121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

        122 Huelsenbeck J P amp Ronquist F 2001 MrBAYESBayesian inference of phylogenetic trees Bioinformatics17 754ndash755 (doi101093bioinformatics178754)

        123 Ronquist F amp Huelsenbeck J P 2003 MrBayes 3Bayesian phylogenetic inference under mixed modelsBioinformatics 19 1572ndash1574 (doi101093bioinfor-maticsbtg180)

        2500 M S Springer et al Mammalian historical biogeography

        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

        124 Carroll R L 1988 Vertebrate paleontology and evolutionNew York NY W H Freeman and Company

        125 Asher R J Novacek M J amp Geisler J G 2003

        Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

        126 Zack S P Penkrot T A Bloch J I amp Rose K D

        2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

        127 Tabuce R Marivaux L Adaci M Bensalah M

        Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

        128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

        129 Simpson G G 1951 History of the fauna of Latin

        America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

        130 Simpson G G 1978 Early mammals in South Amer-ica fact controversy and mystery Proc Am PhilSoc 122 318ndash328

        131 Archibald J D 1996 Fossil evidence for a Late Cretac-eous origin of lsquohoofedrsquo mammals Science 272 1150ndash1153 (doi101126science27252651150)

        132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

        133 Cifelli R L amp Davis B M 2003 Marsupial origins

        Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

        2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

        135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

        eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

        136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

        pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

        W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

        260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

        N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

        139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

        Phil Trans R Soc B (2011)

        140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

        141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

        0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

        roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

        of mammals Proc Natl Acad Sci USA 106 5235ndash5240

        143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

        144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

        145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

        146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

        73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

        dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

        148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

        108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

        dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

        37091305110239)150 McCall R 1997 Implications of recent geological

        investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

        151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

        152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

        153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

        154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

        155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

        caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

        156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

        Mammalian historical biogeography M S Springer et al 2501

        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

        revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

        157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

        158 Rowe D L Dunn K A Adkins R M amp Honeycutt

        R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

        159 Beard K C Wang B Dawson M Huang X amp

        Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

        160 Beard K C amp Wang J 2004 The eosimiid primates

        (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

        161 Arnason U Gullberg A Schweizer B A amp Janke A

        2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

        162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

        163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

        164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

        513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

        ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

        AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

        diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

        167 Gunnell G F amp Simmons N B 2005 Fossil evidence

        and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

        168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

        Wyoming and the evolution of flight and echolocationNature 451 818ndash822

        169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

        paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

        170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

        171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

        ian evolution Science 302 1934ndash1939 (doi101126science1090718)

        172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

        Phil Trans R Soc B (2011)

        dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

        173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

        D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

        174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

        from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

        175 Cifelli R L 1993 Theria of metatherianndasheutherian

        grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

        176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

        177 Wible J R 1990 Late Cretaceous marsupial petrosal

        bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

        178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

        pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

        179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

        of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

        180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

        2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

        181 Beck R M Godthelp H Weisbecker V Archer M

        amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

        182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

        Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

        183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

        for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

        184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

        implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

        185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

        phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

        186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

        marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

        187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

        2502 M S Springer et al Mammalian historical biogeography

        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

        mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

        188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

        189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

        190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

        Phil Trans R Soc B (2011)

        Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

        191 Springer M S amp Krajewski C 2009 Monotremes

        (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

        192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

        53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

        In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

        194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

        • The historical biogeography of Mammalia
          • Introduction
          • Phylogeny reconstruction
          • Molecular dating analyses
          • Ancestral area reconstruction
          • Box 1
          • Ancestral area chronograms and palaeogeography
          • Placental phylogeny and a comparison of different ancestral area reconstruction methods
          • Placental biogeography
          • The importance of dispersal
          • Bat biogeography
          • Marsupial biogeography
          • Monotreme biogeography
          • Conclusions
          • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
          • REFERENCES

          A B C D E F G H I J K L M N O A mdash 2 2 2 1 1 1 3 3 3 2 2 2 4 3 B 2 mdash 2 2 1 3 3 1 1 3 2 2 4 2 3 C 2 2 mdash 2 3 1 3 1 3 1 2 4 2 2 3 D 2 2 2 mdash 3 3 1 3 1 1 4 2 2 2 3 E 1 1 3 3 mdash 2 2 2 2 4 1 1 3 3 2 F 1 3 1 3 2 mdash 2 2 4 2 1 3 1 3 2 G 1 3 3 1 2 2 mdash 4 2 2 3 1 1 3 2 H 3 1 1 3 2 2 4 mdash 2 2 1 3 3 1 2 I 3 1 3 1 2 4 2 2 mdash 2 3 1 3 1 2 J 3 3 1 1 4 2 2 2 2 mdash 3 3 1 1 2 K 2 2 2 4 1 1 3 1 3 3 mdash 2 2 2 1 L 2 2 4 2 1 3 1 3 1 3 2 mdash 2 2 1 M 2 4 2 2 3 1 1 3 3 1 2 2 mdash 2 1 N 4 2 2 2 3 3 3 1 1 1 2 2 2 mdash 1 O 3 3 3 3 2 2 2 2 2 2 1 1 1 1 mdash

          A = Africa B = Eurasia C = North America D = South America E = Africa + Eurasia F = Africa + North America G = Africa + South America H = Eurasia + North America I = Eurasia + South America

          J = North America + South America

          K = Africa + Eurasia + North America

          L = Africa + Eurasia + South America

          M = Africa + North America + South America

          N = Eurasia + North America + South America

          O = Africa + Eurasia + North America + South America

          Figure 2 Example of a step matrix for minimum area change (MAC) parsimony MAC parsimony assigns equal cost to allgains and losses of an area For example a change in area from A (Africa) to G (Africa thorn South America) requires onestep (gain South America) whereas a change from A to H (Eurasia thornNorth America) requires three steps (Africa loss Eurasiagain North America gain) The step matrix is fully symmetrical

          Mammalian historical biogeography M S Springer et al 2481

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          In contrast to methods that were co-opted fromphylogenetics DIVA [33] and DEC [363742] weredeveloped explicitly for historical biogeographicreconstruction DIVA assigns no cost to widespreadancestral areas that are subdivided by vicariance butassigns a cost to dispersal and local extinctionevents DIVA ignores branch lengths DEC uses a con-tinuous time model for geographical range evolutionand employs string character coding to accommodatepolymorphic areas DEC permits range expansionthrough dispersal events and range contractionthrough local extinction events DEC also allowsareas of implausible distribution to be excludedsuch as those that are geographically discontinuous[43] DIVA and DEC are prone to reconstructingancestral areas that include too many individualareas especially towards the root of the tree Howeverboth programmes have options for limiting thenumber of ancestral areas

          An additional approach that we introduce is mini-mum area change (MAC) parsimony which usespolymorphic character coding [39] and Sankoff optim-ization and can be implemented with MESQUITE [44]MAC parsimony requires a step matrix (figure 2) Incontrast to DIVA MAC parsimony assigns equal costto all gains and losses of an area whether through dis-persal local extinction or vicariance An advantage ofthis approach is that it should be less prone than DIVAto reconstructing ancestral areas that are too broadrelative to terminal taxa

          Another recent approach that builds on earlier cla-distic biogeography methods is phylogenetic analysisof comparing trees (PACT) [45ndash47] Unlike earlier

          Phil Trans R Soc B (2011)

          cladistic biogeography methods PACT explicitlyincorporates molecular dates into general areacladograms

          5 ANCESTRAL AREA CHRONOGRAMS ANDPALAEOGEOGRAPHYAncestral area chronograms are similar to ancestral areacladograms but additionally incorporate temporal infor-mation into their framework Alternate approaches forreconstructing phylogeny estimating divergence timesand reconstructing ancestral areas may yield differentancestral area chronograms each of which may beinterpreted in the context of geology-based palaeogeogra-phical hypotheses (figure 1) Ancestral area chronogramsin conjunction with geology-based palaeogeographicalreconstructions provide a framework for proposingtesting and refining palaeobiogeographic hypothesesAncestral area chronograms when interpreted in thecontext of palaeogeographical hypothesis yield insightsinto dispersal vicariance and area extinctions all ofwhich are incorporated into palaeobiogeographichypotheses (figure 1)

          Ancestral area chronograms are taxon-specific butancestral area chronograms for multiple taxa that co-occur in the same region can yield general area chron-ograms General area chronograms are similar togeneral area cladograms but include temporal infor-mation that is absent from general area cladogramsThe fundamental idea behind cladistic biogeographyis that broad patterns which are revealed through gen-eral area cladograms demand comprehensive causalexplanations However general area cladograms

          2482 M S Springer et al Mammalian historical biogeography

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          ignore temporal information and may result frompseudo-congruence when taxonomic groups with thesame area relationships have different divergencetimes and presumably different underlying causes[48] Temporal information is critical for discriminat-ing between groups that diversified during the sametime period and therefore may have experienced thesame causal events and groups that diversifiedduring different time periods and require differentcausal explanations [48]

          Just as there may be multiple ancestral area chro-nograms for a taxonomic group there may also bemultiple palaeogeographical hypotheses regarding thehistory of connections of formerly connected land-masses For example the lsquopan-Gondwananrsquo andlsquoAfrica-firstrsquo hypotheses represent alternate scenariosfor the breakup of Gondwana [49] Both hypothesesagree that the initial rift was between the African com-ponent of West Gondwana (Africa South America)and the Indo-Madagascar component of EastGondwana although connections between Africa andIndo-Madagascar were maintained via South Amer-icandashAntarctica Subsequent to this initial rift the pan-Gondwanan hypothesis [50] postulates that three vicar-iant separations South America from Africa SouthAmerica from Antarctica and Antarctica from Indo-Madagascar all occurred during a narrow timewindow (100ndash90 Ma) The Africa-first hypothesis inturn suggests that Africa was the first Gondwanan con-tinent to become completely separated from otherGondwanan landmasses when it separated fromSouth America by approximately 100 Ma Indo-Mada-gascar separated from AntarcticandashAustralia atapproximately 130ndash110 Ma but maintained subaerialconnections with Antarctica via the Kerguelen Plateauand possibly the Gunnerus Ridge to the west well intothe Late Cretaceous (approx 80 Ma) The final separ-ation was between the Antarctica Peninsula and the tipof South America in the Eocene

          Krause et al [49] compared Cretaceous vertebratefaunas from different Gondwanan landmasses and con-cluded that palaeontological data are most compatiblewith a modified version of the Africa-first hypothesisKrause et alrsquos [49] work also illustrates how biogeographichypotheses based on fossils can be compared withgeology-based palaeogeographical hypotheses in anarena that allows for reciprocal illumination Thus ances-tral and general area chronograms provide a frameworkfor evaluating competing geology-based palaeogeo-graphical reconstructions just as geology-basedpalaeogeographical reconstructions provide a frameworkfor evaluating alternate ancestral area chronograms(figure 1) Krause et al [49] noted that there is no apriori reason to assume that geological data trumppalaeontological data or vice versa insofar as each typeof data can be used to reveal large-scale biogeographicpatterns

          6 PLACENTAL PHYLOGENY AND ACOMPARISON OF DIFFERENT ANCESTRALAREA RECONSTRUCTION METHODSMost placental orders have first fossil occurrences andprobable origins in Laurasia but there are also orders

          Phil Trans R Soc B (2011)

          with Gondwanan origins based on first fossil occur-rences in South America (Xenarthra) or Africa (mostafrotherian orders) Traditional morphologicalphylogenies [5152] have suggested close relationshipsbetween Laurasian and Gondwanan orders egEdentata (Xenarthra (Gondwanan) thorn Pholidota(Laurasian)) By contrast molecular phylogenies haverecovered three superordinal groups AfrotheriaLaurasiatheria and Euarchontoglires [353ndash63] thatwere not recovered on morphological trees Thesethree groups plus Xenarthra comprise the four majorclades of placental mammals There is also robust mol-ecular support for Boreoeutheria (EuarchontogliresthornLaurasiatheria) [60ndash6264] This overhaul of placentalphylogeny in conjunction with the results of moleculardating analyses laid the foundation for newbiogeographic hypotheses We discuss these in sect7 afterfirst comparing the results of different ancestralarea reconstruction methods in the remainder ofthis section

          Ancestral area chronograms were reconstructed for43 fully terrestrial placental taxa from Springer et al[3] Chiropterans and fully aquatic forms wereexcluded because of their different modes of dispersal(ie flight swimming) and also because most fullyaquatic taxa inhabit areas (ie oceans) that are notcontained in the four-area scheme used in our analyses(see below) Ancestral area chronograms were recon-structed using a ML phylogram obtained withRAXML [65] molecular divergence dates estimatedwith BEAST [6] and ancestral areas reconstructedwith a variety of methods

          Four areas (Africa Eurasia North America andSouth America) were recognized and two methodswere used to code areas for terminal taxa Firstareas were coded based on the geographical ranges ofextant species Second areas were coded based onthe geographical provenance of the oldest fossil foreach lineage The step matrix that was used in MACparsimony analysis is shown in figure 2 Given thatthe number of character states that are chosen for geo-graphical range subdivision is arbitrary it may beinstructive to compare the results of analyses withcoarser (eg Gondwana versus Laurasia) and finer(eg Europe and Asia instead of Eurasia) scales forarea coding although the analyses reported here areconfined to the four areas listed above

          We reconstructed ancestral areas using ninemethods (i) MAC parsimony (ii) Fitch parsimonywith multiple binary characters (FP-MBC) (iii) Fitchparsimony with a single multi-state character (FP-SMC) (iv) DIVA with no constraints on the maximumnumber of areas per node (v) DIVA with a maximumof two areas per node (DIVA-2) (vi) DEC with no con-straints on the maximum number of areas per node(vii) DEC with a maximum of two areas per node(DEC-2) (viii) stochastic mapping with multiplebinary characters (SM-MBC) and (ix) stochastic map-ping with a single multi-state character (SM-SMC)Ancestral area chronograms (MAC parsimony) basedon the geographical ranges of extant species and fossillineages are shown in figures 3 and 4 respectivelyTables 3 and 4 summarize the results of analyses withall nine methods

          0204060

          NeogeneQuaternary

          CenozoicPaleogene

          Ma

          Upper Miocene PP

          80

          Paleoc

          100

          OligEoceneCretaceousMesozoic

          Choloepus

          Tamandua

          MyrmecophagaEuphractus

          Chaetophractus

          Erinaceus

          Talpa

          Sorex

          Echinops

          Amblysomus

          Procavia

          Loxodonta

          MacroscelidesElephantulus

          Orycteropus

          Tamias

          Muscardinus

          Mus

          Rattus

          PedetesHystrix

          Castor

          Dipodomys

          CaviaHydrochaeris

          Erethizon

          SylvilagusOchotona

          Cynocephalus

          TupaiaLemur

          Homo

          Tarsius

          Hippopotamus

          Lama

          Tragelaphus

          Sus

          Equus

          Ceratotherium

          TapirusFelis

          Canis

          Manis

          Africa

          South America

          Eurasia

          North America

          Africa + EurasiaAfrica + North America

          1

          23

          4

          56

          7

          16

          17

          1819

          20

          2122

          23

          12

          13

          14

          15

          8

          9

          1011

          31

          32

          33

          34

          35

          36

          3738

          28

          2930

          2425

          26

          27

          4239

          41

          40

          Figure 3 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on extant ranges forterminal taxa RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times MAC parsi-mony was used to infer ancestral areas with the step matrix in figure 2 We employed soft constraints (nodes 3 8 10 16 19

          21 32 34 36 38 41) that followed a normal distribution with 95 of the normal distribution between the specified mini-mum and maximum constraints (table 1) Areas for extant taxa are enumerated in table 2 and are colour-coded as followsAfrica blue Eurasia green North America brown South America red Multi-coloured names denote taxa that occur inmore than one area (table 2) Nodes with unambiguous ancestral area reconstructions are shown with a single colouredcircle nodes with ambiguous reconstructions are shown with two or more circles and each coloured circle corresponds to

          a different reconstruction

          Mammalian historical biogeography M S Springer et al 2483

          Phil Trans R Soc B (2011)

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          Table 1 Fossil constraints Minimum ages are based on the age of the oldest unequivocal fossils belonging to the clade

          Maximum ages are based on the maximum of stratigraphic bounding [66] phylogenetic bracketing [6768] and phylogeneticuncertainty Stratigraphic bounding encompassed two successive underlying fossil-bearing deposits that did not contain anyfossils from the lineage of interest phylogenetic bracketing encompassed the age of the oldest fossils that were up to twonodes below the divergence event and phylogenetic bracketing allowed for the possibility that taxa of uncertain phylogeneticaffinities belong to the crown clade first outgroup or second outgroup Dates used in stratigraphic bounding are from

          Gradstein et al [69] We recognized the following chronological units in succession from youngest to oldest PleistocenePliocene Late Miocene Middle Miocene Early Miocene Late Oligocene Early Oligocene Late Eocene Middle EoceneEarly Eocene Late Palaeocene Middle Palaeocene Early Palaeocene Maastrichtian and Campanian

          node numbera

          fossil constraints (Ma)

          oldest fossil for minimum reference(s)minimum maximum

          3 556 712 Eritherium [70]8 585 712 Riostegotherium [6671]

          10 338 655 Antarctic specimenb [7273]16 611 842 Adunator [74]19 371 658 Hesperocyon gregarious [75ndash77]21 555 611 Hyracotherium [78]

          32 484 611 leporid tarsals [79]34 484 611 Eogliravus [80]36 338 56 Gaudeamus [8182]38 118 34 Prodolichotis [83]41 524 611 Mattimys [84]

          aNode numbers refer to figures 3 and 4bThe Eocene Antarctic specimen is an ungual phalanx that Carlini et al [72] identified as a megatheroid sloth Marenssi et al [85] revisedthe identification of the phalanx to include either Tardigrada (sloths) or Vermilingua (anteaters) Subsequently Vizcaıno amp Scillato-Yane[73] described a fragmentary tooth from the Eocene of Antarctica and referred this tooth to Tardigrada but MacPhee amp Reguero [86]reinterpreted this tooth fragment as Mammalia incertae sedis based on histological evidence

          2484 M S Springer et al Mammalian historical biogeography

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          Ambiguous ancestral area reconstructions were aproblem for all methods and the number of nodeswith equivocal reconstructions ranged from four(SM-SMC with extant coding) to 26 (DEC-2 withextant coding) For some methods the number ofambiguous nodes was higher with extant coding thanwith fossil coding (FP-MBC FP-SMC MAC parsi-mony DIVA DIVA-2 DEC DEC-2) but in othercases this pattern was reversed (SM-MBC SM-SMC) Ancestral areas for Placentalia Exafroplacenta-lia (frac14Boreoeutheria thorn Xenarthra) and several nodeswithin Rodentia were reconstructed as ambiguous bynearly all methods Other nodes were consistentlyreconstructed with unambiguous ancestral areasincluding clades with ancestral areas in Africa(Afrotheria and its internal nodes) Eurasia (Euarch-onta Paraprimates [frac14Dermoptera thorn Scandentia]Muridae) North America (Erinaceidae thorn Soricidae)and South America (Xenarthra and its internalnodes Cavioidea) Most analyses reconstructedEurasia as the ancestral area for BoreoeutheriaLaurasiatheria and Euarchontoglires This finding isdiscussed below

          The importance of fossils is illustrated by recon-structions for Lagomorpha (tables 3 and 4) Allmethods returned North America as the ancestralarea when extant taxa were used for area coding butidentified Eurasia with fossil coding

          DIVA and DEC analyses reconstructed more nodeswith multiple areas than did the other methodsAnalyses with DEC reconstructed 17ndash20 nodes withtwo or more areas and four to six nodes with threeor more areas DIVA analyses resulted in 15ndash18

          Phil Trans R Soc B (2011)

          nodes with at least two areas and five to six nodeswith three or more areas None of the other methodsreconstructed ancestral nodes to include three ormore areas in a single reconstruction although threeor four areas were sometimes represented by thefull complement of alternate reconstructions for agiven node

          FP-MBC returned nine empty nodes with extantcoding and five empty areas with fossil coding SM-MBC with extant coding resulted in three or fourempty nodes with extant coding and four emptynodes with extinct coding (table 5)

          7 PLACENTAL BIOGEOGRAPHYAfrotheria (Afrosoricida Hyracoidea MacroscelideaProboscidea Sirenia Tubulidentata) was the first ofthe new superordinal groups to receive robust molecu-lar support [535556] With the exception of Sireniaall afrotherian orders have first fossil occurrences inAfrica and two orders (Macroscelidea Afrosoricida)have evolutionary histories that are restricted to theAfro-Malagasy region Springer et al [53] suggestedthat interordinal separation of afrotherian orders com-menced during a window of isolation that began in theCretaceous after Africa separated from South Amer-ica and lasted until the early Cenozoic when Africadocked with Europe Consistent with this scenarioAfrica was unambiguously reconstructed as the ances-tral area for Afrotheria (figures 3 and 4) Thishypothesis contrasts with traditional views whereinthe African mammal fauna arrived from the northincluding a condylarth stock that arrived in Africa

          Table 2 Geographical area of extant taxa and oldest fossils used in ancestral area reconstruction

          taxona area of extant species area of oldest fossilb

          Choloepus didactylus SA SA Megalonychidae Miocene [87]Tamandua tetradactyla SA SA Tamandua Pleistocene [87]

          Myrmecophaga tridactyla SA SA Neotamandua Miocene [8788]Euphractus sexcinctus SA SA Zaedyus Pliocene [8789]Chaetophractus villosus SA SA Chaetophractus Pliocene [90]Erinaceus europaeus Eurasia NA Adunator Palaeocene [74]Talpa altaica Eurasia Eurasia Eotalpa Eocene [91]

          Sorex araneus Eurasia NA Domnina Eocene [92]Echinops telfairi Africa Africa Widanelfarasia Eocene [93]Amblysomus hottentotus Africa Africa Eochrysochloris Oligocene [93]Procavia capensis Africa Africa Seggeurius Eocene [94]

          Loxodonta africana Africa Africa Eritherium Palaeocene [70]Macroscelides proboscideus Africa Africa Macroscelides Pliocene [95]Elephantulus rufescens Africa Africa Elephantulus Pliocene [95]Orycteropus afer Africa Africa Orycteropus Miocene [96]Tamias striatus NA NA Spurimus Eocene [97]

          Muscardinus avellanarius Eurasia Eurasia Eogliravus Eocene [80]Mus musculus Eurasia Eurasia Progonomys Miocene [74]Rattus norvegicus Eurasia Eurasia Karnimata Miocene [74]Pedetes capensis Africa Africa Pondaungimys Eocene [98]Hystrix brachyurus Eurasia Africa Gaudeamus Eocene [81]

          Castor canadensis NA NA Mattimys Eocene [84]Dipodomys merriami NA NA Proheteromys Oligocene [99]Cavia porcellus SA SA Prodolichotis Miocene [83100]Hydrochaeris hydrochaeris SA SA Cardiatherium Miocene [101]Erethizon dorsatum NA SA Eopululo Eocene [102]

          Sylvilagus floridanus NA SA Eurasia tarsal elements Eocene [79]Ochotona princeps NA Eurasia Sinolagomys Oligocene [103104]Cynocephalus variegatus Eurasia Eurasia Dermotherium Eocene [105]Tupaia minor Eurasia Eurasia Eodendrogale Eocene [106]Lemur catta Africa Africa Pachylemur Quaternary [107]

          Homo sapiens Eurasia NA SA Africa Eurasia Anthrasimias Palaeocene [108]Tarsius syrichta Eurasia Eurasia Tarsius Eocene [109]Hippopotamus amphibius Africa Africa Morotochoerus Miocene [110]Lama glama SA NA Poebrodon Eocene [111]

          Tragelaphus eurycerus Africa Eurasia Archaeomeryx Eocene [112]Sus scrofa Eurasia Africa Eurasia Eocenchoerus Eocene [113]Equus caballus Eurasia Eurasia NA Hyracotherium Eocene [78114115]Ceratotherium simum Africa NA Hyracodontidae Eocene [116]Tapirus indicus Eurasia NA Helaletes Eocene [117]

          Felis catus Africa Eurasia Stenoplesictis Eocene [118119]Canis familiaris Eurasia NA Hesperocyon Eocene [120]Manis pentadactyla Eurasia Eurasia Eomanis Eocene [121]

          aIn cases of chimeric taxa we used the most common species from Springer et alrsquos [3] concatenated supermatrix NA North AmericaSA South AmericabArea of the oldest stem fossil belonging to the terminal branch represented by each living taxon

          Mammalian historical biogeography M S Springer et al 2485

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          from Europe in the early Cenozoic and insectivoresthat arrived in the Neogene [124]

          Asher et al [125] Zack et al [126] and Tabuce et al[127] suggested that the geographical distributions ofliving afrotherians are not representative of the histori-cal geographical distribution of this clade and thatAfrotheria is Holarctic in origin based on the place-ment of extinct taxa from the Palaeocene of Laurasiawithin or at the base of Afrotheria However pseu-doextinction tests call into question the reliability ofthe placement of fossil taxa in morphological cladisticanalyses [3]

          The oldest xenarthran fossils are scutes from thePalaeocene of South America [71] Living membersof Xenarthra (anteaters sloths armadillos) are

          Phil Trans R Soc B (2011)

          restricted to South and Central America with theexception of the nine-banded armadillo whose ances-tors dispersed to North America during the GreatAmerican Interchange [128] Simpson [129130] sup-ported the view that South American xenarthransevolved in situ during South Americarsquos isolation fromother continents in the early Tertiary All of our ana-lyses are consistent with the hypothesis that SouthAmerica was the ancestral area for Xenarthra (figures3 and 4)

          The remaining placental orders are placed in Laur-asiatheria (Eulipotyphla Chiroptera PerissodactylaCetartiodactyla Carnivora Pholidota) and Euarchon-toglires (Primates Dermoptera Scandentia RodentiaLagomorpha) With the exception of bats these orders

          0204060

          NeogeneQuaternary

          Cenozoic

          Paleogene

          Ma

          Upper Miocene PP

          80

          Paleoc

          100

          OligEoceneCretaceousMesozoic

          Choloepus

          Tamandua

          MyrmecophagaEuphractus

          Chaetophractus

          Erinaceus

          Talpa

          Sorex

          Echinops

          Amblysomus

          Procavia

          Loxodonta

          MacroscelidesElephantulus

          Orycteropus

          Tamias

          Muscardinus

          Mus

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          PedetesHystrix

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          Dipodomys

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          Homo

          Tarsius

          Hippopotamus

          Lama

          Tragelaphus

          Sus

          Equus

          Ceratotherium

          TapirusFelis

          Canis

          Manis

          Africa

          South America

          Eurasia

          North America

          Africa + EurasiaAfrica + North AmericaEurasia + North America

          1

          23

          4

          56

          7

          16

          17

          1819

          20

          2122

          23

          12

          13

          14

          15

          8

          9

          1011

          31

          32

          33

          34

          35

          36

          3738

          28

          2930

          2425

          26

          27

          4239

          41

          40

          Figure 4 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on the oldest fossil foreach lineage RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times and MAC par-simony was used to infer ancestral areas with the step matrix in figure 2 Areas for the oldest fossil lineage are enumerated intable 2 and are colour-coded as follows Africa blue Eurasia green North America brown South America red Nodes with

          unambiguous ancestral area reconstructions are shown with a single coloured circle nodes with ambiguous reconstructions areshown with two or more circles and each coloured circle corresponds to a different reconstruction

          2486 M S Springer et al Mammalian historical biogeography

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          have first fossil occurrences that are exclusively Laura-sian Our reconstructions provide support for Eurasiabut not North America as the ancestral area for theseclades (figures 3 and 4) These results are consistent

          Phil Trans R Soc B (2011)

          with previous suggestions that Cretaceous zhelestidsand zamlambdalestids from Asia are members ofcrown Placentalia [131132] Further the fossilrecord suggests that Eutheria were dominant in

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          (Con

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          Mammalian historical biogeography M S Springer et al 2489

          Phil Trans R Soc B (2011)

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          Tab

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          2490 M S Springer et al Mammalian historical biogeography

          Phil Trans R Soc B (2011)

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          Table 5 Comparison of different methods for reconstructing ancestral areas NA1 not applicable for monomorphic

          reconstruction methods NA2 not applicable when the maximum number of areas is set at two NA2 not applicable formethods that employ single multistate charactersa

          FP-MBC FP-SMCMACParsimony DIVA DIVA-2 DEC DEC-2 SM-MBC SM-SMC

          nodes with ambiguous 75 129 128 1211 107 2323 2623 1617 614reconstructionsb 1920 1718 1012 410

          nodes with 2 areasc 33 NA1 46 1618 1516 1820 2019 77 NA11720 1717 46

          nodes with 3 areasd 00 NA1 00 65 NA2 66 NA2 00 NA145 00

          empty nodese 95 NA3 NA3 NA3 NA3 NA3 NA3 34 NA344

          aNumbers before slashes are based on analyses with area coding for extant taxa and numbers after slashes are based on analyses with areacoding for the oldest fossil See table 3 for abbreviationsbFor FP-MBC nodes were considered ambiguous if at least one area was reconstructed as (01) For SM-MBC and SM-SMC nodes wereconsidered ambiguous if the posterior probability (PP) of at least one area was 01 PP 09 (top line) or 02 PP 08 (bottom line)For DEC and DEC-2 nodes were considered ambiguous if the frequency ( f ) of at least one area was 01 f 09 (top line) or 02 p 08 (bottom line)cAt least two areas in at least one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) was takento include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line) or020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02 (bottomline)dAt least three areas in more than one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) wastaken to include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line)or 020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02(bottom line)eFor FP-MBC nodes were considered empty if all areas were reconstructed as 0 For SM-MBC nodes were considered empty if posteriorprobabilities were 010 (top line) or 020 (bottom line) for all four areas

          Mammalian historical biogeography M S Springer et al 2491

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          Eurasia throughout the Cretaceous but were absentfrom North America through much of the Late Cre-taceous and only attained appreciable diversity thereduring the last approximately 10 Myr of the period[133134] Boyer et al [135] concluded that theIndian subcontinent Eurasia and Africa are morelikely places of origin for Euarchonta than is NorthAmerica This agrees with our ancestral areareconstructions (figures 3 4 and tables 3 4)

          Although there is robust support for the monophylyof Xenarthra Afrotheria and Boreoeutheria relation-ships among these three groups and the root of theplacental tree remain contentious [105460ndash63136]Murphy et al [62] and Springer et al [10] suggested acausal relationship between the sundering of Africa andSouth America and basal cladogenesis among crown-group placental mammals given the coincidence ofmolecular dates for the base of placentals and thevicariant separation of Africa and South Americaapproximately 100ndash120 Ma

          Asher et al [125] analysed a combined matrix andrecovered Afrotheria in a nested position within Pla-centalia which contradicts the hypothesis that theplate tectonic separation of Africa and South Americaplayed a causal role in the early cladogenesis of placen-tal mammals However the nested position forAfrotheria resulted from the paraphyly of Euarchonto-glires Glires and Rodentia Rare genomic changesconfirm the monophyly of Xenarthra [137] Afrotheria[138ndash142] Euarchontoglires [139141142] Laura-siatheria [139141142] and Boreoeutheria[139141142] and preclude a nested position forAfrotheria in the placental tree

          Rare genomic changes have also been used toexamine the position of the placental root Kriegs

          Phil Trans R Soc B (2011)

          et al [139] reported LINE insertions that are sharedby Epitheria whereas Murphy et al [16] discoveredrare genomic changes that support AtlantogenataNishihara et al [142] performed genome-wide retro-poson analyses and found 22 25 and 21 LINEinsertions for Exafroplacentalia Epitheria and Atlan-togenata respectively Based on these resultsNishihara et al [142] concluded that XenarthraAfrotheria and Boreoeutheria diverged from oneanother nearly simultaneously They also suggested anew palaeogeographical model for the breakup of Pan-gaea and Gondwana in which Africa becomes isolatedfrom both South America and Laurasia at approxi-mately 120 Ma and argued that these coeval platetectonic events provide an explanation for the simul-taneous divergence of Afrotheria Xenarthra andBoreoeutheria However relaxed clock dates for thebase of Placentalia are closer to 100 Ma than to120 Ma (figures 3 and 4) A second difficulty concernsthe opening of the South Atlantic Nishihara et al[142] suggested that the Brazilian Bridge which rep-resented the last connection between Africa andSouth America was severed at approximately120 Mya but other recent reconstructions suggestthat the connection between the South Atlantic andCentral Atlantic was not established until lateAptianmid-Albian times (approx 110ndash100 Ma)[143144]

          8 THE IMPORTANCE OF DISPERSALIn the context of pre-plate tectonic views of theEarth Simpson [2] proposed three types ofmigration routes to describe the movement of ani-mals corridors filter bridges and sweepstakes

          Africa

          Mad

          agas

          car

          Tanzania

          Mozambique

          N

          100 mi

          Figure 5 Present day surface ocean currents in the Mozam-bique Channel (solid arrows) are southndashsouthwest andwould not have facilitated west to east transoceanic dispersalfrom Africa to Madagascar [153] By contrast westerly sur-face ocean currents in the Eocene (dashed arrows) would

          have facilitated dispersal across the Mozambique Channelfrom Africa to Madagascar especially during tropicalstorms [154] The outline of Madagascar with dashed linesshows its approximate position relative to Africa during theEocene

          2492 M S Springer et al Mammalian historical biogeography

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          dispersal Corridors connect two areas and are per-meable to all animals filter bridges impose selectivebarriers that affect some but not all animals andsweepstakes dispersal is required when there arestrong barriers to migration such as high mountainbarriers or oceans

          Simpson [2] suggested that Madagascarrsquos livingmammals were the product of sweepstakes dispersalfrom Africa to Madagascar Sweepstakes dispersalhypotheses fell out of favour with the validation ofplate tectonic theory and were summarily dismissedas lsquomiraculousrsquo hypotheses with no scientific basis[145] However it has become apparent that some dis-tributional patterns can only be explained bysweepstakes dispersal [146] Observational data alsoprovide support for long-distance vertebrate dispersal[147] Examples of low probability sweepstakes disper-sal involving mammals include the origins of theendemic mammal fauna in Madagascar and theoccurrence of caviomorph rodents and platyrrhine pri-mates in South America

          Madagascarrsquos strictly terrestrial extant mammal faunaincludes endemic lineages from four placental orderstenrecs (Afrosoricida) euplerids (Carnivora) neso-myines (Rodentia) and lemurs (Primates) In eachlineage Madagascar endemics comprise monophyleticassemblages with closest living relatives in Africa[148149] Madagascar separated from Africa approxi-mately 165 Ma but maintained its connection withAntarctica via the Kerguelen Plateau until as late as80 Ma at which time it became permanentlyseparated from other Gondwanan landmasses This his-tory suggests that Madagascarrsquos terrestrial endemicmammals are either the ancient descendants of vicariantevents that occurred prior to 80 Ma or reached Mada-gascar via transoceanic sweepstakes dispersal at a latertime Another possibility is that a land bridge connectedAfrica and Madagascar between 45 and 26 Ma [150]

          Molecular divergence dates suggest that all fourendemic lineages last shared a common ancestorwith their African sister group in the Cenozoic[148149151152] Poux et al [148] concluded thatdispersal by lemurs rodents and carnivorans musthave occurred by transoceanic dispersal rather thanland bridge dispersal based on molecular dates forthe colonization of Madagascar that were outside ofthe land bridge window ie 60ndash50 Ma for lemurs26ndash19 Ma for carnivorans and 24ndash20 Ma for rodentsHowever present ocean currents allow for dispersalfrom Madagascar to Africa but oppose reciprocal dis-persal from Africa to Madagascar across theMozambique Channel If ocean currents were thesame for most of the Cenozoic as they are todaythey would not have facilitated west to east transocea-nic dispersal across the Mozambique Channel becauseof the strong southndashsouthwest flow of the Mozambi-que Current [153]

          Ali amp Huber [154] addressed this problem by simu-lating surface ocean currents in the Indian Oceanduring the Eocene They concluded that large-scaleocean current systems in the Eocene were profoundlydifferent from modern observed circulatory patternsand that the flow along the African coast was eastwardtowards Madagascar instead of southward through the

          Phil Trans R Soc B (2011)

          Mozambique Channel (figure 5) Ali amp Huber [154]further suggested that dispersal probabilities wereenhanced by tropical storms that (i) generated largefloating tree islands that would have allowed for asuccessful oceanic voyage and (ii) acceleratedtransportation rates from Africa to Madagascar thatwould have allowed for complete crossing of theMozambique Channel in 25ndash30 days

          The dispersal of four groups of fully terrestrialmammals from Africa to Madagascar at a time whenthere was no land bridge is a testament to the impor-tance of rare sweepstakes events in the evolutionaryhistory of Placentalia Even more remarkable is theoccurrence of two different groups of placental mam-mals hystricognath rodents and anthropoid primatesin Africa and South America

          Hystricognathi includes Hystricidae (Old World por-cupines) and Phiomorpha (eg cane rats dassie rats)from the Old World and Caviomorpha (eg porcupineschinchillas) from the New World The oldest hystricog-naths are from the late Eocene Egypt and have beendated at approximately 37 Ma [81] Old World hystri-cognaths are paraphyletic usually with phiomorphshaving closer phylogenetic affinities to South Americancaviomorphs than to hystricids [14155156] Relaxedclock dates suggest that South American caviomorphslast shared a common ancestor with phiomorphsbetween 45 and 36 Ma [81155157] The most recentcommon ancestor of Caviomorpha has been dated at45ndash31 Ma [81155157158]

          PacificOcean

          NorthAtlanticOcean

          SouthAtlantic Ocean

          IndianOcean

          NorthAmerica

          SouthAmerica

          Africa

          Antarctica

          Australia

          Asia

          Europe

          PacificOcean1b

          1b

          1a3

          2

          Middle Eocene

          Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

          South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

          Mammalian historical biogeography M S Springer et al 2493

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

          The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

          Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

          Phil Trans R Soc B (2011)

          phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

          9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

          The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

          Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

          or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

          node number (figure 7) Eick et al [12] re-analysis

          1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

          ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

          3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

          4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

          9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

          10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

          11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

          12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

          ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

          13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

          ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

          BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

          14 A A B C AC BC ABC15 A A B C AC BC

          16 A A B C17 A A B AC BC ABC

          2494 M S Springer et al Mammalian historical biogeography

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

          We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

          Phil Trans R Soc B (2011)

          Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

          FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

          1

          2

          3

          4

          56

          7

          8

          9

          10

          11

          1213

          14

          1516

          17

          EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

          Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

          Mammalian historical biogeography M S Springer et al 2495

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

          10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

          In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

          Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

          Phil Trans R Soc B (2011)

          sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

          In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

          11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

          In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

          With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

          12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

          2496 M S Springer et al Mammalian historical biogeography

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

          MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

          REFERENCES1 Jones K E amp Safi K 2011 Ecology and evolution of

          mammalian biodiversity Phil Trans R Soc B 366

          2451ndash2461 (doi101098rstb20110090)2 Simpson G G 1940 Mammals and land bridges

          J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

          Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

          4 Springer M S Meredith R W Eizirik E Teeling

          E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

          5 Bollback J P 2006 SIMMAP stochastic charactermapping of discrete traits on phylogenies BMC Bioin-form 7 88 (doi1011861471-2105-7-88)

          6 Drummond A J Ho S Y W Phillips M J amp Ram-baut A 2006 Relaxed phylogenetics and dating withconfidence PLoS Biol 4 e88 (doi101371journalpbio0040088)

          7 Zuckerkandl E amp Pauling L 1962 Molecular diseaseevolution and genetic heterogeneity In Horizons in bio-chemistry (eds M Kasha amp B Pullman) pp 189ndash225New York NY Academic Press

          8 Douady C J amp Douzery E J P 2003 Molecular esti-mation of eulipotyphlan divergence times and theevolution of lsquoInsectivorarsquo Mol Phylogenet Evol 28285ndash296 (doi101016S1055-7903(03)00119-2)

          9 Douady C J Catzeflis F Raman J Springer M S

          amp Stanhope M J 2003 Molecular evidence for theSahara as a vicariant agent and the role of Miocene cli-matic events in the diversification of the mammalianorder Macroscelidea (elephant shrews) Proc NatlAcad Sci USA 100 8325ndash8330 (doi101073pnas

          0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

          S J 2003 Placental mammal diversification and theCretaceousndashTertiary boundary Proc Natl Acad SciUSA 100 1056ndash1061 (doi101073pnas0334222

          100)11 Delsuc F Vizcaıno S F amp Douzery E J P 2004

          Influence of Tertiary paleoenvironmental changes onthe diversification of South American mammals a

          relaxed molecular clock study within xenarthransBMC Evol Biol 4 11 (doi1011861471-2148-4-11)

          Phil Trans R Soc B (2011)

          12 Eick G N Jacobs D S amp Matthee C A 2005 Anuclear DNA phylogenetic perspective on the evolutionof echolocation and historical biogeography of extant

          bats (Chiroptera) Mol Biol Evol 22 1869ndash1886(doi101093molbevmsi180)

          13 Teeling E C Springer M S Madsen O Bates POrsquoBrien S J amp Murphy W J 2005 A molecular phy-logeny for bats illuminates biogeography and the fossil

          record Science 307 580ndash584 (doi101126science1105113)

          14 Huchon D Chevret P Jordan U Kilpatrick C WRanwez V Jenkins P D Brosius J amp Schmitz J

          2007 Multiple molecular evidences for a living mamma-lian fossil Proc Natl Acad Sci USA 104 7495ndash7499(doi101073pnas0701289104)

          15 Janecka J E Miller W Pringle T H Wiens FZitzmann A Helgen K M Springer M S amp

          Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

          16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

          the root of the placental mammal tree Genome Res 17413ndash421 (doi101101gr5918807)

          17 Beck R M 2008 A dated phylogeny of marsupialsusing a molecular supermatrix and multiple fossil con-straints J Mammal 89 175ndash189 (doi10164406-

          MAMM-A-4371)18 Meredith R W Westerman M amp Springer M S

          2008 A timescale and phylogeny for lsquobandicootsrsquo (Pera-melemorphia Marsupialia) based on sequences for five

          nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

          19 Meredith R W Westerman M amp Springer M S2008 Phylogeny and timescale for the living genera ofkangaroos and kin (Macropodiformes Marsupialia)

          based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

          20 Meredith R W Westerman M amp Springer M S 2009A phylogeny of Diprotodontia (Marsupialia) based onsequences for five nuclear genes Mol Phylogenet Evol51 554ndash571 (doi101016jympev200902009)

          21 Meredith R W Krajewski C Westerman W ampSpringer M S 2009 Relationships and divergencetimes among the orders and families of marsupialsMus N Ariz Bull 65 383ndash406

          22 Chatterjee H J Ho S W Y Barnes I amp Groves C2009 Estimating the phylogeny and divergence times ofprimates using a supermatrix approach BMC EvolBiol 9 259 (doi1011861471-2148-9-259)

          23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

          (doi101016jympev201001033)24 Sanderson M J 1997 A nonparametric approach to

          estimating divergence times in the absence of rate con-stancy Mol Biol Evol 14 1218ndash1231

          25 Sanderson M J 2002 Estimating absolute rates of mol-

          ecular evolution and divergence times a penalizedlikelihood approach Mol Biol Evol 19 101ndash109

          26 Thorne J L amp Kishino H 2002 Divergence time andevolutionary rate estimation with multilocus data SystBiol 51 689ndash702 (doi10108010635150290102456)

          27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

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          28 Battistuzzi F U Filipski A Hedges S B amp KumarS 2010 Performance of relaxed-clock methods in esti-mating evolutionary divergence times and their

          credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

          29 Brown R P amp Yang Z 2010 Bayesian dating of shal-low phylogenies with a relaxed molecular clock SystBiol 59 119ndash131 (doi101093sysbiosyp082)

          30 Inoue J Donoghue P C J amp Yang Z 2010 Theimpact of the representation of fossil calibrations onBayesian estimation of species divergence times SystBiol 59 74ndash89 (doi101093sysbiosyp078)

          31 Morrone J J amp Crisci J V 1995 Historical biogeogra-phy introduction to methods Annu Rev Ecol Syst 26373ndash401 (doi101146annureves26110195002105)

          32 Simpson G G 1965 The geography of evolution collectedessays PhiladelphiaNew York PANY Chilton Books

          33 Ronquist F 1997 Dispersalndashvicariance analysis a newapproach to the quantification of historical biogeogra-phy Syst Biol 45 195ndash203 (doi101093sysbio461195)

          34 Wen J Xiang Q-Y Qian H Li J Want X-W amp

          Ickert-Bond S M Intercontinental and intracontinen-tal biogeographymdashpatterns and methods J Syst Evol4 327ndash329

          35 Nylander J A A Olsson U Alstrom P amp Sanmar-tın I 2008 Accounting for phylogenetic uncertainty

          in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

          36 Ree R H Moore B R Webb C O amp Donoghue

          M J 2005 A likelihood framework for inferring theevolution of geographic range on phylogenetic treesEvolution 59 2299ndash2311

          37 Ree R H amp Smith S A 2008 Maximum likelihoodinference of geographic range evolution by dispersal

          local extinction and cladogenesis Syst Biol 57 4ndash14 (doi10108010635150701883881)

          38 Hardy C R amp Linder H P 2005 Intraspecific varia-bility and timing in ancestral ecology reconstruction atest case from the Cape flora Syst Biol 54 299ndash316

          (doi10108010635150590923317)39 Maddison W P amp Maddison D R 1992 MacClade

          version 3 analysis of phylogeny and character evolutionSunderland MA Sinauer Associates

          40 Clark J R Ree R H Alfaro M E King M G

          Wagner W L amp Roalson E H 2008 A comparativestudy in ancestral range reconstruction methodsretracing the uncertain histories of insular lineagesSyst Biol 57 693ndash707 (doi101080106351508

          02426473)41 Patterson C 1982 Morphological characters and hom-

          ology In Problems of phylogenetic reconstruction (eds K AJoysey amp A E Friday) pp 21ndash74 London UK Aca-demic Press

          42 Ree R H amp Sanmartın I 2009 Prospects and chal-lenges for parametric models in historicalbiogeographical inference J Biogeogr 36 1211ndash1220(doi101111j1365-2699200802068x)

          43 Lamm K S amp Redelings B D 2009 Reconstructing

          ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

          44 Maddison W P amp Maddison D R 2009 Mesquite amodular system for evolutionary analysis version 272See httpmesquiteprojectorg

          45 Wojcicki M amp Brooks D R 2005 PACT an efficientand powerful algorithm for generating area cladogramsJ Biogeogr 32 755ndash774 (doi101111j1365-2699200401148x)

          Phil Trans R Soc B (2011)

          46 Lim B K 2008 Historical biogeography of New Worldemballonurid bats (Tribe Diclidurini) taxon pulsediversification J Biogeogr 35 1385ndash1401 (doi10

          1111j1365-2699200801888x)47 Lim B K 2009 Review of the origins and biogeogra-

          phy of bats in South America Chiroptera Neotropical15 391ndash410

          48 Donoghue M J amp Moore B R 2003 Toward an inte-

          grative historical biogeography J Int Comp Biol 43261ndash270 (doi101093icb432261)

          49 Krause D W OrsquoConnor P M Rogers K C Samp-son S D Buckley G A amp Rogers R R 2006 Late

          Cretaceous terrestrial vertebrates from Madagascarimplications for Latin American biogeography AnnMo Bot Gard 93 178ndash208 (doi1034170026-6493(2006)93[178LCTVFM]20CO2)

          50 Sereno P C Wilson J A amp Conrad J L 2004 New

          dinosaurs link southern landmasses in the Mid-Cretac-eous Proc R Soc Lond B 271 1325ndash1330 (doi101098rspb20042692)

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          356121a0)52 Novacek M J 1993 Reflections on higher mammalian

          phylogenetics J Mamm Evol 1 1064ndash755453 Springer M S Cleven G C Madsen O de Jong

          W W Waddell V G Amrine H M amp Stanhope

          M J 1997 Endemic African mammals shake the phylo-genetic tree Nature 388 61ndash64 (doi10103840386)

          54 Springer M S Murphy W J Eizirik E amp OrsquoBrienS J 2005 Molecular evidence for major placental

          clades In The rise of placental mammals origins andrelationships of the major extant clades (eds K D Roseamp J D Archibald) pp 37ndash49 Baltimore MD JohnsHopkins University Press

          55 Stanhope M J Madsen O Waddell V G Cleven

          G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

          56 Stanhope M J Waddell V G Madsen O de Jong

          W W Hedges S B Cleven G C Kao D ampSpringer M S 1998 Molecular evidence for multipleorigins of Insectivora and for a new order of endemicAfrican insectivore mammals Proc Natl Acad SciUSA 95 9967ndash9972 (doi101073pnas95179967)

          57 Waddell P Okada N amp Hasegawa M 1999 Towardsresolving the interordinal relationships of placentalmammals Syst Biol 48 1ndash5 (doi101093sysbio4811)

          58 Waddell P J Kishino H amp Ota R 2001 A phyloge-netic foundation for comparative mammaliangenomics Genome Inform 12 141ndash154

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          mammal radiation J Hered 92 212ndash219 (doi101093jhered922212)

          60 Madsen O et al 2001 Parallel adaptive radiations intwo major clades of placental mammals Nature 409610ndash614 (doi10103835054544)

          61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

          62 Murphy W J et al 2001 Resolution of the early placen-

          tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

          63 Scally M Madsen O Douady C J de Jong W WStanhope M J amp Springer M S 2001 Molecular

          2498 M S Springer et al Mammalian historical biogeography

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

          64 Springer M S amp de Jong W W 2001 Which mamma-lian supertree to bark up Science 291 1709ndash1711

          65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

          (doi101093bioinformaticsbtl446)66 Benton M J amp Donoghue P C J 2007 Paleontologi-

          cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

          67 Reisz R R amp Muller J 2004 Molecular timescales andthe fossil record a paleontological perspective TrendsGenet 20 237ndash241 (doi101016jtig200403007)

          68 Muller J amp Reisz R R 2005 Four well-constrainedcalibration points from the vertebrate fossil record for

          molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

          69 Gradstein F M amp Ogg J G 2009 The geologic timescale In The timetree of life (eds S B Hedges amp SKumar) pp 26ndash34 Oxford UK Oxford University Press

          70 Gheerbrant E 2009 Paleocene emergence of elephantrelatives and the rapid radiation of African ungulatesProc Natl Acad Sci USA 106 10717ndash10721(doi101073pnas0900251106)

          71 Bergqvist L P Abrantes E A L amp Avilla L D S

          2004 The Xenarthra (Mammalia) of Sao Jose de Ita-boraı Basin (upper Paleocene Itaboraian) Rio deJaneiro Brazil Geodiversitas 26 323ndash337

          72 Carlini A A Pascual R Reguero M A Scillato-

          Yane G J Tonni E P amp Vizcaıno S F 1990 Thefirst Paleogene land placental mammal from Antarcticaits paleoclimatic and paleobiogeographical bearings InAbstracts IV International Congress of Systematic and Evol-utionary Biology (eds B Cox amp J Reveal) 325 p

          Baltimore MD University of Maryland73 Vizcaıno S F amp Scillato-Yane G J 1995 An Eocene

          Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

          74 Benton M J Donoghue P C J amp Asher R J 2009

          Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

          75 Flynn J J 1996 Carnivoran phylogeny and rates ofevolution morphological taxonomic and molecular

          In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

          76 Hunt Jr R M amp Tedford R H 1993 Phylogenetic

          relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

          77 Wesley-Hunt G D amp Flynn J J 2005 Phylogeny ofthe Carnivora basal relationships among the carnivora-morphans and assessment of the position oflsquoMiacoidearsquo relative to Carnivora J Syst Palaeontol 31ndash28 (doi101017S1477201904001518)

          78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

          79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

          Phil Trans R Soc B (2011)

          80 Storch G amp Seiffert C 2007 Extraordinarily preservedspecimen of the oldest known glirid from the middleEocene of Messel (Rodentia) J Vertebr Paleontol 27

          189ndash194 (doi1016710272-4634(2007)27[189EPSOTO]20CO2)

          81 Sallam H M Seiffert E R Steiper M E amp SimonsE L 2009 Fossil and molecular evidence constrainscenarios for the early evolutionary and biogeographic

          history of hystricognathous rodents Proc Natl AcadSci USA 106 16 722ndash16 727 (doi101073pnas0908702106)

          82 Hartenberger L 1998 Description of the radiation of

          the Rodentia (Mammalia) from the Late Paleocene tothe Miocene phylogenetic consequences C R AcadSci II A 326 439ndash444

          83 Vucetich M G Verzi D H amp Hartenberger L 1999Review and analysis of the radiation of the South

          American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

          84 Flynn L J amp Jacobs L L 2008 Castoridea In Evolution oftertiary mammals of North America small mammals xenar-thrans and marine mammals (eds C M Janis G F

          Gunnell amp M D Uhen) vol 2 pp 391ndash405 CambridgeUK Cambridge University Press

          85 Marenssi S A Reguero M A Santillana S N ampVizcaıno S F 1994 Eocene land mammals from Sey-mour Island Antarctica paleobiogeographical

          implications Antarctic Sci 6 3ndash15 (doi101017S0954102094000027)

          86 MacPhee R D E amp Reguero M A 2010 Reinterpre-tation of a middle Eocene record of Tardigrada (Pilosa

          Xenarthra Mammalia) from La Meseta FormationSeymour Island West Antarctica Am Mus Novit3689 1ndash21 (doi1012067031)

          87 McKenna M C amp Bell S K 1997 Classification ofmammals above the species level New York NY Colum-

          bia University Press88 Gaudin T J amp Branham D G 1998 The phylogeny of

          the Myrmecophagidae (Mammalia Xenarthra Vermi-lingua) and relationship of Eurotamandua to theVermilingua J Mamm Evol 5 237ndash265 (doi10

          1023A1020512529767)89 Galliari F C Carlini A A amp Sanchez-Villagra M R

          2010 Evolution of the axial skeleton in armadillos(Mammalia Dasypodidae) Mamm Biol 75 326ndash333 (doi101016jmambio200903014)

          90 Poljak S Confalonieri V Fasanella M Gabrielli Mamp Lizarralde M S 2010 Phylogeography of the arma-dillo Chaetophractus villosus (Dasypodidae Xenarthra)post-glacial range expansion from Pampas to Patagonia

          (Argentina) Mol Phylogenet Evol 55 38ndash46 (doi101016jympev200912021)

          91 Sige B Crochet J-Y amp Insole A 1977 Les plusvielles taupes Geobios Mem Spec 1 141ndash157(doi101016S0016-6995(77)80014-4)

          92 Gunnell G F Bown T M Hutchinson J H ampBloch J I 2008 Lipotyphla In Evolution of Tertiarymammals of North America small mammals xenarthransand marine mammals vol 2 (eds C M Janis G FGunnell amp M D Uhen) pp 89ndash125 Cambridge

          UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

          amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

          94 Tabuce R Asher R J amp Lehmann T 2008 Afrother-ian mammals a review of current data Mammalia 722ndash14 (doi101515MAMM2008004)

          Mammalian historical biogeography M S Springer et al 2499

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          95 Butler P M 1995 Fossil Macroscelidea Mammal Rev25 3ndash14 (doi101111j1365-29071995tb00432x)

          96 Milledge S 2003 Fossil aardvarks from the Lothagam

          beds In Lothagam the dawn of humanity in EasternAfrica (eds J Leakey amp J Harris) pp 363ndash368New York NY Columbia University Press

          97 Flynn L J amp Jacobs L L 2008 Aplodontia In Evol-ution of tertiary mammals of North America smallmammals xenarthrans and marine mammals vol 2(eds C M Janis G F Gunnell amp M D Uhen) pp377ndash390 Cambridge UK Cambridge UniversityPress

          98 Marivaux L Ducrocq S Jaeger J-J Marandat BSudre J Chaimanee Y Tun S T Htoon W ampSoe A N 2005 New remains of Pondaungimysanomaluropsis (Rodentia Anomaluroidea) from thelatest middle Eocene Pondaung Formation of

          Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

          99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

          100 Antoine P-O et al 2007 The middle Miocene (Laven-

          tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

          Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

          Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

          (doi1016710272-4634(2007)27[683OADOTO]20CO2)

          102 Frailey C D amp Campbell K E 2004 The rodents ofthe Santa Rosa Local Fauna In The Paleogene mamma-lian fauna of Santa Rosa Amazonian Peru (ed K E

          Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

          103 Martin T 2004 Evolution of incisor enamel micro-structure in Lagomorpha J Vertebr Paleontol 24

          411ndash426 (doi1016712513)104 Lopez-Martinez N 2008 The lagomorph fossil

          record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

          105 Marivaux L Bocat L Chaimanee Y Jaeger J-JMarandat B Srisuk P Tafforeau P Yamee C ampWelcomme L 2006 Cynocephalid dermopterans

          from the Palaeogene of South Asia (Thailand Myan-mar and Pakistan) systematic evolutionary andpalaeobiogeographic implications Zool Scripta 35395ndash420 (doi101111j1463-6409200600235x)

          106 Tong Y 1988 Fossil tree shrews from the Eocene

          Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

          107 Godfrey L R amp Jungers W L 2002 Quaternary fossillemurs In The primate fossil record (ed W C Hartwig)pp 97ndash121 Cambridge UK Cambridge University

          Press108 Bajpai S Kay R F Williams B A Das D P

          Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

          Phil Trans R Soc B (2011)

          109 Beard K C Qi T Dawson M R Wang B amp Li C1994 A diverse new primate fauna from middle Eocenefissure-fillings in southeastern China Nature 368

          604ndash609 (doi101038368604a0)110 Orliac M Boisserie J-R MacLatchy L amp Lihoreau

          F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

          111 Honey J G Harrison J A Prothero D R ampStevens M S 1998 Camelidae In Evolution of Tertiarymammals of North America terrestrial carnivoresungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp439ndash462 Cambridge UK Cambridge University Press

          112 Metais G amp Vislobokova I 2008 Basal ruminants In

          The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

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          E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

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          ary Science 295 2062ndash2065 (doi101126science1068700)

          115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

          earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

          116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

          117 Colbert M W amp Schoch R M 1998 Tapiroidea and

          other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

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          119 Hunt Jr R M 1998 Evolution of the aeluroid Carni-vora diversity of the earliest aeluroids from Eurasia(Quercy Hsanda-Gol) and the origin of felids AmMus Novit 3252 1ndash65

          120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

          cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

          121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

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          123 Ronquist F amp Huelsenbeck J P 2003 MrBayes 3Bayesian phylogenetic inference under mixed modelsBioinformatics 19 1572ndash1574 (doi101093bioinfor-maticsbtg180)

          2500 M S Springer et al Mammalian historical biogeography

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          125 Asher R J Novacek M J amp Geisler J G 2003

          Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

          126 Zack S P Penkrot T A Bloch J I amp Rose K D

          2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

          127 Tabuce R Marivaux L Adaci M Bensalah M

          Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

          128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

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          America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

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          132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

          133 Cifelli R L amp Davis B M 2003 Marsupial origins

          Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

          2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

          135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

          eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

          136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

          pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

          W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

          260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

          N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

          139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

          Phil Trans R Soc B (2011)

          140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

          141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

          0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

          roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

          of mammals Proc Natl Acad Sci USA 106 5235ndash5240

          143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

          144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

          145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

          146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

          73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

          dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

          148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

          108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

          dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

          37091305110239)150 McCall R 1997 Implications of recent geological

          investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

          151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

          152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

          153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

          154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

          155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

          caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

          156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

          Mammalian historical biogeography M S Springer et al 2501

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          revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

          157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

          158 Rowe D L Dunn K A Adkins R M amp Honeycutt

          R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

          159 Beard K C Wang B Dawson M Huang X amp

          Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

          160 Beard K C amp Wang J 2004 The eosimiid primates

          (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

          161 Arnason U Gullberg A Schweizer B A amp Janke A

          2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

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          513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

          ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

          AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

          diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

          167 Gunnell G F amp Simmons N B 2005 Fossil evidence

          and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

          168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

          Wyoming and the evolution of flight and echolocationNature 451 818ndash822

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          paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

          170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

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          ian evolution Science 302 1934ndash1939 (doi101126science1090718)

          172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

          Phil Trans R Soc B (2011)

          dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

          173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

          D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

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          from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

          175 Cifelli R L 1993 Theria of metatherianndasheutherian

          grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

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          177 Wible J R 1990 Late Cretaceous marsupial petrosal

          bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

          178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

          pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

          179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

          of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

          180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

          2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

          181 Beck R M Godthelp H Weisbecker V Archer M

          amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

          182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

          Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

          183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

          for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

          184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

          implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

          185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

          phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

          186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

          marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

          187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

          2502 M S Springer et al Mammalian historical biogeography

          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

          mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

          188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

          189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

          190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

          Phil Trans R Soc B (2011)

          Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

          191 Springer M S amp Krajewski C 2009 Monotremes

          (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

          192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

          53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

          In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

          194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

          • The historical biogeography of Mammalia
            • Introduction
            • Phylogeny reconstruction
            • Molecular dating analyses
            • Ancestral area reconstruction
            • Box 1
            • Ancestral area chronograms and palaeogeography
            • Placental phylogeny and a comparison of different ancestral area reconstruction methods
            • Placental biogeography
            • The importance of dispersal
            • Bat biogeography
            • Marsupial biogeography
            • Monotreme biogeography
            • Conclusions
            • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
            • REFERENCES

            2482 M S Springer et al Mammalian historical biogeography

            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

            ignore temporal information and may result frompseudo-congruence when taxonomic groups with thesame area relationships have different divergencetimes and presumably different underlying causes[48] Temporal information is critical for discriminat-ing between groups that diversified during the sametime period and therefore may have experienced thesame causal events and groups that diversifiedduring different time periods and require differentcausal explanations [48]

            Just as there may be multiple ancestral area chro-nograms for a taxonomic group there may also bemultiple palaeogeographical hypotheses regarding thehistory of connections of formerly connected land-masses For example the lsquopan-Gondwananrsquo andlsquoAfrica-firstrsquo hypotheses represent alternate scenariosfor the breakup of Gondwana [49] Both hypothesesagree that the initial rift was between the African com-ponent of West Gondwana (Africa South America)and the Indo-Madagascar component of EastGondwana although connections between Africa andIndo-Madagascar were maintained via South Amer-icandashAntarctica Subsequent to this initial rift the pan-Gondwanan hypothesis [50] postulates that three vicar-iant separations South America from Africa SouthAmerica from Antarctica and Antarctica from Indo-Madagascar all occurred during a narrow timewindow (100ndash90 Ma) The Africa-first hypothesis inturn suggests that Africa was the first Gondwanan con-tinent to become completely separated from otherGondwanan landmasses when it separated fromSouth America by approximately 100 Ma Indo-Mada-gascar separated from AntarcticandashAustralia atapproximately 130ndash110 Ma but maintained subaerialconnections with Antarctica via the Kerguelen Plateauand possibly the Gunnerus Ridge to the west well intothe Late Cretaceous (approx 80 Ma) The final separ-ation was between the Antarctica Peninsula and the tipof South America in the Eocene

            Krause et al [49] compared Cretaceous vertebratefaunas from different Gondwanan landmasses and con-cluded that palaeontological data are most compatiblewith a modified version of the Africa-first hypothesisKrause et alrsquos [49] work also illustrates how biogeographichypotheses based on fossils can be compared withgeology-based palaeogeographical hypotheses in anarena that allows for reciprocal illumination Thus ances-tral and general area chronograms provide a frameworkfor evaluating competing geology-based palaeogeo-graphical reconstructions just as geology-basedpalaeogeographical reconstructions provide a frameworkfor evaluating alternate ancestral area chronograms(figure 1) Krause et al [49] noted that there is no apriori reason to assume that geological data trumppalaeontological data or vice versa insofar as each typeof data can be used to reveal large-scale biogeographicpatterns

            6 PLACENTAL PHYLOGENY AND ACOMPARISON OF DIFFERENT ANCESTRALAREA RECONSTRUCTION METHODSMost placental orders have first fossil occurrences andprobable origins in Laurasia but there are also orders

            Phil Trans R Soc B (2011)

            with Gondwanan origins based on first fossil occur-rences in South America (Xenarthra) or Africa (mostafrotherian orders) Traditional morphologicalphylogenies [5152] have suggested close relationshipsbetween Laurasian and Gondwanan orders egEdentata (Xenarthra (Gondwanan) thorn Pholidota(Laurasian)) By contrast molecular phylogenies haverecovered three superordinal groups AfrotheriaLaurasiatheria and Euarchontoglires [353ndash63] thatwere not recovered on morphological trees Thesethree groups plus Xenarthra comprise the four majorclades of placental mammals There is also robust mol-ecular support for Boreoeutheria (EuarchontogliresthornLaurasiatheria) [60ndash6264] This overhaul of placentalphylogeny in conjunction with the results of moleculardating analyses laid the foundation for newbiogeographic hypotheses We discuss these in sect7 afterfirst comparing the results of different ancestralarea reconstruction methods in the remainder ofthis section

            Ancestral area chronograms were reconstructed for43 fully terrestrial placental taxa from Springer et al[3] Chiropterans and fully aquatic forms wereexcluded because of their different modes of dispersal(ie flight swimming) and also because most fullyaquatic taxa inhabit areas (ie oceans) that are notcontained in the four-area scheme used in our analyses(see below) Ancestral area chronograms were recon-structed using a ML phylogram obtained withRAXML [65] molecular divergence dates estimatedwith BEAST [6] and ancestral areas reconstructedwith a variety of methods

            Four areas (Africa Eurasia North America andSouth America) were recognized and two methodswere used to code areas for terminal taxa Firstareas were coded based on the geographical ranges ofextant species Second areas were coded based onthe geographical provenance of the oldest fossil foreach lineage The step matrix that was used in MACparsimony analysis is shown in figure 2 Given thatthe number of character states that are chosen for geo-graphical range subdivision is arbitrary it may beinstructive to compare the results of analyses withcoarser (eg Gondwana versus Laurasia) and finer(eg Europe and Asia instead of Eurasia) scales forarea coding although the analyses reported here areconfined to the four areas listed above

            We reconstructed ancestral areas using ninemethods (i) MAC parsimony (ii) Fitch parsimonywith multiple binary characters (FP-MBC) (iii) Fitchparsimony with a single multi-state character (FP-SMC) (iv) DIVA with no constraints on the maximumnumber of areas per node (v) DIVA with a maximumof two areas per node (DIVA-2) (vi) DEC with no con-straints on the maximum number of areas per node(vii) DEC with a maximum of two areas per node(DEC-2) (viii) stochastic mapping with multiplebinary characters (SM-MBC) and (ix) stochastic map-ping with a single multi-state character (SM-SMC)Ancestral area chronograms (MAC parsimony) basedon the geographical ranges of extant species and fossillineages are shown in figures 3 and 4 respectivelyTables 3 and 4 summarize the results of analyses withall nine methods

            0204060

            NeogeneQuaternary

            CenozoicPaleogene

            Ma

            Upper Miocene PP

            80

            Paleoc

            100

            OligEoceneCretaceousMesozoic

            Choloepus

            Tamandua

            MyrmecophagaEuphractus

            Chaetophractus

            Erinaceus

            Talpa

            Sorex

            Echinops

            Amblysomus

            Procavia

            Loxodonta

            MacroscelidesElephantulus

            Orycteropus

            Tamias

            Muscardinus

            Mus

            Rattus

            PedetesHystrix

            Castor

            Dipodomys

            CaviaHydrochaeris

            Erethizon

            SylvilagusOchotona

            Cynocephalus

            TupaiaLemur

            Homo

            Tarsius

            Hippopotamus

            Lama

            Tragelaphus

            Sus

            Equus

            Ceratotherium

            TapirusFelis

            Canis

            Manis

            Africa

            South America

            Eurasia

            North America

            Africa + EurasiaAfrica + North America

            1

            23

            4

            56

            7

            16

            17

            1819

            20

            2122

            23

            12

            13

            14

            15

            8

            9

            1011

            31

            32

            33

            34

            35

            36

            3738

            28

            2930

            2425

            26

            27

            4239

            41

            40

            Figure 3 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on extant ranges forterminal taxa RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times MAC parsi-mony was used to infer ancestral areas with the step matrix in figure 2 We employed soft constraints (nodes 3 8 10 16 19

            21 32 34 36 38 41) that followed a normal distribution with 95 of the normal distribution between the specified mini-mum and maximum constraints (table 1) Areas for extant taxa are enumerated in table 2 and are colour-coded as followsAfrica blue Eurasia green North America brown South America red Multi-coloured names denote taxa that occur inmore than one area (table 2) Nodes with unambiguous ancestral area reconstructions are shown with a single colouredcircle nodes with ambiguous reconstructions are shown with two or more circles and each coloured circle corresponds to

            a different reconstruction

            Mammalian historical biogeography M S Springer et al 2483

            Phil Trans R Soc B (2011)

            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

            Table 1 Fossil constraints Minimum ages are based on the age of the oldest unequivocal fossils belonging to the clade

            Maximum ages are based on the maximum of stratigraphic bounding [66] phylogenetic bracketing [6768] and phylogeneticuncertainty Stratigraphic bounding encompassed two successive underlying fossil-bearing deposits that did not contain anyfossils from the lineage of interest phylogenetic bracketing encompassed the age of the oldest fossils that were up to twonodes below the divergence event and phylogenetic bracketing allowed for the possibility that taxa of uncertain phylogeneticaffinities belong to the crown clade first outgroup or second outgroup Dates used in stratigraphic bounding are from

            Gradstein et al [69] We recognized the following chronological units in succession from youngest to oldest PleistocenePliocene Late Miocene Middle Miocene Early Miocene Late Oligocene Early Oligocene Late Eocene Middle EoceneEarly Eocene Late Palaeocene Middle Palaeocene Early Palaeocene Maastrichtian and Campanian

            node numbera

            fossil constraints (Ma)

            oldest fossil for minimum reference(s)minimum maximum

            3 556 712 Eritherium [70]8 585 712 Riostegotherium [6671]

            10 338 655 Antarctic specimenb [7273]16 611 842 Adunator [74]19 371 658 Hesperocyon gregarious [75ndash77]21 555 611 Hyracotherium [78]

            32 484 611 leporid tarsals [79]34 484 611 Eogliravus [80]36 338 56 Gaudeamus [8182]38 118 34 Prodolichotis [83]41 524 611 Mattimys [84]

            aNode numbers refer to figures 3 and 4bThe Eocene Antarctic specimen is an ungual phalanx that Carlini et al [72] identified as a megatheroid sloth Marenssi et al [85] revisedthe identification of the phalanx to include either Tardigrada (sloths) or Vermilingua (anteaters) Subsequently Vizcaıno amp Scillato-Yane[73] described a fragmentary tooth from the Eocene of Antarctica and referred this tooth to Tardigrada but MacPhee amp Reguero [86]reinterpreted this tooth fragment as Mammalia incertae sedis based on histological evidence

            2484 M S Springer et al Mammalian historical biogeography

            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

            Ambiguous ancestral area reconstructions were aproblem for all methods and the number of nodeswith equivocal reconstructions ranged from four(SM-SMC with extant coding) to 26 (DEC-2 withextant coding) For some methods the number ofambiguous nodes was higher with extant coding thanwith fossil coding (FP-MBC FP-SMC MAC parsi-mony DIVA DIVA-2 DEC DEC-2) but in othercases this pattern was reversed (SM-MBC SM-SMC) Ancestral areas for Placentalia Exafroplacenta-lia (frac14Boreoeutheria thorn Xenarthra) and several nodeswithin Rodentia were reconstructed as ambiguous bynearly all methods Other nodes were consistentlyreconstructed with unambiguous ancestral areasincluding clades with ancestral areas in Africa(Afrotheria and its internal nodes) Eurasia (Euarch-onta Paraprimates [frac14Dermoptera thorn Scandentia]Muridae) North America (Erinaceidae thorn Soricidae)and South America (Xenarthra and its internalnodes Cavioidea) Most analyses reconstructedEurasia as the ancestral area for BoreoeutheriaLaurasiatheria and Euarchontoglires This finding isdiscussed below

            The importance of fossils is illustrated by recon-structions for Lagomorpha (tables 3 and 4) Allmethods returned North America as the ancestralarea when extant taxa were used for area coding butidentified Eurasia with fossil coding

            DIVA and DEC analyses reconstructed more nodeswith multiple areas than did the other methodsAnalyses with DEC reconstructed 17ndash20 nodes withtwo or more areas and four to six nodes with threeor more areas DIVA analyses resulted in 15ndash18

            Phil Trans R Soc B (2011)

            nodes with at least two areas and five to six nodeswith three or more areas None of the other methodsreconstructed ancestral nodes to include three ormore areas in a single reconstruction although threeor four areas were sometimes represented by thefull complement of alternate reconstructions for agiven node

            FP-MBC returned nine empty nodes with extantcoding and five empty areas with fossil coding SM-MBC with extant coding resulted in three or fourempty nodes with extant coding and four emptynodes with extinct coding (table 5)

            7 PLACENTAL BIOGEOGRAPHYAfrotheria (Afrosoricida Hyracoidea MacroscelideaProboscidea Sirenia Tubulidentata) was the first ofthe new superordinal groups to receive robust molecu-lar support [535556] With the exception of Sireniaall afrotherian orders have first fossil occurrences inAfrica and two orders (Macroscelidea Afrosoricida)have evolutionary histories that are restricted to theAfro-Malagasy region Springer et al [53] suggestedthat interordinal separation of afrotherian orders com-menced during a window of isolation that began in theCretaceous after Africa separated from South Amer-ica and lasted until the early Cenozoic when Africadocked with Europe Consistent with this scenarioAfrica was unambiguously reconstructed as the ances-tral area for Afrotheria (figures 3 and 4) Thishypothesis contrasts with traditional views whereinthe African mammal fauna arrived from the northincluding a condylarth stock that arrived in Africa

            Table 2 Geographical area of extant taxa and oldest fossils used in ancestral area reconstruction

            taxona area of extant species area of oldest fossilb

            Choloepus didactylus SA SA Megalonychidae Miocene [87]Tamandua tetradactyla SA SA Tamandua Pleistocene [87]

            Myrmecophaga tridactyla SA SA Neotamandua Miocene [8788]Euphractus sexcinctus SA SA Zaedyus Pliocene [8789]Chaetophractus villosus SA SA Chaetophractus Pliocene [90]Erinaceus europaeus Eurasia NA Adunator Palaeocene [74]Talpa altaica Eurasia Eurasia Eotalpa Eocene [91]

            Sorex araneus Eurasia NA Domnina Eocene [92]Echinops telfairi Africa Africa Widanelfarasia Eocene [93]Amblysomus hottentotus Africa Africa Eochrysochloris Oligocene [93]Procavia capensis Africa Africa Seggeurius Eocene [94]

            Loxodonta africana Africa Africa Eritherium Palaeocene [70]Macroscelides proboscideus Africa Africa Macroscelides Pliocene [95]Elephantulus rufescens Africa Africa Elephantulus Pliocene [95]Orycteropus afer Africa Africa Orycteropus Miocene [96]Tamias striatus NA NA Spurimus Eocene [97]

            Muscardinus avellanarius Eurasia Eurasia Eogliravus Eocene [80]Mus musculus Eurasia Eurasia Progonomys Miocene [74]Rattus norvegicus Eurasia Eurasia Karnimata Miocene [74]Pedetes capensis Africa Africa Pondaungimys Eocene [98]Hystrix brachyurus Eurasia Africa Gaudeamus Eocene [81]

            Castor canadensis NA NA Mattimys Eocene [84]Dipodomys merriami NA NA Proheteromys Oligocene [99]Cavia porcellus SA SA Prodolichotis Miocene [83100]Hydrochaeris hydrochaeris SA SA Cardiatherium Miocene [101]Erethizon dorsatum NA SA Eopululo Eocene [102]

            Sylvilagus floridanus NA SA Eurasia tarsal elements Eocene [79]Ochotona princeps NA Eurasia Sinolagomys Oligocene [103104]Cynocephalus variegatus Eurasia Eurasia Dermotherium Eocene [105]Tupaia minor Eurasia Eurasia Eodendrogale Eocene [106]Lemur catta Africa Africa Pachylemur Quaternary [107]

            Homo sapiens Eurasia NA SA Africa Eurasia Anthrasimias Palaeocene [108]Tarsius syrichta Eurasia Eurasia Tarsius Eocene [109]Hippopotamus amphibius Africa Africa Morotochoerus Miocene [110]Lama glama SA NA Poebrodon Eocene [111]

            Tragelaphus eurycerus Africa Eurasia Archaeomeryx Eocene [112]Sus scrofa Eurasia Africa Eurasia Eocenchoerus Eocene [113]Equus caballus Eurasia Eurasia NA Hyracotherium Eocene [78114115]Ceratotherium simum Africa NA Hyracodontidae Eocene [116]Tapirus indicus Eurasia NA Helaletes Eocene [117]

            Felis catus Africa Eurasia Stenoplesictis Eocene [118119]Canis familiaris Eurasia NA Hesperocyon Eocene [120]Manis pentadactyla Eurasia Eurasia Eomanis Eocene [121]

            aIn cases of chimeric taxa we used the most common species from Springer et alrsquos [3] concatenated supermatrix NA North AmericaSA South AmericabArea of the oldest stem fossil belonging to the terminal branch represented by each living taxon

            Mammalian historical biogeography M S Springer et al 2485

            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

            from Europe in the early Cenozoic and insectivoresthat arrived in the Neogene [124]

            Asher et al [125] Zack et al [126] and Tabuce et al[127] suggested that the geographical distributions ofliving afrotherians are not representative of the histori-cal geographical distribution of this clade and thatAfrotheria is Holarctic in origin based on the place-ment of extinct taxa from the Palaeocene of Laurasiawithin or at the base of Afrotheria However pseu-doextinction tests call into question the reliability ofthe placement of fossil taxa in morphological cladisticanalyses [3]

            The oldest xenarthran fossils are scutes from thePalaeocene of South America [71] Living membersof Xenarthra (anteaters sloths armadillos) are

            Phil Trans R Soc B (2011)

            restricted to South and Central America with theexception of the nine-banded armadillo whose ances-tors dispersed to North America during the GreatAmerican Interchange [128] Simpson [129130] sup-ported the view that South American xenarthransevolved in situ during South Americarsquos isolation fromother continents in the early Tertiary All of our ana-lyses are consistent with the hypothesis that SouthAmerica was the ancestral area for Xenarthra (figures3 and 4)

            The remaining placental orders are placed in Laur-asiatheria (Eulipotyphla Chiroptera PerissodactylaCetartiodactyla Carnivora Pholidota) and Euarchon-toglires (Primates Dermoptera Scandentia RodentiaLagomorpha) With the exception of bats these orders

            0204060

            NeogeneQuaternary

            Cenozoic

            Paleogene

            Ma

            Upper Miocene PP

            80

            Paleoc

            100

            OligEoceneCretaceousMesozoic

            Choloepus

            Tamandua

            MyrmecophagaEuphractus

            Chaetophractus

            Erinaceus

            Talpa

            Sorex

            Echinops

            Amblysomus

            Procavia

            Loxodonta

            MacroscelidesElephantulus

            Orycteropus

            Tamias

            Muscardinus

            Mus

            Rattus

            PedetesHystrix

            Castor

            Dipodomys

            CaviaHydrochaeris

            Erethizon

            SylvilagusOchotona

            Cynocephalus

            TupaiaLemur

            Homo

            Tarsius

            Hippopotamus

            Lama

            Tragelaphus

            Sus

            Equus

            Ceratotherium

            TapirusFelis

            Canis

            Manis

            Africa

            South America

            Eurasia

            North America

            Africa + EurasiaAfrica + North AmericaEurasia + North America

            1

            23

            4

            56

            7

            16

            17

            1819

            20

            2122

            23

            12

            13

            14

            15

            8

            9

            1011

            31

            32

            33

            34

            35

            36

            3738

            28

            2930

            2425

            26

            27

            4239

            41

            40

            Figure 4 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on the oldest fossil foreach lineage RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times and MAC par-simony was used to infer ancestral areas with the step matrix in figure 2 Areas for the oldest fossil lineage are enumerated intable 2 and are colour-coded as follows Africa blue Eurasia green North America brown South America red Nodes with

            unambiguous ancestral area reconstructions are shown with a single coloured circle nodes with ambiguous reconstructions areshown with two or more circles and each coloured circle corresponds to a different reconstruction

            2486 M S Springer et al Mammalian historical biogeography

            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

            have first fossil occurrences that are exclusively Laura-sian Our reconstructions provide support for Eurasiabut not North America as the ancestral area for theseclades (figures 3 and 4) These results are consistent

            Phil Trans R Soc B (2011)

            with previous suggestions that Cretaceous zhelestidsand zamlambdalestids from Asia are members ofcrown Placentalia [131132] Further the fossilrecord suggests that Eutheria were dominant in

            Tab

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            000

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            01

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            08

            1

            00

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            ou

            se-r

            elat

            edcl

            ad

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            35

            0000

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            1000

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            07

            6

            07

            6

            03

            2

            00

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            9

            06

            9

            00

            0

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            000

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            00

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            00

            4

            07

            1

            00

            6H

            ystr

            icogn

            ath

            i1000

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            i36

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            00

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            01

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            500

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            00

            0

            00

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            02

            602

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            00

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            00

            3

            06

            70100

            0100

            0001

            0001

            Cav

            iom

            orp

            ha

            37

            0001

            0001

            0001

            0001

            0001

            00

            0

            00

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            00

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            0

            00

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            38

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            00

            1

            00

            0

            2490 M S Springer et al Mammalian historical biogeography

            Phil Trans R Soc B (2011)

            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

            Table 5 Comparison of different methods for reconstructing ancestral areas NA1 not applicable for monomorphic

            reconstruction methods NA2 not applicable when the maximum number of areas is set at two NA2 not applicable formethods that employ single multistate charactersa

            FP-MBC FP-SMCMACParsimony DIVA DIVA-2 DEC DEC-2 SM-MBC SM-SMC

            nodes with ambiguous 75 129 128 1211 107 2323 2623 1617 614reconstructionsb 1920 1718 1012 410

            nodes with 2 areasc 33 NA1 46 1618 1516 1820 2019 77 NA11720 1717 46

            nodes with 3 areasd 00 NA1 00 65 NA2 66 NA2 00 NA145 00

            empty nodese 95 NA3 NA3 NA3 NA3 NA3 NA3 34 NA344

            aNumbers before slashes are based on analyses with area coding for extant taxa and numbers after slashes are based on analyses with areacoding for the oldest fossil See table 3 for abbreviationsbFor FP-MBC nodes were considered ambiguous if at least one area was reconstructed as (01) For SM-MBC and SM-SMC nodes wereconsidered ambiguous if the posterior probability (PP) of at least one area was 01 PP 09 (top line) or 02 PP 08 (bottom line)For DEC and DEC-2 nodes were considered ambiguous if the frequency ( f ) of at least one area was 01 f 09 (top line) or 02 p 08 (bottom line)cAt least two areas in at least one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) was takento include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line) or020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02 (bottomline)dAt least three areas in more than one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) wastaken to include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line)or 020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02(bottom line)eFor FP-MBC nodes were considered empty if all areas were reconstructed as 0 For SM-MBC nodes were considered empty if posteriorprobabilities were 010 (top line) or 020 (bottom line) for all four areas

            Mammalian historical biogeography M S Springer et al 2491

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            Eurasia throughout the Cretaceous but were absentfrom North America through much of the Late Cre-taceous and only attained appreciable diversity thereduring the last approximately 10 Myr of the period[133134] Boyer et al [135] concluded that theIndian subcontinent Eurasia and Africa are morelikely places of origin for Euarchonta than is NorthAmerica This agrees with our ancestral areareconstructions (figures 3 4 and tables 3 4)

            Although there is robust support for the monophylyof Xenarthra Afrotheria and Boreoeutheria relation-ships among these three groups and the root of theplacental tree remain contentious [105460ndash63136]Murphy et al [62] and Springer et al [10] suggested acausal relationship between the sundering of Africa andSouth America and basal cladogenesis among crown-group placental mammals given the coincidence ofmolecular dates for the base of placentals and thevicariant separation of Africa and South Americaapproximately 100ndash120 Ma

            Asher et al [125] analysed a combined matrix andrecovered Afrotheria in a nested position within Pla-centalia which contradicts the hypothesis that theplate tectonic separation of Africa and South Americaplayed a causal role in the early cladogenesis of placen-tal mammals However the nested position forAfrotheria resulted from the paraphyly of Euarchonto-glires Glires and Rodentia Rare genomic changesconfirm the monophyly of Xenarthra [137] Afrotheria[138ndash142] Euarchontoglires [139141142] Laura-siatheria [139141142] and Boreoeutheria[139141142] and preclude a nested position forAfrotheria in the placental tree

            Rare genomic changes have also been used toexamine the position of the placental root Kriegs

            Phil Trans R Soc B (2011)

            et al [139] reported LINE insertions that are sharedby Epitheria whereas Murphy et al [16] discoveredrare genomic changes that support AtlantogenataNishihara et al [142] performed genome-wide retro-poson analyses and found 22 25 and 21 LINEinsertions for Exafroplacentalia Epitheria and Atlan-togenata respectively Based on these resultsNishihara et al [142] concluded that XenarthraAfrotheria and Boreoeutheria diverged from oneanother nearly simultaneously They also suggested anew palaeogeographical model for the breakup of Pan-gaea and Gondwana in which Africa becomes isolatedfrom both South America and Laurasia at approxi-mately 120 Ma and argued that these coeval platetectonic events provide an explanation for the simul-taneous divergence of Afrotheria Xenarthra andBoreoeutheria However relaxed clock dates for thebase of Placentalia are closer to 100 Ma than to120 Ma (figures 3 and 4) A second difficulty concernsthe opening of the South Atlantic Nishihara et al[142] suggested that the Brazilian Bridge which rep-resented the last connection between Africa andSouth America was severed at approximately120 Mya but other recent reconstructions suggestthat the connection between the South Atlantic andCentral Atlantic was not established until lateAptianmid-Albian times (approx 110ndash100 Ma)[143144]

            8 THE IMPORTANCE OF DISPERSALIn the context of pre-plate tectonic views of theEarth Simpson [2] proposed three types ofmigration routes to describe the movement of ani-mals corridors filter bridges and sweepstakes

            Africa

            Mad

            agas

            car

            Tanzania

            Mozambique

            N

            100 mi

            Figure 5 Present day surface ocean currents in the Mozam-bique Channel (solid arrows) are southndashsouthwest andwould not have facilitated west to east transoceanic dispersalfrom Africa to Madagascar [153] By contrast westerly sur-face ocean currents in the Eocene (dashed arrows) would

            have facilitated dispersal across the Mozambique Channelfrom Africa to Madagascar especially during tropicalstorms [154] The outline of Madagascar with dashed linesshows its approximate position relative to Africa during theEocene

            2492 M S Springer et al Mammalian historical biogeography

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            dispersal Corridors connect two areas and are per-meable to all animals filter bridges impose selectivebarriers that affect some but not all animals andsweepstakes dispersal is required when there arestrong barriers to migration such as high mountainbarriers or oceans

            Simpson [2] suggested that Madagascarrsquos livingmammals were the product of sweepstakes dispersalfrom Africa to Madagascar Sweepstakes dispersalhypotheses fell out of favour with the validation ofplate tectonic theory and were summarily dismissedas lsquomiraculousrsquo hypotheses with no scientific basis[145] However it has become apparent that some dis-tributional patterns can only be explained bysweepstakes dispersal [146] Observational data alsoprovide support for long-distance vertebrate dispersal[147] Examples of low probability sweepstakes disper-sal involving mammals include the origins of theendemic mammal fauna in Madagascar and theoccurrence of caviomorph rodents and platyrrhine pri-mates in South America

            Madagascarrsquos strictly terrestrial extant mammal faunaincludes endemic lineages from four placental orderstenrecs (Afrosoricida) euplerids (Carnivora) neso-myines (Rodentia) and lemurs (Primates) In eachlineage Madagascar endemics comprise monophyleticassemblages with closest living relatives in Africa[148149] Madagascar separated from Africa approxi-mately 165 Ma but maintained its connection withAntarctica via the Kerguelen Plateau until as late as80 Ma at which time it became permanentlyseparated from other Gondwanan landmasses This his-tory suggests that Madagascarrsquos terrestrial endemicmammals are either the ancient descendants of vicariantevents that occurred prior to 80 Ma or reached Mada-gascar via transoceanic sweepstakes dispersal at a latertime Another possibility is that a land bridge connectedAfrica and Madagascar between 45 and 26 Ma [150]

            Molecular divergence dates suggest that all fourendemic lineages last shared a common ancestorwith their African sister group in the Cenozoic[148149151152] Poux et al [148] concluded thatdispersal by lemurs rodents and carnivorans musthave occurred by transoceanic dispersal rather thanland bridge dispersal based on molecular dates forthe colonization of Madagascar that were outside ofthe land bridge window ie 60ndash50 Ma for lemurs26ndash19 Ma for carnivorans and 24ndash20 Ma for rodentsHowever present ocean currents allow for dispersalfrom Madagascar to Africa but oppose reciprocal dis-persal from Africa to Madagascar across theMozambique Channel If ocean currents were thesame for most of the Cenozoic as they are todaythey would not have facilitated west to east transocea-nic dispersal across the Mozambique Channel becauseof the strong southndashsouthwest flow of the Mozambi-que Current [153]

            Ali amp Huber [154] addressed this problem by simu-lating surface ocean currents in the Indian Oceanduring the Eocene They concluded that large-scaleocean current systems in the Eocene were profoundlydifferent from modern observed circulatory patternsand that the flow along the African coast was eastwardtowards Madagascar instead of southward through the

            Phil Trans R Soc B (2011)

            Mozambique Channel (figure 5) Ali amp Huber [154]further suggested that dispersal probabilities wereenhanced by tropical storms that (i) generated largefloating tree islands that would have allowed for asuccessful oceanic voyage and (ii) acceleratedtransportation rates from Africa to Madagascar thatwould have allowed for complete crossing of theMozambique Channel in 25ndash30 days

            The dispersal of four groups of fully terrestrialmammals from Africa to Madagascar at a time whenthere was no land bridge is a testament to the impor-tance of rare sweepstakes events in the evolutionaryhistory of Placentalia Even more remarkable is theoccurrence of two different groups of placental mam-mals hystricognath rodents and anthropoid primatesin Africa and South America

            Hystricognathi includes Hystricidae (Old World por-cupines) and Phiomorpha (eg cane rats dassie rats)from the Old World and Caviomorpha (eg porcupineschinchillas) from the New World The oldest hystricog-naths are from the late Eocene Egypt and have beendated at approximately 37 Ma [81] Old World hystri-cognaths are paraphyletic usually with phiomorphshaving closer phylogenetic affinities to South Americancaviomorphs than to hystricids [14155156] Relaxedclock dates suggest that South American caviomorphslast shared a common ancestor with phiomorphsbetween 45 and 36 Ma [81155157] The most recentcommon ancestor of Caviomorpha has been dated at45ndash31 Ma [81155157158]

            PacificOcean

            NorthAtlanticOcean

            SouthAtlantic Ocean

            IndianOcean

            NorthAmerica

            SouthAmerica

            Africa

            Antarctica

            Australia

            Asia

            Europe

            PacificOcean1b

            1b

            1a3

            2

            Middle Eocene

            Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

            South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

            Mammalian historical biogeography M S Springer et al 2493

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            Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

            The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

            Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

            Phil Trans R Soc B (2011)

            phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

            9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

            The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

            Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

            or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

            node number (figure 7) Eick et al [12] re-analysis

            1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

            ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

            3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

            4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

            9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

            10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

            11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

            12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

            ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

            13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

            ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

            BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

            14 A A B C AC BC ABC15 A A B C AC BC

            16 A A B C17 A A B AC BC ABC

            2494 M S Springer et al Mammalian historical biogeography

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            and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

            We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

            Phil Trans R Soc B (2011)

            Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

            FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

            1

            2

            3

            4

            56

            7

            8

            9

            10

            11

            1213

            14

            1516

            17

            EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

            Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

            Mammalian historical biogeography M S Springer et al 2495

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            with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

            10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

            In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

            Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

            Phil Trans R Soc B (2011)

            sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

            In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

            11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

            In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

            With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

            12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

            2496 M S Springer et al Mammalian historical biogeography

            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

            together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

            MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

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            15 Janecka J E Miller W Pringle T H Wiens FZitzmann A Helgen K M Springer M S amp

            Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

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            23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

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            Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

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            Phil Trans R Soc B (2011)

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            American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

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            1023A1020512529767)89 Galliari F C Carlini A A amp Sanchez-Villagra M R

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            amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

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            Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

            99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

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            tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

            Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

            Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

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            Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

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            record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

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            Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

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            Press108 Bajpai S Kay R F Williams B A Das D P

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            Phil Trans R Soc B (2011)

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            604ndash609 (doi101038368604a0)110 Orliac M Boisserie J-R MacLatchy L amp Lihoreau

            F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

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            The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

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            E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

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            ary Science 295 2062ndash2065 (doi101126science1068700)

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            earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

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            128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

            129 Simpson G G 1951 History of the fauna of Latin

            America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

            130 Simpson G G 1978 Early mammals in South Amer-ica fact controversy and mystery Proc Am PhilSoc 122 318ndash328

            131 Archibald J D 1996 Fossil evidence for a Late Cretac-eous origin of lsquohoofedrsquo mammals Science 272 1150ndash1153 (doi101126science27252651150)

            132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

            133 Cifelli R L amp Davis B M 2003 Marsupial origins

            Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

            2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

            135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

            eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

            136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

            pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

            W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

            260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

            N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

            139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

            Phil Trans R Soc B (2011)

            140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

            141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

            0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

            roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

            of mammals Proc Natl Acad Sci USA 106 5235ndash5240

            143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

            144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

            145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

            146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

            73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

            dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

            148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

            108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

            dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

            37091305110239)150 McCall R 1997 Implications of recent geological

            investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

            151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

            152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

            153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

            154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

            155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

            caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

            156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

            Mammalian historical biogeography M S Springer et al 2501

            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

            revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

            157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

            158 Rowe D L Dunn K A Adkins R M amp Honeycutt

            R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

            159 Beard K C Wang B Dawson M Huang X amp

            Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

            160 Beard K C amp Wang J 2004 The eosimiid primates

            (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

            161 Arnason U Gullberg A Schweizer B A amp Janke A

            2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

            162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

            163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

            164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

            513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

            ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

            AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

            diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

            167 Gunnell G F amp Simmons N B 2005 Fossil evidence

            and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

            168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

            Wyoming and the evolution of flight and echolocationNature 451 818ndash822

            169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

            paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

            170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

            171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

            ian evolution Science 302 1934ndash1939 (doi101126science1090718)

            172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

            Phil Trans R Soc B (2011)

            dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

            173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

            D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

            174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

            from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

            175 Cifelli R L 1993 Theria of metatherianndasheutherian

            grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

            176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

            177 Wible J R 1990 Late Cretaceous marsupial petrosal

            bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

            178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

            pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

            179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

            of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

            180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

            2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

            181 Beck R M Godthelp H Weisbecker V Archer M

            amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

            182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

            Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

            183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

            for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

            184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

            implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

            185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

            phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

            186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

            marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

            187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

            2502 M S Springer et al Mammalian historical biogeography

            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

            mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

            188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

            189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

            190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

            Phil Trans R Soc B (2011)

            Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

            191 Springer M S amp Krajewski C 2009 Monotremes

            (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

            192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

            53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

            In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

            194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

            • The historical biogeography of Mammalia
              • Introduction
              • Phylogeny reconstruction
              • Molecular dating analyses
              • Ancestral area reconstruction
              • Box 1
              • Ancestral area chronograms and palaeogeography
              • Placental phylogeny and a comparison of different ancestral area reconstruction methods
              • Placental biogeography
              • The importance of dispersal
              • Bat biogeography
              • Marsupial biogeography
              • Monotreme biogeography
              • Conclusions
              • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
              • REFERENCES

              0204060

              NeogeneQuaternary

              CenozoicPaleogene

              Ma

              Upper Miocene PP

              80

              Paleoc

              100

              OligEoceneCretaceousMesozoic

              Choloepus

              Tamandua

              MyrmecophagaEuphractus

              Chaetophractus

              Erinaceus

              Talpa

              Sorex

              Echinops

              Amblysomus

              Procavia

              Loxodonta

              MacroscelidesElephantulus

              Orycteropus

              Tamias

              Muscardinus

              Mus

              Rattus

              PedetesHystrix

              Castor

              Dipodomys

              CaviaHydrochaeris

              Erethizon

              SylvilagusOchotona

              Cynocephalus

              TupaiaLemur

              Homo

              Tarsius

              Hippopotamus

              Lama

              Tragelaphus

              Sus

              Equus

              Ceratotherium

              TapirusFelis

              Canis

              Manis

              Africa

              South America

              Eurasia

              North America

              Africa + EurasiaAfrica + North America

              1

              23

              4

              56

              7

              16

              17

              1819

              20

              2122

              23

              12

              13

              14

              15

              8

              9

              1011

              31

              32

              33

              34

              35

              36

              3738

              28

              2930

              2425

              26

              27

              4239

              41

              40

              Figure 3 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on extant ranges forterminal taxa RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times MAC parsi-mony was used to infer ancestral areas with the step matrix in figure 2 We employed soft constraints (nodes 3 8 10 16 19

              21 32 34 36 38 41) that followed a normal distribution with 95 of the normal distribution between the specified mini-mum and maximum constraints (table 1) Areas for extant taxa are enumerated in table 2 and are colour-coded as followsAfrica blue Eurasia green North America brown South America red Multi-coloured names denote taxa that occur inmore than one area (table 2) Nodes with unambiguous ancestral area reconstructions are shown with a single colouredcircle nodes with ambiguous reconstructions are shown with two or more circles and each coloured circle corresponds to

              a different reconstruction

              Mammalian historical biogeography M S Springer et al 2483

              Phil Trans R Soc B (2011)

              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

              Table 1 Fossil constraints Minimum ages are based on the age of the oldest unequivocal fossils belonging to the clade

              Maximum ages are based on the maximum of stratigraphic bounding [66] phylogenetic bracketing [6768] and phylogeneticuncertainty Stratigraphic bounding encompassed two successive underlying fossil-bearing deposits that did not contain anyfossils from the lineage of interest phylogenetic bracketing encompassed the age of the oldest fossils that were up to twonodes below the divergence event and phylogenetic bracketing allowed for the possibility that taxa of uncertain phylogeneticaffinities belong to the crown clade first outgroup or second outgroup Dates used in stratigraphic bounding are from

              Gradstein et al [69] We recognized the following chronological units in succession from youngest to oldest PleistocenePliocene Late Miocene Middle Miocene Early Miocene Late Oligocene Early Oligocene Late Eocene Middle EoceneEarly Eocene Late Palaeocene Middle Palaeocene Early Palaeocene Maastrichtian and Campanian

              node numbera

              fossil constraints (Ma)

              oldest fossil for minimum reference(s)minimum maximum

              3 556 712 Eritherium [70]8 585 712 Riostegotherium [6671]

              10 338 655 Antarctic specimenb [7273]16 611 842 Adunator [74]19 371 658 Hesperocyon gregarious [75ndash77]21 555 611 Hyracotherium [78]

              32 484 611 leporid tarsals [79]34 484 611 Eogliravus [80]36 338 56 Gaudeamus [8182]38 118 34 Prodolichotis [83]41 524 611 Mattimys [84]

              aNode numbers refer to figures 3 and 4bThe Eocene Antarctic specimen is an ungual phalanx that Carlini et al [72] identified as a megatheroid sloth Marenssi et al [85] revisedthe identification of the phalanx to include either Tardigrada (sloths) or Vermilingua (anteaters) Subsequently Vizcaıno amp Scillato-Yane[73] described a fragmentary tooth from the Eocene of Antarctica and referred this tooth to Tardigrada but MacPhee amp Reguero [86]reinterpreted this tooth fragment as Mammalia incertae sedis based on histological evidence

              2484 M S Springer et al Mammalian historical biogeography

              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

              Ambiguous ancestral area reconstructions were aproblem for all methods and the number of nodeswith equivocal reconstructions ranged from four(SM-SMC with extant coding) to 26 (DEC-2 withextant coding) For some methods the number ofambiguous nodes was higher with extant coding thanwith fossil coding (FP-MBC FP-SMC MAC parsi-mony DIVA DIVA-2 DEC DEC-2) but in othercases this pattern was reversed (SM-MBC SM-SMC) Ancestral areas for Placentalia Exafroplacenta-lia (frac14Boreoeutheria thorn Xenarthra) and several nodeswithin Rodentia were reconstructed as ambiguous bynearly all methods Other nodes were consistentlyreconstructed with unambiguous ancestral areasincluding clades with ancestral areas in Africa(Afrotheria and its internal nodes) Eurasia (Euarch-onta Paraprimates [frac14Dermoptera thorn Scandentia]Muridae) North America (Erinaceidae thorn Soricidae)and South America (Xenarthra and its internalnodes Cavioidea) Most analyses reconstructedEurasia as the ancestral area for BoreoeutheriaLaurasiatheria and Euarchontoglires This finding isdiscussed below

              The importance of fossils is illustrated by recon-structions for Lagomorpha (tables 3 and 4) Allmethods returned North America as the ancestralarea when extant taxa were used for area coding butidentified Eurasia with fossil coding

              DIVA and DEC analyses reconstructed more nodeswith multiple areas than did the other methodsAnalyses with DEC reconstructed 17ndash20 nodes withtwo or more areas and four to six nodes with threeor more areas DIVA analyses resulted in 15ndash18

              Phil Trans R Soc B (2011)

              nodes with at least two areas and five to six nodeswith three or more areas None of the other methodsreconstructed ancestral nodes to include three ormore areas in a single reconstruction although threeor four areas were sometimes represented by thefull complement of alternate reconstructions for agiven node

              FP-MBC returned nine empty nodes with extantcoding and five empty areas with fossil coding SM-MBC with extant coding resulted in three or fourempty nodes with extant coding and four emptynodes with extinct coding (table 5)

              7 PLACENTAL BIOGEOGRAPHYAfrotheria (Afrosoricida Hyracoidea MacroscelideaProboscidea Sirenia Tubulidentata) was the first ofthe new superordinal groups to receive robust molecu-lar support [535556] With the exception of Sireniaall afrotherian orders have first fossil occurrences inAfrica and two orders (Macroscelidea Afrosoricida)have evolutionary histories that are restricted to theAfro-Malagasy region Springer et al [53] suggestedthat interordinal separation of afrotherian orders com-menced during a window of isolation that began in theCretaceous after Africa separated from South Amer-ica and lasted until the early Cenozoic when Africadocked with Europe Consistent with this scenarioAfrica was unambiguously reconstructed as the ances-tral area for Afrotheria (figures 3 and 4) Thishypothesis contrasts with traditional views whereinthe African mammal fauna arrived from the northincluding a condylarth stock that arrived in Africa

              Table 2 Geographical area of extant taxa and oldest fossils used in ancestral area reconstruction

              taxona area of extant species area of oldest fossilb

              Choloepus didactylus SA SA Megalonychidae Miocene [87]Tamandua tetradactyla SA SA Tamandua Pleistocene [87]

              Myrmecophaga tridactyla SA SA Neotamandua Miocene [8788]Euphractus sexcinctus SA SA Zaedyus Pliocene [8789]Chaetophractus villosus SA SA Chaetophractus Pliocene [90]Erinaceus europaeus Eurasia NA Adunator Palaeocene [74]Talpa altaica Eurasia Eurasia Eotalpa Eocene [91]

              Sorex araneus Eurasia NA Domnina Eocene [92]Echinops telfairi Africa Africa Widanelfarasia Eocene [93]Amblysomus hottentotus Africa Africa Eochrysochloris Oligocene [93]Procavia capensis Africa Africa Seggeurius Eocene [94]

              Loxodonta africana Africa Africa Eritherium Palaeocene [70]Macroscelides proboscideus Africa Africa Macroscelides Pliocene [95]Elephantulus rufescens Africa Africa Elephantulus Pliocene [95]Orycteropus afer Africa Africa Orycteropus Miocene [96]Tamias striatus NA NA Spurimus Eocene [97]

              Muscardinus avellanarius Eurasia Eurasia Eogliravus Eocene [80]Mus musculus Eurasia Eurasia Progonomys Miocene [74]Rattus norvegicus Eurasia Eurasia Karnimata Miocene [74]Pedetes capensis Africa Africa Pondaungimys Eocene [98]Hystrix brachyurus Eurasia Africa Gaudeamus Eocene [81]

              Castor canadensis NA NA Mattimys Eocene [84]Dipodomys merriami NA NA Proheteromys Oligocene [99]Cavia porcellus SA SA Prodolichotis Miocene [83100]Hydrochaeris hydrochaeris SA SA Cardiatherium Miocene [101]Erethizon dorsatum NA SA Eopululo Eocene [102]

              Sylvilagus floridanus NA SA Eurasia tarsal elements Eocene [79]Ochotona princeps NA Eurasia Sinolagomys Oligocene [103104]Cynocephalus variegatus Eurasia Eurasia Dermotherium Eocene [105]Tupaia minor Eurasia Eurasia Eodendrogale Eocene [106]Lemur catta Africa Africa Pachylemur Quaternary [107]

              Homo sapiens Eurasia NA SA Africa Eurasia Anthrasimias Palaeocene [108]Tarsius syrichta Eurasia Eurasia Tarsius Eocene [109]Hippopotamus amphibius Africa Africa Morotochoerus Miocene [110]Lama glama SA NA Poebrodon Eocene [111]

              Tragelaphus eurycerus Africa Eurasia Archaeomeryx Eocene [112]Sus scrofa Eurasia Africa Eurasia Eocenchoerus Eocene [113]Equus caballus Eurasia Eurasia NA Hyracotherium Eocene [78114115]Ceratotherium simum Africa NA Hyracodontidae Eocene [116]Tapirus indicus Eurasia NA Helaletes Eocene [117]

              Felis catus Africa Eurasia Stenoplesictis Eocene [118119]Canis familiaris Eurasia NA Hesperocyon Eocene [120]Manis pentadactyla Eurasia Eurasia Eomanis Eocene [121]

              aIn cases of chimeric taxa we used the most common species from Springer et alrsquos [3] concatenated supermatrix NA North AmericaSA South AmericabArea of the oldest stem fossil belonging to the terminal branch represented by each living taxon

              Mammalian historical biogeography M S Springer et al 2485

              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

              from Europe in the early Cenozoic and insectivoresthat arrived in the Neogene [124]

              Asher et al [125] Zack et al [126] and Tabuce et al[127] suggested that the geographical distributions ofliving afrotherians are not representative of the histori-cal geographical distribution of this clade and thatAfrotheria is Holarctic in origin based on the place-ment of extinct taxa from the Palaeocene of Laurasiawithin or at the base of Afrotheria However pseu-doextinction tests call into question the reliability ofthe placement of fossil taxa in morphological cladisticanalyses [3]

              The oldest xenarthran fossils are scutes from thePalaeocene of South America [71] Living membersof Xenarthra (anteaters sloths armadillos) are

              Phil Trans R Soc B (2011)

              restricted to South and Central America with theexception of the nine-banded armadillo whose ances-tors dispersed to North America during the GreatAmerican Interchange [128] Simpson [129130] sup-ported the view that South American xenarthransevolved in situ during South Americarsquos isolation fromother continents in the early Tertiary All of our ana-lyses are consistent with the hypothesis that SouthAmerica was the ancestral area for Xenarthra (figures3 and 4)

              The remaining placental orders are placed in Laur-asiatheria (Eulipotyphla Chiroptera PerissodactylaCetartiodactyla Carnivora Pholidota) and Euarchon-toglires (Primates Dermoptera Scandentia RodentiaLagomorpha) With the exception of bats these orders

              0204060

              NeogeneQuaternary

              Cenozoic

              Paleogene

              Ma

              Upper Miocene PP

              80

              Paleoc

              100

              OligEoceneCretaceousMesozoic

              Choloepus

              Tamandua

              MyrmecophagaEuphractus

              Chaetophractus

              Erinaceus

              Talpa

              Sorex

              Echinops

              Amblysomus

              Procavia

              Loxodonta

              MacroscelidesElephantulus

              Orycteropus

              Tamias

              Muscardinus

              Mus

              Rattus

              PedetesHystrix

              Castor

              Dipodomys

              CaviaHydrochaeris

              Erethizon

              SylvilagusOchotona

              Cynocephalus

              TupaiaLemur

              Homo

              Tarsius

              Hippopotamus

              Lama

              Tragelaphus

              Sus

              Equus

              Ceratotherium

              TapirusFelis

              Canis

              Manis

              Africa

              South America

              Eurasia

              North America

              Africa + EurasiaAfrica + North AmericaEurasia + North America

              1

              23

              4

              56

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              Figure 4 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on the oldest fossil foreach lineage RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times and MAC par-simony was used to infer ancestral areas with the step matrix in figure 2 Areas for the oldest fossil lineage are enumerated intable 2 and are colour-coded as follows Africa blue Eurasia green North America brown South America red Nodes with

              unambiguous ancestral area reconstructions are shown with a single coloured circle nodes with ambiguous reconstructions areshown with two or more circles and each coloured circle corresponds to a different reconstruction

              2486 M S Springer et al Mammalian historical biogeography

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              00

              000

              0

              09

              1

              00

              0

              00

              000

              1

              08

              2

              00

              0

              00

              000

              6

              09

              2

              00

              1

              00

              0

              Bosthorn

              Hip

              pop

              otam

              us

              25

              0100

              0100

              0100

              1100

              1100

              06

              0

              09

              2

              00

              0

              00

              003

              5

              09

              1

              00

              0

              00

              002

              9

              07

              1

              00

              0

              00

              002

              9

              06

              9

              00

              1

              00

              1E

              uarc

              hon

              toglire

              s26

              0100

              0100

              0100

              0100

              0100

              00

              0

              08

              6

              00

              0

              00

              000

              0

              09

              2

              00

              0

              00

              000

              0

              09

              1

              00

              0

              00

              000

              0

              10

              0

              00

              0

              00

              0E

              uarc

              hon

              ta27

              0100

              0100

              0100

              0100

              0100

              00

              0

              09

              9

              00

              0

              00

              000

              0

              09

              9

              00

              0

              00

              000

              0

              10

              0

              00

              0

              00

              000

              0

              10

              0

              00

              0

              00

              0P

              ara

              pri

              mat

              es28

              0100

              0100

              0100

              0100

              0100

              00

              0

              10

              0

              00

              0

              00

              000

              0

              10

              0

              00

              0

              00

              000

              0

              10

              0

              00

              0

              00

              000

              0

              10

              0

              00

              0

              00

              0P

              rim

              ate

              s29

              0100

              0100

              0100

              0100

              0100

              00

              0

              09

              4

              00

              0

              00

              000

              0

              09

              5

              00

              0

              00

              000

              1

              09

              9

              00

              0

              00

              000

              0

              09

              9

              00

              0

              00

              0

              Pro

              sim

              ii30

              0100

              0100

              0100

              1100

              1100

              04

              6

              09

              3

              00

              0

              00

              002

              8

              09

              0

              00

              0

              00

              003

              0

              07

              0

              00

              0

              00

              003

              0

              06

              8

              00

              1

              00

              1G

              lire

              s31

              0100

              0100

              0100

              0100

              0100

              00

              0

              07

              4

              00

              0

              00

              000

              0

              08

              9

              00

              0

              00

              000

              0

              08

              1

              00

              0

              00

              000

              0

              09

              9

              00

              1

              00

              0L

              agom

              orp

              ha

              32

              0100

              0100

              0100

              0100

              0100

              00

              0

              10

              0

              00

              0

              00

              000

              0

              09

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              00

              0

              00

              000

              0

              09

              8

              00

              0

              00

              000

              1

              09

              8

              00

              1

              00

              0R

              od

              enti

              a33

              0(0

              1)0

              00100

              0100

              0100

              0100

              04

              1

              08

              0

              02

              5

              00

              003

              0

              09

              0

              00

              9

              00

              000

              0

              00

              0

              00

              3

              00

              000

              5

              02

              3

              07

              1

              00

              21100

              1100

              1110

              squ

              irre

              l-re

              late

              dcl

              ad

              e34

              0(0

              1)0

              00100

              0100

              0110

              0110

              00

              0

              08

              4

              05

              5

              00

              000

              0

              08

              7

              03

              0

              00

              000

              0

              00

              3

              03

              5

              00

              000

              2

              01

              5

              08

              1

              00

              1m

              ou

              se-r

              elat

              edcl

              ad

              ethorn

              35

              0000

              0100

              1000

              1000

              1000

              07

              6

              07

              6

              03

              2

              00

              005

              9

              06

              9

              00

              0

              00

              000

              0

              00

              0

              00

              1

              00

              001

              9

              00

              4

              07

              1

              00

              6H

              ystr

              icogn

              ath

              i1000

              0100

              1100

              1100

              1100

              1110

              0101

              0101

              1101

              0111

              1111

              Hys

              tric

              ogn

              ath

              i36

              0000

              1000

              1000

              1001

              1001

              08

              5

              00

              0

              00

              0

              08

              506

              5

              01

              0

              00

              0

              07

              500

              8

              00

              0

              00

              0

              02

              602

              8

              00

              2

              00

              3

              06

              70100

              0100

              0001

              0001

              Cav

              iom

              orp

              ha

              37

              0001

              0001

              0001

              0001

              0001

              00

              0

              00

              0

              00

              0

              09

              700

              0

              00

              0

              00

              0

              09

              300

              0

              00

              0

              00

              0

              10

              000

              0

              00

              0

              00

              0

              10

              0C

              avio

              idea

              38

              0001

              0001

              0001

              0001

              0001

              00

              0

              00

              0

              00

              0

              10

              000

              0

              00

              0

              00

              0

              09

              900

              0

              00

              0

              00

              0

              10

              000

              0

              00

              0

              00

              0

              10

              0

              mou

              se-r

              elat

              edcl

              ad

              e39

              0000

              1000

              1000

              1100

              1100

              07

              8

              07

              8

              05

              8

              00

              005

              9

              06

              9

              00

              8

              00

              000

              3

              00

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              00

              6

              00

              003

              1

              00

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              06

              4

              00

              20100

              0100

              1010

              1010

              1100

              1110

              Cast

              ori

              morp

              hathorn

              41

              0000

              1000

              1000

              0110

              0110

              00

              0

              07

              3

              07

              3

              00

              000

              0

              07

              1

              04

              4

              00

              000

              0

              00

              1

              06

              9

              00

              000

              2

              00

              6

              09

              2

              00

              0M

              uri

              dae

              0100

              0100

              0010

              0010

              Cast

              ori

              morp

              ha

              40

              0010

              0010

              0010

              0010

              0010

              00

              0

              00

              0

              08

              8

              00

              000

              0

              03

              1

              08

              9

              00

              000

              0

              00

              0

              09

              9

              00

              000

              0

              00

              1

              09

              9

              00

              0M

              uri

              dae

              42

              0100

              0100

              0100

              0100

              0100

              00

              0

              09

              7

              00

              0

              00

              000

              0

              09

              4

              00

              0

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              1

              00

              0

              2490 M S Springer et al Mammalian historical biogeography

              Phil Trans R Soc B (2011)

              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

              Table 5 Comparison of different methods for reconstructing ancestral areas NA1 not applicable for monomorphic

              reconstruction methods NA2 not applicable when the maximum number of areas is set at two NA2 not applicable formethods that employ single multistate charactersa

              FP-MBC FP-SMCMACParsimony DIVA DIVA-2 DEC DEC-2 SM-MBC SM-SMC

              nodes with ambiguous 75 129 128 1211 107 2323 2623 1617 614reconstructionsb 1920 1718 1012 410

              nodes with 2 areasc 33 NA1 46 1618 1516 1820 2019 77 NA11720 1717 46

              nodes with 3 areasd 00 NA1 00 65 NA2 66 NA2 00 NA145 00

              empty nodese 95 NA3 NA3 NA3 NA3 NA3 NA3 34 NA344

              aNumbers before slashes are based on analyses with area coding for extant taxa and numbers after slashes are based on analyses with areacoding for the oldest fossil See table 3 for abbreviationsbFor FP-MBC nodes were considered ambiguous if at least one area was reconstructed as (01) For SM-MBC and SM-SMC nodes wereconsidered ambiguous if the posterior probability (PP) of at least one area was 01 PP 09 (top line) or 02 PP 08 (bottom line)For DEC and DEC-2 nodes were considered ambiguous if the frequency ( f ) of at least one area was 01 f 09 (top line) or 02 p 08 (bottom line)cAt least two areas in at least one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) was takento include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line) or020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02 (bottomline)dAt least three areas in more than one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) wastaken to include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line)or 020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02(bottom line)eFor FP-MBC nodes were considered empty if all areas were reconstructed as 0 For SM-MBC nodes were considered empty if posteriorprobabilities were 010 (top line) or 020 (bottom line) for all four areas

              Mammalian historical biogeography M S Springer et al 2491

              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

              Eurasia throughout the Cretaceous but were absentfrom North America through much of the Late Cre-taceous and only attained appreciable diversity thereduring the last approximately 10 Myr of the period[133134] Boyer et al [135] concluded that theIndian subcontinent Eurasia and Africa are morelikely places of origin for Euarchonta than is NorthAmerica This agrees with our ancestral areareconstructions (figures 3 4 and tables 3 4)

              Although there is robust support for the monophylyof Xenarthra Afrotheria and Boreoeutheria relation-ships among these three groups and the root of theplacental tree remain contentious [105460ndash63136]Murphy et al [62] and Springer et al [10] suggested acausal relationship between the sundering of Africa andSouth America and basal cladogenesis among crown-group placental mammals given the coincidence ofmolecular dates for the base of placentals and thevicariant separation of Africa and South Americaapproximately 100ndash120 Ma

              Asher et al [125] analysed a combined matrix andrecovered Afrotheria in a nested position within Pla-centalia which contradicts the hypothesis that theplate tectonic separation of Africa and South Americaplayed a causal role in the early cladogenesis of placen-tal mammals However the nested position forAfrotheria resulted from the paraphyly of Euarchonto-glires Glires and Rodentia Rare genomic changesconfirm the monophyly of Xenarthra [137] Afrotheria[138ndash142] Euarchontoglires [139141142] Laura-siatheria [139141142] and Boreoeutheria[139141142] and preclude a nested position forAfrotheria in the placental tree

              Rare genomic changes have also been used toexamine the position of the placental root Kriegs

              Phil Trans R Soc B (2011)

              et al [139] reported LINE insertions that are sharedby Epitheria whereas Murphy et al [16] discoveredrare genomic changes that support AtlantogenataNishihara et al [142] performed genome-wide retro-poson analyses and found 22 25 and 21 LINEinsertions for Exafroplacentalia Epitheria and Atlan-togenata respectively Based on these resultsNishihara et al [142] concluded that XenarthraAfrotheria and Boreoeutheria diverged from oneanother nearly simultaneously They also suggested anew palaeogeographical model for the breakup of Pan-gaea and Gondwana in which Africa becomes isolatedfrom both South America and Laurasia at approxi-mately 120 Ma and argued that these coeval platetectonic events provide an explanation for the simul-taneous divergence of Afrotheria Xenarthra andBoreoeutheria However relaxed clock dates for thebase of Placentalia are closer to 100 Ma than to120 Ma (figures 3 and 4) A second difficulty concernsthe opening of the South Atlantic Nishihara et al[142] suggested that the Brazilian Bridge which rep-resented the last connection between Africa andSouth America was severed at approximately120 Mya but other recent reconstructions suggestthat the connection between the South Atlantic andCentral Atlantic was not established until lateAptianmid-Albian times (approx 110ndash100 Ma)[143144]

              8 THE IMPORTANCE OF DISPERSALIn the context of pre-plate tectonic views of theEarth Simpson [2] proposed three types ofmigration routes to describe the movement of ani-mals corridors filter bridges and sweepstakes

              Africa

              Mad

              agas

              car

              Tanzania

              Mozambique

              N

              100 mi

              Figure 5 Present day surface ocean currents in the Mozam-bique Channel (solid arrows) are southndashsouthwest andwould not have facilitated west to east transoceanic dispersalfrom Africa to Madagascar [153] By contrast westerly sur-face ocean currents in the Eocene (dashed arrows) would

              have facilitated dispersal across the Mozambique Channelfrom Africa to Madagascar especially during tropicalstorms [154] The outline of Madagascar with dashed linesshows its approximate position relative to Africa during theEocene

              2492 M S Springer et al Mammalian historical biogeography

              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

              dispersal Corridors connect two areas and are per-meable to all animals filter bridges impose selectivebarriers that affect some but not all animals andsweepstakes dispersal is required when there arestrong barriers to migration such as high mountainbarriers or oceans

              Simpson [2] suggested that Madagascarrsquos livingmammals were the product of sweepstakes dispersalfrom Africa to Madagascar Sweepstakes dispersalhypotheses fell out of favour with the validation ofplate tectonic theory and were summarily dismissedas lsquomiraculousrsquo hypotheses with no scientific basis[145] However it has become apparent that some dis-tributional patterns can only be explained bysweepstakes dispersal [146] Observational data alsoprovide support for long-distance vertebrate dispersal[147] Examples of low probability sweepstakes disper-sal involving mammals include the origins of theendemic mammal fauna in Madagascar and theoccurrence of caviomorph rodents and platyrrhine pri-mates in South America

              Madagascarrsquos strictly terrestrial extant mammal faunaincludes endemic lineages from four placental orderstenrecs (Afrosoricida) euplerids (Carnivora) neso-myines (Rodentia) and lemurs (Primates) In eachlineage Madagascar endemics comprise monophyleticassemblages with closest living relatives in Africa[148149] Madagascar separated from Africa approxi-mately 165 Ma but maintained its connection withAntarctica via the Kerguelen Plateau until as late as80 Ma at which time it became permanentlyseparated from other Gondwanan landmasses This his-tory suggests that Madagascarrsquos terrestrial endemicmammals are either the ancient descendants of vicariantevents that occurred prior to 80 Ma or reached Mada-gascar via transoceanic sweepstakes dispersal at a latertime Another possibility is that a land bridge connectedAfrica and Madagascar between 45 and 26 Ma [150]

              Molecular divergence dates suggest that all fourendemic lineages last shared a common ancestorwith their African sister group in the Cenozoic[148149151152] Poux et al [148] concluded thatdispersal by lemurs rodents and carnivorans musthave occurred by transoceanic dispersal rather thanland bridge dispersal based on molecular dates forthe colonization of Madagascar that were outside ofthe land bridge window ie 60ndash50 Ma for lemurs26ndash19 Ma for carnivorans and 24ndash20 Ma for rodentsHowever present ocean currents allow for dispersalfrom Madagascar to Africa but oppose reciprocal dis-persal from Africa to Madagascar across theMozambique Channel If ocean currents were thesame for most of the Cenozoic as they are todaythey would not have facilitated west to east transocea-nic dispersal across the Mozambique Channel becauseof the strong southndashsouthwest flow of the Mozambi-que Current [153]

              Ali amp Huber [154] addressed this problem by simu-lating surface ocean currents in the Indian Oceanduring the Eocene They concluded that large-scaleocean current systems in the Eocene were profoundlydifferent from modern observed circulatory patternsand that the flow along the African coast was eastwardtowards Madagascar instead of southward through the

              Phil Trans R Soc B (2011)

              Mozambique Channel (figure 5) Ali amp Huber [154]further suggested that dispersal probabilities wereenhanced by tropical storms that (i) generated largefloating tree islands that would have allowed for asuccessful oceanic voyage and (ii) acceleratedtransportation rates from Africa to Madagascar thatwould have allowed for complete crossing of theMozambique Channel in 25ndash30 days

              The dispersal of four groups of fully terrestrialmammals from Africa to Madagascar at a time whenthere was no land bridge is a testament to the impor-tance of rare sweepstakes events in the evolutionaryhistory of Placentalia Even more remarkable is theoccurrence of two different groups of placental mam-mals hystricognath rodents and anthropoid primatesin Africa and South America

              Hystricognathi includes Hystricidae (Old World por-cupines) and Phiomorpha (eg cane rats dassie rats)from the Old World and Caviomorpha (eg porcupineschinchillas) from the New World The oldest hystricog-naths are from the late Eocene Egypt and have beendated at approximately 37 Ma [81] Old World hystri-cognaths are paraphyletic usually with phiomorphshaving closer phylogenetic affinities to South Americancaviomorphs than to hystricids [14155156] Relaxedclock dates suggest that South American caviomorphslast shared a common ancestor with phiomorphsbetween 45 and 36 Ma [81155157] The most recentcommon ancestor of Caviomorpha has been dated at45ndash31 Ma [81155157158]

              PacificOcean

              NorthAtlanticOcean

              SouthAtlantic Ocean

              IndianOcean

              NorthAmerica

              SouthAmerica

              Africa

              Antarctica

              Australia

              Asia

              Europe

              PacificOcean1b

              1b

              1a3

              2

              Middle Eocene

              Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

              South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

              Mammalian historical biogeography M S Springer et al 2493

              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

              Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

              The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

              Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

              Phil Trans R Soc B (2011)

              phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

              9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

              The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

              Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

              or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

              node number (figure 7) Eick et al [12] re-analysis

              1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

              ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

              3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

              4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

              9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

              10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

              11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

              12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

              ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

              13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

              ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

              BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

              14 A A B C AC BC ABC15 A A B C AC BC

              16 A A B C17 A A B AC BC ABC

              2494 M S Springer et al Mammalian historical biogeography

              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

              and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

              We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

              Phil Trans R Soc B (2011)

              Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

              FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

              1

              2

              3

              4

              56

              7

              8

              9

              10

              11

              1213

              14

              1516

              17

              EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

              Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

              Mammalian historical biogeography M S Springer et al 2495

              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

              with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

              10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

              In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

              Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

              Phil Trans R Soc B (2011)

              sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

              In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

              11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

              In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

              With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

              12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

              2496 M S Springer et al Mammalian historical biogeography

              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

              together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

              MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

              REFERENCES1 Jones K E amp Safi K 2011 Ecology and evolution of

              mammalian biodiversity Phil Trans R Soc B 366

              2451ndash2461 (doi101098rstb20110090)2 Simpson G G 1940 Mammals and land bridges

              J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

              Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

              4 Springer M S Meredith R W Eizirik E Teeling

              E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

              5 Bollback J P 2006 SIMMAP stochastic charactermapping of discrete traits on phylogenies BMC Bioin-form 7 88 (doi1011861471-2105-7-88)

              6 Drummond A J Ho S Y W Phillips M J amp Ram-baut A 2006 Relaxed phylogenetics and dating withconfidence PLoS Biol 4 e88 (doi101371journalpbio0040088)

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              8 Douady C J amp Douzery E J P 2003 Molecular esti-mation of eulipotyphlan divergence times and theevolution of lsquoInsectivorarsquo Mol Phylogenet Evol 28285ndash296 (doi101016S1055-7903(03)00119-2)

              9 Douady C J Catzeflis F Raman J Springer M S

              amp Stanhope M J 2003 Molecular evidence for theSahara as a vicariant agent and the role of Miocene cli-matic events in the diversification of the mammalianorder Macroscelidea (elephant shrews) Proc NatlAcad Sci USA 100 8325ndash8330 (doi101073pnas

              0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

              S J 2003 Placental mammal diversification and theCretaceousndashTertiary boundary Proc Natl Acad SciUSA 100 1056ndash1061 (doi101073pnas0334222

              100)11 Delsuc F Vizcaıno S F amp Douzery E J P 2004

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              relaxed molecular clock study within xenarthransBMC Evol Biol 4 11 (doi1011861471-2148-4-11)

              Phil Trans R Soc B (2011)

              12 Eick G N Jacobs D S amp Matthee C A 2005 Anuclear DNA phylogenetic perspective on the evolutionof echolocation and historical biogeography of extant

              bats (Chiroptera) Mol Biol Evol 22 1869ndash1886(doi101093molbevmsi180)

              13 Teeling E C Springer M S Madsen O Bates POrsquoBrien S J amp Murphy W J 2005 A molecular phy-logeny for bats illuminates biogeography and the fossil

              record Science 307 580ndash584 (doi101126science1105113)

              14 Huchon D Chevret P Jordan U Kilpatrick C WRanwez V Jenkins P D Brosius J amp Schmitz J

              2007 Multiple molecular evidences for a living mamma-lian fossil Proc Natl Acad Sci USA 104 7495ndash7499(doi101073pnas0701289104)

              15 Janecka J E Miller W Pringle T H Wiens FZitzmann A Helgen K M Springer M S amp

              Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

              16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

              the root of the placental mammal tree Genome Res 17413ndash421 (doi101101gr5918807)

              17 Beck R M 2008 A dated phylogeny of marsupialsusing a molecular supermatrix and multiple fossil con-straints J Mammal 89 175ndash189 (doi10164406-

              MAMM-A-4371)18 Meredith R W Westerman M amp Springer M S

              2008 A timescale and phylogeny for lsquobandicootsrsquo (Pera-melemorphia Marsupialia) based on sequences for five

              nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

              19 Meredith R W Westerman M amp Springer M S2008 Phylogeny and timescale for the living genera ofkangaroos and kin (Macropodiformes Marsupialia)

              based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

              20 Meredith R W Westerman M amp Springer M S 2009A phylogeny of Diprotodontia (Marsupialia) based onsequences for five nuclear genes Mol Phylogenet Evol51 554ndash571 (doi101016jympev200902009)

              21 Meredith R W Krajewski C Westerman W ampSpringer M S 2009 Relationships and divergencetimes among the orders and families of marsupialsMus N Ariz Bull 65 383ndash406

              22 Chatterjee H J Ho S W Y Barnes I amp Groves C2009 Estimating the phylogeny and divergence times ofprimates using a supermatrix approach BMC EvolBiol 9 259 (doi1011861471-2148-9-259)

              23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

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              estimating divergence times in the absence of rate con-stancy Mol Biol Evol 14 1218ndash1231

              25 Sanderson M J 2002 Estimating absolute rates of mol-

              ecular evolution and divergence times a penalizedlikelihood approach Mol Biol Evol 19 101ndash109

              26 Thorne J L amp Kishino H 2002 Divergence time andevolutionary rate estimation with multilocus data SystBiol 51 689ndash702 (doi10108010635150290102456)

              27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

              Mammalian historical biogeography M S Springer et al 2497

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              28 Battistuzzi F U Filipski A Hedges S B amp KumarS 2010 Performance of relaxed-clock methods in esti-mating evolutionary divergence times and their

              credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

              29 Brown R P amp Yang Z 2010 Bayesian dating of shal-low phylogenies with a relaxed molecular clock SystBiol 59 119ndash131 (doi101093sysbiosyp082)

              30 Inoue J Donoghue P C J amp Yang Z 2010 Theimpact of the representation of fossil calibrations onBayesian estimation of species divergence times SystBiol 59 74ndash89 (doi101093sysbiosyp078)

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              32 Simpson G G 1965 The geography of evolution collectedessays PhiladelphiaNew York PANY Chilton Books

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              34 Wen J Xiang Q-Y Qian H Li J Want X-W amp

              Ickert-Bond S M Intercontinental and intracontinen-tal biogeographymdashpatterns and methods J Syst Evol4 327ndash329

              35 Nylander J A A Olsson U Alstrom P amp Sanmar-tın I 2008 Accounting for phylogenetic uncertainty

              in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

              36 Ree R H Moore B R Webb C O amp Donoghue

              M J 2005 A likelihood framework for inferring theevolution of geographic range on phylogenetic treesEvolution 59 2299ndash2311

              37 Ree R H amp Smith S A 2008 Maximum likelihoodinference of geographic range evolution by dispersal

              local extinction and cladogenesis Syst Biol 57 4ndash14 (doi10108010635150701883881)

              38 Hardy C R amp Linder H P 2005 Intraspecific varia-bility and timing in ancestral ecology reconstruction atest case from the Cape flora Syst Biol 54 299ndash316

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              version 3 analysis of phylogeny and character evolutionSunderland MA Sinauer Associates

              40 Clark J R Ree R H Alfaro M E King M G

              Wagner W L amp Roalson E H 2008 A comparativestudy in ancestral range reconstruction methodsretracing the uncertain histories of insular lineagesSyst Biol 57 693ndash707 (doi101080106351508

              02426473)41 Patterson C 1982 Morphological characters and hom-

              ology In Problems of phylogenetic reconstruction (eds K AJoysey amp A E Friday) pp 21ndash74 London UK Aca-demic Press

              42 Ree R H amp Sanmartın I 2009 Prospects and chal-lenges for parametric models in historicalbiogeographical inference J Biogeogr 36 1211ndash1220(doi101111j1365-2699200802068x)

              43 Lamm K S amp Redelings B D 2009 Reconstructing

              ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

              44 Maddison W P amp Maddison D R 2009 Mesquite amodular system for evolutionary analysis version 272See httpmesquiteprojectorg

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              Phil Trans R Soc B (2011)

              46 Lim B K 2008 Historical biogeography of New Worldemballonurid bats (Tribe Diclidurini) taxon pulsediversification J Biogeogr 35 1385ndash1401 (doi10

              1111j1365-2699200801888x)47 Lim B K 2009 Review of the origins and biogeogra-

              phy of bats in South America Chiroptera Neotropical15 391ndash410

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              grative historical biogeography J Int Comp Biol 43261ndash270 (doi101093icb432261)

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              Cretaceous terrestrial vertebrates from Madagascarimplications for Latin American biogeography AnnMo Bot Gard 93 178ndash208 (doi1034170026-6493(2006)93[178LCTVFM]20CO2)

              50 Sereno P C Wilson J A amp Conrad J L 2004 New

              dinosaurs link southern landmasses in the Mid-Cretac-eous Proc R Soc Lond B 271 1325ndash1330 (doi101098rspb20042692)

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              356121a0)52 Novacek M J 1993 Reflections on higher mammalian

              phylogenetics J Mamm Evol 1 1064ndash755453 Springer M S Cleven G C Madsen O de Jong

              W W Waddell V G Amrine H M amp Stanhope

              M J 1997 Endemic African mammals shake the phylo-genetic tree Nature 388 61ndash64 (doi10103840386)

              54 Springer M S Murphy W J Eizirik E amp OrsquoBrienS J 2005 Molecular evidence for major placental

              clades In The rise of placental mammals origins andrelationships of the major extant clades (eds K D Roseamp J D Archibald) pp 37ndash49 Baltimore MD JohnsHopkins University Press

              55 Stanhope M J Madsen O Waddell V G Cleven

              G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

              56 Stanhope M J Waddell V G Madsen O de Jong

              W W Hedges S B Cleven G C Kao D ampSpringer M S 1998 Molecular evidence for multipleorigins of Insectivora and for a new order of endemicAfrican insectivore mammals Proc Natl Acad SciUSA 95 9967ndash9972 (doi101073pnas95179967)

              57 Waddell P Okada N amp Hasegawa M 1999 Towardsresolving the interordinal relationships of placentalmammals Syst Biol 48 1ndash5 (doi101093sysbio4811)

              58 Waddell P J Kishino H amp Ota R 2001 A phyloge-netic foundation for comparative mammaliangenomics Genome Inform 12 141ndash154

              59 Eizirik E Murphy W J amp OrsquoBrien S J 2001 Mol-ecular dating and biogeography of the early placental

              mammal radiation J Hered 92 212ndash219 (doi101093jhered922212)

              60 Madsen O et al 2001 Parallel adaptive radiations intwo major clades of placental mammals Nature 409610ndash614 (doi10103835054544)

              61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

              62 Murphy W J et al 2001 Resolution of the early placen-

              tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

              63 Scally M Madsen O Douady C J de Jong W WStanhope M J amp Springer M S 2001 Molecular

              2498 M S Springer et al Mammalian historical biogeography

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              evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

              64 Springer M S amp de Jong W W 2001 Which mamma-lian supertree to bark up Science 291 1709ndash1711

              65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

              (doi101093bioinformaticsbtl446)66 Benton M J amp Donoghue P C J 2007 Paleontologi-

              cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

              67 Reisz R R amp Muller J 2004 Molecular timescales andthe fossil record a paleontological perspective TrendsGenet 20 237ndash241 (doi101016jtig200403007)

              68 Muller J amp Reisz R R 2005 Four well-constrainedcalibration points from the vertebrate fossil record for

              molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

              69 Gradstein F M amp Ogg J G 2009 The geologic timescale In The timetree of life (eds S B Hedges amp SKumar) pp 26ndash34 Oxford UK Oxford University Press

              70 Gheerbrant E 2009 Paleocene emergence of elephantrelatives and the rapid radiation of African ungulatesProc Natl Acad Sci USA 106 10717ndash10721(doi101073pnas0900251106)

              71 Bergqvist L P Abrantes E A L amp Avilla L D S

              2004 The Xenarthra (Mammalia) of Sao Jose de Ita-boraı Basin (upper Paleocene Itaboraian) Rio deJaneiro Brazil Geodiversitas 26 323ndash337

              72 Carlini A A Pascual R Reguero M A Scillato-

              Yane G J Tonni E P amp Vizcaıno S F 1990 Thefirst Paleogene land placental mammal from Antarcticaits paleoclimatic and paleobiogeographical bearings InAbstracts IV International Congress of Systematic and Evol-utionary Biology (eds B Cox amp J Reveal) 325 p

              Baltimore MD University of Maryland73 Vizcaıno S F amp Scillato-Yane G J 1995 An Eocene

              Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

              74 Benton M J Donoghue P C J amp Asher R J 2009

              Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

              75 Flynn J J 1996 Carnivoran phylogeny and rates ofevolution morphological taxonomic and molecular

              In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

              76 Hunt Jr R M amp Tedford R H 1993 Phylogenetic

              relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

              77 Wesley-Hunt G D amp Flynn J J 2005 Phylogeny ofthe Carnivora basal relationships among the carnivora-morphans and assessment of the position oflsquoMiacoidearsquo relative to Carnivora J Syst Palaeontol 31ndash28 (doi101017S1477201904001518)

              78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

              79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

              Phil Trans R Soc B (2011)

              80 Storch G amp Seiffert C 2007 Extraordinarily preservedspecimen of the oldest known glirid from the middleEocene of Messel (Rodentia) J Vertebr Paleontol 27

              189ndash194 (doi1016710272-4634(2007)27[189EPSOTO]20CO2)

              81 Sallam H M Seiffert E R Steiper M E amp SimonsE L 2009 Fossil and molecular evidence constrainscenarios for the early evolutionary and biogeographic

              history of hystricognathous rodents Proc Natl AcadSci USA 106 16 722ndash16 727 (doi101073pnas0908702106)

              82 Hartenberger L 1998 Description of the radiation of

              the Rodentia (Mammalia) from the Late Paleocene tothe Miocene phylogenetic consequences C R AcadSci II A 326 439ndash444

              83 Vucetich M G Verzi D H amp Hartenberger L 1999Review and analysis of the radiation of the South

              American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

              84 Flynn L J amp Jacobs L L 2008 Castoridea In Evolution oftertiary mammals of North America small mammals xenar-thrans and marine mammals (eds C M Janis G F

              Gunnell amp M D Uhen) vol 2 pp 391ndash405 CambridgeUK Cambridge University Press

              85 Marenssi S A Reguero M A Santillana S N ampVizcaıno S F 1994 Eocene land mammals from Sey-mour Island Antarctica paleobiogeographical

              implications Antarctic Sci 6 3ndash15 (doi101017S0954102094000027)

              86 MacPhee R D E amp Reguero M A 2010 Reinterpre-tation of a middle Eocene record of Tardigrada (Pilosa

              Xenarthra Mammalia) from La Meseta FormationSeymour Island West Antarctica Am Mus Novit3689 1ndash21 (doi1012067031)

              87 McKenna M C amp Bell S K 1997 Classification ofmammals above the species level New York NY Colum-

              bia University Press88 Gaudin T J amp Branham D G 1998 The phylogeny of

              the Myrmecophagidae (Mammalia Xenarthra Vermi-lingua) and relationship of Eurotamandua to theVermilingua J Mamm Evol 5 237ndash265 (doi10

              1023A1020512529767)89 Galliari F C Carlini A A amp Sanchez-Villagra M R

              2010 Evolution of the axial skeleton in armadillos(Mammalia Dasypodidae) Mamm Biol 75 326ndash333 (doi101016jmambio200903014)

              90 Poljak S Confalonieri V Fasanella M Gabrielli Mamp Lizarralde M S 2010 Phylogeography of the arma-dillo Chaetophractus villosus (Dasypodidae Xenarthra)post-glacial range expansion from Pampas to Patagonia

              (Argentina) Mol Phylogenet Evol 55 38ndash46 (doi101016jympev200912021)

              91 Sige B Crochet J-Y amp Insole A 1977 Les plusvielles taupes Geobios Mem Spec 1 141ndash157(doi101016S0016-6995(77)80014-4)

              92 Gunnell G F Bown T M Hutchinson J H ampBloch J I 2008 Lipotyphla In Evolution of Tertiarymammals of North America small mammals xenarthransand marine mammals vol 2 (eds C M Janis G FGunnell amp M D Uhen) pp 89ndash125 Cambridge

              UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

              amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

              94 Tabuce R Asher R J amp Lehmann T 2008 Afrother-ian mammals a review of current data Mammalia 722ndash14 (doi101515MAMM2008004)

              Mammalian historical biogeography M S Springer et al 2499

              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

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              96 Milledge S 2003 Fossil aardvarks from the Lothagam

              beds In Lothagam the dawn of humanity in EasternAfrica (eds J Leakey amp J Harris) pp 363ndash368New York NY Columbia University Press

              97 Flynn L J amp Jacobs L L 2008 Aplodontia In Evol-ution of tertiary mammals of North America smallmammals xenarthrans and marine mammals vol 2(eds C M Janis G F Gunnell amp M D Uhen) pp377ndash390 Cambridge UK Cambridge UniversityPress

              98 Marivaux L Ducrocq S Jaeger J-J Marandat BSudre J Chaimanee Y Tun S T Htoon W ampSoe A N 2005 New remains of Pondaungimysanomaluropsis (Rodentia Anomaluroidea) from thelatest middle Eocene Pondaung Formation of

              Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

              99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

              100 Antoine P-O et al 2007 The middle Miocene (Laven-

              tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

              Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

              Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

              (doi1016710272-4634(2007)27[683OADOTO]20CO2)

              102 Frailey C D amp Campbell K E 2004 The rodents ofthe Santa Rosa Local Fauna In The Paleogene mamma-lian fauna of Santa Rosa Amazonian Peru (ed K E

              Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

              103 Martin T 2004 Evolution of incisor enamel micro-structure in Lagomorpha J Vertebr Paleontol 24

              411ndash426 (doi1016712513)104 Lopez-Martinez N 2008 The lagomorph fossil

              record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

              105 Marivaux L Bocat L Chaimanee Y Jaeger J-JMarandat B Srisuk P Tafforeau P Yamee C ampWelcomme L 2006 Cynocephalid dermopterans

              from the Palaeogene of South Asia (Thailand Myan-mar and Pakistan) systematic evolutionary andpalaeobiogeographic implications Zool Scripta 35395ndash420 (doi101111j1463-6409200600235x)

              106 Tong Y 1988 Fossil tree shrews from the Eocene

              Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

              107 Godfrey L R amp Jungers W L 2002 Quaternary fossillemurs In The primate fossil record (ed W C Hartwig)pp 97ndash121 Cambridge UK Cambridge University

              Press108 Bajpai S Kay R F Williams B A Das D P

              Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

              Phil Trans R Soc B (2011)

              109 Beard K C Qi T Dawson M R Wang B amp Li C1994 A diverse new primate fauna from middle Eocenefissure-fillings in southeastern China Nature 368

              604ndash609 (doi101038368604a0)110 Orliac M Boisserie J-R MacLatchy L amp Lihoreau

              F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

              111 Honey J G Harrison J A Prothero D R ampStevens M S 1998 Camelidae In Evolution of Tertiarymammals of North America terrestrial carnivoresungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp439ndash462 Cambridge UK Cambridge University Press

              112 Metais G amp Vislobokova I 2008 Basal ruminants In

              The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

              113 Harris J M amp Li-Ping L 2008 Superfamily SuoideaIn The evolution of artiodactyls (eds D R Prothero amp S

              E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

              114 Bowen G J Clyde W C Koch P L Ting SAlroy J Tsubamoto T Wang Y amp Wang Y 2002Mammalian dispersal at the PaleoceneEocene bound-

              ary Science 295 2062ndash2065 (doi101126science1068700)

              115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

              earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

              116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

              117 Colbert M W amp Schoch R M 1998 Tapiroidea and

              other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

              118 Dashzeveg D 1996 Some carnivorous mammals fromthe Paleogene of the Eastern Gobi Desert Mongoliaand the application of Oligocene carnivores to strati-graphic correlation Am Mus Novit 3179 1ndash14

              119 Hunt Jr R M 1998 Evolution of the aeluroid Carni-vora diversity of the earliest aeluroids from Eurasia(Quercy Hsanda-Gol) and the origin of felids AmMus Novit 3252 1ndash65

              120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

              cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

              121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

              122 Huelsenbeck J P amp Ronquist F 2001 MrBAYESBayesian inference of phylogenetic trees Bioinformatics17 754ndash755 (doi101093bioinformatics178754)

              123 Ronquist F amp Huelsenbeck J P 2003 MrBayes 3Bayesian phylogenetic inference under mixed modelsBioinformatics 19 1572ndash1574 (doi101093bioinfor-maticsbtg180)

              2500 M S Springer et al Mammalian historical biogeography

              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

              124 Carroll R L 1988 Vertebrate paleontology and evolutionNew York NY W H Freeman and Company

              125 Asher R J Novacek M J amp Geisler J G 2003

              Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

              126 Zack S P Penkrot T A Bloch J I amp Rose K D

              2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

              127 Tabuce R Marivaux L Adaci M Bensalah M

              Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

              128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

              129 Simpson G G 1951 History of the fauna of Latin

              America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

              130 Simpson G G 1978 Early mammals in South Amer-ica fact controversy and mystery Proc Am PhilSoc 122 318ndash328

              131 Archibald J D 1996 Fossil evidence for a Late Cretac-eous origin of lsquohoofedrsquo mammals Science 272 1150ndash1153 (doi101126science27252651150)

              132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

              133 Cifelli R L amp Davis B M 2003 Marsupial origins

              Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

              2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

              135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

              eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

              136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

              pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

              W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

              260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

              N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

              139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

              Phil Trans R Soc B (2011)

              140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

              141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

              0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

              roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

              of mammals Proc Natl Acad Sci USA 106 5235ndash5240

              143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

              144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

              145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

              146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

              73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

              dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

              148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

              108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

              dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

              37091305110239)150 McCall R 1997 Implications of recent geological

              investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

              151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

              152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

              153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

              154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

              155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

              caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

              156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

              Mammalian historical biogeography M S Springer et al 2501

              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

              revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

              157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

              158 Rowe D L Dunn K A Adkins R M amp Honeycutt

              R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

              159 Beard K C Wang B Dawson M Huang X amp

              Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

              160 Beard K C amp Wang J 2004 The eosimiid primates

              (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

              161 Arnason U Gullberg A Schweizer B A amp Janke A

              2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

              162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

              163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

              164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

              513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

              ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

              AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

              diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

              167 Gunnell G F amp Simmons N B 2005 Fossil evidence

              and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

              168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

              Wyoming and the evolution of flight and echolocationNature 451 818ndash822

              169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

              paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

              170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

              171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

              ian evolution Science 302 1934ndash1939 (doi101126science1090718)

              172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

              Phil Trans R Soc B (2011)

              dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

              173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

              D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

              174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

              from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

              175 Cifelli R L 1993 Theria of metatherianndasheutherian

              grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

              176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

              177 Wible J R 1990 Late Cretaceous marsupial petrosal

              bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

              178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

              pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

              179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

              of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

              180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

              2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

              181 Beck R M Godthelp H Weisbecker V Archer M

              amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

              182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

              Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

              183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

              for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

              184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

              implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

              185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

              phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

              186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

              marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

              187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

              2502 M S Springer et al Mammalian historical biogeography

              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

              mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

              188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

              189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

              190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

              Phil Trans R Soc B (2011)

              Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

              191 Springer M S amp Krajewski C 2009 Monotremes

              (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

              192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

              53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

              In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

              194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

              • The historical biogeography of Mammalia
                • Introduction
                • Phylogeny reconstruction
                • Molecular dating analyses
                • Ancestral area reconstruction
                • Box 1
                • Ancestral area chronograms and palaeogeography
                • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                • Placental biogeography
                • The importance of dispersal
                • Bat biogeography
                • Marsupial biogeography
                • Monotreme biogeography
                • Conclusions
                • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
                • REFERENCES

                Table 1 Fossil constraints Minimum ages are based on the age of the oldest unequivocal fossils belonging to the clade

                Maximum ages are based on the maximum of stratigraphic bounding [66] phylogenetic bracketing [6768] and phylogeneticuncertainty Stratigraphic bounding encompassed two successive underlying fossil-bearing deposits that did not contain anyfossils from the lineage of interest phylogenetic bracketing encompassed the age of the oldest fossils that were up to twonodes below the divergence event and phylogenetic bracketing allowed for the possibility that taxa of uncertain phylogeneticaffinities belong to the crown clade first outgroup or second outgroup Dates used in stratigraphic bounding are from

                Gradstein et al [69] We recognized the following chronological units in succession from youngest to oldest PleistocenePliocene Late Miocene Middle Miocene Early Miocene Late Oligocene Early Oligocene Late Eocene Middle EoceneEarly Eocene Late Palaeocene Middle Palaeocene Early Palaeocene Maastrichtian and Campanian

                node numbera

                fossil constraints (Ma)

                oldest fossil for minimum reference(s)minimum maximum

                3 556 712 Eritherium [70]8 585 712 Riostegotherium [6671]

                10 338 655 Antarctic specimenb [7273]16 611 842 Adunator [74]19 371 658 Hesperocyon gregarious [75ndash77]21 555 611 Hyracotherium [78]

                32 484 611 leporid tarsals [79]34 484 611 Eogliravus [80]36 338 56 Gaudeamus [8182]38 118 34 Prodolichotis [83]41 524 611 Mattimys [84]

                aNode numbers refer to figures 3 and 4bThe Eocene Antarctic specimen is an ungual phalanx that Carlini et al [72] identified as a megatheroid sloth Marenssi et al [85] revisedthe identification of the phalanx to include either Tardigrada (sloths) or Vermilingua (anteaters) Subsequently Vizcaıno amp Scillato-Yane[73] described a fragmentary tooth from the Eocene of Antarctica and referred this tooth to Tardigrada but MacPhee amp Reguero [86]reinterpreted this tooth fragment as Mammalia incertae sedis based on histological evidence

                2484 M S Springer et al Mammalian historical biogeography

                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                Ambiguous ancestral area reconstructions were aproblem for all methods and the number of nodeswith equivocal reconstructions ranged from four(SM-SMC with extant coding) to 26 (DEC-2 withextant coding) For some methods the number ofambiguous nodes was higher with extant coding thanwith fossil coding (FP-MBC FP-SMC MAC parsi-mony DIVA DIVA-2 DEC DEC-2) but in othercases this pattern was reversed (SM-MBC SM-SMC) Ancestral areas for Placentalia Exafroplacenta-lia (frac14Boreoeutheria thorn Xenarthra) and several nodeswithin Rodentia were reconstructed as ambiguous bynearly all methods Other nodes were consistentlyreconstructed with unambiguous ancestral areasincluding clades with ancestral areas in Africa(Afrotheria and its internal nodes) Eurasia (Euarch-onta Paraprimates [frac14Dermoptera thorn Scandentia]Muridae) North America (Erinaceidae thorn Soricidae)and South America (Xenarthra and its internalnodes Cavioidea) Most analyses reconstructedEurasia as the ancestral area for BoreoeutheriaLaurasiatheria and Euarchontoglires This finding isdiscussed below

                The importance of fossils is illustrated by recon-structions for Lagomorpha (tables 3 and 4) Allmethods returned North America as the ancestralarea when extant taxa were used for area coding butidentified Eurasia with fossil coding

                DIVA and DEC analyses reconstructed more nodeswith multiple areas than did the other methodsAnalyses with DEC reconstructed 17ndash20 nodes withtwo or more areas and four to six nodes with threeor more areas DIVA analyses resulted in 15ndash18

                Phil Trans R Soc B (2011)

                nodes with at least two areas and five to six nodeswith three or more areas None of the other methodsreconstructed ancestral nodes to include three ormore areas in a single reconstruction although threeor four areas were sometimes represented by thefull complement of alternate reconstructions for agiven node

                FP-MBC returned nine empty nodes with extantcoding and five empty areas with fossil coding SM-MBC with extant coding resulted in three or fourempty nodes with extant coding and four emptynodes with extinct coding (table 5)

                7 PLACENTAL BIOGEOGRAPHYAfrotheria (Afrosoricida Hyracoidea MacroscelideaProboscidea Sirenia Tubulidentata) was the first ofthe new superordinal groups to receive robust molecu-lar support [535556] With the exception of Sireniaall afrotherian orders have first fossil occurrences inAfrica and two orders (Macroscelidea Afrosoricida)have evolutionary histories that are restricted to theAfro-Malagasy region Springer et al [53] suggestedthat interordinal separation of afrotherian orders com-menced during a window of isolation that began in theCretaceous after Africa separated from South Amer-ica and lasted until the early Cenozoic when Africadocked with Europe Consistent with this scenarioAfrica was unambiguously reconstructed as the ances-tral area for Afrotheria (figures 3 and 4) Thishypothesis contrasts with traditional views whereinthe African mammal fauna arrived from the northincluding a condylarth stock that arrived in Africa

                Table 2 Geographical area of extant taxa and oldest fossils used in ancestral area reconstruction

                taxona area of extant species area of oldest fossilb

                Choloepus didactylus SA SA Megalonychidae Miocene [87]Tamandua tetradactyla SA SA Tamandua Pleistocene [87]

                Myrmecophaga tridactyla SA SA Neotamandua Miocene [8788]Euphractus sexcinctus SA SA Zaedyus Pliocene [8789]Chaetophractus villosus SA SA Chaetophractus Pliocene [90]Erinaceus europaeus Eurasia NA Adunator Palaeocene [74]Talpa altaica Eurasia Eurasia Eotalpa Eocene [91]

                Sorex araneus Eurasia NA Domnina Eocene [92]Echinops telfairi Africa Africa Widanelfarasia Eocene [93]Amblysomus hottentotus Africa Africa Eochrysochloris Oligocene [93]Procavia capensis Africa Africa Seggeurius Eocene [94]

                Loxodonta africana Africa Africa Eritherium Palaeocene [70]Macroscelides proboscideus Africa Africa Macroscelides Pliocene [95]Elephantulus rufescens Africa Africa Elephantulus Pliocene [95]Orycteropus afer Africa Africa Orycteropus Miocene [96]Tamias striatus NA NA Spurimus Eocene [97]

                Muscardinus avellanarius Eurasia Eurasia Eogliravus Eocene [80]Mus musculus Eurasia Eurasia Progonomys Miocene [74]Rattus norvegicus Eurasia Eurasia Karnimata Miocene [74]Pedetes capensis Africa Africa Pondaungimys Eocene [98]Hystrix brachyurus Eurasia Africa Gaudeamus Eocene [81]

                Castor canadensis NA NA Mattimys Eocene [84]Dipodomys merriami NA NA Proheteromys Oligocene [99]Cavia porcellus SA SA Prodolichotis Miocene [83100]Hydrochaeris hydrochaeris SA SA Cardiatherium Miocene [101]Erethizon dorsatum NA SA Eopululo Eocene [102]

                Sylvilagus floridanus NA SA Eurasia tarsal elements Eocene [79]Ochotona princeps NA Eurasia Sinolagomys Oligocene [103104]Cynocephalus variegatus Eurasia Eurasia Dermotherium Eocene [105]Tupaia minor Eurasia Eurasia Eodendrogale Eocene [106]Lemur catta Africa Africa Pachylemur Quaternary [107]

                Homo sapiens Eurasia NA SA Africa Eurasia Anthrasimias Palaeocene [108]Tarsius syrichta Eurasia Eurasia Tarsius Eocene [109]Hippopotamus amphibius Africa Africa Morotochoerus Miocene [110]Lama glama SA NA Poebrodon Eocene [111]

                Tragelaphus eurycerus Africa Eurasia Archaeomeryx Eocene [112]Sus scrofa Eurasia Africa Eurasia Eocenchoerus Eocene [113]Equus caballus Eurasia Eurasia NA Hyracotherium Eocene [78114115]Ceratotherium simum Africa NA Hyracodontidae Eocene [116]Tapirus indicus Eurasia NA Helaletes Eocene [117]

                Felis catus Africa Eurasia Stenoplesictis Eocene [118119]Canis familiaris Eurasia NA Hesperocyon Eocene [120]Manis pentadactyla Eurasia Eurasia Eomanis Eocene [121]

                aIn cases of chimeric taxa we used the most common species from Springer et alrsquos [3] concatenated supermatrix NA North AmericaSA South AmericabArea of the oldest stem fossil belonging to the terminal branch represented by each living taxon

                Mammalian historical biogeography M S Springer et al 2485

                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                from Europe in the early Cenozoic and insectivoresthat arrived in the Neogene [124]

                Asher et al [125] Zack et al [126] and Tabuce et al[127] suggested that the geographical distributions ofliving afrotherians are not representative of the histori-cal geographical distribution of this clade and thatAfrotheria is Holarctic in origin based on the place-ment of extinct taxa from the Palaeocene of Laurasiawithin or at the base of Afrotheria However pseu-doextinction tests call into question the reliability ofthe placement of fossil taxa in morphological cladisticanalyses [3]

                The oldest xenarthran fossils are scutes from thePalaeocene of South America [71] Living membersof Xenarthra (anteaters sloths armadillos) are

                Phil Trans R Soc B (2011)

                restricted to South and Central America with theexception of the nine-banded armadillo whose ances-tors dispersed to North America during the GreatAmerican Interchange [128] Simpson [129130] sup-ported the view that South American xenarthransevolved in situ during South Americarsquos isolation fromother continents in the early Tertiary All of our ana-lyses are consistent with the hypothesis that SouthAmerica was the ancestral area for Xenarthra (figures3 and 4)

                The remaining placental orders are placed in Laur-asiatheria (Eulipotyphla Chiroptera PerissodactylaCetartiodactyla Carnivora Pholidota) and Euarchon-toglires (Primates Dermoptera Scandentia RodentiaLagomorpha) With the exception of bats these orders

                0204060

                NeogeneQuaternary

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                80

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                100

                OligEoceneCretaceousMesozoic

                Choloepus

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                MyrmecophagaEuphractus

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                32

                33

                34

                35

                36

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                Figure 4 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on the oldest fossil foreach lineage RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times and MAC par-simony was used to infer ancestral areas with the step matrix in figure 2 Areas for the oldest fossil lineage are enumerated intable 2 and are colour-coded as follows Africa blue Eurasia green North America brown South America red Nodes with

                unambiguous ancestral area reconstructions are shown with a single coloured circle nodes with ambiguous reconstructions areshown with two or more circles and each coloured circle corresponds to a different reconstruction

                2486 M S Springer et al Mammalian historical biogeography

                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                have first fossil occurrences that are exclusively Laura-sian Our reconstructions provide support for Eurasiabut not North America as the ancestral area for theseclades (figures 3 and 4) These results are consistent

                Phil Trans R Soc B (2011)

                with previous suggestions that Cretaceous zhelestidsand zamlambdalestids from Asia are members ofcrown Placentalia [131132] Further the fossilrecord suggests that Eutheria were dominant in

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                Mammalian historical biogeography M S Springer et al 2487

                Phil Trans R Soc B (2011)

                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

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                0100

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                20

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                00

                00010

                0110

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                0010

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                0110

                (Con

                tinued

                )

                Mammalian historical biogeography M S Springer et al 2489

                Phil Trans R Soc B (2011)

                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                Tab

                le4

                (Con

                tinued

                )

                clad

                e

                nod

                en

                o

                (figu

                re4)

                FP

                -MB

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                21

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                25

                0100

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                06

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                5

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                s26

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                mat

                es28

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                35

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                9

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                9

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                orp

                ha

                37

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                0001

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                0001

                0001

                00

                0

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                0

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                0

                09

                700

                0

                00

                0

                00

                0

                09

                300

                0

                00

                0

                00

                0

                10

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                0

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                00

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                idea

                38

                0001

                0001

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                00

                0

                00

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                09

                900

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                e39

                0000

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                0100

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                0000

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                0100

                0100

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                0010

                Cast

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                40

                0010

                0010

                0010

                0010

                0010

                00

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                00

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                1

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                9

                00

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                00

                0

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                9

                00

                000

                0

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                09

                9

                00

                0M

                uri

                dae

                42

                0100

                0100

                0100

                0100

                0100

                00

                0

                09

                7

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                0

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                000

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                4

                00

                0

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                09

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                00

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                000

                0

                09

                8

                00

                1

                00

                0

                2490 M S Springer et al Mammalian historical biogeography

                Phil Trans R Soc B (2011)

                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                Table 5 Comparison of different methods for reconstructing ancestral areas NA1 not applicable for monomorphic

                reconstruction methods NA2 not applicable when the maximum number of areas is set at two NA2 not applicable formethods that employ single multistate charactersa

                FP-MBC FP-SMCMACParsimony DIVA DIVA-2 DEC DEC-2 SM-MBC SM-SMC

                nodes with ambiguous 75 129 128 1211 107 2323 2623 1617 614reconstructionsb 1920 1718 1012 410

                nodes with 2 areasc 33 NA1 46 1618 1516 1820 2019 77 NA11720 1717 46

                nodes with 3 areasd 00 NA1 00 65 NA2 66 NA2 00 NA145 00

                empty nodese 95 NA3 NA3 NA3 NA3 NA3 NA3 34 NA344

                aNumbers before slashes are based on analyses with area coding for extant taxa and numbers after slashes are based on analyses with areacoding for the oldest fossil See table 3 for abbreviationsbFor FP-MBC nodes were considered ambiguous if at least one area was reconstructed as (01) For SM-MBC and SM-SMC nodes wereconsidered ambiguous if the posterior probability (PP) of at least one area was 01 PP 09 (top line) or 02 PP 08 (bottom line)For DEC and DEC-2 nodes were considered ambiguous if the frequency ( f ) of at least one area was 01 f 09 (top line) or 02 p 08 (bottom line)cAt least two areas in at least one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) was takento include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line) or020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02 (bottomline)dAt least three areas in more than one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) wastaken to include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line)or 020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02(bottom line)eFor FP-MBC nodes were considered empty if all areas were reconstructed as 0 For SM-MBC nodes were considered empty if posteriorprobabilities were 010 (top line) or 020 (bottom line) for all four areas

                Mammalian historical biogeography M S Springer et al 2491

                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                Eurasia throughout the Cretaceous but were absentfrom North America through much of the Late Cre-taceous and only attained appreciable diversity thereduring the last approximately 10 Myr of the period[133134] Boyer et al [135] concluded that theIndian subcontinent Eurasia and Africa are morelikely places of origin for Euarchonta than is NorthAmerica This agrees with our ancestral areareconstructions (figures 3 4 and tables 3 4)

                Although there is robust support for the monophylyof Xenarthra Afrotheria and Boreoeutheria relation-ships among these three groups and the root of theplacental tree remain contentious [105460ndash63136]Murphy et al [62] and Springer et al [10] suggested acausal relationship between the sundering of Africa andSouth America and basal cladogenesis among crown-group placental mammals given the coincidence ofmolecular dates for the base of placentals and thevicariant separation of Africa and South Americaapproximately 100ndash120 Ma

                Asher et al [125] analysed a combined matrix andrecovered Afrotheria in a nested position within Pla-centalia which contradicts the hypothesis that theplate tectonic separation of Africa and South Americaplayed a causal role in the early cladogenesis of placen-tal mammals However the nested position forAfrotheria resulted from the paraphyly of Euarchonto-glires Glires and Rodentia Rare genomic changesconfirm the monophyly of Xenarthra [137] Afrotheria[138ndash142] Euarchontoglires [139141142] Laura-siatheria [139141142] and Boreoeutheria[139141142] and preclude a nested position forAfrotheria in the placental tree

                Rare genomic changes have also been used toexamine the position of the placental root Kriegs

                Phil Trans R Soc B (2011)

                et al [139] reported LINE insertions that are sharedby Epitheria whereas Murphy et al [16] discoveredrare genomic changes that support AtlantogenataNishihara et al [142] performed genome-wide retro-poson analyses and found 22 25 and 21 LINEinsertions for Exafroplacentalia Epitheria and Atlan-togenata respectively Based on these resultsNishihara et al [142] concluded that XenarthraAfrotheria and Boreoeutheria diverged from oneanother nearly simultaneously They also suggested anew palaeogeographical model for the breakup of Pan-gaea and Gondwana in which Africa becomes isolatedfrom both South America and Laurasia at approxi-mately 120 Ma and argued that these coeval platetectonic events provide an explanation for the simul-taneous divergence of Afrotheria Xenarthra andBoreoeutheria However relaxed clock dates for thebase of Placentalia are closer to 100 Ma than to120 Ma (figures 3 and 4) A second difficulty concernsthe opening of the South Atlantic Nishihara et al[142] suggested that the Brazilian Bridge which rep-resented the last connection between Africa andSouth America was severed at approximately120 Mya but other recent reconstructions suggestthat the connection between the South Atlantic andCentral Atlantic was not established until lateAptianmid-Albian times (approx 110ndash100 Ma)[143144]

                8 THE IMPORTANCE OF DISPERSALIn the context of pre-plate tectonic views of theEarth Simpson [2] proposed three types ofmigration routes to describe the movement of ani-mals corridors filter bridges and sweepstakes

                Africa

                Mad

                agas

                car

                Tanzania

                Mozambique

                N

                100 mi

                Figure 5 Present day surface ocean currents in the Mozam-bique Channel (solid arrows) are southndashsouthwest andwould not have facilitated west to east transoceanic dispersalfrom Africa to Madagascar [153] By contrast westerly sur-face ocean currents in the Eocene (dashed arrows) would

                have facilitated dispersal across the Mozambique Channelfrom Africa to Madagascar especially during tropicalstorms [154] The outline of Madagascar with dashed linesshows its approximate position relative to Africa during theEocene

                2492 M S Springer et al Mammalian historical biogeography

                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                dispersal Corridors connect two areas and are per-meable to all animals filter bridges impose selectivebarriers that affect some but not all animals andsweepstakes dispersal is required when there arestrong barriers to migration such as high mountainbarriers or oceans

                Simpson [2] suggested that Madagascarrsquos livingmammals were the product of sweepstakes dispersalfrom Africa to Madagascar Sweepstakes dispersalhypotheses fell out of favour with the validation ofplate tectonic theory and were summarily dismissedas lsquomiraculousrsquo hypotheses with no scientific basis[145] However it has become apparent that some dis-tributional patterns can only be explained bysweepstakes dispersal [146] Observational data alsoprovide support for long-distance vertebrate dispersal[147] Examples of low probability sweepstakes disper-sal involving mammals include the origins of theendemic mammal fauna in Madagascar and theoccurrence of caviomorph rodents and platyrrhine pri-mates in South America

                Madagascarrsquos strictly terrestrial extant mammal faunaincludes endemic lineages from four placental orderstenrecs (Afrosoricida) euplerids (Carnivora) neso-myines (Rodentia) and lemurs (Primates) In eachlineage Madagascar endemics comprise monophyleticassemblages with closest living relatives in Africa[148149] Madagascar separated from Africa approxi-mately 165 Ma but maintained its connection withAntarctica via the Kerguelen Plateau until as late as80 Ma at which time it became permanentlyseparated from other Gondwanan landmasses This his-tory suggests that Madagascarrsquos terrestrial endemicmammals are either the ancient descendants of vicariantevents that occurred prior to 80 Ma or reached Mada-gascar via transoceanic sweepstakes dispersal at a latertime Another possibility is that a land bridge connectedAfrica and Madagascar between 45 and 26 Ma [150]

                Molecular divergence dates suggest that all fourendemic lineages last shared a common ancestorwith their African sister group in the Cenozoic[148149151152] Poux et al [148] concluded thatdispersal by lemurs rodents and carnivorans musthave occurred by transoceanic dispersal rather thanland bridge dispersal based on molecular dates forthe colonization of Madagascar that were outside ofthe land bridge window ie 60ndash50 Ma for lemurs26ndash19 Ma for carnivorans and 24ndash20 Ma for rodentsHowever present ocean currents allow for dispersalfrom Madagascar to Africa but oppose reciprocal dis-persal from Africa to Madagascar across theMozambique Channel If ocean currents were thesame for most of the Cenozoic as they are todaythey would not have facilitated west to east transocea-nic dispersal across the Mozambique Channel becauseof the strong southndashsouthwest flow of the Mozambi-que Current [153]

                Ali amp Huber [154] addressed this problem by simu-lating surface ocean currents in the Indian Oceanduring the Eocene They concluded that large-scaleocean current systems in the Eocene were profoundlydifferent from modern observed circulatory patternsand that the flow along the African coast was eastwardtowards Madagascar instead of southward through the

                Phil Trans R Soc B (2011)

                Mozambique Channel (figure 5) Ali amp Huber [154]further suggested that dispersal probabilities wereenhanced by tropical storms that (i) generated largefloating tree islands that would have allowed for asuccessful oceanic voyage and (ii) acceleratedtransportation rates from Africa to Madagascar thatwould have allowed for complete crossing of theMozambique Channel in 25ndash30 days

                The dispersal of four groups of fully terrestrialmammals from Africa to Madagascar at a time whenthere was no land bridge is a testament to the impor-tance of rare sweepstakes events in the evolutionaryhistory of Placentalia Even more remarkable is theoccurrence of two different groups of placental mam-mals hystricognath rodents and anthropoid primatesin Africa and South America

                Hystricognathi includes Hystricidae (Old World por-cupines) and Phiomorpha (eg cane rats dassie rats)from the Old World and Caviomorpha (eg porcupineschinchillas) from the New World The oldest hystricog-naths are from the late Eocene Egypt and have beendated at approximately 37 Ma [81] Old World hystri-cognaths are paraphyletic usually with phiomorphshaving closer phylogenetic affinities to South Americancaviomorphs than to hystricids [14155156] Relaxedclock dates suggest that South American caviomorphslast shared a common ancestor with phiomorphsbetween 45 and 36 Ma [81155157] The most recentcommon ancestor of Caviomorpha has been dated at45ndash31 Ma [81155157158]

                PacificOcean

                NorthAtlanticOcean

                SouthAtlantic Ocean

                IndianOcean

                NorthAmerica

                SouthAmerica

                Africa

                Antarctica

                Australia

                Asia

                Europe

                PacificOcean1b

                1b

                1a3

                2

                Middle Eocene

                Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

                South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

                Mammalian historical biogeography M S Springer et al 2493

                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

                The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

                Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

                Phil Trans R Soc B (2011)

                phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

                9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

                The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

                Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

                or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

                node number (figure 7) Eick et al [12] re-analysis

                1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

                ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

                3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

                4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

                9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

                10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

                11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

                12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

                ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

                13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

                ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

                BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

                14 A A B C AC BC ABC15 A A B C AC BC

                16 A A B C17 A A B AC BC ABC

                2494 M S Springer et al Mammalian historical biogeography

                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

                We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

                Phil Trans R Soc B (2011)

                Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

                FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

                1

                2

                3

                4

                56

                7

                8

                9

                10

                11

                1213

                14

                1516

                17

                EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

                Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

                Mammalian historical biogeography M S Springer et al 2495

                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

                10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

                In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

                Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

                Phil Trans R Soc B (2011)

                sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

                In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

                11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

                In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

                With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

                12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

                2496 M S Springer et al Mammalian historical biogeography

                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

                MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

                REFERENCES1 Jones K E amp Safi K 2011 Ecology and evolution of

                mammalian biodiversity Phil Trans R Soc B 366

                2451ndash2461 (doi101098rstb20110090)2 Simpson G G 1940 Mammals and land bridges

                J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

                Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

                4 Springer M S Meredith R W Eizirik E Teeling

                E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

                5 Bollback J P 2006 SIMMAP stochastic charactermapping of discrete traits on phylogenies BMC Bioin-form 7 88 (doi1011861471-2105-7-88)

                6 Drummond A J Ho S Y W Phillips M J amp Ram-baut A 2006 Relaxed phylogenetics and dating withconfidence PLoS Biol 4 e88 (doi101371journalpbio0040088)

                7 Zuckerkandl E amp Pauling L 1962 Molecular diseaseevolution and genetic heterogeneity In Horizons in bio-chemistry (eds M Kasha amp B Pullman) pp 189ndash225New York NY Academic Press

                8 Douady C J amp Douzery E J P 2003 Molecular esti-mation of eulipotyphlan divergence times and theevolution of lsquoInsectivorarsquo Mol Phylogenet Evol 28285ndash296 (doi101016S1055-7903(03)00119-2)

                9 Douady C J Catzeflis F Raman J Springer M S

                amp Stanhope M J 2003 Molecular evidence for theSahara as a vicariant agent and the role of Miocene cli-matic events in the diversification of the mammalianorder Macroscelidea (elephant shrews) Proc NatlAcad Sci USA 100 8325ndash8330 (doi101073pnas

                0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

                S J 2003 Placental mammal diversification and theCretaceousndashTertiary boundary Proc Natl Acad SciUSA 100 1056ndash1061 (doi101073pnas0334222

                100)11 Delsuc F Vizcaıno S F amp Douzery E J P 2004

                Influence of Tertiary paleoenvironmental changes onthe diversification of South American mammals a

                relaxed molecular clock study within xenarthransBMC Evol Biol 4 11 (doi1011861471-2148-4-11)

                Phil Trans R Soc B (2011)

                12 Eick G N Jacobs D S amp Matthee C A 2005 Anuclear DNA phylogenetic perspective on the evolutionof echolocation and historical biogeography of extant

                bats (Chiroptera) Mol Biol Evol 22 1869ndash1886(doi101093molbevmsi180)

                13 Teeling E C Springer M S Madsen O Bates POrsquoBrien S J amp Murphy W J 2005 A molecular phy-logeny for bats illuminates biogeography and the fossil

                record Science 307 580ndash584 (doi101126science1105113)

                14 Huchon D Chevret P Jordan U Kilpatrick C WRanwez V Jenkins P D Brosius J amp Schmitz J

                2007 Multiple molecular evidences for a living mamma-lian fossil Proc Natl Acad Sci USA 104 7495ndash7499(doi101073pnas0701289104)

                15 Janecka J E Miller W Pringle T H Wiens FZitzmann A Helgen K M Springer M S amp

                Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

                16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

                the root of the placental mammal tree Genome Res 17413ndash421 (doi101101gr5918807)

                17 Beck R M 2008 A dated phylogeny of marsupialsusing a molecular supermatrix and multiple fossil con-straints J Mammal 89 175ndash189 (doi10164406-

                MAMM-A-4371)18 Meredith R W Westerman M amp Springer M S

                2008 A timescale and phylogeny for lsquobandicootsrsquo (Pera-melemorphia Marsupialia) based on sequences for five

                nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

                19 Meredith R W Westerman M amp Springer M S2008 Phylogeny and timescale for the living genera ofkangaroos and kin (Macropodiformes Marsupialia)

                based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

                20 Meredith R W Westerman M amp Springer M S 2009A phylogeny of Diprotodontia (Marsupialia) based onsequences for five nuclear genes Mol Phylogenet Evol51 554ndash571 (doi101016jympev200902009)

                21 Meredith R W Krajewski C Westerman W ampSpringer M S 2009 Relationships and divergencetimes among the orders and families of marsupialsMus N Ariz Bull 65 383ndash406

                22 Chatterjee H J Ho S W Y Barnes I amp Groves C2009 Estimating the phylogeny and divergence times ofprimates using a supermatrix approach BMC EvolBiol 9 259 (doi1011861471-2148-9-259)

                23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

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                estimating divergence times in the absence of rate con-stancy Mol Biol Evol 14 1218ndash1231

                25 Sanderson M J 2002 Estimating absolute rates of mol-

                ecular evolution and divergence times a penalizedlikelihood approach Mol Biol Evol 19 101ndash109

                26 Thorne J L amp Kishino H 2002 Divergence time andevolutionary rate estimation with multilocus data SystBiol 51 689ndash702 (doi10108010635150290102456)

                27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

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                28 Battistuzzi F U Filipski A Hedges S B amp KumarS 2010 Performance of relaxed-clock methods in esti-mating evolutionary divergence times and their

                credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

                29 Brown R P amp Yang Z 2010 Bayesian dating of shal-low phylogenies with a relaxed molecular clock SystBiol 59 119ndash131 (doi101093sysbiosyp082)

                30 Inoue J Donoghue P C J amp Yang Z 2010 Theimpact of the representation of fossil calibrations onBayesian estimation of species divergence times SystBiol 59 74ndash89 (doi101093sysbiosyp078)

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                32 Simpson G G 1965 The geography of evolution collectedessays PhiladelphiaNew York PANY Chilton Books

                33 Ronquist F 1997 Dispersalndashvicariance analysis a newapproach to the quantification of historical biogeogra-phy Syst Biol 45 195ndash203 (doi101093sysbio461195)

                34 Wen J Xiang Q-Y Qian H Li J Want X-W amp

                Ickert-Bond S M Intercontinental and intracontinen-tal biogeographymdashpatterns and methods J Syst Evol4 327ndash329

                35 Nylander J A A Olsson U Alstrom P amp Sanmar-tın I 2008 Accounting for phylogenetic uncertainty

                in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

                36 Ree R H Moore B R Webb C O amp Donoghue

                M J 2005 A likelihood framework for inferring theevolution of geographic range on phylogenetic treesEvolution 59 2299ndash2311

                37 Ree R H amp Smith S A 2008 Maximum likelihoodinference of geographic range evolution by dispersal

                local extinction and cladogenesis Syst Biol 57 4ndash14 (doi10108010635150701883881)

                38 Hardy C R amp Linder H P 2005 Intraspecific varia-bility and timing in ancestral ecology reconstruction atest case from the Cape flora Syst Biol 54 299ndash316

                (doi10108010635150590923317)39 Maddison W P amp Maddison D R 1992 MacClade

                version 3 analysis of phylogeny and character evolutionSunderland MA Sinauer Associates

                40 Clark J R Ree R H Alfaro M E King M G

                Wagner W L amp Roalson E H 2008 A comparativestudy in ancestral range reconstruction methodsretracing the uncertain histories of insular lineagesSyst Biol 57 693ndash707 (doi101080106351508

                02426473)41 Patterson C 1982 Morphological characters and hom-

                ology In Problems of phylogenetic reconstruction (eds K AJoysey amp A E Friday) pp 21ndash74 London UK Aca-demic Press

                42 Ree R H amp Sanmartın I 2009 Prospects and chal-lenges for parametric models in historicalbiogeographical inference J Biogeogr 36 1211ndash1220(doi101111j1365-2699200802068x)

                43 Lamm K S amp Redelings B D 2009 Reconstructing

                ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

                44 Maddison W P amp Maddison D R 2009 Mesquite amodular system for evolutionary analysis version 272See httpmesquiteprojectorg

                45 Wojcicki M amp Brooks D R 2005 PACT an efficientand powerful algorithm for generating area cladogramsJ Biogeogr 32 755ndash774 (doi101111j1365-2699200401148x)

                Phil Trans R Soc B (2011)

                46 Lim B K 2008 Historical biogeography of New Worldemballonurid bats (Tribe Diclidurini) taxon pulsediversification J Biogeogr 35 1385ndash1401 (doi10

                1111j1365-2699200801888x)47 Lim B K 2009 Review of the origins and biogeogra-

                phy of bats in South America Chiroptera Neotropical15 391ndash410

                48 Donoghue M J amp Moore B R 2003 Toward an inte-

                grative historical biogeography J Int Comp Biol 43261ndash270 (doi101093icb432261)

                49 Krause D W OrsquoConnor P M Rogers K C Samp-son S D Buckley G A amp Rogers R R 2006 Late

                Cretaceous terrestrial vertebrates from Madagascarimplications for Latin American biogeography AnnMo Bot Gard 93 178ndash208 (doi1034170026-6493(2006)93[178LCTVFM]20CO2)

                50 Sereno P C Wilson J A amp Conrad J L 2004 New

                dinosaurs link southern landmasses in the Mid-Cretac-eous Proc R Soc Lond B 271 1325ndash1330 (doi101098rspb20042692)

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                356121a0)52 Novacek M J 1993 Reflections on higher mammalian

                phylogenetics J Mamm Evol 1 1064ndash755453 Springer M S Cleven G C Madsen O de Jong

                W W Waddell V G Amrine H M amp Stanhope

                M J 1997 Endemic African mammals shake the phylo-genetic tree Nature 388 61ndash64 (doi10103840386)

                54 Springer M S Murphy W J Eizirik E amp OrsquoBrienS J 2005 Molecular evidence for major placental

                clades In The rise of placental mammals origins andrelationships of the major extant clades (eds K D Roseamp J D Archibald) pp 37ndash49 Baltimore MD JohnsHopkins University Press

                55 Stanhope M J Madsen O Waddell V G Cleven

                G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

                56 Stanhope M J Waddell V G Madsen O de Jong

                W W Hedges S B Cleven G C Kao D ampSpringer M S 1998 Molecular evidence for multipleorigins of Insectivora and for a new order of endemicAfrican insectivore mammals Proc Natl Acad SciUSA 95 9967ndash9972 (doi101073pnas95179967)

                57 Waddell P Okada N amp Hasegawa M 1999 Towardsresolving the interordinal relationships of placentalmammals Syst Biol 48 1ndash5 (doi101093sysbio4811)

                58 Waddell P J Kishino H amp Ota R 2001 A phyloge-netic foundation for comparative mammaliangenomics Genome Inform 12 141ndash154

                59 Eizirik E Murphy W J amp OrsquoBrien S J 2001 Mol-ecular dating and biogeography of the early placental

                mammal radiation J Hered 92 212ndash219 (doi101093jhered922212)

                60 Madsen O et al 2001 Parallel adaptive radiations intwo major clades of placental mammals Nature 409610ndash614 (doi10103835054544)

                61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

                62 Murphy W J et al 2001 Resolution of the early placen-

                tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

                63 Scally M Madsen O Douady C J de Jong W WStanhope M J amp Springer M S 2001 Molecular

                2498 M S Springer et al Mammalian historical biogeography

                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

                64 Springer M S amp de Jong W W 2001 Which mamma-lian supertree to bark up Science 291 1709ndash1711

                65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

                (doi101093bioinformaticsbtl446)66 Benton M J amp Donoghue P C J 2007 Paleontologi-

                cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

                67 Reisz R R amp Muller J 2004 Molecular timescales andthe fossil record a paleontological perspective TrendsGenet 20 237ndash241 (doi101016jtig200403007)

                68 Muller J amp Reisz R R 2005 Four well-constrainedcalibration points from the vertebrate fossil record for

                molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

                69 Gradstein F M amp Ogg J G 2009 The geologic timescale In The timetree of life (eds S B Hedges amp SKumar) pp 26ndash34 Oxford UK Oxford University Press

                70 Gheerbrant E 2009 Paleocene emergence of elephantrelatives and the rapid radiation of African ungulatesProc Natl Acad Sci USA 106 10717ndash10721(doi101073pnas0900251106)

                71 Bergqvist L P Abrantes E A L amp Avilla L D S

                2004 The Xenarthra (Mammalia) of Sao Jose de Ita-boraı Basin (upper Paleocene Itaboraian) Rio deJaneiro Brazil Geodiversitas 26 323ndash337

                72 Carlini A A Pascual R Reguero M A Scillato-

                Yane G J Tonni E P amp Vizcaıno S F 1990 Thefirst Paleogene land placental mammal from Antarcticaits paleoclimatic and paleobiogeographical bearings InAbstracts IV International Congress of Systematic and Evol-utionary Biology (eds B Cox amp J Reveal) 325 p

                Baltimore MD University of Maryland73 Vizcaıno S F amp Scillato-Yane G J 1995 An Eocene

                Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

                74 Benton M J Donoghue P C J amp Asher R J 2009

                Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

                75 Flynn J J 1996 Carnivoran phylogeny and rates ofevolution morphological taxonomic and molecular

                In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

                76 Hunt Jr R M amp Tedford R H 1993 Phylogenetic

                relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

                77 Wesley-Hunt G D amp Flynn J J 2005 Phylogeny ofthe Carnivora basal relationships among the carnivora-morphans and assessment of the position oflsquoMiacoidearsquo relative to Carnivora J Syst Palaeontol 31ndash28 (doi101017S1477201904001518)

                78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

                79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

                Phil Trans R Soc B (2011)

                80 Storch G amp Seiffert C 2007 Extraordinarily preservedspecimen of the oldest known glirid from the middleEocene of Messel (Rodentia) J Vertebr Paleontol 27

                189ndash194 (doi1016710272-4634(2007)27[189EPSOTO]20CO2)

                81 Sallam H M Seiffert E R Steiper M E amp SimonsE L 2009 Fossil and molecular evidence constrainscenarios for the early evolutionary and biogeographic

                history of hystricognathous rodents Proc Natl AcadSci USA 106 16 722ndash16 727 (doi101073pnas0908702106)

                82 Hartenberger L 1998 Description of the radiation of

                the Rodentia (Mammalia) from the Late Paleocene tothe Miocene phylogenetic consequences C R AcadSci II A 326 439ndash444

                83 Vucetich M G Verzi D H amp Hartenberger L 1999Review and analysis of the radiation of the South

                American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

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                UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

                amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

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                beds In Lothagam the dawn of humanity in EasternAfrica (eds J Leakey amp J Harris) pp 363ndash368New York NY Columbia University Press

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                98 Marivaux L Ducrocq S Jaeger J-J Marandat BSudre J Chaimanee Y Tun S T Htoon W ampSoe A N 2005 New remains of Pondaungimysanomaluropsis (Rodentia Anomaluroidea) from thelatest middle Eocene Pondaung Formation of

                Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

                99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

                100 Antoine P-O et al 2007 The middle Miocene (Laven-

                tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

                Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

                Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

                (doi1016710272-4634(2007)27[683OADOTO]20CO2)

                102 Frailey C D amp Campbell K E 2004 The rodents ofthe Santa Rosa Local Fauna In The Paleogene mamma-lian fauna of Santa Rosa Amazonian Peru (ed K E

                Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

                103 Martin T 2004 Evolution of incisor enamel micro-structure in Lagomorpha J Vertebr Paleontol 24

                411ndash426 (doi1016712513)104 Lopez-Martinez N 2008 The lagomorph fossil

                record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

                105 Marivaux L Bocat L Chaimanee Y Jaeger J-JMarandat B Srisuk P Tafforeau P Yamee C ampWelcomme L 2006 Cynocephalid dermopterans

                from the Palaeogene of South Asia (Thailand Myan-mar and Pakistan) systematic evolutionary andpalaeobiogeographic implications Zool Scripta 35395ndash420 (doi101111j1463-6409200600235x)

                106 Tong Y 1988 Fossil tree shrews from the Eocene

                Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

                107 Godfrey L R amp Jungers W L 2002 Quaternary fossillemurs In The primate fossil record (ed W C Hartwig)pp 97ndash121 Cambridge UK Cambridge University

                Press108 Bajpai S Kay R F Williams B A Das D P

                Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

                Phil Trans R Soc B (2011)

                109 Beard K C Qi T Dawson M R Wang B amp Li C1994 A diverse new primate fauna from middle Eocenefissure-fillings in southeastern China Nature 368

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                F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

                111 Honey J G Harrison J A Prothero D R ampStevens M S 1998 Camelidae In Evolution of Tertiarymammals of North America terrestrial carnivoresungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp439ndash462 Cambridge UK Cambridge University Press

                112 Metais G amp Vislobokova I 2008 Basal ruminants In

                The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

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                E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

                114 Bowen G J Clyde W C Koch P L Ting SAlroy J Tsubamoto T Wang Y amp Wang Y 2002Mammalian dispersal at the PaleoceneEocene bound-

                ary Science 295 2062ndash2065 (doi101126science1068700)

                115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

                earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

                116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

                117 Colbert M W amp Schoch R M 1998 Tapiroidea and

                other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

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                120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

                cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

                121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

                122 Huelsenbeck J P amp Ronquist F 2001 MrBAYESBayesian inference of phylogenetic trees Bioinformatics17 754ndash755 (doi101093bioinformatics178754)

                123 Ronquist F amp Huelsenbeck J P 2003 MrBayes 3Bayesian phylogenetic inference under mixed modelsBioinformatics 19 1572ndash1574 (doi101093bioinfor-maticsbtg180)

                2500 M S Springer et al Mammalian historical biogeography

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                125 Asher R J Novacek M J amp Geisler J G 2003

                Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

                126 Zack S P Penkrot T A Bloch J I amp Rose K D

                2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

                127 Tabuce R Marivaux L Adaci M Bensalah M

                Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

                128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

                129 Simpson G G 1951 History of the fauna of Latin

                America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

                130 Simpson G G 1978 Early mammals in South Amer-ica fact controversy and mystery Proc Am PhilSoc 122 318ndash328

                131 Archibald J D 1996 Fossil evidence for a Late Cretac-eous origin of lsquohoofedrsquo mammals Science 272 1150ndash1153 (doi101126science27252651150)

                132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

                133 Cifelli R L amp Davis B M 2003 Marsupial origins

                Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

                2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

                135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

                eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

                136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

                pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

                W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

                260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

                N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

                139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

                Phil Trans R Soc B (2011)

                140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

                141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

                0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

                roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

                of mammals Proc Natl Acad Sci USA 106 5235ndash5240

                143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

                144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

                145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

                146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

                73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

                dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

                148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

                108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

                dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                37091305110239)150 McCall R 1997 Implications of recent geological

                investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

                151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

                152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

                153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

                154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

                155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

                caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

                156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

                Mammalian historical biogeography M S Springer et al 2501

                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

                157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

                158 Rowe D L Dunn K A Adkins R M amp Honeycutt

                R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

                159 Beard K C Wang B Dawson M Huang X amp

                Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

                160 Beard K C amp Wang J 2004 The eosimiid primates

                (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

                161 Arnason U Gullberg A Schweizer B A amp Janke A

                2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

                162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

                163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

                164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

                513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

                ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

                AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

                diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

                167 Gunnell G F amp Simmons N B 2005 Fossil evidence

                and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                Wyoming and the evolution of flight and echolocationNature 451 818ndash822

                169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

                paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

                171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

                ian evolution Science 302 1934ndash1939 (doi101126science1090718)

                172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

                Phil Trans R Soc B (2011)

                dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

                D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

                174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

                from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                175 Cifelli R L 1993 Theria of metatherianndasheutherian

                grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                177 Wible J R 1990 Late Cretaceous marsupial petrosal

                bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                181 Beck R M Godthelp H Weisbecker V Archer M

                amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                2502 M S Springer et al Mammalian historical biogeography

                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                Phil Trans R Soc B (2011)

                Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                191 Springer M S amp Krajewski C 2009 Monotremes

                (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                • The historical biogeography of Mammalia
                  • Introduction
                  • Phylogeny reconstruction
                  • Molecular dating analyses
                  • Ancestral area reconstruction
                  • Box 1
                  • Ancestral area chronograms and palaeogeography
                  • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                  • Placental biogeography
                  • The importance of dispersal
                  • Bat biogeography
                  • Marsupial biogeography
                  • Monotreme biogeography
                  • Conclusions
                  • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
                  • REFERENCES

                  Table 2 Geographical area of extant taxa and oldest fossils used in ancestral area reconstruction

                  taxona area of extant species area of oldest fossilb

                  Choloepus didactylus SA SA Megalonychidae Miocene [87]Tamandua tetradactyla SA SA Tamandua Pleistocene [87]

                  Myrmecophaga tridactyla SA SA Neotamandua Miocene [8788]Euphractus sexcinctus SA SA Zaedyus Pliocene [8789]Chaetophractus villosus SA SA Chaetophractus Pliocene [90]Erinaceus europaeus Eurasia NA Adunator Palaeocene [74]Talpa altaica Eurasia Eurasia Eotalpa Eocene [91]

                  Sorex araneus Eurasia NA Domnina Eocene [92]Echinops telfairi Africa Africa Widanelfarasia Eocene [93]Amblysomus hottentotus Africa Africa Eochrysochloris Oligocene [93]Procavia capensis Africa Africa Seggeurius Eocene [94]

                  Loxodonta africana Africa Africa Eritherium Palaeocene [70]Macroscelides proboscideus Africa Africa Macroscelides Pliocene [95]Elephantulus rufescens Africa Africa Elephantulus Pliocene [95]Orycteropus afer Africa Africa Orycteropus Miocene [96]Tamias striatus NA NA Spurimus Eocene [97]

                  Muscardinus avellanarius Eurasia Eurasia Eogliravus Eocene [80]Mus musculus Eurasia Eurasia Progonomys Miocene [74]Rattus norvegicus Eurasia Eurasia Karnimata Miocene [74]Pedetes capensis Africa Africa Pondaungimys Eocene [98]Hystrix brachyurus Eurasia Africa Gaudeamus Eocene [81]

                  Castor canadensis NA NA Mattimys Eocene [84]Dipodomys merriami NA NA Proheteromys Oligocene [99]Cavia porcellus SA SA Prodolichotis Miocene [83100]Hydrochaeris hydrochaeris SA SA Cardiatherium Miocene [101]Erethizon dorsatum NA SA Eopululo Eocene [102]

                  Sylvilagus floridanus NA SA Eurasia tarsal elements Eocene [79]Ochotona princeps NA Eurasia Sinolagomys Oligocene [103104]Cynocephalus variegatus Eurasia Eurasia Dermotherium Eocene [105]Tupaia minor Eurasia Eurasia Eodendrogale Eocene [106]Lemur catta Africa Africa Pachylemur Quaternary [107]

                  Homo sapiens Eurasia NA SA Africa Eurasia Anthrasimias Palaeocene [108]Tarsius syrichta Eurasia Eurasia Tarsius Eocene [109]Hippopotamus amphibius Africa Africa Morotochoerus Miocene [110]Lama glama SA NA Poebrodon Eocene [111]

                  Tragelaphus eurycerus Africa Eurasia Archaeomeryx Eocene [112]Sus scrofa Eurasia Africa Eurasia Eocenchoerus Eocene [113]Equus caballus Eurasia Eurasia NA Hyracotherium Eocene [78114115]Ceratotherium simum Africa NA Hyracodontidae Eocene [116]Tapirus indicus Eurasia NA Helaletes Eocene [117]

                  Felis catus Africa Eurasia Stenoplesictis Eocene [118119]Canis familiaris Eurasia NA Hesperocyon Eocene [120]Manis pentadactyla Eurasia Eurasia Eomanis Eocene [121]

                  aIn cases of chimeric taxa we used the most common species from Springer et alrsquos [3] concatenated supermatrix NA North AmericaSA South AmericabArea of the oldest stem fossil belonging to the terminal branch represented by each living taxon

                  Mammalian historical biogeography M S Springer et al 2485

                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                  from Europe in the early Cenozoic and insectivoresthat arrived in the Neogene [124]

                  Asher et al [125] Zack et al [126] and Tabuce et al[127] suggested that the geographical distributions ofliving afrotherians are not representative of the histori-cal geographical distribution of this clade and thatAfrotheria is Holarctic in origin based on the place-ment of extinct taxa from the Palaeocene of Laurasiawithin or at the base of Afrotheria However pseu-doextinction tests call into question the reliability ofthe placement of fossil taxa in morphological cladisticanalyses [3]

                  The oldest xenarthran fossils are scutes from thePalaeocene of South America [71] Living membersof Xenarthra (anteaters sloths armadillos) are

                  Phil Trans R Soc B (2011)

                  restricted to South and Central America with theexception of the nine-banded armadillo whose ances-tors dispersed to North America during the GreatAmerican Interchange [128] Simpson [129130] sup-ported the view that South American xenarthransevolved in situ during South Americarsquos isolation fromother continents in the early Tertiary All of our ana-lyses are consistent with the hypothesis that SouthAmerica was the ancestral area for Xenarthra (figures3 and 4)

                  The remaining placental orders are placed in Laur-asiatheria (Eulipotyphla Chiroptera PerissodactylaCetartiodactyla Carnivora Pholidota) and Euarchon-toglires (Primates Dermoptera Scandentia RodentiaLagomorpha) With the exception of bats these orders

                  0204060

                  NeogeneQuaternary

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                  80

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                  OligEoceneCretaceousMesozoic

                  Choloepus

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                  Figure 4 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on the oldest fossil foreach lineage RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times and MAC par-simony was used to infer ancestral areas with the step matrix in figure 2 Areas for the oldest fossil lineage are enumerated intable 2 and are colour-coded as follows Africa blue Eurasia green North America brown South America red Nodes with

                  unambiguous ancestral area reconstructions are shown with a single coloured circle nodes with ambiguous reconstructions areshown with two or more circles and each coloured circle corresponds to a different reconstruction

                  2486 M S Springer et al Mammalian historical biogeography

                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                  have first fossil occurrences that are exclusively Laura-sian Our reconstructions provide support for Eurasiabut not North America as the ancestral area for theseclades (figures 3 and 4) These results are consistent

                  Phil Trans R Soc B (2011)

                  with previous suggestions that Cretaceous zhelestidsand zamlambdalestids from Asia are members ofcrown Placentalia [131132] Further the fossilrecord suggests that Eutheria were dominant in

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                  Phil Trans R Soc B (2011)

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                  00

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                  (Con

                  tinued

                  )

                  Mammalian historical biogeography M S Springer et al 2489

                  Phil Trans R Soc B (2011)

                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                  Tab

                  le4

                  (Con

                  tinued

                  )

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                  e

                  nod

                  en

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                  (figu

                  re4)

                  FP

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                  25

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                  35

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                  9

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                  9

                  00

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                  00

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                  00

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                  Cav

                  iom

                  orp

                  ha

                  37

                  0001

                  0001

                  0001

                  0001

                  0001

                  00

                  0

                  00

                  0

                  00

                  0

                  09

                  700

                  0

                  00

                  0

                  00

                  0

                  09

                  300

                  0

                  00

                  0

                  00

                  0

                  10

                  000

                  0

                  00

                  0

                  00

                  0

                  10

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                  idea

                  38

                  0001

                  0001

                  0001

                  0001

                  0001

                  00

                  0

                  00

                  0

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                  00

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                  09

                  900

                  0

                  00

                  0

                  00

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                  0

                  00

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                  00

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                  0

                  mou

                  se-r

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                  edcl

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                  e39

                  0000

                  1000

                  1000

                  1100

                  1100

                  07

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                  00

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                  0100

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                  ori

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                  41

                  0000

                  1000

                  1000

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                  00

                  0

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                  00

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                  00

                  1

                  06

                  9

                  00

                  000

                  2

                  00

                  6

                  09

                  2

                  00

                  0M

                  uri

                  dae

                  0100

                  0100

                  0010

                  0010

                  Cast

                  ori

                  morp

                  ha

                  40

                  0010

                  0010

                  0010

                  0010

                  0010

                  00

                  0

                  00

                  0

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                  8

                  00

                  000

                  0

                  03

                  1

                  08

                  9

                  00

                  000

                  0

                  00

                  0

                  09

                  9

                  00

                  000

                  0

                  00

                  1

                  09

                  9

                  00

                  0M

                  uri

                  dae

                  42

                  0100

                  0100

                  0100

                  0100

                  0100

                  00

                  0

                  09

                  7

                  00

                  0

                  00

                  000

                  0

                  09

                  4

                  00

                  0

                  00

                  000

                  0

                  09

                  9

                  00

                  1

                  00

                  000

                  0

                  09

                  8

                  00

                  1

                  00

                  0

                  2490 M S Springer et al Mammalian historical biogeography

                  Phil Trans R Soc B (2011)

                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                  Table 5 Comparison of different methods for reconstructing ancestral areas NA1 not applicable for monomorphic

                  reconstruction methods NA2 not applicable when the maximum number of areas is set at two NA2 not applicable formethods that employ single multistate charactersa

                  FP-MBC FP-SMCMACParsimony DIVA DIVA-2 DEC DEC-2 SM-MBC SM-SMC

                  nodes with ambiguous 75 129 128 1211 107 2323 2623 1617 614reconstructionsb 1920 1718 1012 410

                  nodes with 2 areasc 33 NA1 46 1618 1516 1820 2019 77 NA11720 1717 46

                  nodes with 3 areasd 00 NA1 00 65 NA2 66 NA2 00 NA145 00

                  empty nodese 95 NA3 NA3 NA3 NA3 NA3 NA3 34 NA344

                  aNumbers before slashes are based on analyses with area coding for extant taxa and numbers after slashes are based on analyses with areacoding for the oldest fossil See table 3 for abbreviationsbFor FP-MBC nodes were considered ambiguous if at least one area was reconstructed as (01) For SM-MBC and SM-SMC nodes wereconsidered ambiguous if the posterior probability (PP) of at least one area was 01 PP 09 (top line) or 02 PP 08 (bottom line)For DEC and DEC-2 nodes were considered ambiguous if the frequency ( f ) of at least one area was 01 f 09 (top line) or 02 p 08 (bottom line)cAt least two areas in at least one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) was takento include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line) or020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02 (bottomline)dAt least three areas in more than one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) wastaken to include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line)or 020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02(bottom line)eFor FP-MBC nodes were considered empty if all areas were reconstructed as 0 For SM-MBC nodes were considered empty if posteriorprobabilities were 010 (top line) or 020 (bottom line) for all four areas

                  Mammalian historical biogeography M S Springer et al 2491

                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                  Eurasia throughout the Cretaceous but were absentfrom North America through much of the Late Cre-taceous and only attained appreciable diversity thereduring the last approximately 10 Myr of the period[133134] Boyer et al [135] concluded that theIndian subcontinent Eurasia and Africa are morelikely places of origin for Euarchonta than is NorthAmerica This agrees with our ancestral areareconstructions (figures 3 4 and tables 3 4)

                  Although there is robust support for the monophylyof Xenarthra Afrotheria and Boreoeutheria relation-ships among these three groups and the root of theplacental tree remain contentious [105460ndash63136]Murphy et al [62] and Springer et al [10] suggested acausal relationship between the sundering of Africa andSouth America and basal cladogenesis among crown-group placental mammals given the coincidence ofmolecular dates for the base of placentals and thevicariant separation of Africa and South Americaapproximately 100ndash120 Ma

                  Asher et al [125] analysed a combined matrix andrecovered Afrotheria in a nested position within Pla-centalia which contradicts the hypothesis that theplate tectonic separation of Africa and South Americaplayed a causal role in the early cladogenesis of placen-tal mammals However the nested position forAfrotheria resulted from the paraphyly of Euarchonto-glires Glires and Rodentia Rare genomic changesconfirm the monophyly of Xenarthra [137] Afrotheria[138ndash142] Euarchontoglires [139141142] Laura-siatheria [139141142] and Boreoeutheria[139141142] and preclude a nested position forAfrotheria in the placental tree

                  Rare genomic changes have also been used toexamine the position of the placental root Kriegs

                  Phil Trans R Soc B (2011)

                  et al [139] reported LINE insertions that are sharedby Epitheria whereas Murphy et al [16] discoveredrare genomic changes that support AtlantogenataNishihara et al [142] performed genome-wide retro-poson analyses and found 22 25 and 21 LINEinsertions for Exafroplacentalia Epitheria and Atlan-togenata respectively Based on these resultsNishihara et al [142] concluded that XenarthraAfrotheria and Boreoeutheria diverged from oneanother nearly simultaneously They also suggested anew palaeogeographical model for the breakup of Pan-gaea and Gondwana in which Africa becomes isolatedfrom both South America and Laurasia at approxi-mately 120 Ma and argued that these coeval platetectonic events provide an explanation for the simul-taneous divergence of Afrotheria Xenarthra andBoreoeutheria However relaxed clock dates for thebase of Placentalia are closer to 100 Ma than to120 Ma (figures 3 and 4) A second difficulty concernsthe opening of the South Atlantic Nishihara et al[142] suggested that the Brazilian Bridge which rep-resented the last connection between Africa andSouth America was severed at approximately120 Mya but other recent reconstructions suggestthat the connection between the South Atlantic andCentral Atlantic was not established until lateAptianmid-Albian times (approx 110ndash100 Ma)[143144]

                  8 THE IMPORTANCE OF DISPERSALIn the context of pre-plate tectonic views of theEarth Simpson [2] proposed three types ofmigration routes to describe the movement of ani-mals corridors filter bridges and sweepstakes

                  Africa

                  Mad

                  agas

                  car

                  Tanzania

                  Mozambique

                  N

                  100 mi

                  Figure 5 Present day surface ocean currents in the Mozam-bique Channel (solid arrows) are southndashsouthwest andwould not have facilitated west to east transoceanic dispersalfrom Africa to Madagascar [153] By contrast westerly sur-face ocean currents in the Eocene (dashed arrows) would

                  have facilitated dispersal across the Mozambique Channelfrom Africa to Madagascar especially during tropicalstorms [154] The outline of Madagascar with dashed linesshows its approximate position relative to Africa during theEocene

                  2492 M S Springer et al Mammalian historical biogeography

                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                  dispersal Corridors connect two areas and are per-meable to all animals filter bridges impose selectivebarriers that affect some but not all animals andsweepstakes dispersal is required when there arestrong barriers to migration such as high mountainbarriers or oceans

                  Simpson [2] suggested that Madagascarrsquos livingmammals were the product of sweepstakes dispersalfrom Africa to Madagascar Sweepstakes dispersalhypotheses fell out of favour with the validation ofplate tectonic theory and were summarily dismissedas lsquomiraculousrsquo hypotheses with no scientific basis[145] However it has become apparent that some dis-tributional patterns can only be explained bysweepstakes dispersal [146] Observational data alsoprovide support for long-distance vertebrate dispersal[147] Examples of low probability sweepstakes disper-sal involving mammals include the origins of theendemic mammal fauna in Madagascar and theoccurrence of caviomorph rodents and platyrrhine pri-mates in South America

                  Madagascarrsquos strictly terrestrial extant mammal faunaincludes endemic lineages from four placental orderstenrecs (Afrosoricida) euplerids (Carnivora) neso-myines (Rodentia) and lemurs (Primates) In eachlineage Madagascar endemics comprise monophyleticassemblages with closest living relatives in Africa[148149] Madagascar separated from Africa approxi-mately 165 Ma but maintained its connection withAntarctica via the Kerguelen Plateau until as late as80 Ma at which time it became permanentlyseparated from other Gondwanan landmasses This his-tory suggests that Madagascarrsquos terrestrial endemicmammals are either the ancient descendants of vicariantevents that occurred prior to 80 Ma or reached Mada-gascar via transoceanic sweepstakes dispersal at a latertime Another possibility is that a land bridge connectedAfrica and Madagascar between 45 and 26 Ma [150]

                  Molecular divergence dates suggest that all fourendemic lineages last shared a common ancestorwith their African sister group in the Cenozoic[148149151152] Poux et al [148] concluded thatdispersal by lemurs rodents and carnivorans musthave occurred by transoceanic dispersal rather thanland bridge dispersal based on molecular dates forthe colonization of Madagascar that were outside ofthe land bridge window ie 60ndash50 Ma for lemurs26ndash19 Ma for carnivorans and 24ndash20 Ma for rodentsHowever present ocean currents allow for dispersalfrom Madagascar to Africa but oppose reciprocal dis-persal from Africa to Madagascar across theMozambique Channel If ocean currents were thesame for most of the Cenozoic as they are todaythey would not have facilitated west to east transocea-nic dispersal across the Mozambique Channel becauseof the strong southndashsouthwest flow of the Mozambi-que Current [153]

                  Ali amp Huber [154] addressed this problem by simu-lating surface ocean currents in the Indian Oceanduring the Eocene They concluded that large-scaleocean current systems in the Eocene were profoundlydifferent from modern observed circulatory patternsand that the flow along the African coast was eastwardtowards Madagascar instead of southward through the

                  Phil Trans R Soc B (2011)

                  Mozambique Channel (figure 5) Ali amp Huber [154]further suggested that dispersal probabilities wereenhanced by tropical storms that (i) generated largefloating tree islands that would have allowed for asuccessful oceanic voyage and (ii) acceleratedtransportation rates from Africa to Madagascar thatwould have allowed for complete crossing of theMozambique Channel in 25ndash30 days

                  The dispersal of four groups of fully terrestrialmammals from Africa to Madagascar at a time whenthere was no land bridge is a testament to the impor-tance of rare sweepstakes events in the evolutionaryhistory of Placentalia Even more remarkable is theoccurrence of two different groups of placental mam-mals hystricognath rodents and anthropoid primatesin Africa and South America

                  Hystricognathi includes Hystricidae (Old World por-cupines) and Phiomorpha (eg cane rats dassie rats)from the Old World and Caviomorpha (eg porcupineschinchillas) from the New World The oldest hystricog-naths are from the late Eocene Egypt and have beendated at approximately 37 Ma [81] Old World hystri-cognaths are paraphyletic usually with phiomorphshaving closer phylogenetic affinities to South Americancaviomorphs than to hystricids [14155156] Relaxedclock dates suggest that South American caviomorphslast shared a common ancestor with phiomorphsbetween 45 and 36 Ma [81155157] The most recentcommon ancestor of Caviomorpha has been dated at45ndash31 Ma [81155157158]

                  PacificOcean

                  NorthAtlanticOcean

                  SouthAtlantic Ocean

                  IndianOcean

                  NorthAmerica

                  SouthAmerica

                  Africa

                  Antarctica

                  Australia

                  Asia

                  Europe

                  PacificOcean1b

                  1b

                  1a3

                  2

                  Middle Eocene

                  Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

                  South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

                  Mammalian historical biogeography M S Springer et al 2493

                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                  Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

                  The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

                  Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

                  Phil Trans R Soc B (2011)

                  phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

                  9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

                  The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

                  Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

                  or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

                  node number (figure 7) Eick et al [12] re-analysis

                  1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

                  ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

                  3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

                  4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

                  9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

                  10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

                  11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

                  12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

                  ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

                  13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

                  ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

                  BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

                  14 A A B C AC BC ABC15 A A B C AC BC

                  16 A A B C17 A A B AC BC ABC

                  2494 M S Springer et al Mammalian historical biogeography

                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                  and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

                  We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

                  Phil Trans R Soc B (2011)

                  Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

                  FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

                  1

                  2

                  3

                  4

                  56

                  7

                  8

                  9

                  10

                  11

                  1213

                  14

                  1516

                  17

                  EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

                  Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

                  Mammalian historical biogeography M S Springer et al 2495

                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                  with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

                  10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

                  In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

                  Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

                  Phil Trans R Soc B (2011)

                  sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

                  In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

                  11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

                  In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

                  With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

                  12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

                  2496 M S Springer et al Mammalian historical biogeography

                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                  together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

                  MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

                  REFERENCES1 Jones K E amp Safi K 2011 Ecology and evolution of

                  mammalian biodiversity Phil Trans R Soc B 366

                  2451ndash2461 (doi101098rstb20110090)2 Simpson G G 1940 Mammals and land bridges

                  J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

                  Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

                  4 Springer M S Meredith R W Eizirik E Teeling

                  E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

                  5 Bollback J P 2006 SIMMAP stochastic charactermapping of discrete traits on phylogenies BMC Bioin-form 7 88 (doi1011861471-2105-7-88)

                  6 Drummond A J Ho S Y W Phillips M J amp Ram-baut A 2006 Relaxed phylogenetics and dating withconfidence PLoS Biol 4 e88 (doi101371journalpbio0040088)

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                  8 Douady C J amp Douzery E J P 2003 Molecular esti-mation of eulipotyphlan divergence times and theevolution of lsquoInsectivorarsquo Mol Phylogenet Evol 28285ndash296 (doi101016S1055-7903(03)00119-2)

                  9 Douady C J Catzeflis F Raman J Springer M S

                  amp Stanhope M J 2003 Molecular evidence for theSahara as a vicariant agent and the role of Miocene cli-matic events in the diversification of the mammalianorder Macroscelidea (elephant shrews) Proc NatlAcad Sci USA 100 8325ndash8330 (doi101073pnas

                  0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

                  S J 2003 Placental mammal diversification and theCretaceousndashTertiary boundary Proc Natl Acad SciUSA 100 1056ndash1061 (doi101073pnas0334222

                  100)11 Delsuc F Vizcaıno S F amp Douzery E J P 2004

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                  Phil Trans R Soc B (2011)

                  12 Eick G N Jacobs D S amp Matthee C A 2005 Anuclear DNA phylogenetic perspective on the evolutionof echolocation and historical biogeography of extant

                  bats (Chiroptera) Mol Biol Evol 22 1869ndash1886(doi101093molbevmsi180)

                  13 Teeling E C Springer M S Madsen O Bates POrsquoBrien S J amp Murphy W J 2005 A molecular phy-logeny for bats illuminates biogeography and the fossil

                  record Science 307 580ndash584 (doi101126science1105113)

                  14 Huchon D Chevret P Jordan U Kilpatrick C WRanwez V Jenkins P D Brosius J amp Schmitz J

                  2007 Multiple molecular evidences for a living mamma-lian fossil Proc Natl Acad Sci USA 104 7495ndash7499(doi101073pnas0701289104)

                  15 Janecka J E Miller W Pringle T H Wiens FZitzmann A Helgen K M Springer M S amp

                  Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

                  16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

                  the root of the placental mammal tree Genome Res 17413ndash421 (doi101101gr5918807)

                  17 Beck R M 2008 A dated phylogeny of marsupialsusing a molecular supermatrix and multiple fossil con-straints J Mammal 89 175ndash189 (doi10164406-

                  MAMM-A-4371)18 Meredith R W Westerman M amp Springer M S

                  2008 A timescale and phylogeny for lsquobandicootsrsquo (Pera-melemorphia Marsupialia) based on sequences for five

                  nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

                  19 Meredith R W Westerman M amp Springer M S2008 Phylogeny and timescale for the living genera ofkangaroos and kin (Macropodiformes Marsupialia)

                  based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

                  20 Meredith R W Westerman M amp Springer M S 2009A phylogeny of Diprotodontia (Marsupialia) based onsequences for five nuclear genes Mol Phylogenet Evol51 554ndash571 (doi101016jympev200902009)

                  21 Meredith R W Krajewski C Westerman W ampSpringer M S 2009 Relationships and divergencetimes among the orders and families of marsupialsMus N Ariz Bull 65 383ndash406

                  22 Chatterjee H J Ho S W Y Barnes I amp Groves C2009 Estimating the phylogeny and divergence times ofprimates using a supermatrix approach BMC EvolBiol 9 259 (doi1011861471-2148-9-259)

                  23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

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                  estimating divergence times in the absence of rate con-stancy Mol Biol Evol 14 1218ndash1231

                  25 Sanderson M J 2002 Estimating absolute rates of mol-

                  ecular evolution and divergence times a penalizedlikelihood approach Mol Biol Evol 19 101ndash109

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                  27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

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                  28 Battistuzzi F U Filipski A Hedges S B amp KumarS 2010 Performance of relaxed-clock methods in esti-mating evolutionary divergence times and their

                  credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

                  29 Brown R P amp Yang Z 2010 Bayesian dating of shal-low phylogenies with a relaxed molecular clock SystBiol 59 119ndash131 (doi101093sysbiosyp082)

                  30 Inoue J Donoghue P C J amp Yang Z 2010 Theimpact of the representation of fossil calibrations onBayesian estimation of species divergence times SystBiol 59 74ndash89 (doi101093sysbiosyp078)

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                  32 Simpson G G 1965 The geography of evolution collectedessays PhiladelphiaNew York PANY Chilton Books

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                  34 Wen J Xiang Q-Y Qian H Li J Want X-W amp

                  Ickert-Bond S M Intercontinental and intracontinen-tal biogeographymdashpatterns and methods J Syst Evol4 327ndash329

                  35 Nylander J A A Olsson U Alstrom P amp Sanmar-tın I 2008 Accounting for phylogenetic uncertainty

                  in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

                  36 Ree R H Moore B R Webb C O amp Donoghue

                  M J 2005 A likelihood framework for inferring theevolution of geographic range on phylogenetic treesEvolution 59 2299ndash2311

                  37 Ree R H amp Smith S A 2008 Maximum likelihoodinference of geographic range evolution by dispersal

                  local extinction and cladogenesis Syst Biol 57 4ndash14 (doi10108010635150701883881)

                  38 Hardy C R amp Linder H P 2005 Intraspecific varia-bility and timing in ancestral ecology reconstruction atest case from the Cape flora Syst Biol 54 299ndash316

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                  version 3 analysis of phylogeny and character evolutionSunderland MA Sinauer Associates

                  40 Clark J R Ree R H Alfaro M E King M G

                  Wagner W L amp Roalson E H 2008 A comparativestudy in ancestral range reconstruction methodsretracing the uncertain histories of insular lineagesSyst Biol 57 693ndash707 (doi101080106351508

                  02426473)41 Patterson C 1982 Morphological characters and hom-

                  ology In Problems of phylogenetic reconstruction (eds K AJoysey amp A E Friday) pp 21ndash74 London UK Aca-demic Press

                  42 Ree R H amp Sanmartın I 2009 Prospects and chal-lenges for parametric models in historicalbiogeographical inference J Biogeogr 36 1211ndash1220(doi101111j1365-2699200802068x)

                  43 Lamm K S amp Redelings B D 2009 Reconstructing

                  ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

                  44 Maddison W P amp Maddison D R 2009 Mesquite amodular system for evolutionary analysis version 272See httpmesquiteprojectorg

                  45 Wojcicki M amp Brooks D R 2005 PACT an efficientand powerful algorithm for generating area cladogramsJ Biogeogr 32 755ndash774 (doi101111j1365-2699200401148x)

                  Phil Trans R Soc B (2011)

                  46 Lim B K 2008 Historical biogeography of New Worldemballonurid bats (Tribe Diclidurini) taxon pulsediversification J Biogeogr 35 1385ndash1401 (doi10

                  1111j1365-2699200801888x)47 Lim B K 2009 Review of the origins and biogeogra-

                  phy of bats in South America Chiroptera Neotropical15 391ndash410

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                  grative historical biogeography J Int Comp Biol 43261ndash270 (doi101093icb432261)

                  49 Krause D W OrsquoConnor P M Rogers K C Samp-son S D Buckley G A amp Rogers R R 2006 Late

                  Cretaceous terrestrial vertebrates from Madagascarimplications for Latin American biogeography AnnMo Bot Gard 93 178ndash208 (doi1034170026-6493(2006)93[178LCTVFM]20CO2)

                  50 Sereno P C Wilson J A amp Conrad J L 2004 New

                  dinosaurs link southern landmasses in the Mid-Cretac-eous Proc R Soc Lond B 271 1325ndash1330 (doi101098rspb20042692)

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                  356121a0)52 Novacek M J 1993 Reflections on higher mammalian

                  phylogenetics J Mamm Evol 1 1064ndash755453 Springer M S Cleven G C Madsen O de Jong

                  W W Waddell V G Amrine H M amp Stanhope

                  M J 1997 Endemic African mammals shake the phylo-genetic tree Nature 388 61ndash64 (doi10103840386)

                  54 Springer M S Murphy W J Eizirik E amp OrsquoBrienS J 2005 Molecular evidence for major placental

                  clades In The rise of placental mammals origins andrelationships of the major extant clades (eds K D Roseamp J D Archibald) pp 37ndash49 Baltimore MD JohnsHopkins University Press

                  55 Stanhope M J Madsen O Waddell V G Cleven

                  G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

                  56 Stanhope M J Waddell V G Madsen O de Jong

                  W W Hedges S B Cleven G C Kao D ampSpringer M S 1998 Molecular evidence for multipleorigins of Insectivora and for a new order of endemicAfrican insectivore mammals Proc Natl Acad SciUSA 95 9967ndash9972 (doi101073pnas95179967)

                  57 Waddell P Okada N amp Hasegawa M 1999 Towardsresolving the interordinal relationships of placentalmammals Syst Biol 48 1ndash5 (doi101093sysbio4811)

                  58 Waddell P J Kishino H amp Ota R 2001 A phyloge-netic foundation for comparative mammaliangenomics Genome Inform 12 141ndash154

                  59 Eizirik E Murphy W J amp OrsquoBrien S J 2001 Mol-ecular dating and biogeography of the early placental

                  mammal radiation J Hered 92 212ndash219 (doi101093jhered922212)

                  60 Madsen O et al 2001 Parallel adaptive radiations intwo major clades of placental mammals Nature 409610ndash614 (doi10103835054544)

                  61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

                  62 Murphy W J et al 2001 Resolution of the early placen-

                  tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

                  63 Scally M Madsen O Douady C J de Jong W WStanhope M J amp Springer M S 2001 Molecular

                  2498 M S Springer et al Mammalian historical biogeography

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                  evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

                  64 Springer M S amp de Jong W W 2001 Which mamma-lian supertree to bark up Science 291 1709ndash1711

                  65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

                  (doi101093bioinformaticsbtl446)66 Benton M J amp Donoghue P C J 2007 Paleontologi-

                  cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

                  67 Reisz R R amp Muller J 2004 Molecular timescales andthe fossil record a paleontological perspective TrendsGenet 20 237ndash241 (doi101016jtig200403007)

                  68 Muller J amp Reisz R R 2005 Four well-constrainedcalibration points from the vertebrate fossil record for

                  molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

                  69 Gradstein F M amp Ogg J G 2009 The geologic timescale In The timetree of life (eds S B Hedges amp SKumar) pp 26ndash34 Oxford UK Oxford University Press

                  70 Gheerbrant E 2009 Paleocene emergence of elephantrelatives and the rapid radiation of African ungulatesProc Natl Acad Sci USA 106 10717ndash10721(doi101073pnas0900251106)

                  71 Bergqvist L P Abrantes E A L amp Avilla L D S

                  2004 The Xenarthra (Mammalia) of Sao Jose de Ita-boraı Basin (upper Paleocene Itaboraian) Rio deJaneiro Brazil Geodiversitas 26 323ndash337

                  72 Carlini A A Pascual R Reguero M A Scillato-

                  Yane G J Tonni E P amp Vizcaıno S F 1990 Thefirst Paleogene land placental mammal from Antarcticaits paleoclimatic and paleobiogeographical bearings InAbstracts IV International Congress of Systematic and Evol-utionary Biology (eds B Cox amp J Reveal) 325 p

                  Baltimore MD University of Maryland73 Vizcaıno S F amp Scillato-Yane G J 1995 An Eocene

                  Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

                  74 Benton M J Donoghue P C J amp Asher R J 2009

                  Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

                  75 Flynn J J 1996 Carnivoran phylogeny and rates ofevolution morphological taxonomic and molecular

                  In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

                  76 Hunt Jr R M amp Tedford R H 1993 Phylogenetic

                  relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

                  77 Wesley-Hunt G D amp Flynn J J 2005 Phylogeny ofthe Carnivora basal relationships among the carnivora-morphans and assessment of the position oflsquoMiacoidearsquo relative to Carnivora J Syst Palaeontol 31ndash28 (doi101017S1477201904001518)

                  78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

                  79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

                  Phil Trans R Soc B (2011)

                  80 Storch G amp Seiffert C 2007 Extraordinarily preservedspecimen of the oldest known glirid from the middleEocene of Messel (Rodentia) J Vertebr Paleontol 27

                  189ndash194 (doi1016710272-4634(2007)27[189EPSOTO]20CO2)

                  81 Sallam H M Seiffert E R Steiper M E amp SimonsE L 2009 Fossil and molecular evidence constrainscenarios for the early evolutionary and biogeographic

                  history of hystricognathous rodents Proc Natl AcadSci USA 106 16 722ndash16 727 (doi101073pnas0908702106)

                  82 Hartenberger L 1998 Description of the radiation of

                  the Rodentia (Mammalia) from the Late Paleocene tothe Miocene phylogenetic consequences C R AcadSci II A 326 439ndash444

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                  American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

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                  The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

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                  E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

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                  other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

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                  Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

                  2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

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                  eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

                  136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

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                  W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

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                  N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

                  139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

                  Phil Trans R Soc B (2011)

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                  0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

                  roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

                  of mammals Proc Natl Acad Sci USA 106 5235ndash5240

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                  144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

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                  dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

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                  108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

                  dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                  37091305110239)150 McCall R 1997 Implications of recent geological

                  investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

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                  caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

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                  Mammalian historical biogeography M S Springer et al 2501

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                  revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

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                  and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

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                  Wyoming and the evolution of flight and echolocationNature 451 818ndash822

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                  paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

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                  ian evolution Science 302 1934ndash1939 (doi101126science1090718)

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                  Phil Trans R Soc B (2011)

                  dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

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                  from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                  175 Cifelli R L 1993 Theria of metatherianndasheutherian

                  grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

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                  bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

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                  pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

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                  of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                  180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                  2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                  181 Beck R M Godthelp H Weisbecker V Archer M

                  amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

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                  Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

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                  for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                  184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                  implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                  185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                  phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                  186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                  marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

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                  2502 M S Springer et al Mammalian historical biogeography

                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                  mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                  188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                  189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                  190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                  Phil Trans R Soc B (2011)

                  Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                  191 Springer M S amp Krajewski C 2009 Monotremes

                  (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                  192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                  53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                  In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                  194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                  • The historical biogeography of Mammalia
                    • Introduction
                    • Phylogeny reconstruction
                    • Molecular dating analyses
                    • Ancestral area reconstruction
                    • Box 1
                    • Ancestral area chronograms and palaeogeography
                    • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                    • Placental biogeography
                    • The importance of dispersal
                    • Bat biogeography
                    • Marsupial biogeography
                    • Monotreme biogeography
                    • Conclusions
                    • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
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                    80

                    Paleoc

                    100

                    OligEoceneCretaceousMesozoic

                    Choloepus

                    Tamandua

                    MyrmecophagaEuphractus

                    Chaetophractus

                    Erinaceus

                    Talpa

                    Sorex

                    Echinops

                    Amblysomus

                    Procavia

                    Loxodonta

                    MacroscelidesElephantulus

                    Orycteropus

                    Tamias

                    Muscardinus

                    Mus

                    Rattus

                    PedetesHystrix

                    Castor

                    Dipodomys

                    CaviaHydrochaeris

                    Erethizon

                    SylvilagusOchotona

                    Cynocephalus

                    TupaiaLemur

                    Homo

                    Tarsius

                    Hippopotamus

                    Lama

                    Tragelaphus

                    Sus

                    Equus

                    Ceratotherium

                    TapirusFelis

                    Canis

                    Manis

                    Africa

                    South America

                    Eurasia

                    North America

                    Africa + EurasiaAfrica + North AmericaEurasia + North America

                    1

                    23

                    4

                    56

                    7

                    16

                    17

                    1819

                    20

                    2122

                    23

                    12

                    13

                    14

                    15

                    8

                    9

                    1011

                    31

                    32

                    33

                    34

                    35

                    36

                    3738

                    28

                    2930

                    2425

                    26

                    27

                    4239

                    41

                    40

                    Figure 4 Ancestral area chronogram for 43 placental taxa from Springer et al [3] with area coding based on the oldest fossil foreach lineage RAxML was used to infer phylogenetic relationships BEAST was used to infer divergence times and MAC par-simony was used to infer ancestral areas with the step matrix in figure 2 Areas for the oldest fossil lineage are enumerated intable 2 and are colour-coded as follows Africa blue Eurasia green North America brown South America red Nodes with

                    unambiguous ancestral area reconstructions are shown with a single coloured circle nodes with ambiguous reconstructions areshown with two or more circles and each coloured circle corresponds to a different reconstruction

                    2486 M S Springer et al Mammalian historical biogeography

                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

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                    s26

                    0100

                    0100

                    0100

                    0100

                    0100

                    00

                    0

                    08

                    6

                    00

                    0

                    00

                    000

                    0

                    09

                    2

                    00

                    0

                    00

                    000

                    0

                    09

                    1

                    00

                    0

                    00

                    000

                    0

                    10

                    0

                    00

                    0

                    00

                    0E

                    uarc

                    hon

                    ta27

                    0100

                    0100

                    0100

                    0100

                    0100

                    00

                    0

                    09

                    9

                    00

                    0

                    00

                    000

                    0

                    09

                    9

                    00

                    0

                    00

                    000

                    0

                    10

                    0

                    00

                    0

                    00

                    000

                    0

                    10

                    0

                    00

                    0

                    00

                    0P

                    ara

                    pri

                    mat

                    es28

                    0100

                    0100

                    0100

                    0100

                    0100

                    00

                    0

                    10

                    0

                    00

                    0

                    00

                    000

                    0

                    10

                    0

                    00

                    0

                    00

                    000

                    0

                    10

                    0

                    00

                    0

                    00

                    000

                    0

                    10

                    0

                    00

                    0

                    00

                    0P

                    rim

                    ate

                    s29

                    0100

                    0100

                    0100

                    0100

                    0100

                    00

                    0

                    09

                    4

                    00

                    0

                    00

                    000

                    0

                    09

                    5

                    00

                    0

                    00

                    000

                    1

                    09

                    9

                    00

                    0

                    00

                    000

                    0

                    09

                    9

                    00

                    0

                    00

                    0

                    Pro

                    sim

                    ii30

                    0100

                    0100

                    0100

                    1100

                    1100

                    04

                    6

                    09

                    3

                    00

                    0

                    00

                    002

                    8

                    09

                    0

                    00

                    0

                    00

                    003

                    0

                    07

                    0

                    00

                    0

                    00

                    003

                    0

                    06

                    8

                    00

                    1

                    00

                    1G

                    lire

                    s31

                    0100

                    0100

                    0100

                    0100

                    0100

                    00

                    0

                    07

                    4

                    00

                    0

                    00

                    000

                    0

                    08

                    9

                    00

                    0

                    00

                    000

                    0

                    08

                    1

                    00

                    0

                    00

                    000

                    0

                    09

                    9

                    00

                    1

                    00

                    0L

                    agom

                    orp

                    ha

                    32

                    0100

                    0100

                    0100

                    0100

                    0100

                    00

                    0

                    10

                    0

                    00

                    0

                    00

                    000

                    0

                    09

                    9

                    00

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                    00

                    000

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                    09

                    8

                    00

                    0

                    00

                    000

                    1

                    09

                    8

                    00

                    1

                    00

                    0R

                    od

                    enti

                    a33

                    0(0

                    1)0

                    00100

                    0100

                    0100

                    0100

                    04

                    1

                    08

                    0

                    02

                    5

                    00

                    003

                    0

                    09

                    0

                    00

                    9

                    00

                    000

                    0

                    00

                    0

                    00

                    3

                    00

                    000

                    5

                    02

                    3

                    07

                    1

                    00

                    21100

                    1100

                    1110

                    squ

                    irre

                    l-re

                    late

                    dcl

                    ad

                    e34

                    0(0

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                    00100

                    0100

                    0110

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                    00

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                    08

                    4

                    05

                    5

                    00

                    000

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                    03

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                    3

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                    000

                    2

                    01

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                    08

                    1

                    00

                    1m

                    ou

                    se-r

                    elat

                    edcl

                    ad

                    ethorn

                    35

                    0000

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                    03

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                    00

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                    9

                    00

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                    07

                    1

                    00

                    6H

                    ystr

                    icogn

                    ath

                    i1000

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                    tric

                    ogn

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                    i36

                    0000

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                    08

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                    00

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                    602

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                    0001

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                    Cav

                    iom

                    orp

                    ha

                    37

                    0001

                    0001

                    0001

                    0001

                    0001

                    00

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                    700

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                    00

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                    00

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                    00

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                    avio

                    idea

                    38

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                    900

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                    0

                    00

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                    se-r

                    elat

                    edcl

                    ad

                    e39

                    0000

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                    07

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                    41

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                    00

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                    00

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                    uri

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                    0100

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                    Cast

                    ori

                    morp

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                    40

                    0010

                    0010

                    0010

                    0010

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                    00

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                    00

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                    00

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                    uri

                    dae

                    42

                    0100

                    0100

                    0100

                    0100

                    0100

                    00

                    0

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                    7

                    00

                    0

                    00

                    000

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                    4

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                    8

                    00

                    1

                    00

                    0

                    2490 M S Springer et al Mammalian historical biogeography

                    Phil Trans R Soc B (2011)

                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                    Table 5 Comparison of different methods for reconstructing ancestral areas NA1 not applicable for monomorphic

                    reconstruction methods NA2 not applicable when the maximum number of areas is set at two NA2 not applicable formethods that employ single multistate charactersa

                    FP-MBC FP-SMCMACParsimony DIVA DIVA-2 DEC DEC-2 SM-MBC SM-SMC

                    nodes with ambiguous 75 129 128 1211 107 2323 2623 1617 614reconstructionsb 1920 1718 1012 410

                    nodes with 2 areasc 33 NA1 46 1618 1516 1820 2019 77 NA11720 1717 46

                    nodes with 3 areasd 00 NA1 00 65 NA2 66 NA2 00 NA145 00

                    empty nodese 95 NA3 NA3 NA3 NA3 NA3 NA3 34 NA344

                    aNumbers before slashes are based on analyses with area coding for extant taxa and numbers after slashes are based on analyses with areacoding for the oldest fossil See table 3 for abbreviationsbFor FP-MBC nodes were considered ambiguous if at least one area was reconstructed as (01) For SM-MBC and SM-SMC nodes wereconsidered ambiguous if the posterior probability (PP) of at least one area was 01 PP 09 (top line) or 02 PP 08 (bottom line)For DEC and DEC-2 nodes were considered ambiguous if the frequency ( f ) of at least one area was 01 f 09 (top line) or 02 p 08 (bottom line)cAt least two areas in at least one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) was takento include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line) or020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02 (bottomline)dAt least three areas in more than one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) wastaken to include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line)or 020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02(bottom line)eFor FP-MBC nodes were considered empty if all areas were reconstructed as 0 For SM-MBC nodes were considered empty if posteriorprobabilities were 010 (top line) or 020 (bottom line) for all four areas

                    Mammalian historical biogeography M S Springer et al 2491

                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                    Eurasia throughout the Cretaceous but were absentfrom North America through much of the Late Cre-taceous and only attained appreciable diversity thereduring the last approximately 10 Myr of the period[133134] Boyer et al [135] concluded that theIndian subcontinent Eurasia and Africa are morelikely places of origin for Euarchonta than is NorthAmerica This agrees with our ancestral areareconstructions (figures 3 4 and tables 3 4)

                    Although there is robust support for the monophylyof Xenarthra Afrotheria and Boreoeutheria relation-ships among these three groups and the root of theplacental tree remain contentious [105460ndash63136]Murphy et al [62] and Springer et al [10] suggested acausal relationship between the sundering of Africa andSouth America and basal cladogenesis among crown-group placental mammals given the coincidence ofmolecular dates for the base of placentals and thevicariant separation of Africa and South Americaapproximately 100ndash120 Ma

                    Asher et al [125] analysed a combined matrix andrecovered Afrotheria in a nested position within Pla-centalia which contradicts the hypothesis that theplate tectonic separation of Africa and South Americaplayed a causal role in the early cladogenesis of placen-tal mammals However the nested position forAfrotheria resulted from the paraphyly of Euarchonto-glires Glires and Rodentia Rare genomic changesconfirm the monophyly of Xenarthra [137] Afrotheria[138ndash142] Euarchontoglires [139141142] Laura-siatheria [139141142] and Boreoeutheria[139141142] and preclude a nested position forAfrotheria in the placental tree

                    Rare genomic changes have also been used toexamine the position of the placental root Kriegs

                    Phil Trans R Soc B (2011)

                    et al [139] reported LINE insertions that are sharedby Epitheria whereas Murphy et al [16] discoveredrare genomic changes that support AtlantogenataNishihara et al [142] performed genome-wide retro-poson analyses and found 22 25 and 21 LINEinsertions for Exafroplacentalia Epitheria and Atlan-togenata respectively Based on these resultsNishihara et al [142] concluded that XenarthraAfrotheria and Boreoeutheria diverged from oneanother nearly simultaneously They also suggested anew palaeogeographical model for the breakup of Pan-gaea and Gondwana in which Africa becomes isolatedfrom both South America and Laurasia at approxi-mately 120 Ma and argued that these coeval platetectonic events provide an explanation for the simul-taneous divergence of Afrotheria Xenarthra andBoreoeutheria However relaxed clock dates for thebase of Placentalia are closer to 100 Ma than to120 Ma (figures 3 and 4) A second difficulty concernsthe opening of the South Atlantic Nishihara et al[142] suggested that the Brazilian Bridge which rep-resented the last connection between Africa andSouth America was severed at approximately120 Mya but other recent reconstructions suggestthat the connection between the South Atlantic andCentral Atlantic was not established until lateAptianmid-Albian times (approx 110ndash100 Ma)[143144]

                    8 THE IMPORTANCE OF DISPERSALIn the context of pre-plate tectonic views of theEarth Simpson [2] proposed three types ofmigration routes to describe the movement of ani-mals corridors filter bridges and sweepstakes

                    Africa

                    Mad

                    agas

                    car

                    Tanzania

                    Mozambique

                    N

                    100 mi

                    Figure 5 Present day surface ocean currents in the Mozam-bique Channel (solid arrows) are southndashsouthwest andwould not have facilitated west to east transoceanic dispersalfrom Africa to Madagascar [153] By contrast westerly sur-face ocean currents in the Eocene (dashed arrows) would

                    have facilitated dispersal across the Mozambique Channelfrom Africa to Madagascar especially during tropicalstorms [154] The outline of Madagascar with dashed linesshows its approximate position relative to Africa during theEocene

                    2492 M S Springer et al Mammalian historical biogeography

                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                    dispersal Corridors connect two areas and are per-meable to all animals filter bridges impose selectivebarriers that affect some but not all animals andsweepstakes dispersal is required when there arestrong barriers to migration such as high mountainbarriers or oceans

                    Simpson [2] suggested that Madagascarrsquos livingmammals were the product of sweepstakes dispersalfrom Africa to Madagascar Sweepstakes dispersalhypotheses fell out of favour with the validation ofplate tectonic theory and were summarily dismissedas lsquomiraculousrsquo hypotheses with no scientific basis[145] However it has become apparent that some dis-tributional patterns can only be explained bysweepstakes dispersal [146] Observational data alsoprovide support for long-distance vertebrate dispersal[147] Examples of low probability sweepstakes disper-sal involving mammals include the origins of theendemic mammal fauna in Madagascar and theoccurrence of caviomorph rodents and platyrrhine pri-mates in South America

                    Madagascarrsquos strictly terrestrial extant mammal faunaincludes endemic lineages from four placental orderstenrecs (Afrosoricida) euplerids (Carnivora) neso-myines (Rodentia) and lemurs (Primates) In eachlineage Madagascar endemics comprise monophyleticassemblages with closest living relatives in Africa[148149] Madagascar separated from Africa approxi-mately 165 Ma but maintained its connection withAntarctica via the Kerguelen Plateau until as late as80 Ma at which time it became permanentlyseparated from other Gondwanan landmasses This his-tory suggests that Madagascarrsquos terrestrial endemicmammals are either the ancient descendants of vicariantevents that occurred prior to 80 Ma or reached Mada-gascar via transoceanic sweepstakes dispersal at a latertime Another possibility is that a land bridge connectedAfrica and Madagascar between 45 and 26 Ma [150]

                    Molecular divergence dates suggest that all fourendemic lineages last shared a common ancestorwith their African sister group in the Cenozoic[148149151152] Poux et al [148] concluded thatdispersal by lemurs rodents and carnivorans musthave occurred by transoceanic dispersal rather thanland bridge dispersal based on molecular dates forthe colonization of Madagascar that were outside ofthe land bridge window ie 60ndash50 Ma for lemurs26ndash19 Ma for carnivorans and 24ndash20 Ma for rodentsHowever present ocean currents allow for dispersalfrom Madagascar to Africa but oppose reciprocal dis-persal from Africa to Madagascar across theMozambique Channel If ocean currents were thesame for most of the Cenozoic as they are todaythey would not have facilitated west to east transocea-nic dispersal across the Mozambique Channel becauseof the strong southndashsouthwest flow of the Mozambi-que Current [153]

                    Ali amp Huber [154] addressed this problem by simu-lating surface ocean currents in the Indian Oceanduring the Eocene They concluded that large-scaleocean current systems in the Eocene were profoundlydifferent from modern observed circulatory patternsand that the flow along the African coast was eastwardtowards Madagascar instead of southward through the

                    Phil Trans R Soc B (2011)

                    Mozambique Channel (figure 5) Ali amp Huber [154]further suggested that dispersal probabilities wereenhanced by tropical storms that (i) generated largefloating tree islands that would have allowed for asuccessful oceanic voyage and (ii) acceleratedtransportation rates from Africa to Madagascar thatwould have allowed for complete crossing of theMozambique Channel in 25ndash30 days

                    The dispersal of four groups of fully terrestrialmammals from Africa to Madagascar at a time whenthere was no land bridge is a testament to the impor-tance of rare sweepstakes events in the evolutionaryhistory of Placentalia Even more remarkable is theoccurrence of two different groups of placental mam-mals hystricognath rodents and anthropoid primatesin Africa and South America

                    Hystricognathi includes Hystricidae (Old World por-cupines) and Phiomorpha (eg cane rats dassie rats)from the Old World and Caviomorpha (eg porcupineschinchillas) from the New World The oldest hystricog-naths are from the late Eocene Egypt and have beendated at approximately 37 Ma [81] Old World hystri-cognaths are paraphyletic usually with phiomorphshaving closer phylogenetic affinities to South Americancaviomorphs than to hystricids [14155156] Relaxedclock dates suggest that South American caviomorphslast shared a common ancestor with phiomorphsbetween 45 and 36 Ma [81155157] The most recentcommon ancestor of Caviomorpha has been dated at45ndash31 Ma [81155157158]

                    PacificOcean

                    NorthAtlanticOcean

                    SouthAtlantic Ocean

                    IndianOcean

                    NorthAmerica

                    SouthAmerica

                    Africa

                    Antarctica

                    Australia

                    Asia

                    Europe

                    PacificOcean1b

                    1b

                    1a3

                    2

                    Middle Eocene

                    Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

                    South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

                    Mammalian historical biogeography M S Springer et al 2493

                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                    Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

                    The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

                    Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

                    Phil Trans R Soc B (2011)

                    phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

                    9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

                    The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

                    Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

                    or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

                    node number (figure 7) Eick et al [12] re-analysis

                    1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

                    ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

                    3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

                    4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

                    9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

                    10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

                    11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

                    12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

                    ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

                    13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

                    ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

                    BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

                    14 A A B C AC BC ABC15 A A B C AC BC

                    16 A A B C17 A A B AC BC ABC

                    2494 M S Springer et al Mammalian historical biogeography

                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                    and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

                    We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

                    Phil Trans R Soc B (2011)

                    Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

                    FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

                    1

                    2

                    3

                    4

                    56

                    7

                    8

                    9

                    10

                    11

                    1213

                    14

                    1516

                    17

                    EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

                    Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

                    Mammalian historical biogeography M S Springer et al 2495

                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                    with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

                    10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

                    In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

                    Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

                    Phil Trans R Soc B (2011)

                    sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

                    In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

                    11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

                    In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

                    With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

                    12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

                    2496 M S Springer et al Mammalian historical biogeography

                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                    together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

                    MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

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                    Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

                    4 Springer M S Meredith R W Eizirik E Teeling

                    E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

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                    0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

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                    15 Janecka J E Miller W Pringle T H Wiens FZitzmann A Helgen K M Springer M S amp

                    Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

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                    the root of the placental mammal tree Genome Res 17413ndash421 (doi101101gr5918807)

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                    nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

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                    23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

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                    ecular evolution and divergence times a penalizedlikelihood approach Mol Biol Evol 19 101ndash109

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                    27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

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                    credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

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                    34 Wen J Xiang Q-Y Qian H Li J Want X-W amp

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                    in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

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                    43 Lamm K S amp Redelings B D 2009 Reconstructing

                    ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

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                    Phil Trans R Soc B (2011)

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                    W W Waddell V G Amrine H M amp Stanhope

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                    54 Springer M S Murphy W J Eizirik E amp OrsquoBrienS J 2005 Molecular evidence for major placental

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                    55 Stanhope M J Madsen O Waddell V G Cleven

                    G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

                    56 Stanhope M J Waddell V G Madsen O de Jong

                    W W Hedges S B Cleven G C Kao D ampSpringer M S 1998 Molecular evidence for multipleorigins of Insectivora and for a new order of endemicAfrican insectivore mammals Proc Natl Acad SciUSA 95 9967ndash9972 (doi101073pnas95179967)

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                    tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

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                    evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

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                    65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

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                    cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

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                    molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

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                    Yane G J Tonni E P amp Vizcaıno S F 1990 Thefirst Paleogene land placental mammal from Antarcticaits paleoclimatic and paleobiogeographical bearings InAbstracts IV International Congress of Systematic and Evol-utionary Biology (eds B Cox amp J Reveal) 325 p

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                    Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

                    74 Benton M J Donoghue P C J amp Asher R J 2009

                    Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

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                    In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

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                    relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

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                    78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

                    79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

                    Phil Trans R Soc B (2011)

                    80 Storch G amp Seiffert C 2007 Extraordinarily preservedspecimen of the oldest known glirid from the middleEocene of Messel (Rodentia) J Vertebr Paleontol 27

                    189ndash194 (doi1016710272-4634(2007)27[189EPSOTO]20CO2)

                    81 Sallam H M Seiffert E R Steiper M E amp SimonsE L 2009 Fossil and molecular evidence constrainscenarios for the early evolutionary and biogeographic

                    history of hystricognathous rodents Proc Natl AcadSci USA 106 16 722ndash16 727 (doi101073pnas0908702106)

                    82 Hartenberger L 1998 Description of the radiation of

                    the Rodentia (Mammalia) from the Late Paleocene tothe Miocene phylogenetic consequences C R AcadSci II A 326 439ndash444

                    83 Vucetich M G Verzi D H amp Hartenberger L 1999Review and analysis of the radiation of the South

                    American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

                    84 Flynn L J amp Jacobs L L 2008 Castoridea In Evolution oftertiary mammals of North America small mammals xenar-thrans and marine mammals (eds C M Janis G F

                    Gunnell amp M D Uhen) vol 2 pp 391ndash405 CambridgeUK Cambridge University Press

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                    implications Antarctic Sci 6 3ndash15 (doi101017S0954102094000027)

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                    Xenarthra Mammalia) from La Meseta FormationSeymour Island West Antarctica Am Mus Novit3689 1ndash21 (doi1012067031)

                    87 McKenna M C amp Bell S K 1997 Classification ofmammals above the species level New York NY Colum-

                    bia University Press88 Gaudin T J amp Branham D G 1998 The phylogeny of

                    the Myrmecophagidae (Mammalia Xenarthra Vermi-lingua) and relationship of Eurotamandua to theVermilingua J Mamm Evol 5 237ndash265 (doi10

                    1023A1020512529767)89 Galliari F C Carlini A A amp Sanchez-Villagra M R

                    2010 Evolution of the axial skeleton in armadillos(Mammalia Dasypodidae) Mamm Biol 75 326ndash333 (doi101016jmambio200903014)

                    90 Poljak S Confalonieri V Fasanella M Gabrielli Mamp Lizarralde M S 2010 Phylogeography of the arma-dillo Chaetophractus villosus (Dasypodidae Xenarthra)post-glacial range expansion from Pampas to Patagonia

                    (Argentina) Mol Phylogenet Evol 55 38ndash46 (doi101016jympev200912021)

                    91 Sige B Crochet J-Y amp Insole A 1977 Les plusvielles taupes Geobios Mem Spec 1 141ndash157(doi101016S0016-6995(77)80014-4)

                    92 Gunnell G F Bown T M Hutchinson J H ampBloch J I 2008 Lipotyphla In Evolution of Tertiarymammals of North America small mammals xenarthransand marine mammals vol 2 (eds C M Janis G FGunnell amp M D Uhen) pp 89ndash125 Cambridge

                    UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

                    amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

                    94 Tabuce R Asher R J amp Lehmann T 2008 Afrother-ian mammals a review of current data Mammalia 722ndash14 (doi101515MAMM2008004)

                    Mammalian historical biogeography M S Springer et al 2499

                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

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                    96 Milledge S 2003 Fossil aardvarks from the Lothagam

                    beds In Lothagam the dawn of humanity in EasternAfrica (eds J Leakey amp J Harris) pp 363ndash368New York NY Columbia University Press

                    97 Flynn L J amp Jacobs L L 2008 Aplodontia In Evol-ution of tertiary mammals of North America smallmammals xenarthrans and marine mammals vol 2(eds C M Janis G F Gunnell amp M D Uhen) pp377ndash390 Cambridge UK Cambridge UniversityPress

                    98 Marivaux L Ducrocq S Jaeger J-J Marandat BSudre J Chaimanee Y Tun S T Htoon W ampSoe A N 2005 New remains of Pondaungimysanomaluropsis (Rodentia Anomaluroidea) from thelatest middle Eocene Pondaung Formation of

                    Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

                    99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

                    100 Antoine P-O et al 2007 The middle Miocene (Laven-

                    tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

                    Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

                    Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

                    (doi1016710272-4634(2007)27[683OADOTO]20CO2)

                    102 Frailey C D amp Campbell K E 2004 The rodents ofthe Santa Rosa Local Fauna In The Paleogene mamma-lian fauna of Santa Rosa Amazonian Peru (ed K E

                    Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

                    103 Martin T 2004 Evolution of incisor enamel micro-structure in Lagomorpha J Vertebr Paleontol 24

                    411ndash426 (doi1016712513)104 Lopez-Martinez N 2008 The lagomorph fossil

                    record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

                    105 Marivaux L Bocat L Chaimanee Y Jaeger J-JMarandat B Srisuk P Tafforeau P Yamee C ampWelcomme L 2006 Cynocephalid dermopterans

                    from the Palaeogene of South Asia (Thailand Myan-mar and Pakistan) systematic evolutionary andpalaeobiogeographic implications Zool Scripta 35395ndash420 (doi101111j1463-6409200600235x)

                    106 Tong Y 1988 Fossil tree shrews from the Eocene

                    Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

                    107 Godfrey L R amp Jungers W L 2002 Quaternary fossillemurs In The primate fossil record (ed W C Hartwig)pp 97ndash121 Cambridge UK Cambridge University

                    Press108 Bajpai S Kay R F Williams B A Das D P

                    Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

                    Phil Trans R Soc B (2011)

                    109 Beard K C Qi T Dawson M R Wang B amp Li C1994 A diverse new primate fauna from middle Eocenefissure-fillings in southeastern China Nature 368

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                    F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

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                    112 Metais G amp Vislobokova I 2008 Basal ruminants In

                    The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

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                    E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

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                    ary Science 295 2062ndash2065 (doi101126science1068700)

                    115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

                    earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

                    116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

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                    other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

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                    2500 M S Springer et al Mammalian historical biogeography

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                    132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

                    133 Cifelli R L amp Davis B M 2003 Marsupial origins

                    Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

                    2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

                    135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

                    eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

                    136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

                    pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

                    W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

                    260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

                    N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

                    139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

                    Phil Trans R Soc B (2011)

                    140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

                    141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

                    0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

                    roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

                    of mammals Proc Natl Acad Sci USA 106 5235ndash5240

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                    144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

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                    73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

                    dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

                    148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

                    108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

                    dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                    37091305110239)150 McCall R 1997 Implications of recent geological

                    investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

                    151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

                    152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

                    153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

                    154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

                    155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

                    caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

                    156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

                    Mammalian historical biogeography M S Springer et al 2501

                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                    revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

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                    R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

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                    Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

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                    (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

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                    2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

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                    513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

                    ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

                    AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

                    diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

                    167 Gunnell G F amp Simmons N B 2005 Fossil evidence

                    and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                    168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                    Wyoming and the evolution of flight and echolocationNature 451 818ndash822

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                    paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                    170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

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                    ian evolution Science 302 1934ndash1939 (doi101126science1090718)

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                    Phil Trans R Soc B (2011)

                    dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                    173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

                    D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

                    174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

                    from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                    175 Cifelli R L 1993 Theria of metatherianndasheutherian

                    grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                    176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                    177 Wible J R 1990 Late Cretaceous marsupial petrosal

                    bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                    178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                    pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                    179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                    of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                    180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                    2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                    181 Beck R M Godthelp H Weisbecker V Archer M

                    amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                    182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                    Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                    183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                    for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                    184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                    implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                    185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                    phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                    186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                    marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                    187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                    2502 M S Springer et al Mammalian historical biogeography

                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                    mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                    188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                    189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                    190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                    Phil Trans R Soc B (2011)

                    Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                    191 Springer M S amp Krajewski C 2009 Monotremes

                    (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                    192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                    53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                    In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                    194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                    • The historical biogeography of Mammalia
                      • Introduction
                      • Phylogeny reconstruction
                      • Molecular dating analyses
                      • Ancestral area reconstruction
                      • Box 1
                      • Ancestral area chronograms and palaeogeography
                      • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                      • Placental biogeography
                      • The importance of dispersal
                      • Bat biogeography
                      • Marsupial biogeography
                      • Monotreme biogeography
                      • Conclusions
                      • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
                      • REFERENCES

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                      1

                      09

                      9

                      00

                      0M

                      uri

                      dae

                      42

                      0100

                      0100

                      0100

                      0100

                      0100

                      00

                      0

                      09

                      7

                      00

                      0

                      00

                      000

                      0

                      09

                      4

                      00

                      0

                      00

                      000

                      0

                      09

                      9

                      00

                      1

                      00

                      000

                      0

                      09

                      8

                      00

                      1

                      00

                      0

                      2490 M S Springer et al Mammalian historical biogeography

                      Phil Trans R Soc B (2011)

                      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                      Table 5 Comparison of different methods for reconstructing ancestral areas NA1 not applicable for monomorphic

                      reconstruction methods NA2 not applicable when the maximum number of areas is set at two NA2 not applicable formethods that employ single multistate charactersa

                      FP-MBC FP-SMCMACParsimony DIVA DIVA-2 DEC DEC-2 SM-MBC SM-SMC

                      nodes with ambiguous 75 129 128 1211 107 2323 2623 1617 614reconstructionsb 1920 1718 1012 410

                      nodes with 2 areasc 33 NA1 46 1618 1516 1820 2019 77 NA11720 1717 46

                      nodes with 3 areasd 00 NA1 00 65 NA2 66 NA2 00 NA145 00

                      empty nodese 95 NA3 NA3 NA3 NA3 NA3 NA3 34 NA344

                      aNumbers before slashes are based on analyses with area coding for extant taxa and numbers after slashes are based on analyses with areacoding for the oldest fossil See table 3 for abbreviationsbFor FP-MBC nodes were considered ambiguous if at least one area was reconstructed as (01) For SM-MBC and SM-SMC nodes wereconsidered ambiguous if the posterior probability (PP) of at least one area was 01 PP 09 (top line) or 02 PP 08 (bottom line)For DEC and DEC-2 nodes were considered ambiguous if the frequency ( f ) of at least one area was 01 f 09 (top line) or 02 p 08 (bottom line)cAt least two areas in at least one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) was takento include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line) or020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02 (bottomline)dAt least three areas in more than one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) wastaken to include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line)or 020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02(bottom line)eFor FP-MBC nodes were considered empty if all areas were reconstructed as 0 For SM-MBC nodes were considered empty if posteriorprobabilities were 010 (top line) or 020 (bottom line) for all four areas

                      Mammalian historical biogeography M S Springer et al 2491

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                      Eurasia throughout the Cretaceous but were absentfrom North America through much of the Late Cre-taceous and only attained appreciable diversity thereduring the last approximately 10 Myr of the period[133134] Boyer et al [135] concluded that theIndian subcontinent Eurasia and Africa are morelikely places of origin for Euarchonta than is NorthAmerica This agrees with our ancestral areareconstructions (figures 3 4 and tables 3 4)

                      Although there is robust support for the monophylyof Xenarthra Afrotheria and Boreoeutheria relation-ships among these three groups and the root of theplacental tree remain contentious [105460ndash63136]Murphy et al [62] and Springer et al [10] suggested acausal relationship between the sundering of Africa andSouth America and basal cladogenesis among crown-group placental mammals given the coincidence ofmolecular dates for the base of placentals and thevicariant separation of Africa and South Americaapproximately 100ndash120 Ma

                      Asher et al [125] analysed a combined matrix andrecovered Afrotheria in a nested position within Pla-centalia which contradicts the hypothesis that theplate tectonic separation of Africa and South Americaplayed a causal role in the early cladogenesis of placen-tal mammals However the nested position forAfrotheria resulted from the paraphyly of Euarchonto-glires Glires and Rodentia Rare genomic changesconfirm the monophyly of Xenarthra [137] Afrotheria[138ndash142] Euarchontoglires [139141142] Laura-siatheria [139141142] and Boreoeutheria[139141142] and preclude a nested position forAfrotheria in the placental tree

                      Rare genomic changes have also been used toexamine the position of the placental root Kriegs

                      Phil Trans R Soc B (2011)

                      et al [139] reported LINE insertions that are sharedby Epitheria whereas Murphy et al [16] discoveredrare genomic changes that support AtlantogenataNishihara et al [142] performed genome-wide retro-poson analyses and found 22 25 and 21 LINEinsertions for Exafroplacentalia Epitheria and Atlan-togenata respectively Based on these resultsNishihara et al [142] concluded that XenarthraAfrotheria and Boreoeutheria diverged from oneanother nearly simultaneously They also suggested anew palaeogeographical model for the breakup of Pan-gaea and Gondwana in which Africa becomes isolatedfrom both South America and Laurasia at approxi-mately 120 Ma and argued that these coeval platetectonic events provide an explanation for the simul-taneous divergence of Afrotheria Xenarthra andBoreoeutheria However relaxed clock dates for thebase of Placentalia are closer to 100 Ma than to120 Ma (figures 3 and 4) A second difficulty concernsthe opening of the South Atlantic Nishihara et al[142] suggested that the Brazilian Bridge which rep-resented the last connection between Africa andSouth America was severed at approximately120 Mya but other recent reconstructions suggestthat the connection between the South Atlantic andCentral Atlantic was not established until lateAptianmid-Albian times (approx 110ndash100 Ma)[143144]

                      8 THE IMPORTANCE OF DISPERSALIn the context of pre-plate tectonic views of theEarth Simpson [2] proposed three types ofmigration routes to describe the movement of ani-mals corridors filter bridges and sweepstakes

                      Africa

                      Mad

                      agas

                      car

                      Tanzania

                      Mozambique

                      N

                      100 mi

                      Figure 5 Present day surface ocean currents in the Mozam-bique Channel (solid arrows) are southndashsouthwest andwould not have facilitated west to east transoceanic dispersalfrom Africa to Madagascar [153] By contrast westerly sur-face ocean currents in the Eocene (dashed arrows) would

                      have facilitated dispersal across the Mozambique Channelfrom Africa to Madagascar especially during tropicalstorms [154] The outline of Madagascar with dashed linesshows its approximate position relative to Africa during theEocene

                      2492 M S Springer et al Mammalian historical biogeography

                      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                      dispersal Corridors connect two areas and are per-meable to all animals filter bridges impose selectivebarriers that affect some but not all animals andsweepstakes dispersal is required when there arestrong barriers to migration such as high mountainbarriers or oceans

                      Simpson [2] suggested that Madagascarrsquos livingmammals were the product of sweepstakes dispersalfrom Africa to Madagascar Sweepstakes dispersalhypotheses fell out of favour with the validation ofplate tectonic theory and were summarily dismissedas lsquomiraculousrsquo hypotheses with no scientific basis[145] However it has become apparent that some dis-tributional patterns can only be explained bysweepstakes dispersal [146] Observational data alsoprovide support for long-distance vertebrate dispersal[147] Examples of low probability sweepstakes disper-sal involving mammals include the origins of theendemic mammal fauna in Madagascar and theoccurrence of caviomorph rodents and platyrrhine pri-mates in South America

                      Madagascarrsquos strictly terrestrial extant mammal faunaincludes endemic lineages from four placental orderstenrecs (Afrosoricida) euplerids (Carnivora) neso-myines (Rodentia) and lemurs (Primates) In eachlineage Madagascar endemics comprise monophyleticassemblages with closest living relatives in Africa[148149] Madagascar separated from Africa approxi-mately 165 Ma but maintained its connection withAntarctica via the Kerguelen Plateau until as late as80 Ma at which time it became permanentlyseparated from other Gondwanan landmasses This his-tory suggests that Madagascarrsquos terrestrial endemicmammals are either the ancient descendants of vicariantevents that occurred prior to 80 Ma or reached Mada-gascar via transoceanic sweepstakes dispersal at a latertime Another possibility is that a land bridge connectedAfrica and Madagascar between 45 and 26 Ma [150]

                      Molecular divergence dates suggest that all fourendemic lineages last shared a common ancestorwith their African sister group in the Cenozoic[148149151152] Poux et al [148] concluded thatdispersal by lemurs rodents and carnivorans musthave occurred by transoceanic dispersal rather thanland bridge dispersal based on molecular dates forthe colonization of Madagascar that were outside ofthe land bridge window ie 60ndash50 Ma for lemurs26ndash19 Ma for carnivorans and 24ndash20 Ma for rodentsHowever present ocean currents allow for dispersalfrom Madagascar to Africa but oppose reciprocal dis-persal from Africa to Madagascar across theMozambique Channel If ocean currents were thesame for most of the Cenozoic as they are todaythey would not have facilitated west to east transocea-nic dispersal across the Mozambique Channel becauseof the strong southndashsouthwest flow of the Mozambi-que Current [153]

                      Ali amp Huber [154] addressed this problem by simu-lating surface ocean currents in the Indian Oceanduring the Eocene They concluded that large-scaleocean current systems in the Eocene were profoundlydifferent from modern observed circulatory patternsand that the flow along the African coast was eastwardtowards Madagascar instead of southward through the

                      Phil Trans R Soc B (2011)

                      Mozambique Channel (figure 5) Ali amp Huber [154]further suggested that dispersal probabilities wereenhanced by tropical storms that (i) generated largefloating tree islands that would have allowed for asuccessful oceanic voyage and (ii) acceleratedtransportation rates from Africa to Madagascar thatwould have allowed for complete crossing of theMozambique Channel in 25ndash30 days

                      The dispersal of four groups of fully terrestrialmammals from Africa to Madagascar at a time whenthere was no land bridge is a testament to the impor-tance of rare sweepstakes events in the evolutionaryhistory of Placentalia Even more remarkable is theoccurrence of two different groups of placental mam-mals hystricognath rodents and anthropoid primatesin Africa and South America

                      Hystricognathi includes Hystricidae (Old World por-cupines) and Phiomorpha (eg cane rats dassie rats)from the Old World and Caviomorpha (eg porcupineschinchillas) from the New World The oldest hystricog-naths are from the late Eocene Egypt and have beendated at approximately 37 Ma [81] Old World hystri-cognaths are paraphyletic usually with phiomorphshaving closer phylogenetic affinities to South Americancaviomorphs than to hystricids [14155156] Relaxedclock dates suggest that South American caviomorphslast shared a common ancestor with phiomorphsbetween 45 and 36 Ma [81155157] The most recentcommon ancestor of Caviomorpha has been dated at45ndash31 Ma [81155157158]

                      PacificOcean

                      NorthAtlanticOcean

                      SouthAtlantic Ocean

                      IndianOcean

                      NorthAmerica

                      SouthAmerica

                      Africa

                      Antarctica

                      Australia

                      Asia

                      Europe

                      PacificOcean1b

                      1b

                      1a3

                      2

                      Middle Eocene

                      Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

                      South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

                      Mammalian historical biogeography M S Springer et al 2493

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                      Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

                      The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

                      Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

                      Phil Trans R Soc B (2011)

                      phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

                      9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

                      The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

                      Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

                      or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

                      node number (figure 7) Eick et al [12] re-analysis

                      1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

                      ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

                      3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

                      4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

                      9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

                      10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

                      11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

                      12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

                      ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

                      13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

                      ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

                      BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

                      14 A A B C AC BC ABC15 A A B C AC BC

                      16 A A B C17 A A B AC BC ABC

                      2494 M S Springer et al Mammalian historical biogeography

                      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                      and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

                      We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

                      Phil Trans R Soc B (2011)

                      Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

                      FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

                      1

                      2

                      3

                      4

                      56

                      7

                      8

                      9

                      10

                      11

                      1213

                      14

                      1516

                      17

                      EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

                      Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

                      Mammalian historical biogeography M S Springer et al 2495

                      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                      with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

                      10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

                      In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

                      Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

                      Phil Trans R Soc B (2011)

                      sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

                      In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

                      11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

                      In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

                      With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

                      12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

                      2496 M S Springer et al Mammalian historical biogeography

                      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                      together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

                      MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

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                      mammalian biodiversity Phil Trans R Soc B 366

                      2451ndash2461 (doi101098rstb20110090)2 Simpson G G 1940 Mammals and land bridges

                      J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

                      Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

                      4 Springer M S Meredith R W Eizirik E Teeling

                      E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

                      5 Bollback J P 2006 SIMMAP stochastic charactermapping of discrete traits on phylogenies BMC Bioin-form 7 88 (doi1011861471-2105-7-88)

                      6 Drummond A J Ho S Y W Phillips M J amp Ram-baut A 2006 Relaxed phylogenetics and dating withconfidence PLoS Biol 4 e88 (doi101371journalpbio0040088)

                      7 Zuckerkandl E amp Pauling L 1962 Molecular diseaseevolution and genetic heterogeneity In Horizons in bio-chemistry (eds M Kasha amp B Pullman) pp 189ndash225New York NY Academic Press

                      8 Douady C J amp Douzery E J P 2003 Molecular esti-mation of eulipotyphlan divergence times and theevolution of lsquoInsectivorarsquo Mol Phylogenet Evol 28285ndash296 (doi101016S1055-7903(03)00119-2)

                      9 Douady C J Catzeflis F Raman J Springer M S

                      amp Stanhope M J 2003 Molecular evidence for theSahara as a vicariant agent and the role of Miocene cli-matic events in the diversification of the mammalianorder Macroscelidea (elephant shrews) Proc NatlAcad Sci USA 100 8325ndash8330 (doi101073pnas

                      0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

                      S J 2003 Placental mammal diversification and theCretaceousndashTertiary boundary Proc Natl Acad SciUSA 100 1056ndash1061 (doi101073pnas0334222

                      100)11 Delsuc F Vizcaıno S F amp Douzery E J P 2004

                      Influence of Tertiary paleoenvironmental changes onthe diversification of South American mammals a

                      relaxed molecular clock study within xenarthransBMC Evol Biol 4 11 (doi1011861471-2148-4-11)

                      Phil Trans R Soc B (2011)

                      12 Eick G N Jacobs D S amp Matthee C A 2005 Anuclear DNA phylogenetic perspective on the evolutionof echolocation and historical biogeography of extant

                      bats (Chiroptera) Mol Biol Evol 22 1869ndash1886(doi101093molbevmsi180)

                      13 Teeling E C Springer M S Madsen O Bates POrsquoBrien S J amp Murphy W J 2005 A molecular phy-logeny for bats illuminates biogeography and the fossil

                      record Science 307 580ndash584 (doi101126science1105113)

                      14 Huchon D Chevret P Jordan U Kilpatrick C WRanwez V Jenkins P D Brosius J amp Schmitz J

                      2007 Multiple molecular evidences for a living mamma-lian fossil Proc Natl Acad Sci USA 104 7495ndash7499(doi101073pnas0701289104)

                      15 Janecka J E Miller W Pringle T H Wiens FZitzmann A Helgen K M Springer M S amp

                      Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

                      16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

                      the root of the placental mammal tree Genome Res 17413ndash421 (doi101101gr5918807)

                      17 Beck R M 2008 A dated phylogeny of marsupialsusing a molecular supermatrix and multiple fossil con-straints J Mammal 89 175ndash189 (doi10164406-

                      MAMM-A-4371)18 Meredith R W Westerman M amp Springer M S

                      2008 A timescale and phylogeny for lsquobandicootsrsquo (Pera-melemorphia Marsupialia) based on sequences for five

                      nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

                      19 Meredith R W Westerman M amp Springer M S2008 Phylogeny and timescale for the living genera ofkangaroos and kin (Macropodiformes Marsupialia)

                      based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

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                      21 Meredith R W Krajewski C Westerman W ampSpringer M S 2009 Relationships and divergencetimes among the orders and families of marsupialsMus N Ariz Bull 65 383ndash406

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                      23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

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                      estimating divergence times in the absence of rate con-stancy Mol Biol Evol 14 1218ndash1231

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                      ecular evolution and divergence times a penalizedlikelihood approach Mol Biol Evol 19 101ndash109

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                      27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

                      Mammalian historical biogeography M S Springer et al 2497

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                      credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

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                      in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

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                      M J 2005 A likelihood framework for inferring theevolution of geographic range on phylogenetic treesEvolution 59 2299ndash2311

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                      local extinction and cladogenesis Syst Biol 57 4ndash14 (doi10108010635150701883881)

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                      version 3 analysis of phylogeny and character evolutionSunderland MA Sinauer Associates

                      40 Clark J R Ree R H Alfaro M E King M G

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                      ology In Problems of phylogenetic reconstruction (eds K AJoysey amp A E Friday) pp 21ndash74 London UK Aca-demic Press

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                      ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

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                      Phil Trans R Soc B (2011)

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                      phy of bats in South America Chiroptera Neotropical15 391ndash410

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                      grative historical biogeography J Int Comp Biol 43261ndash270 (doi101093icb432261)

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                      Cretaceous terrestrial vertebrates from Madagascarimplications for Latin American biogeography AnnMo Bot Gard 93 178ndash208 (doi1034170026-6493(2006)93[178LCTVFM]20CO2)

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                      dinosaurs link southern landmasses in the Mid-Cretac-eous Proc R Soc Lond B 271 1325ndash1330 (doi101098rspb20042692)

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                      356121a0)52 Novacek M J 1993 Reflections on higher mammalian

                      phylogenetics J Mamm Evol 1 1064ndash755453 Springer M S Cleven G C Madsen O de Jong

                      W W Waddell V G Amrine H M amp Stanhope

                      M J 1997 Endemic African mammals shake the phylo-genetic tree Nature 388 61ndash64 (doi10103840386)

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                      clades In The rise of placental mammals origins andrelationships of the major extant clades (eds K D Roseamp J D Archibald) pp 37ndash49 Baltimore MD JohnsHopkins University Press

                      55 Stanhope M J Madsen O Waddell V G Cleven

                      G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

                      56 Stanhope M J Waddell V G Madsen O de Jong

                      W W Hedges S B Cleven G C Kao D ampSpringer M S 1998 Molecular evidence for multipleorigins of Insectivora and for a new order of endemicAfrican insectivore mammals Proc Natl Acad SciUSA 95 9967ndash9972 (doi101073pnas95179967)

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                      58 Waddell P J Kishino H amp Ota R 2001 A phyloge-netic foundation for comparative mammaliangenomics Genome Inform 12 141ndash154

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                      mammal radiation J Hered 92 212ndash219 (doi101093jhered922212)

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                      61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

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                      tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

                      63 Scally M Madsen O Douady C J de Jong W WStanhope M J amp Springer M S 2001 Molecular

                      2498 M S Springer et al Mammalian historical biogeography

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                      evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

                      64 Springer M S amp de Jong W W 2001 Which mamma-lian supertree to bark up Science 291 1709ndash1711

                      65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

                      (doi101093bioinformaticsbtl446)66 Benton M J amp Donoghue P C J 2007 Paleontologi-

                      cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

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                      molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

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                      70 Gheerbrant E 2009 Paleocene emergence of elephantrelatives and the rapid radiation of African ungulatesProc Natl Acad Sci USA 106 10717ndash10721(doi101073pnas0900251106)

                      71 Bergqvist L P Abrantes E A L amp Avilla L D S

                      2004 The Xenarthra (Mammalia) of Sao Jose de Ita-boraı Basin (upper Paleocene Itaboraian) Rio deJaneiro Brazil Geodiversitas 26 323ndash337

                      72 Carlini A A Pascual R Reguero M A Scillato-

                      Yane G J Tonni E P amp Vizcaıno S F 1990 Thefirst Paleogene land placental mammal from Antarcticaits paleoclimatic and paleobiogeographical bearings InAbstracts IV International Congress of Systematic and Evol-utionary Biology (eds B Cox amp J Reveal) 325 p

                      Baltimore MD University of Maryland73 Vizcaıno S F amp Scillato-Yane G J 1995 An Eocene

                      Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

                      74 Benton M J Donoghue P C J amp Asher R J 2009

                      Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

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                      In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

                      76 Hunt Jr R M amp Tedford R H 1993 Phylogenetic

                      relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

                      77 Wesley-Hunt G D amp Flynn J J 2005 Phylogeny ofthe Carnivora basal relationships among the carnivora-morphans and assessment of the position oflsquoMiacoidearsquo relative to Carnivora J Syst Palaeontol 31ndash28 (doi101017S1477201904001518)

                      78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

                      79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

                      Phil Trans R Soc B (2011)

                      80 Storch G amp Seiffert C 2007 Extraordinarily preservedspecimen of the oldest known glirid from the middleEocene of Messel (Rodentia) J Vertebr Paleontol 27

                      189ndash194 (doi1016710272-4634(2007)27[189EPSOTO]20CO2)

                      81 Sallam H M Seiffert E R Steiper M E amp SimonsE L 2009 Fossil and molecular evidence constrainscenarios for the early evolutionary and biogeographic

                      history of hystricognathous rodents Proc Natl AcadSci USA 106 16 722ndash16 727 (doi101073pnas0908702106)

                      82 Hartenberger L 1998 Description of the radiation of

                      the Rodentia (Mammalia) from the Late Paleocene tothe Miocene phylogenetic consequences C R AcadSci II A 326 439ndash444

                      83 Vucetich M G Verzi D H amp Hartenberger L 1999Review and analysis of the radiation of the South

                      American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

                      84 Flynn L J amp Jacobs L L 2008 Castoridea In Evolution oftertiary mammals of North America small mammals xenar-thrans and marine mammals (eds C M Janis G F

                      Gunnell amp M D Uhen) vol 2 pp 391ndash405 CambridgeUK Cambridge University Press

                      85 Marenssi S A Reguero M A Santillana S N ampVizcaıno S F 1994 Eocene land mammals from Sey-mour Island Antarctica paleobiogeographical

                      implications Antarctic Sci 6 3ndash15 (doi101017S0954102094000027)

                      86 MacPhee R D E amp Reguero M A 2010 Reinterpre-tation of a middle Eocene record of Tardigrada (Pilosa

                      Xenarthra Mammalia) from La Meseta FormationSeymour Island West Antarctica Am Mus Novit3689 1ndash21 (doi1012067031)

                      87 McKenna M C amp Bell S K 1997 Classification ofmammals above the species level New York NY Colum-

                      bia University Press88 Gaudin T J amp Branham D G 1998 The phylogeny of

                      the Myrmecophagidae (Mammalia Xenarthra Vermi-lingua) and relationship of Eurotamandua to theVermilingua J Mamm Evol 5 237ndash265 (doi10

                      1023A1020512529767)89 Galliari F C Carlini A A amp Sanchez-Villagra M R

                      2010 Evolution of the axial skeleton in armadillos(Mammalia Dasypodidae) Mamm Biol 75 326ndash333 (doi101016jmambio200903014)

                      90 Poljak S Confalonieri V Fasanella M Gabrielli Mamp Lizarralde M S 2010 Phylogeography of the arma-dillo Chaetophractus villosus (Dasypodidae Xenarthra)post-glacial range expansion from Pampas to Patagonia

                      (Argentina) Mol Phylogenet Evol 55 38ndash46 (doi101016jympev200912021)

                      91 Sige B Crochet J-Y amp Insole A 1977 Les plusvielles taupes Geobios Mem Spec 1 141ndash157(doi101016S0016-6995(77)80014-4)

                      92 Gunnell G F Bown T M Hutchinson J H ampBloch J I 2008 Lipotyphla In Evolution of Tertiarymammals of North America small mammals xenarthransand marine mammals vol 2 (eds C M Janis G FGunnell amp M D Uhen) pp 89ndash125 Cambridge

                      UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

                      amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

                      94 Tabuce R Asher R J amp Lehmann T 2008 Afrother-ian mammals a review of current data Mammalia 722ndash14 (doi101515MAMM2008004)

                      Mammalian historical biogeography M S Springer et al 2499

                      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                      95 Butler P M 1995 Fossil Macroscelidea Mammal Rev25 3ndash14 (doi101111j1365-29071995tb00432x)

                      96 Milledge S 2003 Fossil aardvarks from the Lothagam

                      beds In Lothagam the dawn of humanity in EasternAfrica (eds J Leakey amp J Harris) pp 363ndash368New York NY Columbia University Press

                      97 Flynn L J amp Jacobs L L 2008 Aplodontia In Evol-ution of tertiary mammals of North America smallmammals xenarthrans and marine mammals vol 2(eds C M Janis G F Gunnell amp M D Uhen) pp377ndash390 Cambridge UK Cambridge UniversityPress

                      98 Marivaux L Ducrocq S Jaeger J-J Marandat BSudre J Chaimanee Y Tun S T Htoon W ampSoe A N 2005 New remains of Pondaungimysanomaluropsis (Rodentia Anomaluroidea) from thelatest middle Eocene Pondaung Formation of

                      Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

                      99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

                      100 Antoine P-O et al 2007 The middle Miocene (Laven-

                      tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

                      Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

                      Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

                      (doi1016710272-4634(2007)27[683OADOTO]20CO2)

                      102 Frailey C D amp Campbell K E 2004 The rodents ofthe Santa Rosa Local Fauna In The Paleogene mamma-lian fauna of Santa Rosa Amazonian Peru (ed K E

                      Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

                      103 Martin T 2004 Evolution of incisor enamel micro-structure in Lagomorpha J Vertebr Paleontol 24

                      411ndash426 (doi1016712513)104 Lopez-Martinez N 2008 The lagomorph fossil

                      record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

                      105 Marivaux L Bocat L Chaimanee Y Jaeger J-JMarandat B Srisuk P Tafforeau P Yamee C ampWelcomme L 2006 Cynocephalid dermopterans

                      from the Palaeogene of South Asia (Thailand Myan-mar and Pakistan) systematic evolutionary andpalaeobiogeographic implications Zool Scripta 35395ndash420 (doi101111j1463-6409200600235x)

                      106 Tong Y 1988 Fossil tree shrews from the Eocene

                      Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

                      107 Godfrey L R amp Jungers W L 2002 Quaternary fossillemurs In The primate fossil record (ed W C Hartwig)pp 97ndash121 Cambridge UK Cambridge University

                      Press108 Bajpai S Kay R F Williams B A Das D P

                      Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

                      Phil Trans R Soc B (2011)

                      109 Beard K C Qi T Dawson M R Wang B amp Li C1994 A diverse new primate fauna from middle Eocenefissure-fillings in southeastern China Nature 368

                      604ndash609 (doi101038368604a0)110 Orliac M Boisserie J-R MacLatchy L amp Lihoreau

                      F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

                      111 Honey J G Harrison J A Prothero D R ampStevens M S 1998 Camelidae In Evolution of Tertiarymammals of North America terrestrial carnivoresungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp439ndash462 Cambridge UK Cambridge University Press

                      112 Metais G amp Vislobokova I 2008 Basal ruminants In

                      The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

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                      E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

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                      ary Science 295 2062ndash2065 (doi101126science1068700)

                      115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

                      earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

                      116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

                      117 Colbert M W amp Schoch R M 1998 Tapiroidea and

                      other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

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                      120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

                      cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

                      121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

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                      Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

                      126 Zack S P Penkrot T A Bloch J I amp Rose K D

                      2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

                      127 Tabuce R Marivaux L Adaci M Bensalah M

                      Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

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                      America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

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                      133 Cifelli R L amp Davis B M 2003 Marsupial origins

                      Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

                      2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

                      135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

                      eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

                      136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

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                      W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

                      260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

                      N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

                      139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

                      Phil Trans R Soc B (2011)

                      140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

                      141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

                      0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

                      roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

                      of mammals Proc Natl Acad Sci USA 106 5235ndash5240

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                      144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

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                      dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

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                      108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

                      dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                      37091305110239)150 McCall R 1997 Implications of recent geological

                      investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

                      151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

                      152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

                      153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

                      154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

                      155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

                      caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

                      156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

                      Mammalian historical biogeography M S Springer et al 2501

                      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                      revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

                      157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

                      158 Rowe D L Dunn K A Adkins R M amp Honeycutt

                      R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

                      159 Beard K C Wang B Dawson M Huang X amp

                      Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

                      160 Beard K C amp Wang J 2004 The eosimiid primates

                      (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

                      161 Arnason U Gullberg A Schweizer B A amp Janke A

                      2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

                      162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

                      163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

                      164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

                      513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

                      ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

                      AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

                      diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

                      167 Gunnell G F amp Simmons N B 2005 Fossil evidence

                      and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                      168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                      Wyoming and the evolution of flight and echolocationNature 451 818ndash822

                      169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

                      paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                      170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

                      171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

                      ian evolution Science 302 1934ndash1939 (doi101126science1090718)

                      172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

                      Phil Trans R Soc B (2011)

                      dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                      173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

                      D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

                      174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

                      from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                      175 Cifelli R L 1993 Theria of metatherianndasheutherian

                      grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                      176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                      177 Wible J R 1990 Late Cretaceous marsupial petrosal

                      bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                      178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                      pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                      179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                      of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                      180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                      2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                      181 Beck R M Godthelp H Weisbecker V Archer M

                      amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                      182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                      Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                      183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                      for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                      184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                      implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                      185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                      phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                      186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                      marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                      187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                      2502 M S Springer et al Mammalian historical biogeography

                      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                      mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                      188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                      189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                      190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                      Phil Trans R Soc B (2011)

                      Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                      191 Springer M S amp Krajewski C 2009 Monotremes

                      (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                      192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                      53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                      In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                      194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                      • The historical biogeography of Mammalia
                        • Introduction
                        • Phylogeny reconstruction
                        • Molecular dating analyses
                        • Ancestral area reconstruction
                        • Box 1
                        • Ancestral area chronograms and palaeogeography
                        • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                        • Placental biogeography
                        • The importance of dispersal
                        • Bat biogeography
                        • Marsupial biogeography
                        • Monotreme biogeography
                        • Conclusions
                        • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
                        • REFERENCES

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                        0010

                        0010

                        0010

                        0010

                        00

                        0

                        00

                        0

                        08

                        8

                        00

                        000

                        0

                        03

                        1

                        08

                        9

                        00

                        000

                        0

                        00

                        0

                        09

                        9

                        00

                        000

                        0

                        00

                        1

                        09

                        9

                        00

                        0M

                        uri

                        dae

                        42

                        0100

                        0100

                        0100

                        0100

                        0100

                        00

                        0

                        09

                        7

                        00

                        0

                        00

                        000

                        0

                        09

                        4

                        00

                        0

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                        000

                        0

                        09

                        9

                        00

                        1

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                        09

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                        00

                        1

                        00

                        0

                        2490 M S Springer et al Mammalian historical biogeography

                        Phil Trans R Soc B (2011)

                        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                        Table 5 Comparison of different methods for reconstructing ancestral areas NA1 not applicable for monomorphic

                        reconstruction methods NA2 not applicable when the maximum number of areas is set at two NA2 not applicable formethods that employ single multistate charactersa

                        FP-MBC FP-SMCMACParsimony DIVA DIVA-2 DEC DEC-2 SM-MBC SM-SMC

                        nodes with ambiguous 75 129 128 1211 107 2323 2623 1617 614reconstructionsb 1920 1718 1012 410

                        nodes with 2 areasc 33 NA1 46 1618 1516 1820 2019 77 NA11720 1717 46

                        nodes with 3 areasd 00 NA1 00 65 NA2 66 NA2 00 NA145 00

                        empty nodese 95 NA3 NA3 NA3 NA3 NA3 NA3 34 NA344

                        aNumbers before slashes are based on analyses with area coding for extant taxa and numbers after slashes are based on analyses with areacoding for the oldest fossil See table 3 for abbreviationsbFor FP-MBC nodes were considered ambiguous if at least one area was reconstructed as (01) For SM-MBC and SM-SMC nodes wereconsidered ambiguous if the posterior probability (PP) of at least one area was 01 PP 09 (top line) or 02 PP 08 (bottom line)For DEC and DEC-2 nodes were considered ambiguous if the frequency ( f ) of at least one area was 01 f 09 (top line) or 02 p 08 (bottom line)cAt least two areas in at least one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) was takento include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line) or020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02 (bottomline)dAt least three areas in more than one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) wastaken to include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line)or 020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02(bottom line)eFor FP-MBC nodes were considered empty if all areas were reconstructed as 0 For SM-MBC nodes were considered empty if posteriorprobabilities were 010 (top line) or 020 (bottom line) for all four areas

                        Mammalian historical biogeography M S Springer et al 2491

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                        Eurasia throughout the Cretaceous but were absentfrom North America through much of the Late Cre-taceous and only attained appreciable diversity thereduring the last approximately 10 Myr of the period[133134] Boyer et al [135] concluded that theIndian subcontinent Eurasia and Africa are morelikely places of origin for Euarchonta than is NorthAmerica This agrees with our ancestral areareconstructions (figures 3 4 and tables 3 4)

                        Although there is robust support for the monophylyof Xenarthra Afrotheria and Boreoeutheria relation-ships among these three groups and the root of theplacental tree remain contentious [105460ndash63136]Murphy et al [62] and Springer et al [10] suggested acausal relationship between the sundering of Africa andSouth America and basal cladogenesis among crown-group placental mammals given the coincidence ofmolecular dates for the base of placentals and thevicariant separation of Africa and South Americaapproximately 100ndash120 Ma

                        Asher et al [125] analysed a combined matrix andrecovered Afrotheria in a nested position within Pla-centalia which contradicts the hypothesis that theplate tectonic separation of Africa and South Americaplayed a causal role in the early cladogenesis of placen-tal mammals However the nested position forAfrotheria resulted from the paraphyly of Euarchonto-glires Glires and Rodentia Rare genomic changesconfirm the monophyly of Xenarthra [137] Afrotheria[138ndash142] Euarchontoglires [139141142] Laura-siatheria [139141142] and Boreoeutheria[139141142] and preclude a nested position forAfrotheria in the placental tree

                        Rare genomic changes have also been used toexamine the position of the placental root Kriegs

                        Phil Trans R Soc B (2011)

                        et al [139] reported LINE insertions that are sharedby Epitheria whereas Murphy et al [16] discoveredrare genomic changes that support AtlantogenataNishihara et al [142] performed genome-wide retro-poson analyses and found 22 25 and 21 LINEinsertions for Exafroplacentalia Epitheria and Atlan-togenata respectively Based on these resultsNishihara et al [142] concluded that XenarthraAfrotheria and Boreoeutheria diverged from oneanother nearly simultaneously They also suggested anew palaeogeographical model for the breakup of Pan-gaea and Gondwana in which Africa becomes isolatedfrom both South America and Laurasia at approxi-mately 120 Ma and argued that these coeval platetectonic events provide an explanation for the simul-taneous divergence of Afrotheria Xenarthra andBoreoeutheria However relaxed clock dates for thebase of Placentalia are closer to 100 Ma than to120 Ma (figures 3 and 4) A second difficulty concernsthe opening of the South Atlantic Nishihara et al[142] suggested that the Brazilian Bridge which rep-resented the last connection between Africa andSouth America was severed at approximately120 Mya but other recent reconstructions suggestthat the connection between the South Atlantic andCentral Atlantic was not established until lateAptianmid-Albian times (approx 110ndash100 Ma)[143144]

                        8 THE IMPORTANCE OF DISPERSALIn the context of pre-plate tectonic views of theEarth Simpson [2] proposed three types ofmigration routes to describe the movement of ani-mals corridors filter bridges and sweepstakes

                        Africa

                        Mad

                        agas

                        car

                        Tanzania

                        Mozambique

                        N

                        100 mi

                        Figure 5 Present day surface ocean currents in the Mozam-bique Channel (solid arrows) are southndashsouthwest andwould not have facilitated west to east transoceanic dispersalfrom Africa to Madagascar [153] By contrast westerly sur-face ocean currents in the Eocene (dashed arrows) would

                        have facilitated dispersal across the Mozambique Channelfrom Africa to Madagascar especially during tropicalstorms [154] The outline of Madagascar with dashed linesshows its approximate position relative to Africa during theEocene

                        2492 M S Springer et al Mammalian historical biogeography

                        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                        dispersal Corridors connect two areas and are per-meable to all animals filter bridges impose selectivebarriers that affect some but not all animals andsweepstakes dispersal is required when there arestrong barriers to migration such as high mountainbarriers or oceans

                        Simpson [2] suggested that Madagascarrsquos livingmammals were the product of sweepstakes dispersalfrom Africa to Madagascar Sweepstakes dispersalhypotheses fell out of favour with the validation ofplate tectonic theory and were summarily dismissedas lsquomiraculousrsquo hypotheses with no scientific basis[145] However it has become apparent that some dis-tributional patterns can only be explained bysweepstakes dispersal [146] Observational data alsoprovide support for long-distance vertebrate dispersal[147] Examples of low probability sweepstakes disper-sal involving mammals include the origins of theendemic mammal fauna in Madagascar and theoccurrence of caviomorph rodents and platyrrhine pri-mates in South America

                        Madagascarrsquos strictly terrestrial extant mammal faunaincludes endemic lineages from four placental orderstenrecs (Afrosoricida) euplerids (Carnivora) neso-myines (Rodentia) and lemurs (Primates) In eachlineage Madagascar endemics comprise monophyleticassemblages with closest living relatives in Africa[148149] Madagascar separated from Africa approxi-mately 165 Ma but maintained its connection withAntarctica via the Kerguelen Plateau until as late as80 Ma at which time it became permanentlyseparated from other Gondwanan landmasses This his-tory suggests that Madagascarrsquos terrestrial endemicmammals are either the ancient descendants of vicariantevents that occurred prior to 80 Ma or reached Mada-gascar via transoceanic sweepstakes dispersal at a latertime Another possibility is that a land bridge connectedAfrica and Madagascar between 45 and 26 Ma [150]

                        Molecular divergence dates suggest that all fourendemic lineages last shared a common ancestorwith their African sister group in the Cenozoic[148149151152] Poux et al [148] concluded thatdispersal by lemurs rodents and carnivorans musthave occurred by transoceanic dispersal rather thanland bridge dispersal based on molecular dates forthe colonization of Madagascar that were outside ofthe land bridge window ie 60ndash50 Ma for lemurs26ndash19 Ma for carnivorans and 24ndash20 Ma for rodentsHowever present ocean currents allow for dispersalfrom Madagascar to Africa but oppose reciprocal dis-persal from Africa to Madagascar across theMozambique Channel If ocean currents were thesame for most of the Cenozoic as they are todaythey would not have facilitated west to east transocea-nic dispersal across the Mozambique Channel becauseof the strong southndashsouthwest flow of the Mozambi-que Current [153]

                        Ali amp Huber [154] addressed this problem by simu-lating surface ocean currents in the Indian Oceanduring the Eocene They concluded that large-scaleocean current systems in the Eocene were profoundlydifferent from modern observed circulatory patternsand that the flow along the African coast was eastwardtowards Madagascar instead of southward through the

                        Phil Trans R Soc B (2011)

                        Mozambique Channel (figure 5) Ali amp Huber [154]further suggested that dispersal probabilities wereenhanced by tropical storms that (i) generated largefloating tree islands that would have allowed for asuccessful oceanic voyage and (ii) acceleratedtransportation rates from Africa to Madagascar thatwould have allowed for complete crossing of theMozambique Channel in 25ndash30 days

                        The dispersal of four groups of fully terrestrialmammals from Africa to Madagascar at a time whenthere was no land bridge is a testament to the impor-tance of rare sweepstakes events in the evolutionaryhistory of Placentalia Even more remarkable is theoccurrence of two different groups of placental mam-mals hystricognath rodents and anthropoid primatesin Africa and South America

                        Hystricognathi includes Hystricidae (Old World por-cupines) and Phiomorpha (eg cane rats dassie rats)from the Old World and Caviomorpha (eg porcupineschinchillas) from the New World The oldest hystricog-naths are from the late Eocene Egypt and have beendated at approximately 37 Ma [81] Old World hystri-cognaths are paraphyletic usually with phiomorphshaving closer phylogenetic affinities to South Americancaviomorphs than to hystricids [14155156] Relaxedclock dates suggest that South American caviomorphslast shared a common ancestor with phiomorphsbetween 45 and 36 Ma [81155157] The most recentcommon ancestor of Caviomorpha has been dated at45ndash31 Ma [81155157158]

                        PacificOcean

                        NorthAtlanticOcean

                        SouthAtlantic Ocean

                        IndianOcean

                        NorthAmerica

                        SouthAmerica

                        Africa

                        Antarctica

                        Australia

                        Asia

                        Europe

                        PacificOcean1b

                        1b

                        1a3

                        2

                        Middle Eocene

                        Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

                        South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

                        Mammalian historical biogeography M S Springer et al 2493

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                        Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

                        The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

                        Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

                        Phil Trans R Soc B (2011)

                        phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

                        9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

                        The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

                        Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

                        or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

                        node number (figure 7) Eick et al [12] re-analysis

                        1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

                        ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

                        3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

                        4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

                        9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

                        10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

                        11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

                        12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

                        ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

                        13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

                        ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

                        BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

                        14 A A B C AC BC ABC15 A A B C AC BC

                        16 A A B C17 A A B AC BC ABC

                        2494 M S Springer et al Mammalian historical biogeography

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                        and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

                        We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

                        Phil Trans R Soc B (2011)

                        Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

                        FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

                        1

                        2

                        3

                        4

                        56

                        7

                        8

                        9

                        10

                        11

                        1213

                        14

                        1516

                        17

                        EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

                        Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

                        Mammalian historical biogeography M S Springer et al 2495

                        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                        with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

                        10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

                        In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

                        Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

                        Phil Trans R Soc B (2011)

                        sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

                        In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

                        11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

                        In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

                        With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

                        12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

                        2496 M S Springer et al Mammalian historical biogeography

                        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                        together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

                        MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

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                        mammalian biodiversity Phil Trans R Soc B 366

                        2451ndash2461 (doi101098rstb20110090)2 Simpson G G 1940 Mammals and land bridges

                        J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

                        Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

                        4 Springer M S Meredith R W Eizirik E Teeling

                        E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

                        5 Bollback J P 2006 SIMMAP stochastic charactermapping of discrete traits on phylogenies BMC Bioin-form 7 88 (doi1011861471-2105-7-88)

                        6 Drummond A J Ho S Y W Phillips M J amp Ram-baut A 2006 Relaxed phylogenetics and dating withconfidence PLoS Biol 4 e88 (doi101371journalpbio0040088)

                        7 Zuckerkandl E amp Pauling L 1962 Molecular diseaseevolution and genetic heterogeneity In Horizons in bio-chemistry (eds M Kasha amp B Pullman) pp 189ndash225New York NY Academic Press

                        8 Douady C J amp Douzery E J P 2003 Molecular esti-mation of eulipotyphlan divergence times and theevolution of lsquoInsectivorarsquo Mol Phylogenet Evol 28285ndash296 (doi101016S1055-7903(03)00119-2)

                        9 Douady C J Catzeflis F Raman J Springer M S

                        amp Stanhope M J 2003 Molecular evidence for theSahara as a vicariant agent and the role of Miocene cli-matic events in the diversification of the mammalianorder Macroscelidea (elephant shrews) Proc NatlAcad Sci USA 100 8325ndash8330 (doi101073pnas

                        0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

                        S J 2003 Placental mammal diversification and theCretaceousndashTertiary boundary Proc Natl Acad SciUSA 100 1056ndash1061 (doi101073pnas0334222

                        100)11 Delsuc F Vizcaıno S F amp Douzery E J P 2004

                        Influence of Tertiary paleoenvironmental changes onthe diversification of South American mammals a

                        relaxed molecular clock study within xenarthransBMC Evol Biol 4 11 (doi1011861471-2148-4-11)

                        Phil Trans R Soc B (2011)

                        12 Eick G N Jacobs D S amp Matthee C A 2005 Anuclear DNA phylogenetic perspective on the evolutionof echolocation and historical biogeography of extant

                        bats (Chiroptera) Mol Biol Evol 22 1869ndash1886(doi101093molbevmsi180)

                        13 Teeling E C Springer M S Madsen O Bates POrsquoBrien S J amp Murphy W J 2005 A molecular phy-logeny for bats illuminates biogeography and the fossil

                        record Science 307 580ndash584 (doi101126science1105113)

                        14 Huchon D Chevret P Jordan U Kilpatrick C WRanwez V Jenkins P D Brosius J amp Schmitz J

                        2007 Multiple molecular evidences for a living mamma-lian fossil Proc Natl Acad Sci USA 104 7495ndash7499(doi101073pnas0701289104)

                        15 Janecka J E Miller W Pringle T H Wiens FZitzmann A Helgen K M Springer M S amp

                        Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

                        16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

                        the root of the placental mammal tree Genome Res 17413ndash421 (doi101101gr5918807)

                        17 Beck R M 2008 A dated phylogeny of marsupialsusing a molecular supermatrix and multiple fossil con-straints J Mammal 89 175ndash189 (doi10164406-

                        MAMM-A-4371)18 Meredith R W Westerman M amp Springer M S

                        2008 A timescale and phylogeny for lsquobandicootsrsquo (Pera-melemorphia Marsupialia) based on sequences for five

                        nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

                        19 Meredith R W Westerman M amp Springer M S2008 Phylogeny and timescale for the living genera ofkangaroos and kin (Macropodiformes Marsupialia)

                        based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

                        20 Meredith R W Westerman M amp Springer M S 2009A phylogeny of Diprotodontia (Marsupialia) based onsequences for five nuclear genes Mol Phylogenet Evol51 554ndash571 (doi101016jympev200902009)

                        21 Meredith R W Krajewski C Westerman W ampSpringer M S 2009 Relationships and divergencetimes among the orders and families of marsupialsMus N Ariz Bull 65 383ndash406

                        22 Chatterjee H J Ho S W Y Barnes I amp Groves C2009 Estimating the phylogeny and divergence times ofprimates using a supermatrix approach BMC EvolBiol 9 259 (doi1011861471-2148-9-259)

                        23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

                        (doi101016jympev201001033)24 Sanderson M J 1997 A nonparametric approach to

                        estimating divergence times in the absence of rate con-stancy Mol Biol Evol 14 1218ndash1231

                        25 Sanderson M J 2002 Estimating absolute rates of mol-

                        ecular evolution and divergence times a penalizedlikelihood approach Mol Biol Evol 19 101ndash109

                        26 Thorne J L amp Kishino H 2002 Divergence time andevolutionary rate estimation with multilocus data SystBiol 51 689ndash702 (doi10108010635150290102456)

                        27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

                        Mammalian historical biogeography M S Springer et al 2497

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                        28 Battistuzzi F U Filipski A Hedges S B amp KumarS 2010 Performance of relaxed-clock methods in esti-mating evolutionary divergence times and their

                        credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

                        29 Brown R P amp Yang Z 2010 Bayesian dating of shal-low phylogenies with a relaxed molecular clock SystBiol 59 119ndash131 (doi101093sysbiosyp082)

                        30 Inoue J Donoghue P C J amp Yang Z 2010 Theimpact of the representation of fossil calibrations onBayesian estimation of species divergence times SystBiol 59 74ndash89 (doi101093sysbiosyp078)

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                        34 Wen J Xiang Q-Y Qian H Li J Want X-W amp

                        Ickert-Bond S M Intercontinental and intracontinen-tal biogeographymdashpatterns and methods J Syst Evol4 327ndash329

                        35 Nylander J A A Olsson U Alstrom P amp Sanmar-tın I 2008 Accounting for phylogenetic uncertainty

                        in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

                        36 Ree R H Moore B R Webb C O amp Donoghue

                        M J 2005 A likelihood framework for inferring theevolution of geographic range on phylogenetic treesEvolution 59 2299ndash2311

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                        local extinction and cladogenesis Syst Biol 57 4ndash14 (doi10108010635150701883881)

                        38 Hardy C R amp Linder H P 2005 Intraspecific varia-bility and timing in ancestral ecology reconstruction atest case from the Cape flora Syst Biol 54 299ndash316

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                        version 3 analysis of phylogeny and character evolutionSunderland MA Sinauer Associates

                        40 Clark J R Ree R H Alfaro M E King M G

                        Wagner W L amp Roalson E H 2008 A comparativestudy in ancestral range reconstruction methodsretracing the uncertain histories of insular lineagesSyst Biol 57 693ndash707 (doi101080106351508

                        02426473)41 Patterson C 1982 Morphological characters and hom-

                        ology In Problems of phylogenetic reconstruction (eds K AJoysey amp A E Friday) pp 21ndash74 London UK Aca-demic Press

                        42 Ree R H amp Sanmartın I 2009 Prospects and chal-lenges for parametric models in historicalbiogeographical inference J Biogeogr 36 1211ndash1220(doi101111j1365-2699200802068x)

                        43 Lamm K S amp Redelings B D 2009 Reconstructing

                        ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

                        44 Maddison W P amp Maddison D R 2009 Mesquite amodular system for evolutionary analysis version 272See httpmesquiteprojectorg

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                        Phil Trans R Soc B (2011)

                        46 Lim B K 2008 Historical biogeography of New Worldemballonurid bats (Tribe Diclidurini) taxon pulsediversification J Biogeogr 35 1385ndash1401 (doi10

                        1111j1365-2699200801888x)47 Lim B K 2009 Review of the origins and biogeogra-

                        phy of bats in South America Chiroptera Neotropical15 391ndash410

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                        grative historical biogeography J Int Comp Biol 43261ndash270 (doi101093icb432261)

                        49 Krause D W OrsquoConnor P M Rogers K C Samp-son S D Buckley G A amp Rogers R R 2006 Late

                        Cretaceous terrestrial vertebrates from Madagascarimplications for Latin American biogeography AnnMo Bot Gard 93 178ndash208 (doi1034170026-6493(2006)93[178LCTVFM]20CO2)

                        50 Sereno P C Wilson J A amp Conrad J L 2004 New

                        dinosaurs link southern landmasses in the Mid-Cretac-eous Proc R Soc Lond B 271 1325ndash1330 (doi101098rspb20042692)

                        51 Novacek M J 1992 Mammalian phylogeny shakingthe tree Nature 356 121ndash125 (doi101038

                        356121a0)52 Novacek M J 1993 Reflections on higher mammalian

                        phylogenetics J Mamm Evol 1 1064ndash755453 Springer M S Cleven G C Madsen O de Jong

                        W W Waddell V G Amrine H M amp Stanhope

                        M J 1997 Endemic African mammals shake the phylo-genetic tree Nature 388 61ndash64 (doi10103840386)

                        54 Springer M S Murphy W J Eizirik E amp OrsquoBrienS J 2005 Molecular evidence for major placental

                        clades In The rise of placental mammals origins andrelationships of the major extant clades (eds K D Roseamp J D Archibald) pp 37ndash49 Baltimore MD JohnsHopkins University Press

                        55 Stanhope M J Madsen O Waddell V G Cleven

                        G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

                        56 Stanhope M J Waddell V G Madsen O de Jong

                        W W Hedges S B Cleven G C Kao D ampSpringer M S 1998 Molecular evidence for multipleorigins of Insectivora and for a new order of endemicAfrican insectivore mammals Proc Natl Acad SciUSA 95 9967ndash9972 (doi101073pnas95179967)

                        57 Waddell P Okada N amp Hasegawa M 1999 Towardsresolving the interordinal relationships of placentalmammals Syst Biol 48 1ndash5 (doi101093sysbio4811)

                        58 Waddell P J Kishino H amp Ota R 2001 A phyloge-netic foundation for comparative mammaliangenomics Genome Inform 12 141ndash154

                        59 Eizirik E Murphy W J amp OrsquoBrien S J 2001 Mol-ecular dating and biogeography of the early placental

                        mammal radiation J Hered 92 212ndash219 (doi101093jhered922212)

                        60 Madsen O et al 2001 Parallel adaptive radiations intwo major clades of placental mammals Nature 409610ndash614 (doi10103835054544)

                        61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

                        62 Murphy W J et al 2001 Resolution of the early placen-

                        tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

                        63 Scally M Madsen O Douady C J de Jong W WStanhope M J amp Springer M S 2001 Molecular

                        2498 M S Springer et al Mammalian historical biogeography

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                        evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

                        64 Springer M S amp de Jong W W 2001 Which mamma-lian supertree to bark up Science 291 1709ndash1711

                        65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

                        (doi101093bioinformaticsbtl446)66 Benton M J amp Donoghue P C J 2007 Paleontologi-

                        cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

                        67 Reisz R R amp Muller J 2004 Molecular timescales andthe fossil record a paleontological perspective TrendsGenet 20 237ndash241 (doi101016jtig200403007)

                        68 Muller J amp Reisz R R 2005 Four well-constrainedcalibration points from the vertebrate fossil record for

                        molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

                        69 Gradstein F M amp Ogg J G 2009 The geologic timescale In The timetree of life (eds S B Hedges amp SKumar) pp 26ndash34 Oxford UK Oxford University Press

                        70 Gheerbrant E 2009 Paleocene emergence of elephantrelatives and the rapid radiation of African ungulatesProc Natl Acad Sci USA 106 10717ndash10721(doi101073pnas0900251106)

                        71 Bergqvist L P Abrantes E A L amp Avilla L D S

                        2004 The Xenarthra (Mammalia) of Sao Jose de Ita-boraı Basin (upper Paleocene Itaboraian) Rio deJaneiro Brazil Geodiversitas 26 323ndash337

                        72 Carlini A A Pascual R Reguero M A Scillato-

                        Yane G J Tonni E P amp Vizcaıno S F 1990 Thefirst Paleogene land placental mammal from Antarcticaits paleoclimatic and paleobiogeographical bearings InAbstracts IV International Congress of Systematic and Evol-utionary Biology (eds B Cox amp J Reveal) 325 p

                        Baltimore MD University of Maryland73 Vizcaıno S F amp Scillato-Yane G J 1995 An Eocene

                        Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

                        74 Benton M J Donoghue P C J amp Asher R J 2009

                        Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

                        75 Flynn J J 1996 Carnivoran phylogeny and rates ofevolution morphological taxonomic and molecular

                        In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

                        76 Hunt Jr R M amp Tedford R H 1993 Phylogenetic

                        relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

                        77 Wesley-Hunt G D amp Flynn J J 2005 Phylogeny ofthe Carnivora basal relationships among the carnivora-morphans and assessment of the position oflsquoMiacoidearsquo relative to Carnivora J Syst Palaeontol 31ndash28 (doi101017S1477201904001518)

                        78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

                        79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

                        Phil Trans R Soc B (2011)

                        80 Storch G amp Seiffert C 2007 Extraordinarily preservedspecimen of the oldest known glirid from the middleEocene of Messel (Rodentia) J Vertebr Paleontol 27

                        189ndash194 (doi1016710272-4634(2007)27[189EPSOTO]20CO2)

                        81 Sallam H M Seiffert E R Steiper M E amp SimonsE L 2009 Fossil and molecular evidence constrainscenarios for the early evolutionary and biogeographic

                        history of hystricognathous rodents Proc Natl AcadSci USA 106 16 722ndash16 727 (doi101073pnas0908702106)

                        82 Hartenberger L 1998 Description of the radiation of

                        the Rodentia (Mammalia) from the Late Paleocene tothe Miocene phylogenetic consequences C R AcadSci II A 326 439ndash444

                        83 Vucetich M G Verzi D H amp Hartenberger L 1999Review and analysis of the radiation of the South

                        American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

                        84 Flynn L J amp Jacobs L L 2008 Castoridea In Evolution oftertiary mammals of North America small mammals xenar-thrans and marine mammals (eds C M Janis G F

                        Gunnell amp M D Uhen) vol 2 pp 391ndash405 CambridgeUK Cambridge University Press

                        85 Marenssi S A Reguero M A Santillana S N ampVizcaıno S F 1994 Eocene land mammals from Sey-mour Island Antarctica paleobiogeographical

                        implications Antarctic Sci 6 3ndash15 (doi101017S0954102094000027)

                        86 MacPhee R D E amp Reguero M A 2010 Reinterpre-tation of a middle Eocene record of Tardigrada (Pilosa

                        Xenarthra Mammalia) from La Meseta FormationSeymour Island West Antarctica Am Mus Novit3689 1ndash21 (doi1012067031)

                        87 McKenna M C amp Bell S K 1997 Classification ofmammals above the species level New York NY Colum-

                        bia University Press88 Gaudin T J amp Branham D G 1998 The phylogeny of

                        the Myrmecophagidae (Mammalia Xenarthra Vermi-lingua) and relationship of Eurotamandua to theVermilingua J Mamm Evol 5 237ndash265 (doi10

                        1023A1020512529767)89 Galliari F C Carlini A A amp Sanchez-Villagra M R

                        2010 Evolution of the axial skeleton in armadillos(Mammalia Dasypodidae) Mamm Biol 75 326ndash333 (doi101016jmambio200903014)

                        90 Poljak S Confalonieri V Fasanella M Gabrielli Mamp Lizarralde M S 2010 Phylogeography of the arma-dillo Chaetophractus villosus (Dasypodidae Xenarthra)post-glacial range expansion from Pampas to Patagonia

                        (Argentina) Mol Phylogenet Evol 55 38ndash46 (doi101016jympev200912021)

                        91 Sige B Crochet J-Y amp Insole A 1977 Les plusvielles taupes Geobios Mem Spec 1 141ndash157(doi101016S0016-6995(77)80014-4)

                        92 Gunnell G F Bown T M Hutchinson J H ampBloch J I 2008 Lipotyphla In Evolution of Tertiarymammals of North America small mammals xenarthransand marine mammals vol 2 (eds C M Janis G FGunnell amp M D Uhen) pp 89ndash125 Cambridge

                        UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

                        amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

                        94 Tabuce R Asher R J amp Lehmann T 2008 Afrother-ian mammals a review of current data Mammalia 722ndash14 (doi101515MAMM2008004)

                        Mammalian historical biogeography M S Springer et al 2499

                        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                        95 Butler P M 1995 Fossil Macroscelidea Mammal Rev25 3ndash14 (doi101111j1365-29071995tb00432x)

                        96 Milledge S 2003 Fossil aardvarks from the Lothagam

                        beds In Lothagam the dawn of humanity in EasternAfrica (eds J Leakey amp J Harris) pp 363ndash368New York NY Columbia University Press

                        97 Flynn L J amp Jacobs L L 2008 Aplodontia In Evol-ution of tertiary mammals of North America smallmammals xenarthrans and marine mammals vol 2(eds C M Janis G F Gunnell amp M D Uhen) pp377ndash390 Cambridge UK Cambridge UniversityPress

                        98 Marivaux L Ducrocq S Jaeger J-J Marandat BSudre J Chaimanee Y Tun S T Htoon W ampSoe A N 2005 New remains of Pondaungimysanomaluropsis (Rodentia Anomaluroidea) from thelatest middle Eocene Pondaung Formation of

                        Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

                        99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

                        100 Antoine P-O et al 2007 The middle Miocene (Laven-

                        tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

                        Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

                        Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

                        (doi1016710272-4634(2007)27[683OADOTO]20CO2)

                        102 Frailey C D amp Campbell K E 2004 The rodents ofthe Santa Rosa Local Fauna In The Paleogene mamma-lian fauna of Santa Rosa Amazonian Peru (ed K E

                        Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

                        103 Martin T 2004 Evolution of incisor enamel micro-structure in Lagomorpha J Vertebr Paleontol 24

                        411ndash426 (doi1016712513)104 Lopez-Martinez N 2008 The lagomorph fossil

                        record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

                        105 Marivaux L Bocat L Chaimanee Y Jaeger J-JMarandat B Srisuk P Tafforeau P Yamee C ampWelcomme L 2006 Cynocephalid dermopterans

                        from the Palaeogene of South Asia (Thailand Myan-mar and Pakistan) systematic evolutionary andpalaeobiogeographic implications Zool Scripta 35395ndash420 (doi101111j1463-6409200600235x)

                        106 Tong Y 1988 Fossil tree shrews from the Eocene

                        Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

                        107 Godfrey L R amp Jungers W L 2002 Quaternary fossillemurs In The primate fossil record (ed W C Hartwig)pp 97ndash121 Cambridge UK Cambridge University

                        Press108 Bajpai S Kay R F Williams B A Das D P

                        Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

                        Phil Trans R Soc B (2011)

                        109 Beard K C Qi T Dawson M R Wang B amp Li C1994 A diverse new primate fauna from middle Eocenefissure-fillings in southeastern China Nature 368

                        604ndash609 (doi101038368604a0)110 Orliac M Boisserie J-R MacLatchy L amp Lihoreau

                        F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

                        111 Honey J G Harrison J A Prothero D R ampStevens M S 1998 Camelidae In Evolution of Tertiarymammals of North America terrestrial carnivoresungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp439ndash462 Cambridge UK Cambridge University Press

                        112 Metais G amp Vislobokova I 2008 Basal ruminants In

                        The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

                        113 Harris J M amp Li-Ping L 2008 Superfamily SuoideaIn The evolution of artiodactyls (eds D R Prothero amp S

                        E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

                        114 Bowen G J Clyde W C Koch P L Ting SAlroy J Tsubamoto T Wang Y amp Wang Y 2002Mammalian dispersal at the PaleoceneEocene bound-

                        ary Science 295 2062ndash2065 (doi101126science1068700)

                        115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

                        earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

                        116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

                        117 Colbert M W amp Schoch R M 1998 Tapiroidea and

                        other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

                        118 Dashzeveg D 1996 Some carnivorous mammals fromthe Paleogene of the Eastern Gobi Desert Mongoliaand the application of Oligocene carnivores to strati-graphic correlation Am Mus Novit 3179 1ndash14

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                        120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

                        cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

                        121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

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                        123 Ronquist F amp Huelsenbeck J P 2003 MrBayes 3Bayesian phylogenetic inference under mixed modelsBioinformatics 19 1572ndash1574 (doi101093bioinfor-maticsbtg180)

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                        Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

                        126 Zack S P Penkrot T A Bloch J I amp Rose K D

                        2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

                        127 Tabuce R Marivaux L Adaci M Bensalah M

                        Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

                        128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

                        129 Simpson G G 1951 History of the fauna of Latin

                        America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

                        130 Simpson G G 1978 Early mammals in South Amer-ica fact controversy and mystery Proc Am PhilSoc 122 318ndash328

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                        132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

                        133 Cifelli R L amp Davis B M 2003 Marsupial origins

                        Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

                        2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

                        135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

                        eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

                        136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

                        pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

                        W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

                        260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

                        N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

                        139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

                        Phil Trans R Soc B (2011)

                        140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

                        141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

                        0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

                        roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

                        of mammals Proc Natl Acad Sci USA 106 5235ndash5240

                        143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

                        144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

                        145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

                        146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

                        73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

                        dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

                        148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

                        108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

                        dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                        37091305110239)150 McCall R 1997 Implications of recent geological

                        investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

                        151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

                        152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

                        153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

                        154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

                        155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

                        caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

                        156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

                        Mammalian historical biogeography M S Springer et al 2501

                        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                        revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

                        157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

                        158 Rowe D L Dunn K A Adkins R M amp Honeycutt

                        R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

                        159 Beard K C Wang B Dawson M Huang X amp

                        Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

                        160 Beard K C amp Wang J 2004 The eosimiid primates

                        (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

                        161 Arnason U Gullberg A Schweizer B A amp Janke A

                        2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

                        162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

                        163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

                        164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

                        513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

                        ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

                        AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

                        diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

                        167 Gunnell G F amp Simmons N B 2005 Fossil evidence

                        and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                        168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                        Wyoming and the evolution of flight and echolocationNature 451 818ndash822

                        169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

                        paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                        170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

                        171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

                        ian evolution Science 302 1934ndash1939 (doi101126science1090718)

                        172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

                        Phil Trans R Soc B (2011)

                        dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                        173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

                        D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

                        174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

                        from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                        175 Cifelli R L 1993 Theria of metatherianndasheutherian

                        grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                        176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                        177 Wible J R 1990 Late Cretaceous marsupial petrosal

                        bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                        178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                        pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                        179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                        of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                        180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                        2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                        181 Beck R M Godthelp H Weisbecker V Archer M

                        amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                        182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                        Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                        183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                        for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                        184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                        implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                        185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                        phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                        186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                        marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                        187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                        2502 M S Springer et al Mammalian historical biogeography

                        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                        mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                        188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                        189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                        190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                        Phil Trans R Soc B (2011)

                        Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                        191 Springer M S amp Krajewski C 2009 Monotremes

                        (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                        192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                        53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                        In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                        194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                        • The historical biogeography of Mammalia
                          • Introduction
                          • Phylogeny reconstruction
                          • Molecular dating analyses
                          • Ancestral area reconstruction
                          • Box 1
                          • Ancestral area chronograms and palaeogeography
                          • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                          • Placental biogeography
                          • The importance of dispersal
                          • Bat biogeography
                          • Marsupial biogeography
                          • Monotreme biogeography
                          • Conclusions
                          • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
                          • REFERENCES

                          Tab

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                          (Con

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                          Mammalian historical biogeography M S Springer et al 2489

                          Phil Trans R Soc B (2011)

                          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                          Tab

                          le4

                          (Con

                          tinued

                          )

                          clad

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                          22

                          0010

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                          00

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                          37

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                          300

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                          avio

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                          38

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                          0001

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                          00

                          0

                          00

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                          09

                          900

                          0

                          00

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                          0

                          10

                          000

                          0

                          00

                          0

                          00

                          0

                          10

                          0

                          mou

                          se-r

                          elat

                          edcl

                          ad

                          e39

                          0000

                          1000

                          1000

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                          0100

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                          41

                          0000

                          1000

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                          9

                          00

                          000

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                          2

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                          0100

                          0100

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                          40

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                          00

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                          0

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                          8

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                          000

                          0

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                          1

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                          9

                          00

                          000

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                          00

                          0

                          09

                          9

                          00

                          000

                          0

                          00

                          1

                          09

                          9

                          00

                          0M

                          uri

                          dae

                          42

                          0100

                          0100

                          0100

                          0100

                          0100

                          00

                          0

                          09

                          7

                          00

                          0

                          00

                          000

                          0

                          09

                          4

                          00

                          0

                          00

                          000

                          0

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                          1

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                          1

                          00

                          0

                          2490 M S Springer et al Mammalian historical biogeography

                          Phil Trans R Soc B (2011)

                          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                          Table 5 Comparison of different methods for reconstructing ancestral areas NA1 not applicable for monomorphic

                          reconstruction methods NA2 not applicable when the maximum number of areas is set at two NA2 not applicable formethods that employ single multistate charactersa

                          FP-MBC FP-SMCMACParsimony DIVA DIVA-2 DEC DEC-2 SM-MBC SM-SMC

                          nodes with ambiguous 75 129 128 1211 107 2323 2623 1617 614reconstructionsb 1920 1718 1012 410

                          nodes with 2 areasc 33 NA1 46 1618 1516 1820 2019 77 NA11720 1717 46

                          nodes with 3 areasd 00 NA1 00 65 NA2 66 NA2 00 NA145 00

                          empty nodese 95 NA3 NA3 NA3 NA3 NA3 NA3 34 NA344

                          aNumbers before slashes are based on analyses with area coding for extant taxa and numbers after slashes are based on analyses with areacoding for the oldest fossil See table 3 for abbreviationsbFor FP-MBC nodes were considered ambiguous if at least one area was reconstructed as (01) For SM-MBC and SM-SMC nodes wereconsidered ambiguous if the posterior probability (PP) of at least one area was 01 PP 09 (top line) or 02 PP 08 (bottom line)For DEC and DEC-2 nodes were considered ambiguous if the frequency ( f ) of at least one area was 01 f 09 (top line) or 02 p 08 (bottom line)cAt least two areas in at least one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) was takento include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line) or020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02 (bottomline)dAt least three areas in more than one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) wastaken to include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line)or 020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02(bottom line)eFor FP-MBC nodes were considered empty if all areas were reconstructed as 0 For SM-MBC nodes were considered empty if posteriorprobabilities were 010 (top line) or 020 (bottom line) for all four areas

                          Mammalian historical biogeography M S Springer et al 2491

                          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                          Eurasia throughout the Cretaceous but were absentfrom North America through much of the Late Cre-taceous and only attained appreciable diversity thereduring the last approximately 10 Myr of the period[133134] Boyer et al [135] concluded that theIndian subcontinent Eurasia and Africa are morelikely places of origin for Euarchonta than is NorthAmerica This agrees with our ancestral areareconstructions (figures 3 4 and tables 3 4)

                          Although there is robust support for the monophylyof Xenarthra Afrotheria and Boreoeutheria relation-ships among these three groups and the root of theplacental tree remain contentious [105460ndash63136]Murphy et al [62] and Springer et al [10] suggested acausal relationship between the sundering of Africa andSouth America and basal cladogenesis among crown-group placental mammals given the coincidence ofmolecular dates for the base of placentals and thevicariant separation of Africa and South Americaapproximately 100ndash120 Ma

                          Asher et al [125] analysed a combined matrix andrecovered Afrotheria in a nested position within Pla-centalia which contradicts the hypothesis that theplate tectonic separation of Africa and South Americaplayed a causal role in the early cladogenesis of placen-tal mammals However the nested position forAfrotheria resulted from the paraphyly of Euarchonto-glires Glires and Rodentia Rare genomic changesconfirm the monophyly of Xenarthra [137] Afrotheria[138ndash142] Euarchontoglires [139141142] Laura-siatheria [139141142] and Boreoeutheria[139141142] and preclude a nested position forAfrotheria in the placental tree

                          Rare genomic changes have also been used toexamine the position of the placental root Kriegs

                          Phil Trans R Soc B (2011)

                          et al [139] reported LINE insertions that are sharedby Epitheria whereas Murphy et al [16] discoveredrare genomic changes that support AtlantogenataNishihara et al [142] performed genome-wide retro-poson analyses and found 22 25 and 21 LINEinsertions for Exafroplacentalia Epitheria and Atlan-togenata respectively Based on these resultsNishihara et al [142] concluded that XenarthraAfrotheria and Boreoeutheria diverged from oneanother nearly simultaneously They also suggested anew palaeogeographical model for the breakup of Pan-gaea and Gondwana in which Africa becomes isolatedfrom both South America and Laurasia at approxi-mately 120 Ma and argued that these coeval platetectonic events provide an explanation for the simul-taneous divergence of Afrotheria Xenarthra andBoreoeutheria However relaxed clock dates for thebase of Placentalia are closer to 100 Ma than to120 Ma (figures 3 and 4) A second difficulty concernsthe opening of the South Atlantic Nishihara et al[142] suggested that the Brazilian Bridge which rep-resented the last connection between Africa andSouth America was severed at approximately120 Mya but other recent reconstructions suggestthat the connection between the South Atlantic andCentral Atlantic was not established until lateAptianmid-Albian times (approx 110ndash100 Ma)[143144]

                          8 THE IMPORTANCE OF DISPERSALIn the context of pre-plate tectonic views of theEarth Simpson [2] proposed three types ofmigration routes to describe the movement of ani-mals corridors filter bridges and sweepstakes

                          Africa

                          Mad

                          agas

                          car

                          Tanzania

                          Mozambique

                          N

                          100 mi

                          Figure 5 Present day surface ocean currents in the Mozam-bique Channel (solid arrows) are southndashsouthwest andwould not have facilitated west to east transoceanic dispersalfrom Africa to Madagascar [153] By contrast westerly sur-face ocean currents in the Eocene (dashed arrows) would

                          have facilitated dispersal across the Mozambique Channelfrom Africa to Madagascar especially during tropicalstorms [154] The outline of Madagascar with dashed linesshows its approximate position relative to Africa during theEocene

                          2492 M S Springer et al Mammalian historical biogeography

                          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                          dispersal Corridors connect two areas and are per-meable to all animals filter bridges impose selectivebarriers that affect some but not all animals andsweepstakes dispersal is required when there arestrong barriers to migration such as high mountainbarriers or oceans

                          Simpson [2] suggested that Madagascarrsquos livingmammals were the product of sweepstakes dispersalfrom Africa to Madagascar Sweepstakes dispersalhypotheses fell out of favour with the validation ofplate tectonic theory and were summarily dismissedas lsquomiraculousrsquo hypotheses with no scientific basis[145] However it has become apparent that some dis-tributional patterns can only be explained bysweepstakes dispersal [146] Observational data alsoprovide support for long-distance vertebrate dispersal[147] Examples of low probability sweepstakes disper-sal involving mammals include the origins of theendemic mammal fauna in Madagascar and theoccurrence of caviomorph rodents and platyrrhine pri-mates in South America

                          Madagascarrsquos strictly terrestrial extant mammal faunaincludes endemic lineages from four placental orderstenrecs (Afrosoricida) euplerids (Carnivora) neso-myines (Rodentia) and lemurs (Primates) In eachlineage Madagascar endemics comprise monophyleticassemblages with closest living relatives in Africa[148149] Madagascar separated from Africa approxi-mately 165 Ma but maintained its connection withAntarctica via the Kerguelen Plateau until as late as80 Ma at which time it became permanentlyseparated from other Gondwanan landmasses This his-tory suggests that Madagascarrsquos terrestrial endemicmammals are either the ancient descendants of vicariantevents that occurred prior to 80 Ma or reached Mada-gascar via transoceanic sweepstakes dispersal at a latertime Another possibility is that a land bridge connectedAfrica and Madagascar between 45 and 26 Ma [150]

                          Molecular divergence dates suggest that all fourendemic lineages last shared a common ancestorwith their African sister group in the Cenozoic[148149151152] Poux et al [148] concluded thatdispersal by lemurs rodents and carnivorans musthave occurred by transoceanic dispersal rather thanland bridge dispersal based on molecular dates forthe colonization of Madagascar that were outside ofthe land bridge window ie 60ndash50 Ma for lemurs26ndash19 Ma for carnivorans and 24ndash20 Ma for rodentsHowever present ocean currents allow for dispersalfrom Madagascar to Africa but oppose reciprocal dis-persal from Africa to Madagascar across theMozambique Channel If ocean currents were thesame for most of the Cenozoic as they are todaythey would not have facilitated west to east transocea-nic dispersal across the Mozambique Channel becauseof the strong southndashsouthwest flow of the Mozambi-que Current [153]

                          Ali amp Huber [154] addressed this problem by simu-lating surface ocean currents in the Indian Oceanduring the Eocene They concluded that large-scaleocean current systems in the Eocene were profoundlydifferent from modern observed circulatory patternsand that the flow along the African coast was eastwardtowards Madagascar instead of southward through the

                          Phil Trans R Soc B (2011)

                          Mozambique Channel (figure 5) Ali amp Huber [154]further suggested that dispersal probabilities wereenhanced by tropical storms that (i) generated largefloating tree islands that would have allowed for asuccessful oceanic voyage and (ii) acceleratedtransportation rates from Africa to Madagascar thatwould have allowed for complete crossing of theMozambique Channel in 25ndash30 days

                          The dispersal of four groups of fully terrestrialmammals from Africa to Madagascar at a time whenthere was no land bridge is a testament to the impor-tance of rare sweepstakes events in the evolutionaryhistory of Placentalia Even more remarkable is theoccurrence of two different groups of placental mam-mals hystricognath rodents and anthropoid primatesin Africa and South America

                          Hystricognathi includes Hystricidae (Old World por-cupines) and Phiomorpha (eg cane rats dassie rats)from the Old World and Caviomorpha (eg porcupineschinchillas) from the New World The oldest hystricog-naths are from the late Eocene Egypt and have beendated at approximately 37 Ma [81] Old World hystri-cognaths are paraphyletic usually with phiomorphshaving closer phylogenetic affinities to South Americancaviomorphs than to hystricids [14155156] Relaxedclock dates suggest that South American caviomorphslast shared a common ancestor with phiomorphsbetween 45 and 36 Ma [81155157] The most recentcommon ancestor of Caviomorpha has been dated at45ndash31 Ma [81155157158]

                          PacificOcean

                          NorthAtlanticOcean

                          SouthAtlantic Ocean

                          IndianOcean

                          NorthAmerica

                          SouthAmerica

                          Africa

                          Antarctica

                          Australia

                          Asia

                          Europe

                          PacificOcean1b

                          1b

                          1a3

                          2

                          Middle Eocene

                          Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

                          South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

                          Mammalian historical biogeography M S Springer et al 2493

                          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                          Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

                          The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

                          Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

                          Phil Trans R Soc B (2011)

                          phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

                          9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

                          The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

                          Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

                          or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

                          node number (figure 7) Eick et al [12] re-analysis

                          1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

                          ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

                          3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

                          4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

                          9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

                          10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

                          11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

                          12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

                          ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

                          13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

                          ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

                          BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

                          14 A A B C AC BC ABC15 A A B C AC BC

                          16 A A B C17 A A B AC BC ABC

                          2494 M S Springer et al Mammalian historical biogeography

                          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                          and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

                          We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

                          Phil Trans R Soc B (2011)

                          Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

                          FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

                          1

                          2

                          3

                          4

                          56

                          7

                          8

                          9

                          10

                          11

                          1213

                          14

                          1516

                          17

                          EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

                          Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

                          Mammalian historical biogeography M S Springer et al 2495

                          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                          with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

                          10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

                          In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

                          Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

                          Phil Trans R Soc B (2011)

                          sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

                          In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

                          11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

                          In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

                          With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

                          12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

                          2496 M S Springer et al Mammalian historical biogeography

                          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                          together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

                          MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

                          REFERENCES1 Jones K E amp Safi K 2011 Ecology and evolution of

                          mammalian biodiversity Phil Trans R Soc B 366

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                          J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

                          Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

                          4 Springer M S Meredith R W Eizirik E Teeling

                          E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

                          5 Bollback J P 2006 SIMMAP stochastic charactermapping of discrete traits on phylogenies BMC Bioin-form 7 88 (doi1011861471-2105-7-88)

                          6 Drummond A J Ho S Y W Phillips M J amp Ram-baut A 2006 Relaxed phylogenetics and dating withconfidence PLoS Biol 4 e88 (doi101371journalpbio0040088)

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                          9 Douady C J Catzeflis F Raman J Springer M S

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                          0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

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                          Phil Trans R Soc B (2011)

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                          13 Teeling E C Springer M S Madsen O Bates POrsquoBrien S J amp Murphy W J 2005 A molecular phy-logeny for bats illuminates biogeography and the fossil

                          record Science 307 580ndash584 (doi101126science1105113)

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                          15 Janecka J E Miller W Pringle T H Wiens FZitzmann A Helgen K M Springer M S amp

                          Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

                          16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

                          the root of the placental mammal tree Genome Res 17413ndash421 (doi101101gr5918807)

                          17 Beck R M 2008 A dated phylogeny of marsupialsusing a molecular supermatrix and multiple fossil con-straints J Mammal 89 175ndash189 (doi10164406-

                          MAMM-A-4371)18 Meredith R W Westerman M amp Springer M S

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                          nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

                          19 Meredith R W Westerman M amp Springer M S2008 Phylogeny and timescale for the living genera ofkangaroos and kin (Macropodiformes Marsupialia)

                          based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

                          20 Meredith R W Westerman M amp Springer M S 2009A phylogeny of Diprotodontia (Marsupialia) based onsequences for five nuclear genes Mol Phylogenet Evol51 554ndash571 (doi101016jympev200902009)

                          21 Meredith R W Krajewski C Westerman W ampSpringer M S 2009 Relationships and divergencetimes among the orders and families of marsupialsMus N Ariz Bull 65 383ndash406

                          22 Chatterjee H J Ho S W Y Barnes I amp Groves C2009 Estimating the phylogeny and divergence times ofprimates using a supermatrix approach BMC EvolBiol 9 259 (doi1011861471-2148-9-259)

                          23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

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                          estimating divergence times in the absence of rate con-stancy Mol Biol Evol 14 1218ndash1231

                          25 Sanderson M J 2002 Estimating absolute rates of mol-

                          ecular evolution and divergence times a penalizedlikelihood approach Mol Biol Evol 19 101ndash109

                          26 Thorne J L amp Kishino H 2002 Divergence time andevolutionary rate estimation with multilocus data SystBiol 51 689ndash702 (doi10108010635150290102456)

                          27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

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                          28 Battistuzzi F U Filipski A Hedges S B amp KumarS 2010 Performance of relaxed-clock methods in esti-mating evolutionary divergence times and their

                          credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

                          29 Brown R P amp Yang Z 2010 Bayesian dating of shal-low phylogenies with a relaxed molecular clock SystBiol 59 119ndash131 (doi101093sysbiosyp082)

                          30 Inoue J Donoghue P C J amp Yang Z 2010 Theimpact of the representation of fossil calibrations onBayesian estimation of species divergence times SystBiol 59 74ndash89 (doi101093sysbiosyp078)

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                          32 Simpson G G 1965 The geography of evolution collectedessays PhiladelphiaNew York PANY Chilton Books

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                          34 Wen J Xiang Q-Y Qian H Li J Want X-W amp

                          Ickert-Bond S M Intercontinental and intracontinen-tal biogeographymdashpatterns and methods J Syst Evol4 327ndash329

                          35 Nylander J A A Olsson U Alstrom P amp Sanmar-tın I 2008 Accounting for phylogenetic uncertainty

                          in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

                          36 Ree R H Moore B R Webb C O amp Donoghue

                          M J 2005 A likelihood framework for inferring theevolution of geographic range on phylogenetic treesEvolution 59 2299ndash2311

                          37 Ree R H amp Smith S A 2008 Maximum likelihoodinference of geographic range evolution by dispersal

                          local extinction and cladogenesis Syst Biol 57 4ndash14 (doi10108010635150701883881)

                          38 Hardy C R amp Linder H P 2005 Intraspecific varia-bility and timing in ancestral ecology reconstruction atest case from the Cape flora Syst Biol 54 299ndash316

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                          version 3 analysis of phylogeny and character evolutionSunderland MA Sinauer Associates

                          40 Clark J R Ree R H Alfaro M E King M G

                          Wagner W L amp Roalson E H 2008 A comparativestudy in ancestral range reconstruction methodsretracing the uncertain histories of insular lineagesSyst Biol 57 693ndash707 (doi101080106351508

                          02426473)41 Patterson C 1982 Morphological characters and hom-

                          ology In Problems of phylogenetic reconstruction (eds K AJoysey amp A E Friday) pp 21ndash74 London UK Aca-demic Press

                          42 Ree R H amp Sanmartın I 2009 Prospects and chal-lenges for parametric models in historicalbiogeographical inference J Biogeogr 36 1211ndash1220(doi101111j1365-2699200802068x)

                          43 Lamm K S amp Redelings B D 2009 Reconstructing

                          ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

                          44 Maddison W P amp Maddison D R 2009 Mesquite amodular system for evolutionary analysis version 272See httpmesquiteprojectorg

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                          Phil Trans R Soc B (2011)

                          46 Lim B K 2008 Historical biogeography of New Worldemballonurid bats (Tribe Diclidurini) taxon pulsediversification J Biogeogr 35 1385ndash1401 (doi10

                          1111j1365-2699200801888x)47 Lim B K 2009 Review of the origins and biogeogra-

                          phy of bats in South America Chiroptera Neotropical15 391ndash410

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                          grative historical biogeography J Int Comp Biol 43261ndash270 (doi101093icb432261)

                          49 Krause D W OrsquoConnor P M Rogers K C Samp-son S D Buckley G A amp Rogers R R 2006 Late

                          Cretaceous terrestrial vertebrates from Madagascarimplications for Latin American biogeography AnnMo Bot Gard 93 178ndash208 (doi1034170026-6493(2006)93[178LCTVFM]20CO2)

                          50 Sereno P C Wilson J A amp Conrad J L 2004 New

                          dinosaurs link southern landmasses in the Mid-Cretac-eous Proc R Soc Lond B 271 1325ndash1330 (doi101098rspb20042692)

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                          356121a0)52 Novacek M J 1993 Reflections on higher mammalian

                          phylogenetics J Mamm Evol 1 1064ndash755453 Springer M S Cleven G C Madsen O de Jong

                          W W Waddell V G Amrine H M amp Stanhope

                          M J 1997 Endemic African mammals shake the phylo-genetic tree Nature 388 61ndash64 (doi10103840386)

                          54 Springer M S Murphy W J Eizirik E amp OrsquoBrienS J 2005 Molecular evidence for major placental

                          clades In The rise of placental mammals origins andrelationships of the major extant clades (eds K D Roseamp J D Archibald) pp 37ndash49 Baltimore MD JohnsHopkins University Press

                          55 Stanhope M J Madsen O Waddell V G Cleven

                          G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

                          56 Stanhope M J Waddell V G Madsen O de Jong

                          W W Hedges S B Cleven G C Kao D ampSpringer M S 1998 Molecular evidence for multipleorigins of Insectivora and for a new order of endemicAfrican insectivore mammals Proc Natl Acad SciUSA 95 9967ndash9972 (doi101073pnas95179967)

                          57 Waddell P Okada N amp Hasegawa M 1999 Towardsresolving the interordinal relationships of placentalmammals Syst Biol 48 1ndash5 (doi101093sysbio4811)

                          58 Waddell P J Kishino H amp Ota R 2001 A phyloge-netic foundation for comparative mammaliangenomics Genome Inform 12 141ndash154

                          59 Eizirik E Murphy W J amp OrsquoBrien S J 2001 Mol-ecular dating and biogeography of the early placental

                          mammal radiation J Hered 92 212ndash219 (doi101093jhered922212)

                          60 Madsen O et al 2001 Parallel adaptive radiations intwo major clades of placental mammals Nature 409610ndash614 (doi10103835054544)

                          61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

                          62 Murphy W J et al 2001 Resolution of the early placen-

                          tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

                          63 Scally M Madsen O Douady C J de Jong W WStanhope M J amp Springer M S 2001 Molecular

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                          evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

                          64 Springer M S amp de Jong W W 2001 Which mamma-lian supertree to bark up Science 291 1709ndash1711

                          65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

                          (doi101093bioinformaticsbtl446)66 Benton M J amp Donoghue P C J 2007 Paleontologi-

                          cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

                          67 Reisz R R amp Muller J 2004 Molecular timescales andthe fossil record a paleontological perspective TrendsGenet 20 237ndash241 (doi101016jtig200403007)

                          68 Muller J amp Reisz R R 2005 Four well-constrainedcalibration points from the vertebrate fossil record for

                          molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

                          69 Gradstein F M amp Ogg J G 2009 The geologic timescale In The timetree of life (eds S B Hedges amp SKumar) pp 26ndash34 Oxford UK Oxford University Press

                          70 Gheerbrant E 2009 Paleocene emergence of elephantrelatives and the rapid radiation of African ungulatesProc Natl Acad Sci USA 106 10717ndash10721(doi101073pnas0900251106)

                          71 Bergqvist L P Abrantes E A L amp Avilla L D S

                          2004 The Xenarthra (Mammalia) of Sao Jose de Ita-boraı Basin (upper Paleocene Itaboraian) Rio deJaneiro Brazil Geodiversitas 26 323ndash337

                          72 Carlini A A Pascual R Reguero M A Scillato-

                          Yane G J Tonni E P amp Vizcaıno S F 1990 Thefirst Paleogene land placental mammal from Antarcticaits paleoclimatic and paleobiogeographical bearings InAbstracts IV International Congress of Systematic and Evol-utionary Biology (eds B Cox amp J Reveal) 325 p

                          Baltimore MD University of Maryland73 Vizcaıno S F amp Scillato-Yane G J 1995 An Eocene

                          Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

                          74 Benton M J Donoghue P C J amp Asher R J 2009

                          Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

                          75 Flynn J J 1996 Carnivoran phylogeny and rates ofevolution morphological taxonomic and molecular

                          In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

                          76 Hunt Jr R M amp Tedford R H 1993 Phylogenetic

                          relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

                          77 Wesley-Hunt G D amp Flynn J J 2005 Phylogeny ofthe Carnivora basal relationships among the carnivora-morphans and assessment of the position oflsquoMiacoidearsquo relative to Carnivora J Syst Palaeontol 31ndash28 (doi101017S1477201904001518)

                          78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

                          79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

                          Phil Trans R Soc B (2011)

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                          American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

                          84 Flynn L J amp Jacobs L L 2008 Castoridea In Evolution oftertiary mammals of North America small mammals xenar-thrans and marine mammals (eds C M Janis G F

                          Gunnell amp M D Uhen) vol 2 pp 391ndash405 CambridgeUK Cambridge University Press

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                          implications Antarctic Sci 6 3ndash15 (doi101017S0954102094000027)

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                          Xenarthra Mammalia) from La Meseta FormationSeymour Island West Antarctica Am Mus Novit3689 1ndash21 (doi1012067031)

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                          (Argentina) Mol Phylogenet Evol 55 38ndash46 (doi101016jympev200912021)

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                          UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

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                          Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

                          99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

                          100 Antoine P-O et al 2007 The middle Miocene (Laven-

                          tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

                          Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

                          Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

                          (doi1016710272-4634(2007)27[683OADOTO]20CO2)

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                          Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

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                          record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

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                          Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

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                          Press108 Bajpai S Kay R F Williams B A Das D P

                          Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

                          Phil Trans R Soc B (2011)

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                          F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

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                          The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

                          113 Harris J M amp Li-Ping L 2008 Superfamily SuoideaIn The evolution of artiodactyls (eds D R Prothero amp S

                          E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

                          114 Bowen G J Clyde W C Koch P L Ting SAlroy J Tsubamoto T Wang Y amp Wang Y 2002Mammalian dispersal at the PaleoceneEocene bound-

                          ary Science 295 2062ndash2065 (doi101126science1068700)

                          115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

                          earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

                          116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

                          117 Colbert M W amp Schoch R M 1998 Tapiroidea and

                          other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

                          118 Dashzeveg D 1996 Some carnivorous mammals fromthe Paleogene of the Eastern Gobi Desert Mongoliaand the application of Oligocene carnivores to strati-graphic correlation Am Mus Novit 3179 1ndash14

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                          120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

                          cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

                          121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

                          122 Huelsenbeck J P amp Ronquist F 2001 MrBAYESBayesian inference of phylogenetic trees Bioinformatics17 754ndash755 (doi101093bioinformatics178754)

                          123 Ronquist F amp Huelsenbeck J P 2003 MrBayes 3Bayesian phylogenetic inference under mixed modelsBioinformatics 19 1572ndash1574 (doi101093bioinfor-maticsbtg180)

                          2500 M S Springer et al Mammalian historical biogeography

                          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

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                          125 Asher R J Novacek M J amp Geisler J G 2003

                          Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

                          126 Zack S P Penkrot T A Bloch J I amp Rose K D

                          2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

                          127 Tabuce R Marivaux L Adaci M Bensalah M

                          Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

                          128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

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                          America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

                          130 Simpson G G 1978 Early mammals in South Amer-ica fact controversy and mystery Proc Am PhilSoc 122 318ndash328

                          131 Archibald J D 1996 Fossil evidence for a Late Cretac-eous origin of lsquohoofedrsquo mammals Science 272 1150ndash1153 (doi101126science27252651150)

                          132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

                          133 Cifelli R L amp Davis B M 2003 Marsupial origins

                          Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

                          2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

                          135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

                          eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

                          136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

                          pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

                          W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

                          260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

                          N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

                          139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

                          Phil Trans R Soc B (2011)

                          140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

                          141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

                          0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

                          roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

                          of mammals Proc Natl Acad Sci USA 106 5235ndash5240

                          143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

                          144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

                          145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

                          146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

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                          dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

                          148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

                          108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

                          dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                          37091305110239)150 McCall R 1997 Implications of recent geological

                          investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

                          151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

                          152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

                          153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

                          154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

                          155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

                          caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

                          156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

                          Mammalian historical biogeography M S Springer et al 2501

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                          revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

                          157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

                          158 Rowe D L Dunn K A Adkins R M amp Honeycutt

                          R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

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                          Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

                          160 Beard K C amp Wang J 2004 The eosimiid primates

                          (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

                          161 Arnason U Gullberg A Schweizer B A amp Janke A

                          2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

                          162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

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                          164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

                          513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

                          ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

                          AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

                          diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

                          167 Gunnell G F amp Simmons N B 2005 Fossil evidence

                          and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                          168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                          Wyoming and the evolution of flight and echolocationNature 451 818ndash822

                          169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

                          paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                          170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

                          171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

                          ian evolution Science 302 1934ndash1939 (doi101126science1090718)

                          172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

                          Phil Trans R Soc B (2011)

                          dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                          173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

                          D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

                          174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

                          from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                          175 Cifelli R L 1993 Theria of metatherianndasheutherian

                          grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                          176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                          177 Wible J R 1990 Late Cretaceous marsupial petrosal

                          bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                          178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                          pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                          179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                          of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                          180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                          2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                          181 Beck R M Godthelp H Weisbecker V Archer M

                          amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                          182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                          Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                          183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                          for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                          184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                          implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                          185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                          phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                          186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                          marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                          187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                          2502 M S Springer et al Mammalian historical biogeography

                          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                          mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                          188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                          189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                          190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                          Phil Trans R Soc B (2011)

                          Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                          191 Springer M S amp Krajewski C 2009 Monotremes

                          (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                          192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                          53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                          In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                          194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                          • The historical biogeography of Mammalia
                            • Introduction
                            • Phylogeny reconstruction
                            • Molecular dating analyses
                            • Ancestral area reconstruction
                            • Box 1
                            • Ancestral area chronograms and palaeogeography
                            • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                            • Placental biogeography
                            • The importance of dispersal
                            • Bat biogeography
                            • Marsupial biogeography
                            • Monotreme biogeography
                            • Conclusions
                            • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
                            • REFERENCES

                            Tab

                            le4

                            (Con

                            tinued

                            )

                            clad

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                            nod

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                            o

                            (figu

                            re4)

                            FP

                            -MB

                            CF

                            P-S

                            MC

                            MA

                            CD

                            IVA

                            DIV

                            A-2

                            DE

                            CD

                            EC

                            -2S

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                            avio

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                            38

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                            0001

                            00

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                            10

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                            00

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                            00

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                            10

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                            mou

                            se-r

                            elat

                            edcl

                            ad

                            e39

                            0000

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                            41

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                            Cast

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                            morp

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                            40

                            0010

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                            0010

                            0010

                            0010

                            00

                            0

                            00

                            0

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                            8

                            00

                            000

                            0

                            03

                            1

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                            0

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                            9

                            00

                            000

                            0

                            00

                            1

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                            9

                            00

                            0M

                            uri

                            dae

                            42

                            0100

                            0100

                            0100

                            0100

                            0100

                            00

                            0

                            09

                            7

                            00

                            0

                            00

                            000

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                            4

                            00

                            0

                            00

                            000

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                            1

                            00

                            0

                            2490 M S Springer et al Mammalian historical biogeography

                            Phil Trans R Soc B (2011)

                            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                            Table 5 Comparison of different methods for reconstructing ancestral areas NA1 not applicable for monomorphic

                            reconstruction methods NA2 not applicable when the maximum number of areas is set at two NA2 not applicable formethods that employ single multistate charactersa

                            FP-MBC FP-SMCMACParsimony DIVA DIVA-2 DEC DEC-2 SM-MBC SM-SMC

                            nodes with ambiguous 75 129 128 1211 107 2323 2623 1617 614reconstructionsb 1920 1718 1012 410

                            nodes with 2 areasc 33 NA1 46 1618 1516 1820 2019 77 NA11720 1717 46

                            nodes with 3 areasd 00 NA1 00 65 NA2 66 NA2 00 NA145 00

                            empty nodese 95 NA3 NA3 NA3 NA3 NA3 NA3 34 NA344

                            aNumbers before slashes are based on analyses with area coding for extant taxa and numbers after slashes are based on analyses with areacoding for the oldest fossil See table 3 for abbreviationsbFor FP-MBC nodes were considered ambiguous if at least one area was reconstructed as (01) For SM-MBC and SM-SMC nodes wereconsidered ambiguous if the posterior probability (PP) of at least one area was 01 PP 09 (top line) or 02 PP 08 (bottom line)For DEC and DEC-2 nodes were considered ambiguous if the frequency ( f ) of at least one area was 01 f 09 (top line) or 02 p 08 (bottom line)cAt least two areas in at least one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) was takento include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line) or020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02 (bottomline)dAt least three areas in more than one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) wastaken to include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line)or 020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02(bottom line)eFor FP-MBC nodes were considered empty if all areas were reconstructed as 0 For SM-MBC nodes were considered empty if posteriorprobabilities were 010 (top line) or 020 (bottom line) for all four areas

                            Mammalian historical biogeography M S Springer et al 2491

                            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                            Eurasia throughout the Cretaceous but were absentfrom North America through much of the Late Cre-taceous and only attained appreciable diversity thereduring the last approximately 10 Myr of the period[133134] Boyer et al [135] concluded that theIndian subcontinent Eurasia and Africa are morelikely places of origin for Euarchonta than is NorthAmerica This agrees with our ancestral areareconstructions (figures 3 4 and tables 3 4)

                            Although there is robust support for the monophylyof Xenarthra Afrotheria and Boreoeutheria relation-ships among these three groups and the root of theplacental tree remain contentious [105460ndash63136]Murphy et al [62] and Springer et al [10] suggested acausal relationship between the sundering of Africa andSouth America and basal cladogenesis among crown-group placental mammals given the coincidence ofmolecular dates for the base of placentals and thevicariant separation of Africa and South Americaapproximately 100ndash120 Ma

                            Asher et al [125] analysed a combined matrix andrecovered Afrotheria in a nested position within Pla-centalia which contradicts the hypothesis that theplate tectonic separation of Africa and South Americaplayed a causal role in the early cladogenesis of placen-tal mammals However the nested position forAfrotheria resulted from the paraphyly of Euarchonto-glires Glires and Rodentia Rare genomic changesconfirm the monophyly of Xenarthra [137] Afrotheria[138ndash142] Euarchontoglires [139141142] Laura-siatheria [139141142] and Boreoeutheria[139141142] and preclude a nested position forAfrotheria in the placental tree

                            Rare genomic changes have also been used toexamine the position of the placental root Kriegs

                            Phil Trans R Soc B (2011)

                            et al [139] reported LINE insertions that are sharedby Epitheria whereas Murphy et al [16] discoveredrare genomic changes that support AtlantogenataNishihara et al [142] performed genome-wide retro-poson analyses and found 22 25 and 21 LINEinsertions for Exafroplacentalia Epitheria and Atlan-togenata respectively Based on these resultsNishihara et al [142] concluded that XenarthraAfrotheria and Boreoeutheria diverged from oneanother nearly simultaneously They also suggested anew palaeogeographical model for the breakup of Pan-gaea and Gondwana in which Africa becomes isolatedfrom both South America and Laurasia at approxi-mately 120 Ma and argued that these coeval platetectonic events provide an explanation for the simul-taneous divergence of Afrotheria Xenarthra andBoreoeutheria However relaxed clock dates for thebase of Placentalia are closer to 100 Ma than to120 Ma (figures 3 and 4) A second difficulty concernsthe opening of the South Atlantic Nishihara et al[142] suggested that the Brazilian Bridge which rep-resented the last connection between Africa andSouth America was severed at approximately120 Mya but other recent reconstructions suggestthat the connection between the South Atlantic andCentral Atlantic was not established until lateAptianmid-Albian times (approx 110ndash100 Ma)[143144]

                            8 THE IMPORTANCE OF DISPERSALIn the context of pre-plate tectonic views of theEarth Simpson [2] proposed three types ofmigration routes to describe the movement of ani-mals corridors filter bridges and sweepstakes

                            Africa

                            Mad

                            agas

                            car

                            Tanzania

                            Mozambique

                            N

                            100 mi

                            Figure 5 Present day surface ocean currents in the Mozam-bique Channel (solid arrows) are southndashsouthwest andwould not have facilitated west to east transoceanic dispersalfrom Africa to Madagascar [153] By contrast westerly sur-face ocean currents in the Eocene (dashed arrows) would

                            have facilitated dispersal across the Mozambique Channelfrom Africa to Madagascar especially during tropicalstorms [154] The outline of Madagascar with dashed linesshows its approximate position relative to Africa during theEocene

                            2492 M S Springer et al Mammalian historical biogeography

                            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                            dispersal Corridors connect two areas and are per-meable to all animals filter bridges impose selectivebarriers that affect some but not all animals andsweepstakes dispersal is required when there arestrong barriers to migration such as high mountainbarriers or oceans

                            Simpson [2] suggested that Madagascarrsquos livingmammals were the product of sweepstakes dispersalfrom Africa to Madagascar Sweepstakes dispersalhypotheses fell out of favour with the validation ofplate tectonic theory and were summarily dismissedas lsquomiraculousrsquo hypotheses with no scientific basis[145] However it has become apparent that some dis-tributional patterns can only be explained bysweepstakes dispersal [146] Observational data alsoprovide support for long-distance vertebrate dispersal[147] Examples of low probability sweepstakes disper-sal involving mammals include the origins of theendemic mammal fauna in Madagascar and theoccurrence of caviomorph rodents and platyrrhine pri-mates in South America

                            Madagascarrsquos strictly terrestrial extant mammal faunaincludes endemic lineages from four placental orderstenrecs (Afrosoricida) euplerids (Carnivora) neso-myines (Rodentia) and lemurs (Primates) In eachlineage Madagascar endemics comprise monophyleticassemblages with closest living relatives in Africa[148149] Madagascar separated from Africa approxi-mately 165 Ma but maintained its connection withAntarctica via the Kerguelen Plateau until as late as80 Ma at which time it became permanentlyseparated from other Gondwanan landmasses This his-tory suggests that Madagascarrsquos terrestrial endemicmammals are either the ancient descendants of vicariantevents that occurred prior to 80 Ma or reached Mada-gascar via transoceanic sweepstakes dispersal at a latertime Another possibility is that a land bridge connectedAfrica and Madagascar between 45 and 26 Ma [150]

                            Molecular divergence dates suggest that all fourendemic lineages last shared a common ancestorwith their African sister group in the Cenozoic[148149151152] Poux et al [148] concluded thatdispersal by lemurs rodents and carnivorans musthave occurred by transoceanic dispersal rather thanland bridge dispersal based on molecular dates forthe colonization of Madagascar that were outside ofthe land bridge window ie 60ndash50 Ma for lemurs26ndash19 Ma for carnivorans and 24ndash20 Ma for rodentsHowever present ocean currents allow for dispersalfrom Madagascar to Africa but oppose reciprocal dis-persal from Africa to Madagascar across theMozambique Channel If ocean currents were thesame for most of the Cenozoic as they are todaythey would not have facilitated west to east transocea-nic dispersal across the Mozambique Channel becauseof the strong southndashsouthwest flow of the Mozambi-que Current [153]

                            Ali amp Huber [154] addressed this problem by simu-lating surface ocean currents in the Indian Oceanduring the Eocene They concluded that large-scaleocean current systems in the Eocene were profoundlydifferent from modern observed circulatory patternsand that the flow along the African coast was eastwardtowards Madagascar instead of southward through the

                            Phil Trans R Soc B (2011)

                            Mozambique Channel (figure 5) Ali amp Huber [154]further suggested that dispersal probabilities wereenhanced by tropical storms that (i) generated largefloating tree islands that would have allowed for asuccessful oceanic voyage and (ii) acceleratedtransportation rates from Africa to Madagascar thatwould have allowed for complete crossing of theMozambique Channel in 25ndash30 days

                            The dispersal of four groups of fully terrestrialmammals from Africa to Madagascar at a time whenthere was no land bridge is a testament to the impor-tance of rare sweepstakes events in the evolutionaryhistory of Placentalia Even more remarkable is theoccurrence of two different groups of placental mam-mals hystricognath rodents and anthropoid primatesin Africa and South America

                            Hystricognathi includes Hystricidae (Old World por-cupines) and Phiomorpha (eg cane rats dassie rats)from the Old World and Caviomorpha (eg porcupineschinchillas) from the New World The oldest hystricog-naths are from the late Eocene Egypt and have beendated at approximately 37 Ma [81] Old World hystri-cognaths are paraphyletic usually with phiomorphshaving closer phylogenetic affinities to South Americancaviomorphs than to hystricids [14155156] Relaxedclock dates suggest that South American caviomorphslast shared a common ancestor with phiomorphsbetween 45 and 36 Ma [81155157] The most recentcommon ancestor of Caviomorpha has been dated at45ndash31 Ma [81155157158]

                            PacificOcean

                            NorthAtlanticOcean

                            SouthAtlantic Ocean

                            IndianOcean

                            NorthAmerica

                            SouthAmerica

                            Africa

                            Antarctica

                            Australia

                            Asia

                            Europe

                            PacificOcean1b

                            1b

                            1a3

                            2

                            Middle Eocene

                            Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

                            South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

                            Mammalian historical biogeography M S Springer et al 2493

                            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                            Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

                            The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

                            Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

                            Phil Trans R Soc B (2011)

                            phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

                            9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

                            The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

                            Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

                            or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

                            node number (figure 7) Eick et al [12] re-analysis

                            1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

                            ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

                            3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

                            4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

                            9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

                            10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

                            11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

                            12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

                            ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

                            13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

                            ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

                            BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

                            14 A A B C AC BC ABC15 A A B C AC BC

                            16 A A B C17 A A B AC BC ABC

                            2494 M S Springer et al Mammalian historical biogeography

                            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                            and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

                            We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

                            Phil Trans R Soc B (2011)

                            Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

                            FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

                            1

                            2

                            3

                            4

                            56

                            7

                            8

                            9

                            10

                            11

                            1213

                            14

                            1516

                            17

                            EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

                            Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

                            Mammalian historical biogeography M S Springer et al 2495

                            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                            with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

                            10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

                            In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

                            Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

                            Phil Trans R Soc B (2011)

                            sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

                            In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

                            11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

                            In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

                            With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

                            12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

                            2496 M S Springer et al Mammalian historical biogeography

                            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                            together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

                            MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

                            REFERENCES1 Jones K E amp Safi K 2011 Ecology and evolution of

                            mammalian biodiversity Phil Trans R Soc B 366

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                            J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

                            Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

                            4 Springer M S Meredith R W Eizirik E Teeling

                            E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

                            5 Bollback J P 2006 SIMMAP stochastic charactermapping of discrete traits on phylogenies BMC Bioin-form 7 88 (doi1011861471-2105-7-88)

                            6 Drummond A J Ho S Y W Phillips M J amp Ram-baut A 2006 Relaxed phylogenetics and dating withconfidence PLoS Biol 4 e88 (doi101371journalpbio0040088)

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                            9 Douady C J Catzeflis F Raman J Springer M S

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                            0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

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                            Phil Trans R Soc B (2011)

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                            13 Teeling E C Springer M S Madsen O Bates POrsquoBrien S J amp Murphy W J 2005 A molecular phy-logeny for bats illuminates biogeography and the fossil

                            record Science 307 580ndash584 (doi101126science1105113)

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                            15 Janecka J E Miller W Pringle T H Wiens FZitzmann A Helgen K M Springer M S amp

                            Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

                            16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

                            the root of the placental mammal tree Genome Res 17413ndash421 (doi101101gr5918807)

                            17 Beck R M 2008 A dated phylogeny of marsupialsusing a molecular supermatrix and multiple fossil con-straints J Mammal 89 175ndash189 (doi10164406-

                            MAMM-A-4371)18 Meredith R W Westerman M amp Springer M S

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                            nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

                            19 Meredith R W Westerman M amp Springer M S2008 Phylogeny and timescale for the living genera ofkangaroos and kin (Macropodiformes Marsupialia)

                            based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

                            20 Meredith R W Westerman M amp Springer M S 2009A phylogeny of Diprotodontia (Marsupialia) based onsequences for five nuclear genes Mol Phylogenet Evol51 554ndash571 (doi101016jympev200902009)

                            21 Meredith R W Krajewski C Westerman W ampSpringer M S 2009 Relationships and divergencetimes among the orders and families of marsupialsMus N Ariz Bull 65 383ndash406

                            22 Chatterjee H J Ho S W Y Barnes I amp Groves C2009 Estimating the phylogeny and divergence times ofprimates using a supermatrix approach BMC EvolBiol 9 259 (doi1011861471-2148-9-259)

                            23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

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                            estimating divergence times in the absence of rate con-stancy Mol Biol Evol 14 1218ndash1231

                            25 Sanderson M J 2002 Estimating absolute rates of mol-

                            ecular evolution and divergence times a penalizedlikelihood approach Mol Biol Evol 19 101ndash109

                            26 Thorne J L amp Kishino H 2002 Divergence time andevolutionary rate estimation with multilocus data SystBiol 51 689ndash702 (doi10108010635150290102456)

                            27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

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                            28 Battistuzzi F U Filipski A Hedges S B amp KumarS 2010 Performance of relaxed-clock methods in esti-mating evolutionary divergence times and their

                            credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

                            29 Brown R P amp Yang Z 2010 Bayesian dating of shal-low phylogenies with a relaxed molecular clock SystBiol 59 119ndash131 (doi101093sysbiosyp082)

                            30 Inoue J Donoghue P C J amp Yang Z 2010 Theimpact of the representation of fossil calibrations onBayesian estimation of species divergence times SystBiol 59 74ndash89 (doi101093sysbiosyp078)

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                            32 Simpson G G 1965 The geography of evolution collectedessays PhiladelphiaNew York PANY Chilton Books

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                            34 Wen J Xiang Q-Y Qian H Li J Want X-W amp

                            Ickert-Bond S M Intercontinental and intracontinen-tal biogeographymdashpatterns and methods J Syst Evol4 327ndash329

                            35 Nylander J A A Olsson U Alstrom P amp Sanmar-tın I 2008 Accounting for phylogenetic uncertainty

                            in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

                            36 Ree R H Moore B R Webb C O amp Donoghue

                            M J 2005 A likelihood framework for inferring theevolution of geographic range on phylogenetic treesEvolution 59 2299ndash2311

                            37 Ree R H amp Smith S A 2008 Maximum likelihoodinference of geographic range evolution by dispersal

                            local extinction and cladogenesis Syst Biol 57 4ndash14 (doi10108010635150701883881)

                            38 Hardy C R amp Linder H P 2005 Intraspecific varia-bility and timing in ancestral ecology reconstruction atest case from the Cape flora Syst Biol 54 299ndash316

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                            version 3 analysis of phylogeny and character evolutionSunderland MA Sinauer Associates

                            40 Clark J R Ree R H Alfaro M E King M G

                            Wagner W L amp Roalson E H 2008 A comparativestudy in ancestral range reconstruction methodsretracing the uncertain histories of insular lineagesSyst Biol 57 693ndash707 (doi101080106351508

                            02426473)41 Patterson C 1982 Morphological characters and hom-

                            ology In Problems of phylogenetic reconstruction (eds K AJoysey amp A E Friday) pp 21ndash74 London UK Aca-demic Press

                            42 Ree R H amp Sanmartın I 2009 Prospects and chal-lenges for parametric models in historicalbiogeographical inference J Biogeogr 36 1211ndash1220(doi101111j1365-2699200802068x)

                            43 Lamm K S amp Redelings B D 2009 Reconstructing

                            ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

                            44 Maddison W P amp Maddison D R 2009 Mesquite amodular system for evolutionary analysis version 272See httpmesquiteprojectorg

                            45 Wojcicki M amp Brooks D R 2005 PACT an efficientand powerful algorithm for generating area cladogramsJ Biogeogr 32 755ndash774 (doi101111j1365-2699200401148x)

                            Phil Trans R Soc B (2011)

                            46 Lim B K 2008 Historical biogeography of New Worldemballonurid bats (Tribe Diclidurini) taxon pulsediversification J Biogeogr 35 1385ndash1401 (doi10

                            1111j1365-2699200801888x)47 Lim B K 2009 Review of the origins and biogeogra-

                            phy of bats in South America Chiroptera Neotropical15 391ndash410

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                            grative historical biogeography J Int Comp Biol 43261ndash270 (doi101093icb432261)

                            49 Krause D W OrsquoConnor P M Rogers K C Samp-son S D Buckley G A amp Rogers R R 2006 Late

                            Cretaceous terrestrial vertebrates from Madagascarimplications for Latin American biogeography AnnMo Bot Gard 93 178ndash208 (doi1034170026-6493(2006)93[178LCTVFM]20CO2)

                            50 Sereno P C Wilson J A amp Conrad J L 2004 New

                            dinosaurs link southern landmasses in the Mid-Cretac-eous Proc R Soc Lond B 271 1325ndash1330 (doi101098rspb20042692)

                            51 Novacek M J 1992 Mammalian phylogeny shakingthe tree Nature 356 121ndash125 (doi101038

                            356121a0)52 Novacek M J 1993 Reflections on higher mammalian

                            phylogenetics J Mamm Evol 1 1064ndash755453 Springer M S Cleven G C Madsen O de Jong

                            W W Waddell V G Amrine H M amp Stanhope

                            M J 1997 Endemic African mammals shake the phylo-genetic tree Nature 388 61ndash64 (doi10103840386)

                            54 Springer M S Murphy W J Eizirik E amp OrsquoBrienS J 2005 Molecular evidence for major placental

                            clades In The rise of placental mammals origins andrelationships of the major extant clades (eds K D Roseamp J D Archibald) pp 37ndash49 Baltimore MD JohnsHopkins University Press

                            55 Stanhope M J Madsen O Waddell V G Cleven

                            G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

                            56 Stanhope M J Waddell V G Madsen O de Jong

                            W W Hedges S B Cleven G C Kao D ampSpringer M S 1998 Molecular evidence for multipleorigins of Insectivora and for a new order of endemicAfrican insectivore mammals Proc Natl Acad SciUSA 95 9967ndash9972 (doi101073pnas95179967)

                            57 Waddell P Okada N amp Hasegawa M 1999 Towardsresolving the interordinal relationships of placentalmammals Syst Biol 48 1ndash5 (doi101093sysbio4811)

                            58 Waddell P J Kishino H amp Ota R 2001 A phyloge-netic foundation for comparative mammaliangenomics Genome Inform 12 141ndash154

                            59 Eizirik E Murphy W J amp OrsquoBrien S J 2001 Mol-ecular dating and biogeography of the early placental

                            mammal radiation J Hered 92 212ndash219 (doi101093jhered922212)

                            60 Madsen O et al 2001 Parallel adaptive radiations intwo major clades of placental mammals Nature 409610ndash614 (doi10103835054544)

                            61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

                            62 Murphy W J et al 2001 Resolution of the early placen-

                            tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

                            63 Scally M Madsen O Douady C J de Jong W WStanhope M J amp Springer M S 2001 Molecular

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                            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                            evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

                            64 Springer M S amp de Jong W W 2001 Which mamma-lian supertree to bark up Science 291 1709ndash1711

                            65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

                            (doi101093bioinformaticsbtl446)66 Benton M J amp Donoghue P C J 2007 Paleontologi-

                            cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

                            67 Reisz R R amp Muller J 2004 Molecular timescales andthe fossil record a paleontological perspective TrendsGenet 20 237ndash241 (doi101016jtig200403007)

                            68 Muller J amp Reisz R R 2005 Four well-constrainedcalibration points from the vertebrate fossil record for

                            molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

                            69 Gradstein F M amp Ogg J G 2009 The geologic timescale In The timetree of life (eds S B Hedges amp SKumar) pp 26ndash34 Oxford UK Oxford University Press

                            70 Gheerbrant E 2009 Paleocene emergence of elephantrelatives and the rapid radiation of African ungulatesProc Natl Acad Sci USA 106 10717ndash10721(doi101073pnas0900251106)

                            71 Bergqvist L P Abrantes E A L amp Avilla L D S

                            2004 The Xenarthra (Mammalia) of Sao Jose de Ita-boraı Basin (upper Paleocene Itaboraian) Rio deJaneiro Brazil Geodiversitas 26 323ndash337

                            72 Carlini A A Pascual R Reguero M A Scillato-

                            Yane G J Tonni E P amp Vizcaıno S F 1990 Thefirst Paleogene land placental mammal from Antarcticaits paleoclimatic and paleobiogeographical bearings InAbstracts IV International Congress of Systematic and Evol-utionary Biology (eds B Cox amp J Reveal) 325 p

                            Baltimore MD University of Maryland73 Vizcaıno S F amp Scillato-Yane G J 1995 An Eocene

                            Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

                            74 Benton M J Donoghue P C J amp Asher R J 2009

                            Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

                            75 Flynn J J 1996 Carnivoran phylogeny and rates ofevolution morphological taxonomic and molecular

                            In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

                            76 Hunt Jr R M amp Tedford R H 1993 Phylogenetic

                            relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

                            77 Wesley-Hunt G D amp Flynn J J 2005 Phylogeny ofthe Carnivora basal relationships among the carnivora-morphans and assessment of the position oflsquoMiacoidearsquo relative to Carnivora J Syst Palaeontol 31ndash28 (doi101017S1477201904001518)

                            78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

                            79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

                            Phil Trans R Soc B (2011)

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                            American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

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                            (Argentina) Mol Phylogenet Evol 55 38ndash46 (doi101016jympev200912021)

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                            UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

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                            Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

                            99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

                            100 Antoine P-O et al 2007 The middle Miocene (Laven-

                            tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

                            Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

                            Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

                            (doi1016710272-4634(2007)27[683OADOTO]20CO2)

                            102 Frailey C D amp Campbell K E 2004 The rodents ofthe Santa Rosa Local Fauna In The Paleogene mamma-lian fauna of Santa Rosa Amazonian Peru (ed K E

                            Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

                            103 Martin T 2004 Evolution of incisor enamel micro-structure in Lagomorpha J Vertebr Paleontol 24

                            411ndash426 (doi1016712513)104 Lopez-Martinez N 2008 The lagomorph fossil

                            record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

                            105 Marivaux L Bocat L Chaimanee Y Jaeger J-JMarandat B Srisuk P Tafforeau P Yamee C ampWelcomme L 2006 Cynocephalid dermopterans

                            from the Palaeogene of South Asia (Thailand Myan-mar and Pakistan) systematic evolutionary andpalaeobiogeographic implications Zool Scripta 35395ndash420 (doi101111j1463-6409200600235x)

                            106 Tong Y 1988 Fossil tree shrews from the Eocene

                            Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

                            107 Godfrey L R amp Jungers W L 2002 Quaternary fossillemurs In The primate fossil record (ed W C Hartwig)pp 97ndash121 Cambridge UK Cambridge University

                            Press108 Bajpai S Kay R F Williams B A Das D P

                            Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

                            Phil Trans R Soc B (2011)

                            109 Beard K C Qi T Dawson M R Wang B amp Li C1994 A diverse new primate fauna from middle Eocenefissure-fillings in southeastern China Nature 368

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                            F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

                            111 Honey J G Harrison J A Prothero D R ampStevens M S 1998 Camelidae In Evolution of Tertiarymammals of North America terrestrial carnivoresungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp439ndash462 Cambridge UK Cambridge University Press

                            112 Metais G amp Vislobokova I 2008 Basal ruminants In

                            The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

                            113 Harris J M amp Li-Ping L 2008 Superfamily SuoideaIn The evolution of artiodactyls (eds D R Prothero amp S

                            E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

                            114 Bowen G J Clyde W C Koch P L Ting SAlroy J Tsubamoto T Wang Y amp Wang Y 2002Mammalian dispersal at the PaleoceneEocene bound-

                            ary Science 295 2062ndash2065 (doi101126science1068700)

                            115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

                            earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

                            116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

                            117 Colbert M W amp Schoch R M 1998 Tapiroidea and

                            other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

                            118 Dashzeveg D 1996 Some carnivorous mammals fromthe Paleogene of the Eastern Gobi Desert Mongoliaand the application of Oligocene carnivores to strati-graphic correlation Am Mus Novit 3179 1ndash14

                            119 Hunt Jr R M 1998 Evolution of the aeluroid Carni-vora diversity of the earliest aeluroids from Eurasia(Quercy Hsanda-Gol) and the origin of felids AmMus Novit 3252 1ndash65

                            120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

                            cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

                            121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

                            122 Huelsenbeck J P amp Ronquist F 2001 MrBAYESBayesian inference of phylogenetic trees Bioinformatics17 754ndash755 (doi101093bioinformatics178754)

                            123 Ronquist F amp Huelsenbeck J P 2003 MrBayes 3Bayesian phylogenetic inference under mixed modelsBioinformatics 19 1572ndash1574 (doi101093bioinfor-maticsbtg180)

                            2500 M S Springer et al Mammalian historical biogeography

                            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

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                            125 Asher R J Novacek M J amp Geisler J G 2003

                            Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

                            126 Zack S P Penkrot T A Bloch J I amp Rose K D

                            2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

                            127 Tabuce R Marivaux L Adaci M Bensalah M

                            Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

                            128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

                            129 Simpson G G 1951 History of the fauna of Latin

                            America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

                            130 Simpson G G 1978 Early mammals in South Amer-ica fact controversy and mystery Proc Am PhilSoc 122 318ndash328

                            131 Archibald J D 1996 Fossil evidence for a Late Cretac-eous origin of lsquohoofedrsquo mammals Science 272 1150ndash1153 (doi101126science27252651150)

                            132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

                            133 Cifelli R L amp Davis B M 2003 Marsupial origins

                            Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

                            2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

                            135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

                            eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

                            136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

                            pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

                            W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

                            260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

                            N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

                            139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

                            Phil Trans R Soc B (2011)

                            140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

                            141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

                            0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

                            roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

                            of mammals Proc Natl Acad Sci USA 106 5235ndash5240

                            143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

                            144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

                            145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

                            146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

                            73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

                            dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

                            148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

                            108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

                            dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                            37091305110239)150 McCall R 1997 Implications of recent geological

                            investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

                            151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

                            152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

                            153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

                            154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

                            155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

                            caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

                            156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

                            Mammalian historical biogeography M S Springer et al 2501

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                            revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

                            157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

                            158 Rowe D L Dunn K A Adkins R M amp Honeycutt

                            R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

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                            Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

                            160 Beard K C amp Wang J 2004 The eosimiid primates

                            (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

                            161 Arnason U Gullberg A Schweizer B A amp Janke A

                            2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

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                            164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

                            513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

                            ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

                            AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

                            diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

                            167 Gunnell G F amp Simmons N B 2005 Fossil evidence

                            and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                            168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                            Wyoming and the evolution of flight and echolocationNature 451 818ndash822

                            169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

                            paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                            170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

                            171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

                            ian evolution Science 302 1934ndash1939 (doi101126science1090718)

                            172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

                            Phil Trans R Soc B (2011)

                            dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                            173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

                            D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

                            174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

                            from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                            175 Cifelli R L 1993 Theria of metatherianndasheutherian

                            grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                            176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                            177 Wible J R 1990 Late Cretaceous marsupial petrosal

                            bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                            178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                            pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                            179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                            of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                            180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                            2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                            181 Beck R M Godthelp H Weisbecker V Archer M

                            amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                            182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                            Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                            183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                            for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                            184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                            implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                            185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                            phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                            186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                            marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                            187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                            2502 M S Springer et al Mammalian historical biogeography

                            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                            mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                            188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                            189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                            190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                            Phil Trans R Soc B (2011)

                            Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                            191 Springer M S amp Krajewski C 2009 Monotremes

                            (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                            192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                            53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                            In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                            194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                            • The historical biogeography of Mammalia
                              • Introduction
                              • Phylogeny reconstruction
                              • Molecular dating analyses
                              • Ancestral area reconstruction
                              • Box 1
                              • Ancestral area chronograms and palaeogeography
                              • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                              • Placental biogeography
                              • The importance of dispersal
                              • Bat biogeography
                              • Marsupial biogeography
                              • Monotreme biogeography
                              • Conclusions
                              • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
                              • REFERENCES

                              Table 5 Comparison of different methods for reconstructing ancestral areas NA1 not applicable for monomorphic

                              reconstruction methods NA2 not applicable when the maximum number of areas is set at two NA2 not applicable formethods that employ single multistate charactersa

                              FP-MBC FP-SMCMACParsimony DIVA DIVA-2 DEC DEC-2 SM-MBC SM-SMC

                              nodes with ambiguous 75 129 128 1211 107 2323 2623 1617 614reconstructionsb 1920 1718 1012 410

                              nodes with 2 areasc 33 NA1 46 1618 1516 1820 2019 77 NA11720 1717 46

                              nodes with 3 areasd 00 NA1 00 65 NA2 66 NA2 00 NA145 00

                              empty nodese 95 NA3 NA3 NA3 NA3 NA3 NA3 34 NA344

                              aNumbers before slashes are based on analyses with area coding for extant taxa and numbers after slashes are based on analyses with areacoding for the oldest fossil See table 3 for abbreviationsbFor FP-MBC nodes were considered ambiguous if at least one area was reconstructed as (01) For SM-MBC and SM-SMC nodes wereconsidered ambiguous if the posterior probability (PP) of at least one area was 01 PP 09 (top line) or 02 PP 08 (bottom line)For DEC and DEC-2 nodes were considered ambiguous if the frequency ( f ) of at least one area was 01 f 09 (top line) or 02 p 08 (bottom line)cAt least two areas in at least one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) was takento include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line) or020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02 (bottomline)dAt least three areas in more than one of the alternate resolutions for an ancestral node For FP-MBC each occurrence of 1 or (01) wastaken to include an ancestral area For SM-MBC areas were counted as present at a node if posterior probabilities were 010 (top line)or 020 (bottom line) For DEC and DEC-2 areas were counted as present at a node if frequencies were 01 (top line) or 02(bottom line)eFor FP-MBC nodes were considered empty if all areas were reconstructed as 0 For SM-MBC nodes were considered empty if posteriorprobabilities were 010 (top line) or 020 (bottom line) for all four areas

                              Mammalian historical biogeography M S Springer et al 2491

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                              Eurasia throughout the Cretaceous but were absentfrom North America through much of the Late Cre-taceous and only attained appreciable diversity thereduring the last approximately 10 Myr of the period[133134] Boyer et al [135] concluded that theIndian subcontinent Eurasia and Africa are morelikely places of origin for Euarchonta than is NorthAmerica This agrees with our ancestral areareconstructions (figures 3 4 and tables 3 4)

                              Although there is robust support for the monophylyof Xenarthra Afrotheria and Boreoeutheria relation-ships among these three groups and the root of theplacental tree remain contentious [105460ndash63136]Murphy et al [62] and Springer et al [10] suggested acausal relationship between the sundering of Africa andSouth America and basal cladogenesis among crown-group placental mammals given the coincidence ofmolecular dates for the base of placentals and thevicariant separation of Africa and South Americaapproximately 100ndash120 Ma

                              Asher et al [125] analysed a combined matrix andrecovered Afrotheria in a nested position within Pla-centalia which contradicts the hypothesis that theplate tectonic separation of Africa and South Americaplayed a causal role in the early cladogenesis of placen-tal mammals However the nested position forAfrotheria resulted from the paraphyly of Euarchonto-glires Glires and Rodentia Rare genomic changesconfirm the monophyly of Xenarthra [137] Afrotheria[138ndash142] Euarchontoglires [139141142] Laura-siatheria [139141142] and Boreoeutheria[139141142] and preclude a nested position forAfrotheria in the placental tree

                              Rare genomic changes have also been used toexamine the position of the placental root Kriegs

                              Phil Trans R Soc B (2011)

                              et al [139] reported LINE insertions that are sharedby Epitheria whereas Murphy et al [16] discoveredrare genomic changes that support AtlantogenataNishihara et al [142] performed genome-wide retro-poson analyses and found 22 25 and 21 LINEinsertions for Exafroplacentalia Epitheria and Atlan-togenata respectively Based on these resultsNishihara et al [142] concluded that XenarthraAfrotheria and Boreoeutheria diverged from oneanother nearly simultaneously They also suggested anew palaeogeographical model for the breakup of Pan-gaea and Gondwana in which Africa becomes isolatedfrom both South America and Laurasia at approxi-mately 120 Ma and argued that these coeval platetectonic events provide an explanation for the simul-taneous divergence of Afrotheria Xenarthra andBoreoeutheria However relaxed clock dates for thebase of Placentalia are closer to 100 Ma than to120 Ma (figures 3 and 4) A second difficulty concernsthe opening of the South Atlantic Nishihara et al[142] suggested that the Brazilian Bridge which rep-resented the last connection between Africa andSouth America was severed at approximately120 Mya but other recent reconstructions suggestthat the connection between the South Atlantic andCentral Atlantic was not established until lateAptianmid-Albian times (approx 110ndash100 Ma)[143144]

                              8 THE IMPORTANCE OF DISPERSALIn the context of pre-plate tectonic views of theEarth Simpson [2] proposed three types ofmigration routes to describe the movement of ani-mals corridors filter bridges and sweepstakes

                              Africa

                              Mad

                              agas

                              car

                              Tanzania

                              Mozambique

                              N

                              100 mi

                              Figure 5 Present day surface ocean currents in the Mozam-bique Channel (solid arrows) are southndashsouthwest andwould not have facilitated west to east transoceanic dispersalfrom Africa to Madagascar [153] By contrast westerly sur-face ocean currents in the Eocene (dashed arrows) would

                              have facilitated dispersal across the Mozambique Channelfrom Africa to Madagascar especially during tropicalstorms [154] The outline of Madagascar with dashed linesshows its approximate position relative to Africa during theEocene

                              2492 M S Springer et al Mammalian historical biogeography

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                              dispersal Corridors connect two areas and are per-meable to all animals filter bridges impose selectivebarriers that affect some but not all animals andsweepstakes dispersal is required when there arestrong barriers to migration such as high mountainbarriers or oceans

                              Simpson [2] suggested that Madagascarrsquos livingmammals were the product of sweepstakes dispersalfrom Africa to Madagascar Sweepstakes dispersalhypotheses fell out of favour with the validation ofplate tectonic theory and were summarily dismissedas lsquomiraculousrsquo hypotheses with no scientific basis[145] However it has become apparent that some dis-tributional patterns can only be explained bysweepstakes dispersal [146] Observational data alsoprovide support for long-distance vertebrate dispersal[147] Examples of low probability sweepstakes disper-sal involving mammals include the origins of theendemic mammal fauna in Madagascar and theoccurrence of caviomorph rodents and platyrrhine pri-mates in South America

                              Madagascarrsquos strictly terrestrial extant mammal faunaincludes endemic lineages from four placental orderstenrecs (Afrosoricida) euplerids (Carnivora) neso-myines (Rodentia) and lemurs (Primates) In eachlineage Madagascar endemics comprise monophyleticassemblages with closest living relatives in Africa[148149] Madagascar separated from Africa approxi-mately 165 Ma but maintained its connection withAntarctica via the Kerguelen Plateau until as late as80 Ma at which time it became permanentlyseparated from other Gondwanan landmasses This his-tory suggests that Madagascarrsquos terrestrial endemicmammals are either the ancient descendants of vicariantevents that occurred prior to 80 Ma or reached Mada-gascar via transoceanic sweepstakes dispersal at a latertime Another possibility is that a land bridge connectedAfrica and Madagascar between 45 and 26 Ma [150]

                              Molecular divergence dates suggest that all fourendemic lineages last shared a common ancestorwith their African sister group in the Cenozoic[148149151152] Poux et al [148] concluded thatdispersal by lemurs rodents and carnivorans musthave occurred by transoceanic dispersal rather thanland bridge dispersal based on molecular dates forthe colonization of Madagascar that were outside ofthe land bridge window ie 60ndash50 Ma for lemurs26ndash19 Ma for carnivorans and 24ndash20 Ma for rodentsHowever present ocean currents allow for dispersalfrom Madagascar to Africa but oppose reciprocal dis-persal from Africa to Madagascar across theMozambique Channel If ocean currents were thesame for most of the Cenozoic as they are todaythey would not have facilitated west to east transocea-nic dispersal across the Mozambique Channel becauseof the strong southndashsouthwest flow of the Mozambi-que Current [153]

                              Ali amp Huber [154] addressed this problem by simu-lating surface ocean currents in the Indian Oceanduring the Eocene They concluded that large-scaleocean current systems in the Eocene were profoundlydifferent from modern observed circulatory patternsand that the flow along the African coast was eastwardtowards Madagascar instead of southward through the

                              Phil Trans R Soc B (2011)

                              Mozambique Channel (figure 5) Ali amp Huber [154]further suggested that dispersal probabilities wereenhanced by tropical storms that (i) generated largefloating tree islands that would have allowed for asuccessful oceanic voyage and (ii) acceleratedtransportation rates from Africa to Madagascar thatwould have allowed for complete crossing of theMozambique Channel in 25ndash30 days

                              The dispersal of four groups of fully terrestrialmammals from Africa to Madagascar at a time whenthere was no land bridge is a testament to the impor-tance of rare sweepstakes events in the evolutionaryhistory of Placentalia Even more remarkable is theoccurrence of two different groups of placental mam-mals hystricognath rodents and anthropoid primatesin Africa and South America

                              Hystricognathi includes Hystricidae (Old World por-cupines) and Phiomorpha (eg cane rats dassie rats)from the Old World and Caviomorpha (eg porcupineschinchillas) from the New World The oldest hystricog-naths are from the late Eocene Egypt and have beendated at approximately 37 Ma [81] Old World hystri-cognaths are paraphyletic usually with phiomorphshaving closer phylogenetic affinities to South Americancaviomorphs than to hystricids [14155156] Relaxedclock dates suggest that South American caviomorphslast shared a common ancestor with phiomorphsbetween 45 and 36 Ma [81155157] The most recentcommon ancestor of Caviomorpha has been dated at45ndash31 Ma [81155157158]

                              PacificOcean

                              NorthAtlanticOcean

                              SouthAtlantic Ocean

                              IndianOcean

                              NorthAmerica

                              SouthAmerica

                              Africa

                              Antarctica

                              Australia

                              Asia

                              Europe

                              PacificOcean1b

                              1b

                              1a3

                              2

                              Middle Eocene

                              Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

                              South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

                              Mammalian historical biogeography M S Springer et al 2493

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                              Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

                              The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

                              Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

                              Phil Trans R Soc B (2011)

                              phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

                              9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

                              The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

                              Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

                              or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

                              node number (figure 7) Eick et al [12] re-analysis

                              1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

                              ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

                              3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

                              4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

                              9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

                              10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

                              11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

                              12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

                              ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

                              13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

                              ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

                              BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

                              14 A A B C AC BC ABC15 A A B C AC BC

                              16 A A B C17 A A B AC BC ABC

                              2494 M S Springer et al Mammalian historical biogeography

                              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                              and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

                              We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

                              Phil Trans R Soc B (2011)

                              Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

                              FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

                              1

                              2

                              3

                              4

                              56

                              7

                              8

                              9

                              10

                              11

                              1213

                              14

                              1516

                              17

                              EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

                              Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

                              Mammalian historical biogeography M S Springer et al 2495

                              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                              with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

                              10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

                              In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

                              Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

                              Phil Trans R Soc B (2011)

                              sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

                              In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

                              11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

                              In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

                              With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

                              12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

                              2496 M S Springer et al Mammalian historical biogeography

                              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                              together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

                              MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

                              REFERENCES1 Jones K E amp Safi K 2011 Ecology and evolution of

                              mammalian biodiversity Phil Trans R Soc B 366

                              2451ndash2461 (doi101098rstb20110090)2 Simpson G G 1940 Mammals and land bridges

                              J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

                              Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

                              4 Springer M S Meredith R W Eizirik E Teeling

                              E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

                              5 Bollback J P 2006 SIMMAP stochastic charactermapping of discrete traits on phylogenies BMC Bioin-form 7 88 (doi1011861471-2105-7-88)

                              6 Drummond A J Ho S Y W Phillips M J amp Ram-baut A 2006 Relaxed phylogenetics and dating withconfidence PLoS Biol 4 e88 (doi101371journalpbio0040088)

                              7 Zuckerkandl E amp Pauling L 1962 Molecular diseaseevolution and genetic heterogeneity In Horizons in bio-chemistry (eds M Kasha amp B Pullman) pp 189ndash225New York NY Academic Press

                              8 Douady C J amp Douzery E J P 2003 Molecular esti-mation of eulipotyphlan divergence times and theevolution of lsquoInsectivorarsquo Mol Phylogenet Evol 28285ndash296 (doi101016S1055-7903(03)00119-2)

                              9 Douady C J Catzeflis F Raman J Springer M S

                              amp Stanhope M J 2003 Molecular evidence for theSahara as a vicariant agent and the role of Miocene cli-matic events in the diversification of the mammalianorder Macroscelidea (elephant shrews) Proc NatlAcad Sci USA 100 8325ndash8330 (doi101073pnas

                              0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

                              S J 2003 Placental mammal diversification and theCretaceousndashTertiary boundary Proc Natl Acad SciUSA 100 1056ndash1061 (doi101073pnas0334222

                              100)11 Delsuc F Vizcaıno S F amp Douzery E J P 2004

                              Influence of Tertiary paleoenvironmental changes onthe diversification of South American mammals a

                              relaxed molecular clock study within xenarthransBMC Evol Biol 4 11 (doi1011861471-2148-4-11)

                              Phil Trans R Soc B (2011)

                              12 Eick G N Jacobs D S amp Matthee C A 2005 Anuclear DNA phylogenetic perspective on the evolutionof echolocation and historical biogeography of extant

                              bats (Chiroptera) Mol Biol Evol 22 1869ndash1886(doi101093molbevmsi180)

                              13 Teeling E C Springer M S Madsen O Bates POrsquoBrien S J amp Murphy W J 2005 A molecular phy-logeny for bats illuminates biogeography and the fossil

                              record Science 307 580ndash584 (doi101126science1105113)

                              14 Huchon D Chevret P Jordan U Kilpatrick C WRanwez V Jenkins P D Brosius J amp Schmitz J

                              2007 Multiple molecular evidences for a living mamma-lian fossil Proc Natl Acad Sci USA 104 7495ndash7499(doi101073pnas0701289104)

                              15 Janecka J E Miller W Pringle T H Wiens FZitzmann A Helgen K M Springer M S amp

                              Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

                              16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

                              the root of the placental mammal tree Genome Res 17413ndash421 (doi101101gr5918807)

                              17 Beck R M 2008 A dated phylogeny of marsupialsusing a molecular supermatrix and multiple fossil con-straints J Mammal 89 175ndash189 (doi10164406-

                              MAMM-A-4371)18 Meredith R W Westerman M amp Springer M S

                              2008 A timescale and phylogeny for lsquobandicootsrsquo (Pera-melemorphia Marsupialia) based on sequences for five

                              nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

                              19 Meredith R W Westerman M amp Springer M S2008 Phylogeny and timescale for the living genera ofkangaroos and kin (Macropodiformes Marsupialia)

                              based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

                              20 Meredith R W Westerman M amp Springer M S 2009A phylogeny of Diprotodontia (Marsupialia) based onsequences for five nuclear genes Mol Phylogenet Evol51 554ndash571 (doi101016jympev200902009)

                              21 Meredith R W Krajewski C Westerman W ampSpringer M S 2009 Relationships and divergencetimes among the orders and families of marsupialsMus N Ariz Bull 65 383ndash406

                              22 Chatterjee H J Ho S W Y Barnes I amp Groves C2009 Estimating the phylogeny and divergence times ofprimates using a supermatrix approach BMC EvolBiol 9 259 (doi1011861471-2148-9-259)

                              23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

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                              estimating divergence times in the absence of rate con-stancy Mol Biol Evol 14 1218ndash1231

                              25 Sanderson M J 2002 Estimating absolute rates of mol-

                              ecular evolution and divergence times a penalizedlikelihood approach Mol Biol Evol 19 101ndash109

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                              27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

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                              credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

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                              in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

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                              local extinction and cladogenesis Syst Biol 57 4ndash14 (doi10108010635150701883881)

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                              version 3 analysis of phylogeny and character evolutionSunderland MA Sinauer Associates

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                              ology In Problems of phylogenetic reconstruction (eds K AJoysey amp A E Friday) pp 21ndash74 London UK Aca-demic Press

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                              ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

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                              Phil Trans R Soc B (2011)

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                              phy of bats in South America Chiroptera Neotropical15 391ndash410

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                              grative historical biogeography J Int Comp Biol 43261ndash270 (doi101093icb432261)

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                              Cretaceous terrestrial vertebrates from Madagascarimplications for Latin American biogeography AnnMo Bot Gard 93 178ndash208 (doi1034170026-6493(2006)93[178LCTVFM]20CO2)

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                              dinosaurs link southern landmasses in the Mid-Cretac-eous Proc R Soc Lond B 271 1325ndash1330 (doi101098rspb20042692)

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                              phylogenetics J Mamm Evol 1 1064ndash755453 Springer M S Cleven G C Madsen O de Jong

                              W W Waddell V G Amrine H M amp Stanhope

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                              clades In The rise of placental mammals origins andrelationships of the major extant clades (eds K D Roseamp J D Archibald) pp 37ndash49 Baltimore MD JohnsHopkins University Press

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                              G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

                              56 Stanhope M J Waddell V G Madsen O de Jong

                              W W Hedges S B Cleven G C Kao D ampSpringer M S 1998 Molecular evidence for multipleorigins of Insectivora and for a new order of endemicAfrican insectivore mammals Proc Natl Acad SciUSA 95 9967ndash9972 (doi101073pnas95179967)

                              57 Waddell P Okada N amp Hasegawa M 1999 Towardsresolving the interordinal relationships of placentalmammals Syst Biol 48 1ndash5 (doi101093sysbio4811)

                              58 Waddell P J Kishino H amp Ota R 2001 A phyloge-netic foundation for comparative mammaliangenomics Genome Inform 12 141ndash154

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                              mammal radiation J Hered 92 212ndash219 (doi101093jhered922212)

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                              61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

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                              tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

                              63 Scally M Madsen O Douady C J de Jong W WStanhope M J amp Springer M S 2001 Molecular

                              2498 M S Springer et al Mammalian historical biogeography

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                              evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

                              64 Springer M S amp de Jong W W 2001 Which mamma-lian supertree to bark up Science 291 1709ndash1711

                              65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

                              (doi101093bioinformaticsbtl446)66 Benton M J amp Donoghue P C J 2007 Paleontologi-

                              cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

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                              molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

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                              70 Gheerbrant E 2009 Paleocene emergence of elephantrelatives and the rapid radiation of African ungulatesProc Natl Acad Sci USA 106 10717ndash10721(doi101073pnas0900251106)

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                              2004 The Xenarthra (Mammalia) of Sao Jose de Ita-boraı Basin (upper Paleocene Itaboraian) Rio deJaneiro Brazil Geodiversitas 26 323ndash337

                              72 Carlini A A Pascual R Reguero M A Scillato-

                              Yane G J Tonni E P amp Vizcaıno S F 1990 Thefirst Paleogene land placental mammal from Antarcticaits paleoclimatic and paleobiogeographical bearings InAbstracts IV International Congress of Systematic and Evol-utionary Biology (eds B Cox amp J Reveal) 325 p

                              Baltimore MD University of Maryland73 Vizcaıno S F amp Scillato-Yane G J 1995 An Eocene

                              Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

                              74 Benton M J Donoghue P C J amp Asher R J 2009

                              Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

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                              In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

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                              relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

                              77 Wesley-Hunt G D amp Flynn J J 2005 Phylogeny ofthe Carnivora basal relationships among the carnivora-morphans and assessment of the position oflsquoMiacoidearsquo relative to Carnivora J Syst Palaeontol 31ndash28 (doi101017S1477201904001518)

                              78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

                              79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

                              Phil Trans R Soc B (2011)

                              80 Storch G amp Seiffert C 2007 Extraordinarily preservedspecimen of the oldest known glirid from the middleEocene of Messel (Rodentia) J Vertebr Paleontol 27

                              189ndash194 (doi1016710272-4634(2007)27[189EPSOTO]20CO2)

                              81 Sallam H M Seiffert E R Steiper M E amp SimonsE L 2009 Fossil and molecular evidence constrainscenarios for the early evolutionary and biogeographic

                              history of hystricognathous rodents Proc Natl AcadSci USA 106 16 722ndash16 727 (doi101073pnas0908702106)

                              82 Hartenberger L 1998 Description of the radiation of

                              the Rodentia (Mammalia) from the Late Paleocene tothe Miocene phylogenetic consequences C R AcadSci II A 326 439ndash444

                              83 Vucetich M G Verzi D H amp Hartenberger L 1999Review and analysis of the radiation of the South

                              American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

                              84 Flynn L J amp Jacobs L L 2008 Castoridea In Evolution oftertiary mammals of North America small mammals xenar-thrans and marine mammals (eds C M Janis G F

                              Gunnell amp M D Uhen) vol 2 pp 391ndash405 CambridgeUK Cambridge University Press

                              85 Marenssi S A Reguero M A Santillana S N ampVizcaıno S F 1994 Eocene land mammals from Sey-mour Island Antarctica paleobiogeographical

                              implications Antarctic Sci 6 3ndash15 (doi101017S0954102094000027)

                              86 MacPhee R D E amp Reguero M A 2010 Reinterpre-tation of a middle Eocene record of Tardigrada (Pilosa

                              Xenarthra Mammalia) from La Meseta FormationSeymour Island West Antarctica Am Mus Novit3689 1ndash21 (doi1012067031)

                              87 McKenna M C amp Bell S K 1997 Classification ofmammals above the species level New York NY Colum-

                              bia University Press88 Gaudin T J amp Branham D G 1998 The phylogeny of

                              the Myrmecophagidae (Mammalia Xenarthra Vermi-lingua) and relationship of Eurotamandua to theVermilingua J Mamm Evol 5 237ndash265 (doi10

                              1023A1020512529767)89 Galliari F C Carlini A A amp Sanchez-Villagra M R

                              2010 Evolution of the axial skeleton in armadillos(Mammalia Dasypodidae) Mamm Biol 75 326ndash333 (doi101016jmambio200903014)

                              90 Poljak S Confalonieri V Fasanella M Gabrielli Mamp Lizarralde M S 2010 Phylogeography of the arma-dillo Chaetophractus villosus (Dasypodidae Xenarthra)post-glacial range expansion from Pampas to Patagonia

                              (Argentina) Mol Phylogenet Evol 55 38ndash46 (doi101016jympev200912021)

                              91 Sige B Crochet J-Y amp Insole A 1977 Les plusvielles taupes Geobios Mem Spec 1 141ndash157(doi101016S0016-6995(77)80014-4)

                              92 Gunnell G F Bown T M Hutchinson J H ampBloch J I 2008 Lipotyphla In Evolution of Tertiarymammals of North America small mammals xenarthransand marine mammals vol 2 (eds C M Janis G FGunnell amp M D Uhen) pp 89ndash125 Cambridge

                              UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

                              amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

                              94 Tabuce R Asher R J amp Lehmann T 2008 Afrother-ian mammals a review of current data Mammalia 722ndash14 (doi101515MAMM2008004)

                              Mammalian historical biogeography M S Springer et al 2499

                              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                              95 Butler P M 1995 Fossil Macroscelidea Mammal Rev25 3ndash14 (doi101111j1365-29071995tb00432x)

                              96 Milledge S 2003 Fossil aardvarks from the Lothagam

                              beds In Lothagam the dawn of humanity in EasternAfrica (eds J Leakey amp J Harris) pp 363ndash368New York NY Columbia University Press

                              97 Flynn L J amp Jacobs L L 2008 Aplodontia In Evol-ution of tertiary mammals of North America smallmammals xenarthrans and marine mammals vol 2(eds C M Janis G F Gunnell amp M D Uhen) pp377ndash390 Cambridge UK Cambridge UniversityPress

                              98 Marivaux L Ducrocq S Jaeger J-J Marandat BSudre J Chaimanee Y Tun S T Htoon W ampSoe A N 2005 New remains of Pondaungimysanomaluropsis (Rodentia Anomaluroidea) from thelatest middle Eocene Pondaung Formation of

                              Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

                              99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

                              100 Antoine P-O et al 2007 The middle Miocene (Laven-

                              tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

                              Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

                              Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

                              (doi1016710272-4634(2007)27[683OADOTO]20CO2)

                              102 Frailey C D amp Campbell K E 2004 The rodents ofthe Santa Rosa Local Fauna In The Paleogene mamma-lian fauna of Santa Rosa Amazonian Peru (ed K E

                              Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

                              103 Martin T 2004 Evolution of incisor enamel micro-structure in Lagomorpha J Vertebr Paleontol 24

                              411ndash426 (doi1016712513)104 Lopez-Martinez N 2008 The lagomorph fossil

                              record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

                              105 Marivaux L Bocat L Chaimanee Y Jaeger J-JMarandat B Srisuk P Tafforeau P Yamee C ampWelcomme L 2006 Cynocephalid dermopterans

                              from the Palaeogene of South Asia (Thailand Myan-mar and Pakistan) systematic evolutionary andpalaeobiogeographic implications Zool Scripta 35395ndash420 (doi101111j1463-6409200600235x)

                              106 Tong Y 1988 Fossil tree shrews from the Eocene

                              Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

                              107 Godfrey L R amp Jungers W L 2002 Quaternary fossillemurs In The primate fossil record (ed W C Hartwig)pp 97ndash121 Cambridge UK Cambridge University

                              Press108 Bajpai S Kay R F Williams B A Das D P

                              Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

                              Phil Trans R Soc B (2011)

                              109 Beard K C Qi T Dawson M R Wang B amp Li C1994 A diverse new primate fauna from middle Eocenefissure-fillings in southeastern China Nature 368

                              604ndash609 (doi101038368604a0)110 Orliac M Boisserie J-R MacLatchy L amp Lihoreau

                              F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

                              111 Honey J G Harrison J A Prothero D R ampStevens M S 1998 Camelidae In Evolution of Tertiarymammals of North America terrestrial carnivoresungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp439ndash462 Cambridge UK Cambridge University Press

                              112 Metais G amp Vislobokova I 2008 Basal ruminants In

                              The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

                              113 Harris J M amp Li-Ping L 2008 Superfamily SuoideaIn The evolution of artiodactyls (eds D R Prothero amp S

                              E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

                              114 Bowen G J Clyde W C Koch P L Ting SAlroy J Tsubamoto T Wang Y amp Wang Y 2002Mammalian dispersal at the PaleoceneEocene bound-

                              ary Science 295 2062ndash2065 (doi101126science1068700)

                              115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

                              earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

                              116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

                              117 Colbert M W amp Schoch R M 1998 Tapiroidea and

                              other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

                              118 Dashzeveg D 1996 Some carnivorous mammals fromthe Paleogene of the Eastern Gobi Desert Mongoliaand the application of Oligocene carnivores to strati-graphic correlation Am Mus Novit 3179 1ndash14

                              119 Hunt Jr R M 1998 Evolution of the aeluroid Carni-vora diversity of the earliest aeluroids from Eurasia(Quercy Hsanda-Gol) and the origin of felids AmMus Novit 3252 1ndash65

                              120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

                              cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

                              121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

                              122 Huelsenbeck J P amp Ronquist F 2001 MrBAYESBayesian inference of phylogenetic trees Bioinformatics17 754ndash755 (doi101093bioinformatics178754)

                              123 Ronquist F amp Huelsenbeck J P 2003 MrBayes 3Bayesian phylogenetic inference under mixed modelsBioinformatics 19 1572ndash1574 (doi101093bioinfor-maticsbtg180)

                              2500 M S Springer et al Mammalian historical biogeography

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                              125 Asher R J Novacek M J amp Geisler J G 2003

                              Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

                              126 Zack S P Penkrot T A Bloch J I amp Rose K D

                              2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

                              127 Tabuce R Marivaux L Adaci M Bensalah M

                              Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

                              128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

                              129 Simpson G G 1951 History of the fauna of Latin

                              America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

                              130 Simpson G G 1978 Early mammals in South Amer-ica fact controversy and mystery Proc Am PhilSoc 122 318ndash328

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                              132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

                              133 Cifelli R L amp Davis B M 2003 Marsupial origins

                              Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

                              2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

                              135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

                              eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

                              136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

                              pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

                              W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

                              260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

                              N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

                              139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

                              Phil Trans R Soc B (2011)

                              140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

                              141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

                              0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

                              roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

                              of mammals Proc Natl Acad Sci USA 106 5235ndash5240

                              143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

                              144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

                              145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

                              146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

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                              dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

                              148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

                              108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

                              dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                              37091305110239)150 McCall R 1997 Implications of recent geological

                              investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

                              151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

                              152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

                              153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

                              154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

                              155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

                              caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

                              156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

                              Mammalian historical biogeography M S Springer et al 2501

                              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                              revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

                              157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

                              158 Rowe D L Dunn K A Adkins R M amp Honeycutt

                              R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

                              159 Beard K C Wang B Dawson M Huang X amp

                              Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

                              160 Beard K C amp Wang J 2004 The eosimiid primates

                              (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

                              161 Arnason U Gullberg A Schweizer B A amp Janke A

                              2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

                              162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

                              163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

                              164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

                              513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

                              ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

                              AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

                              diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

                              167 Gunnell G F amp Simmons N B 2005 Fossil evidence

                              and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                              168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                              Wyoming and the evolution of flight and echolocationNature 451 818ndash822

                              169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

                              paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                              170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

                              171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

                              ian evolution Science 302 1934ndash1939 (doi101126science1090718)

                              172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

                              Phil Trans R Soc B (2011)

                              dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                              173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

                              D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

                              174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

                              from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                              175 Cifelli R L 1993 Theria of metatherianndasheutherian

                              grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                              176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                              177 Wible J R 1990 Late Cretaceous marsupial petrosal

                              bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                              178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                              pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                              179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                              of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                              180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                              2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                              181 Beck R M Godthelp H Weisbecker V Archer M

                              amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                              182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                              Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                              183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                              for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                              184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                              implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                              185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                              phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                              186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                              marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                              187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                              2502 M S Springer et al Mammalian historical biogeography

                              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                              mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                              188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                              189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                              190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                              Phil Trans R Soc B (2011)

                              Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                              191 Springer M S amp Krajewski C 2009 Monotremes

                              (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                              192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                              53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                              In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                              194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                              • The historical biogeography of Mammalia
                                • Introduction
                                • Phylogeny reconstruction
                                • Molecular dating analyses
                                • Ancestral area reconstruction
                                • Box 1
                                • Ancestral area chronograms and palaeogeography
                                • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                                • Placental biogeography
                                • The importance of dispersal
                                • Bat biogeography
                                • Marsupial biogeography
                                • Monotreme biogeography
                                • Conclusions
                                • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
                                • REFERENCES

                                Africa

                                Mad

                                agas

                                car

                                Tanzania

                                Mozambique

                                N

                                100 mi

                                Figure 5 Present day surface ocean currents in the Mozam-bique Channel (solid arrows) are southndashsouthwest andwould not have facilitated west to east transoceanic dispersalfrom Africa to Madagascar [153] By contrast westerly sur-face ocean currents in the Eocene (dashed arrows) would

                                have facilitated dispersal across the Mozambique Channelfrom Africa to Madagascar especially during tropicalstorms [154] The outline of Madagascar with dashed linesshows its approximate position relative to Africa during theEocene

                                2492 M S Springer et al Mammalian historical biogeography

                                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                dispersal Corridors connect two areas and are per-meable to all animals filter bridges impose selectivebarriers that affect some but not all animals andsweepstakes dispersal is required when there arestrong barriers to migration such as high mountainbarriers or oceans

                                Simpson [2] suggested that Madagascarrsquos livingmammals were the product of sweepstakes dispersalfrom Africa to Madagascar Sweepstakes dispersalhypotheses fell out of favour with the validation ofplate tectonic theory and were summarily dismissedas lsquomiraculousrsquo hypotheses with no scientific basis[145] However it has become apparent that some dis-tributional patterns can only be explained bysweepstakes dispersal [146] Observational data alsoprovide support for long-distance vertebrate dispersal[147] Examples of low probability sweepstakes disper-sal involving mammals include the origins of theendemic mammal fauna in Madagascar and theoccurrence of caviomorph rodents and platyrrhine pri-mates in South America

                                Madagascarrsquos strictly terrestrial extant mammal faunaincludes endemic lineages from four placental orderstenrecs (Afrosoricida) euplerids (Carnivora) neso-myines (Rodentia) and lemurs (Primates) In eachlineage Madagascar endemics comprise monophyleticassemblages with closest living relatives in Africa[148149] Madagascar separated from Africa approxi-mately 165 Ma but maintained its connection withAntarctica via the Kerguelen Plateau until as late as80 Ma at which time it became permanentlyseparated from other Gondwanan landmasses This his-tory suggests that Madagascarrsquos terrestrial endemicmammals are either the ancient descendants of vicariantevents that occurred prior to 80 Ma or reached Mada-gascar via transoceanic sweepstakes dispersal at a latertime Another possibility is that a land bridge connectedAfrica and Madagascar between 45 and 26 Ma [150]

                                Molecular divergence dates suggest that all fourendemic lineages last shared a common ancestorwith their African sister group in the Cenozoic[148149151152] Poux et al [148] concluded thatdispersal by lemurs rodents and carnivorans musthave occurred by transoceanic dispersal rather thanland bridge dispersal based on molecular dates forthe colonization of Madagascar that were outside ofthe land bridge window ie 60ndash50 Ma for lemurs26ndash19 Ma for carnivorans and 24ndash20 Ma for rodentsHowever present ocean currents allow for dispersalfrom Madagascar to Africa but oppose reciprocal dis-persal from Africa to Madagascar across theMozambique Channel If ocean currents were thesame for most of the Cenozoic as they are todaythey would not have facilitated west to east transocea-nic dispersal across the Mozambique Channel becauseof the strong southndashsouthwest flow of the Mozambi-que Current [153]

                                Ali amp Huber [154] addressed this problem by simu-lating surface ocean currents in the Indian Oceanduring the Eocene They concluded that large-scaleocean current systems in the Eocene were profoundlydifferent from modern observed circulatory patternsand that the flow along the African coast was eastwardtowards Madagascar instead of southward through the

                                Phil Trans R Soc B (2011)

                                Mozambique Channel (figure 5) Ali amp Huber [154]further suggested that dispersal probabilities wereenhanced by tropical storms that (i) generated largefloating tree islands that would have allowed for asuccessful oceanic voyage and (ii) acceleratedtransportation rates from Africa to Madagascar thatwould have allowed for complete crossing of theMozambique Channel in 25ndash30 days

                                The dispersal of four groups of fully terrestrialmammals from Africa to Madagascar at a time whenthere was no land bridge is a testament to the impor-tance of rare sweepstakes events in the evolutionaryhistory of Placentalia Even more remarkable is theoccurrence of two different groups of placental mam-mals hystricognath rodents and anthropoid primatesin Africa and South America

                                Hystricognathi includes Hystricidae (Old World por-cupines) and Phiomorpha (eg cane rats dassie rats)from the Old World and Caviomorpha (eg porcupineschinchillas) from the New World The oldest hystricog-naths are from the late Eocene Egypt and have beendated at approximately 37 Ma [81] Old World hystri-cognaths are paraphyletic usually with phiomorphshaving closer phylogenetic affinities to South Americancaviomorphs than to hystricids [14155156] Relaxedclock dates suggest that South American caviomorphslast shared a common ancestor with phiomorphsbetween 45 and 36 Ma [81155157] The most recentcommon ancestor of Caviomorpha has been dated at45ndash31 Ma [81155157158]

                                PacificOcean

                                NorthAtlanticOcean

                                SouthAtlantic Ocean

                                IndianOcean

                                NorthAmerica

                                SouthAmerica

                                Africa

                                Antarctica

                                Australia

                                Asia

                                Europe

                                PacificOcean1b

                                1b

                                1a3

                                2

                                Middle Eocene

                                Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

                                South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

                                Mammalian historical biogeography M S Springer et al 2493

                                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

                                The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

                                Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

                                Phil Trans R Soc B (2011)

                                phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

                                9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

                                The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

                                Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

                                or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

                                node number (figure 7) Eick et al [12] re-analysis

                                1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

                                ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

                                3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

                                4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

                                9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

                                10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

                                11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

                                12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

                                ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

                                13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

                                ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

                                BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

                                14 A A B C AC BC ABC15 A A B C AC BC

                                16 A A B C17 A A B AC BC ABC

                                2494 M S Springer et al Mammalian historical biogeography

                                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

                                We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

                                Phil Trans R Soc B (2011)

                                Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

                                FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

                                1

                                2

                                3

                                4

                                56

                                7

                                8

                                9

                                10

                                11

                                1213

                                14

                                1516

                                17

                                EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

                                Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

                                Mammalian historical biogeography M S Springer et al 2495

                                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

                                10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

                                In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

                                Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

                                Phil Trans R Soc B (2011)

                                sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

                                In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

                                11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

                                In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

                                With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

                                12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

                                2496 M S Springer et al Mammalian historical biogeography

                                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

                                MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

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                                4 Springer M S Meredith R W Eizirik E Teeling

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                                23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

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                                tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

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                                evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

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                                relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

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                                79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

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                                history of hystricognathous rodents Proc Natl AcadSci USA 106 16 722ndash16 727 (doi101073pnas0908702106)

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                                the Rodentia (Mammalia) from the Late Paleocene tothe Miocene phylogenetic consequences C R AcadSci II A 326 439ndash444

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                                American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

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                                Gunnell amp M D Uhen) vol 2 pp 391ndash405 CambridgeUK Cambridge University Press

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                                1023A1020512529767)89 Galliari F C Carlini A A amp Sanchez-Villagra M R

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                                UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

                                amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

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                                Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

                                99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

                                100 Antoine P-O et al 2007 The middle Miocene (Laven-

                                tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

                                Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

                                Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

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                                Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

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                                record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

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                                Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

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                                Press108 Bajpai S Kay R F Williams B A Das D P

                                Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

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                                109 Beard K C Qi T Dawson M R Wang B amp Li C1994 A diverse new primate fauna from middle Eocenefissure-fillings in southeastern China Nature 368

                                604ndash609 (doi101038368604a0)110 Orliac M Boisserie J-R MacLatchy L amp Lihoreau

                                F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

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                                The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

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                                E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

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                                ary Science 295 2062ndash2065 (doi101126science1068700)

                                115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

                                earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

                                116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

                                117 Colbert M W amp Schoch R M 1998 Tapiroidea and

                                other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

                                118 Dashzeveg D 1996 Some carnivorous mammals fromthe Paleogene of the Eastern Gobi Desert Mongoliaand the application of Oligocene carnivores to strati-graphic correlation Am Mus Novit 3179 1ndash14

                                119 Hunt Jr R M 1998 Evolution of the aeluroid Carni-vora diversity of the earliest aeluroids from Eurasia(Quercy Hsanda-Gol) and the origin of felids AmMus Novit 3252 1ndash65

                                120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

                                cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

                                121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

                                122 Huelsenbeck J P amp Ronquist F 2001 MrBAYESBayesian inference of phylogenetic trees Bioinformatics17 754ndash755 (doi101093bioinformatics178754)

                                123 Ronquist F amp Huelsenbeck J P 2003 MrBayes 3Bayesian phylogenetic inference under mixed modelsBioinformatics 19 1572ndash1574 (doi101093bioinfor-maticsbtg180)

                                2500 M S Springer et al Mammalian historical biogeography

                                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                124 Carroll R L 1988 Vertebrate paleontology and evolutionNew York NY W H Freeman and Company

                                125 Asher R J Novacek M J amp Geisler J G 2003

                                Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

                                126 Zack S P Penkrot T A Bloch J I amp Rose K D

                                2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

                                127 Tabuce R Marivaux L Adaci M Bensalah M

                                Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

                                128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

                                129 Simpson G G 1951 History of the fauna of Latin

                                America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

                                130 Simpson G G 1978 Early mammals in South Amer-ica fact controversy and mystery Proc Am PhilSoc 122 318ndash328

                                131 Archibald J D 1996 Fossil evidence for a Late Cretac-eous origin of lsquohoofedrsquo mammals Science 272 1150ndash1153 (doi101126science27252651150)

                                132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

                                133 Cifelli R L amp Davis B M 2003 Marsupial origins

                                Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

                                2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

                                135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

                                eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

                                136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

                                pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

                                W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

                                260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

                                N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

                                139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

                                Phil Trans R Soc B (2011)

                                140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

                                141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

                                0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

                                roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

                                of mammals Proc Natl Acad Sci USA 106 5235ndash5240

                                143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

                                144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

                                145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

                                146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

                                73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

                                dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

                                148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

                                108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

                                dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                                37091305110239)150 McCall R 1997 Implications of recent geological

                                investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

                                151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

                                152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

                                153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

                                154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

                                155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

                                caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

                                156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

                                Mammalian historical biogeography M S Springer et al 2501

                                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

                                157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

                                158 Rowe D L Dunn K A Adkins R M amp Honeycutt

                                R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

                                159 Beard K C Wang B Dawson M Huang X amp

                                Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

                                160 Beard K C amp Wang J 2004 The eosimiid primates

                                (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

                                161 Arnason U Gullberg A Schweizer B A amp Janke A

                                2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

                                162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

                                163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

                                164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

                                513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

                                ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

                                AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

                                diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

                                167 Gunnell G F amp Simmons N B 2005 Fossil evidence

                                and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                                168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                                Wyoming and the evolution of flight and echolocationNature 451 818ndash822

                                169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

                                paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                                170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

                                171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

                                ian evolution Science 302 1934ndash1939 (doi101126science1090718)

                                172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

                                Phil Trans R Soc B (2011)

                                dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                                173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

                                D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

                                174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

                                from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                                175 Cifelli R L 1993 Theria of metatherianndasheutherian

                                grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                                176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                                177 Wible J R 1990 Late Cretaceous marsupial petrosal

                                bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                                178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                                pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                                179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                                of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                                180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                                2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                                181 Beck R M Godthelp H Weisbecker V Archer M

                                amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                                182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                                Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                                183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                                for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                                184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                                implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                                185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                                phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                                186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                                marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                                187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                                2502 M S Springer et al Mammalian historical biogeography

                                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                                188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                                189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                                190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                                Phil Trans R Soc B (2011)

                                Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                                191 Springer M S amp Krajewski C 2009 Monotremes

                                (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                                192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                                53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                                In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                                194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                                • The historical biogeography of Mammalia
                                  • Introduction
                                  • Phylogeny reconstruction
                                  • Molecular dating analyses
                                  • Ancestral area reconstruction
                                  • Box 1
                                  • Ancestral area chronograms and palaeogeography
                                  • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                                  • Placental biogeography
                                  • The importance of dispersal
                                  • Bat biogeography
                                  • Marsupial biogeography
                                  • Monotreme biogeography
                                  • Conclusions
                                  • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
                                  • REFERENCES

                                  PacificOcean

                                  NorthAtlanticOcean

                                  SouthAtlantic Ocean

                                  IndianOcean

                                  NorthAmerica

                                  SouthAmerica

                                  Africa

                                  Antarctica

                                  Australia

                                  Asia

                                  Europe

                                  PacificOcean1b

                                  1b

                                  1a3

                                  2

                                  Middle Eocene

                                  Figure 6 Alternate hypotheses for the dispersal of platyrrhine and caviomorph ancestors respectively from AfricaAsia toSouth America Hypothesis 1 transoceanic dispersal (1a) from Africa to South America possibly with an earlier dispersalfrom Asia to Africa (1b) if origination occurred in Asia Hypothesis 2 dispersal from Asia through North America to

                                  South America Hypothesis 3 dispersal from Asia to South America via Australia and Antarctica after two transoceanic cross-ings Middle Eocene world map based on Palaeomap Project (httpwwwscotsecomnewpage9htm)

                                  Mammalian historical biogeography M S Springer et al 2493

                                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                  Among anthropoids Old World catarrhines (egmacaques apes) and South American platyrrhines(eg marmosets capuchins spider monkeys) are reci-procally monophyletic sister taxa The oldestanthropoid fossils are from the Old World althoughwhether the most recent common ancestor of Anthro-poidea is African or Asian is uncertain [108159160]Poux et al [155] dated the split between catarrhinesand platyrrhines at approximately 37 Ma and thebase of Platyrrhini at approximately 17 Ma

                                  The vicariant separation of Africa and South Amer-ica (110ndash100 Ma) is too old to explain the separationof either Phiomorpha and Caviomorpha or Catarrhiniand Platyrrhini Similarly Arnason et alrsquos [161]hypothesis of land bridge dispersal during the LateCretaceousndashEarly Palaeocene is too old for relaxedclock dates which instead rule out the colonizationof South America by Caviomorpha and Platyrrhiniprior to the Eocene Other hypotheses for the coloni-zation of South America by caviomorphs andorplatyrrhines include (i) trans-Atlantic dispersal fromAfrica to South America [162] (ii) dispersal fromAsia through North America to South America[163164] and (iii) dispersal from Asia to SouthAmerica via Australia and Antarctica after two oceancrossings (figure 6) [165]

                                  Most workers favour transoceanic dispersal fromAfrica to South America for both Caviomorpha and Pla-tyrrhini Dispersal through Asia and North America is anintriguing possibility but palaeontological data provideno support for migrations through North America Simi-larly dispersal from Asia to South America throughAustralia and Antarctica lacks palaeontological supportrequires multiple transoceanic dispersals and becomeseven less likely after the Eocene because of the severedconnection between Antarctica and South Americaand climatic deterioration in Antarctica associated withthe opening of the Drake Passage In view of

                                  Phil Trans R Soc B (2011)

                                  phylogenetic geological palaeontological and moleculardata trans-Atlantic dispersal is the most likely scenariofor colonization of South America by caviomorphs andplatyrrhines

                                  9 BAT BIOGEOGRAPHYIn contrast to other mammals bats are capable ofpowered flight which has profoundly enhanced theirdispersal capabilities The occurrence of seven differ-ent families of extant bats in Madagascar includingthe endemic sucker-footed bats (Family Myzopodi-dae) and of another family in New Zealand theshort-tailed bats (Family Mystacinidae) providesabundant evidence of the dispersal capabilities ofbats [166]

                                  The oldest bat fossils are from the Early Eocene ofNorth America [167168] Early Eocene bats are alsoknown from Europe Africa and Australia [167] Theprevalent view is that bats originated in Laurasia buta minority view holds that bats originated in Gond-wana [169170] Teeling et al [13] reconstructedancestral areas for bats with (i) multistate-coded datafor the current global distribution of each lineagewith nine different character states (Europe AfricaAsia Madagascar Australia New Zealand NorthAmerica Central thorn South America and West Indies)and (ii) binary-coded data for the earliest fossil occur-rence for each lineage (Laurasia versus Gondwana)Teeling et alrsquos [13] results suggested North Americaor Laurasia as the ancestral area for bats and AsiaEurope or Laurasia as the ancestral area for both Yinp-terochiroptera and Yangochiroptera Eick et al [12]used DIVA [33] to estimate ancestral areas for Chirop-tera and its subclades and coded areas based oncurrent distributions for each family Seven areas(Africa Asia Australia Europe North AmericaSouth America and New Zealand) were recognized

                                  Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

                                  or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

                                  node number (figure 7) Eick et al [12] re-analysis

                                  1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

                                  ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

                                  3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

                                  4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

                                  9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

                                  10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

                                  11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

                                  12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

                                  ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

                                  13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

                                  ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

                                  BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

                                  14 A A B C AC BC ABC15 A A B C AC BC

                                  16 A A B C17 A A B AC BC ABC

                                  2494 M S Springer et al Mammalian historical biogeography

                                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                  and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

                                  We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

                                  Phil Trans R Soc B (2011)

                                  Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

                                  FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

                                  1

                                  2

                                  3

                                  4

                                  56

                                  7

                                  8

                                  9

                                  10

                                  11

                                  1213

                                  14

                                  1516

                                  17

                                  EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

                                  Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

                                  Mammalian historical biogeography M S Springer et al 2495

                                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                  with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

                                  10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

                                  In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

                                  Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

                                  Phil Trans R Soc B (2011)

                                  sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

                                  In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

                                  11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

                                  In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

                                  With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

                                  12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

                                  2496 M S Springer et al Mammalian historical biogeography

                                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                  together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

                                  MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

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                                  mammalian biodiversity Phil Trans R Soc B 366

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                                  J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

                                  Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

                                  4 Springer M S Meredith R W Eizirik E Teeling

                                  E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

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                                  9 Douady C J Catzeflis F Raman J Springer M S

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                                  0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

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                                  Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

                                  16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

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                                  nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

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                                  based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

                                  20 Meredith R W Westerman M amp Springer M S 2009A phylogeny of Diprotodontia (Marsupialia) based onsequences for five nuclear genes Mol Phylogenet Evol51 554ndash571 (doi101016jympev200902009)

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                                  23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

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                                  27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

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                                  credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

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                                  in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

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                                  local extinction and cladogenesis Syst Biol 57 4ndash14 (doi10108010635150701883881)

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                                  W W Waddell V G Amrine H M amp Stanhope

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                                  55 Stanhope M J Madsen O Waddell V G Cleven

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                                  56 Stanhope M J Waddell V G Madsen O de Jong

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                                  61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

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                                  tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

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                                  evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

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                                  cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

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                                  molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

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                                  Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

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                                  Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

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                                  relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

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                                  78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

                                  79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

                                  Phil Trans R Soc B (2011)

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                                  189ndash194 (doi1016710272-4634(2007)27[189EPSOTO]20CO2)

                                  81 Sallam H M Seiffert E R Steiper M E amp SimonsE L 2009 Fossil and molecular evidence constrainscenarios for the early evolutionary and biogeographic

                                  history of hystricognathous rodents Proc Natl AcadSci USA 106 16 722ndash16 727 (doi101073pnas0908702106)

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                                  the Rodentia (Mammalia) from the Late Paleocene tothe Miocene phylogenetic consequences C R AcadSci II A 326 439ndash444

                                  83 Vucetich M G Verzi D H amp Hartenberger L 1999Review and analysis of the radiation of the South

                                  American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

                                  84 Flynn L J amp Jacobs L L 2008 Castoridea In Evolution oftertiary mammals of North America small mammals xenar-thrans and marine mammals (eds C M Janis G F

                                  Gunnell amp M D Uhen) vol 2 pp 391ndash405 CambridgeUK Cambridge University Press

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                                  implications Antarctic Sci 6 3ndash15 (doi101017S0954102094000027)

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                                  Xenarthra Mammalia) from La Meseta FormationSeymour Island West Antarctica Am Mus Novit3689 1ndash21 (doi1012067031)

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                                  the Myrmecophagidae (Mammalia Xenarthra Vermi-lingua) and relationship of Eurotamandua to theVermilingua J Mamm Evol 5 237ndash265 (doi10

                                  1023A1020512529767)89 Galliari F C Carlini A A amp Sanchez-Villagra M R

                                  2010 Evolution of the axial skeleton in armadillos(Mammalia Dasypodidae) Mamm Biol 75 326ndash333 (doi101016jmambio200903014)

                                  90 Poljak S Confalonieri V Fasanella M Gabrielli Mamp Lizarralde M S 2010 Phylogeography of the arma-dillo Chaetophractus villosus (Dasypodidae Xenarthra)post-glacial range expansion from Pampas to Patagonia

                                  (Argentina) Mol Phylogenet Evol 55 38ndash46 (doi101016jympev200912021)

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                                  92 Gunnell G F Bown T M Hutchinson J H ampBloch J I 2008 Lipotyphla In Evolution of Tertiarymammals of North America small mammals xenarthransand marine mammals vol 2 (eds C M Janis G FGunnell amp M D Uhen) pp 89ndash125 Cambridge

                                  UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

                                  amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

                                  94 Tabuce R Asher R J amp Lehmann T 2008 Afrother-ian mammals a review of current data Mammalia 722ndash14 (doi101515MAMM2008004)

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                                  beds In Lothagam the dawn of humanity in EasternAfrica (eds J Leakey amp J Harris) pp 363ndash368New York NY Columbia University Press

                                  97 Flynn L J amp Jacobs L L 2008 Aplodontia In Evol-ution of tertiary mammals of North America smallmammals xenarthrans and marine mammals vol 2(eds C M Janis G F Gunnell amp M D Uhen) pp377ndash390 Cambridge UK Cambridge UniversityPress

                                  98 Marivaux L Ducrocq S Jaeger J-J Marandat BSudre J Chaimanee Y Tun S T Htoon W ampSoe A N 2005 New remains of Pondaungimysanomaluropsis (Rodentia Anomaluroidea) from thelatest middle Eocene Pondaung Formation of

                                  Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

                                  99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

                                  100 Antoine P-O et al 2007 The middle Miocene (Laven-

                                  tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

                                  Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

                                  Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

                                  (doi1016710272-4634(2007)27[683OADOTO]20CO2)

                                  102 Frailey C D amp Campbell K E 2004 The rodents ofthe Santa Rosa Local Fauna In The Paleogene mamma-lian fauna of Santa Rosa Amazonian Peru (ed K E

                                  Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

                                  103 Martin T 2004 Evolution of incisor enamel micro-structure in Lagomorpha J Vertebr Paleontol 24

                                  411ndash426 (doi1016712513)104 Lopez-Martinez N 2008 The lagomorph fossil

                                  record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

                                  105 Marivaux L Bocat L Chaimanee Y Jaeger J-JMarandat B Srisuk P Tafforeau P Yamee C ampWelcomme L 2006 Cynocephalid dermopterans

                                  from the Palaeogene of South Asia (Thailand Myan-mar and Pakistan) systematic evolutionary andpalaeobiogeographic implications Zool Scripta 35395ndash420 (doi101111j1463-6409200600235x)

                                  106 Tong Y 1988 Fossil tree shrews from the Eocene

                                  Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

                                  107 Godfrey L R amp Jungers W L 2002 Quaternary fossillemurs In The primate fossil record (ed W C Hartwig)pp 97ndash121 Cambridge UK Cambridge University

                                  Press108 Bajpai S Kay R F Williams B A Das D P

                                  Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

                                  Phil Trans R Soc B (2011)

                                  109 Beard K C Qi T Dawson M R Wang B amp Li C1994 A diverse new primate fauna from middle Eocenefissure-fillings in southeastern China Nature 368

                                  604ndash609 (doi101038368604a0)110 Orliac M Boisserie J-R MacLatchy L amp Lihoreau

                                  F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

                                  111 Honey J G Harrison J A Prothero D R ampStevens M S 1998 Camelidae In Evolution of Tertiarymammals of North America terrestrial carnivoresungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp439ndash462 Cambridge UK Cambridge University Press

                                  112 Metais G amp Vislobokova I 2008 Basal ruminants In

                                  The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

                                  113 Harris J M amp Li-Ping L 2008 Superfamily SuoideaIn The evolution of artiodactyls (eds D R Prothero amp S

                                  E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

                                  114 Bowen G J Clyde W C Koch P L Ting SAlroy J Tsubamoto T Wang Y amp Wang Y 2002Mammalian dispersal at the PaleoceneEocene bound-

                                  ary Science 295 2062ndash2065 (doi101126science1068700)

                                  115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

                                  earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

                                  116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

                                  117 Colbert M W amp Schoch R M 1998 Tapiroidea and

                                  other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

                                  118 Dashzeveg D 1996 Some carnivorous mammals fromthe Paleogene of the Eastern Gobi Desert Mongoliaand the application of Oligocene carnivores to strati-graphic correlation Am Mus Novit 3179 1ndash14

                                  119 Hunt Jr R M 1998 Evolution of the aeluroid Carni-vora diversity of the earliest aeluroids from Eurasia(Quercy Hsanda-Gol) and the origin of felids AmMus Novit 3252 1ndash65

                                  120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

                                  cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

                                  121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

                                  122 Huelsenbeck J P amp Ronquist F 2001 MrBAYESBayesian inference of phylogenetic trees Bioinformatics17 754ndash755 (doi101093bioinformatics178754)

                                  123 Ronquist F amp Huelsenbeck J P 2003 MrBayes 3Bayesian phylogenetic inference under mixed modelsBioinformatics 19 1572ndash1574 (doi101093bioinfor-maticsbtg180)

                                  2500 M S Springer et al Mammalian historical biogeography

                                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                  124 Carroll R L 1988 Vertebrate paleontology and evolutionNew York NY W H Freeman and Company

                                  125 Asher R J Novacek M J amp Geisler J G 2003

                                  Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

                                  126 Zack S P Penkrot T A Bloch J I amp Rose K D

                                  2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

                                  127 Tabuce R Marivaux L Adaci M Bensalah M

                                  Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

                                  128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

                                  129 Simpson G G 1951 History of the fauna of Latin

                                  America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

                                  130 Simpson G G 1978 Early mammals in South Amer-ica fact controversy and mystery Proc Am PhilSoc 122 318ndash328

                                  131 Archibald J D 1996 Fossil evidence for a Late Cretac-eous origin of lsquohoofedrsquo mammals Science 272 1150ndash1153 (doi101126science27252651150)

                                  132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

                                  133 Cifelli R L amp Davis B M 2003 Marsupial origins

                                  Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

                                  2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

                                  135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

                                  eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

                                  136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

                                  pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

                                  W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

                                  260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

                                  N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

                                  139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

                                  Phil Trans R Soc B (2011)

                                  140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

                                  141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

                                  0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

                                  roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

                                  of mammals Proc Natl Acad Sci USA 106 5235ndash5240

                                  143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

                                  144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

                                  145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

                                  146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

                                  73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

                                  dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

                                  148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

                                  108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

                                  dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                                  37091305110239)150 McCall R 1997 Implications of recent geological

                                  investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

                                  151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

                                  152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

                                  153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

                                  154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

                                  155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

                                  caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

                                  156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

                                  Mammalian historical biogeography M S Springer et al 2501

                                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                  revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

                                  157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

                                  158 Rowe D L Dunn K A Adkins R M amp Honeycutt

                                  R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

                                  159 Beard K C Wang B Dawson M Huang X amp

                                  Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

                                  160 Beard K C amp Wang J 2004 The eosimiid primates

                                  (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

                                  161 Arnason U Gullberg A Schweizer B A amp Janke A

                                  2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

                                  162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

                                  163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

                                  164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

                                  513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

                                  ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

                                  AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

                                  diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

                                  167 Gunnell G F amp Simmons N B 2005 Fossil evidence

                                  and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                                  168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                                  Wyoming and the evolution of flight and echolocationNature 451 818ndash822

                                  169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

                                  paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                                  170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

                                  171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

                                  ian evolution Science 302 1934ndash1939 (doi101126science1090718)

                                  172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

                                  Phil Trans R Soc B (2011)

                                  dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                                  173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

                                  D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

                                  174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

                                  from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                                  175 Cifelli R L 1993 Theria of metatherianndasheutherian

                                  grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                                  176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                                  177 Wible J R 1990 Late Cretaceous marsupial petrosal

                                  bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                                  178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                                  pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                                  179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                                  of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                                  180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                                  2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                                  181 Beck R M Godthelp H Weisbecker V Archer M

                                  amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                                  182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                                  Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                                  183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                                  for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                                  184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                                  implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                                  185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                                  phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                                  186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                                  marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                                  187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                                  2502 M S Springer et al Mammalian historical biogeography

                                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                  mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                                  188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                                  189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                                  190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                                  Phil Trans R Soc B (2011)

                                  Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                                  191 Springer M S amp Krajewski C 2009 Monotremes

                                  (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                                  192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                                  53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                                  In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                                  194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                                  • The historical biogeography of Mammalia
                                    • Introduction
                                    • Phylogeny reconstruction
                                    • Molecular dating analyses
                                    • Ancestral area reconstruction
                                    • Box 1
                                    • Ancestral area chronograms and palaeogeography
                                    • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                                    • Placental biogeography
                                    • The importance of dispersal
                                    • Bat biogeography
                                    • Marsupial biogeography
                                    • Monotreme biogeography
                                    • Conclusions
                                    • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
                                    • REFERENCES

                                    Table 6 A comparison of ancestral area reconstructions for bats based on DIVA analyses Eick et al [12] coded the presence

                                    or absence of extant bat families in seven different areas and performed DIVA analyses with no constraints on the maximumnumber of areas We re-analysed Eick et alrsquos [12] dataset with DIVA using the same settings reported by these authorsAfrica A Asia B Australia C Europe D North America E South America F New Zealand G

                                    node number (figure 7) Eick et al [12] re-analysis

                                    1 A ABCEF ABDEF ABCDEF ABEFG ABCEFG ABDEFG ABCDEFG2 A ACEF BCEF ABCEF DEF ADEF BDEF ABDEF ACDEF BCDEF

                                    ABCDEF AEFG ABEFG ACEFG BCEFG ABCEFG DEFGADEFG BDEFG ABDEFG ACDEFG BCDEFG ABCDEFG

                                    3 AE AF E AE BE CE ACE BCE ABCE F AF BF CF ACF BCF ABCFCEF ACEF BCEF ABCEF AG BG CG ACG BCG ABCG AEGBEG CEG ACEG BCEG ABCEG AFG BFG CFG ACFG BCFGABCFG AEFG BEFG CEFG ACEFG BCEFG ABCEFG

                                    4 E F E F EG FG EFG5 E F E F6 E F E F7 E F E F8 EG FG EFG EG FG EFG

                                    9 A A B AC BC ABC AE BE ABE ACE BCE ABCE AF BF ABF ACFBCF ABCF AEF BEF ABEF ACEF BCEF

                                    10 A A AC AD ACD ABCD ACE ADE ACDE ABCDE ACF ADFACDF ABCDF ACEF ADEF ACDEF ABCDEF ACDEG ABCDEGACDFG ABCDFG ACDEFG ABCDEFG

                                    11 AE AF AEF AE CE DE CDE ACDE BCDE ABCDE AF CF DF CDF ACDFBCDF ABCDF AEF CEF DEF CDEF ACDEF BCDEF ABCDEFCDEG ACDEG BCDEG ABCDEG CDFG ACDFG BCDFGABCDFG CDEFG ACDEFG BCDEFG ABCDEFG

                                    12 A A C D CD ACD BCD ABCD CDE ACDE BCDE ABCDE CDF

                                    ACDF BCDF ABCDF CDEF ACDEF BCDEF ABCDEF CDGACDG BCDG ABCDG CDEG ACDEG BCDEG ABCDEGCDFG ACDFG BCDFG ABCDFG CDEFG ACDEFG BCDEFGABCDEFG

                                    13 A A B C D AG BG ABG CG ACG BCG ABCG DG ADG BDG

                                    ABDG CDG ACDG BCDG ABCDG AEG BEG ABEG CEGACEG BCEG ABCEG DEG ADEG BDEG ABDEG CDEGACDEG BCDEG ABCDEG AFG BFG ABFG CFG ACFGBCFG ABCFG DFG ADFG BDFG ABDFG CDFG ACDFG

                                    BCDFG ABCDFG AEFG BEFG ABEFG CEFG ACEFG BCEFGABCEFG DEFG ADEFG BDEFG ABDEFG CDEFG ACDEFGBCDEFG ABCDEFG

                                    14 A A B C AC BC ABC15 A A B C AC BC

                                    16 A A B C17 A A B AC BC ABC

                                    2494 M S Springer et al Mammalian historical biogeography

                                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                    and Africa was reconstructed as the ancestral area forthe most recent common ancestors of ChiropteraYinpterochiroptera and Yangochiroptera Lim [47]used parsimony to reconstruct ancestral areas andalso recovered Africa as the ancestral area forYangochiroptera and its deepest nodes

                                    We recovered more inclusive ancestral areas forChiroptera Yinpterochiroptera and Yangochiropterawhen we performed analyses with DIVA using thesame data and settings that were reported by Eicket al [12] (figure 7 and table 6) The reconstructionfor the base of Chiroptera was equivocal and includedseven different possibilities all of which were equallyparsimonious based on DIVArsquos criteria for minimiz-ing dispersal and extinction (figure 7 and table 6)Each of these reconstructions included at least fiveareas and four areas (Africa Asia North Americaand South America) were common to all sevenreconstructions

                                    Phil Trans R Soc B (2011)

                                    Among the most comprehensive studies in mamma-lian historical biogeography are Limrsquos [4647] analysesof South American bats Ancestral reconstructions pro-vided evidence for multiple dispersals from Africa toSouth America One dispersal occurred in Noctilionoi-dea (Eocene approx 42 Ma) and another occurred inEmballonuroidea (Oligocene approx 30 Ma) Vesperti-lionoidea have a more complex history that involvesnumerous independent dispersals from Africa(Eocene earliest event approx 50 Ma) as well asfrom North America Lim [46] used PACT to examineevolutionary processes that have been important in thediversification of South American emballonurids Hisgeneral area cladogram revealed a complex historywith multiple vicariant within-area and dispersalevents all playing a role Within-area speciation duringthe Miocene particularly in the northern Amazonarea was the most important diversification process inthis group Lim [47] correlated Miocene speciation

                                    FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

                                    1

                                    2

                                    3

                                    4

                                    56

                                    7

                                    8

                                    9

                                    10

                                    11

                                    1213

                                    14

                                    1516

                                    17

                                    EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

                                    Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

                                    Mammalian historical biogeography M S Springer et al 2495

                                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                    with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

                                    10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

                                    In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

                                    Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

                                    Phil Trans R Soc B (2011)

                                    sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

                                    In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

                                    11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

                                    In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

                                    With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

                                    12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

                                    2496 M S Springer et al Mammalian historical biogeography

                                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                    together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

                                    MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

                                    REFERENCES1 Jones K E amp Safi K 2011 Ecology and evolution of

                                    mammalian biodiversity Phil Trans R Soc B 366

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                                    J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

                                    Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

                                    4 Springer M S Meredith R W Eizirik E Teeling

                                    E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

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                                    9 Douady C J Catzeflis F Raman J Springer M S

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                                    0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

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                                    Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

                                    16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

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                                    nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

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                                    based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

                                    20 Meredith R W Westerman M amp Springer M S 2009A phylogeny of Diprotodontia (Marsupialia) based onsequences for five nuclear genes Mol Phylogenet Evol51 554ndash571 (doi101016jympev200902009)

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                                    23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

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                                    credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

                                    29 Brown R P amp Yang Z 2010 Bayesian dating of shal-low phylogenies with a relaxed molecular clock SystBiol 59 119ndash131 (doi101093sysbiosyp082)

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                                    in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

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                                    version 3 analysis of phylogeny and character evolutionSunderland MA Sinauer Associates

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                                    ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

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                                    phy of bats in South America Chiroptera Neotropical15 391ndash410

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                                    Cretaceous terrestrial vertebrates from Madagascarimplications for Latin American biogeography AnnMo Bot Gard 93 178ndash208 (doi1034170026-6493(2006)93[178LCTVFM]20CO2)

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                                    W W Waddell V G Amrine H M amp Stanhope

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                                    54 Springer M S Murphy W J Eizirik E amp OrsquoBrienS J 2005 Molecular evidence for major placental

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                                    55 Stanhope M J Madsen O Waddell V G Cleven

                                    G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

                                    56 Stanhope M J Waddell V G Madsen O de Jong

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                                    61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

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                                    tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

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                                    evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

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                                    65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

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                                    cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

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                                    molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

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                                    Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

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                                    Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

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                                    In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

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                                    relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

                                    77 Wesley-Hunt G D amp Flynn J J 2005 Phylogeny ofthe Carnivora basal relationships among the carnivora-morphans and assessment of the position oflsquoMiacoidearsquo relative to Carnivora J Syst Palaeontol 31ndash28 (doi101017S1477201904001518)

                                    78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

                                    79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

                                    Phil Trans R Soc B (2011)

                                    80 Storch G amp Seiffert C 2007 Extraordinarily preservedspecimen of the oldest known glirid from the middleEocene of Messel (Rodentia) J Vertebr Paleontol 27

                                    189ndash194 (doi1016710272-4634(2007)27[189EPSOTO]20CO2)

                                    81 Sallam H M Seiffert E R Steiper M E amp SimonsE L 2009 Fossil and molecular evidence constrainscenarios for the early evolutionary and biogeographic

                                    history of hystricognathous rodents Proc Natl AcadSci USA 106 16 722ndash16 727 (doi101073pnas0908702106)

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                                    the Rodentia (Mammalia) from the Late Paleocene tothe Miocene phylogenetic consequences C R AcadSci II A 326 439ndash444

                                    83 Vucetich M G Verzi D H amp Hartenberger L 1999Review and analysis of the radiation of the South

                                    American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

                                    84 Flynn L J amp Jacobs L L 2008 Castoridea In Evolution oftertiary mammals of North America small mammals xenar-thrans and marine mammals (eds C M Janis G F

                                    Gunnell amp M D Uhen) vol 2 pp 391ndash405 CambridgeUK Cambridge University Press

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                                    implications Antarctic Sci 6 3ndash15 (doi101017S0954102094000027)

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                                    Xenarthra Mammalia) from La Meseta FormationSeymour Island West Antarctica Am Mus Novit3689 1ndash21 (doi1012067031)

                                    87 McKenna M C amp Bell S K 1997 Classification ofmammals above the species level New York NY Colum-

                                    bia University Press88 Gaudin T J amp Branham D G 1998 The phylogeny of

                                    the Myrmecophagidae (Mammalia Xenarthra Vermi-lingua) and relationship of Eurotamandua to theVermilingua J Mamm Evol 5 237ndash265 (doi10

                                    1023A1020512529767)89 Galliari F C Carlini A A amp Sanchez-Villagra M R

                                    2010 Evolution of the axial skeleton in armadillos(Mammalia Dasypodidae) Mamm Biol 75 326ndash333 (doi101016jmambio200903014)

                                    90 Poljak S Confalonieri V Fasanella M Gabrielli Mamp Lizarralde M S 2010 Phylogeography of the arma-dillo Chaetophractus villosus (Dasypodidae Xenarthra)post-glacial range expansion from Pampas to Patagonia

                                    (Argentina) Mol Phylogenet Evol 55 38ndash46 (doi101016jympev200912021)

                                    91 Sige B Crochet J-Y amp Insole A 1977 Les plusvielles taupes Geobios Mem Spec 1 141ndash157(doi101016S0016-6995(77)80014-4)

                                    92 Gunnell G F Bown T M Hutchinson J H ampBloch J I 2008 Lipotyphla In Evolution of Tertiarymammals of North America small mammals xenarthransand marine mammals vol 2 (eds C M Janis G FGunnell amp M D Uhen) pp 89ndash125 Cambridge

                                    UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

                                    amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

                                    94 Tabuce R Asher R J amp Lehmann T 2008 Afrother-ian mammals a review of current data Mammalia 722ndash14 (doi101515MAMM2008004)

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                                    96 Milledge S 2003 Fossil aardvarks from the Lothagam

                                    beds In Lothagam the dawn of humanity in EasternAfrica (eds J Leakey amp J Harris) pp 363ndash368New York NY Columbia University Press

                                    97 Flynn L J amp Jacobs L L 2008 Aplodontia In Evol-ution of tertiary mammals of North America smallmammals xenarthrans and marine mammals vol 2(eds C M Janis G F Gunnell amp M D Uhen) pp377ndash390 Cambridge UK Cambridge UniversityPress

                                    98 Marivaux L Ducrocq S Jaeger J-J Marandat BSudre J Chaimanee Y Tun S T Htoon W ampSoe A N 2005 New remains of Pondaungimysanomaluropsis (Rodentia Anomaluroidea) from thelatest middle Eocene Pondaung Formation of

                                    Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

                                    99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

                                    100 Antoine P-O et al 2007 The middle Miocene (Laven-

                                    tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

                                    Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

                                    Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

                                    (doi1016710272-4634(2007)27[683OADOTO]20CO2)

                                    102 Frailey C D amp Campbell K E 2004 The rodents ofthe Santa Rosa Local Fauna In The Paleogene mamma-lian fauna of Santa Rosa Amazonian Peru (ed K E

                                    Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

                                    103 Martin T 2004 Evolution of incisor enamel micro-structure in Lagomorpha J Vertebr Paleontol 24

                                    411ndash426 (doi1016712513)104 Lopez-Martinez N 2008 The lagomorph fossil

                                    record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

                                    105 Marivaux L Bocat L Chaimanee Y Jaeger J-JMarandat B Srisuk P Tafforeau P Yamee C ampWelcomme L 2006 Cynocephalid dermopterans

                                    from the Palaeogene of South Asia (Thailand Myan-mar and Pakistan) systematic evolutionary andpalaeobiogeographic implications Zool Scripta 35395ndash420 (doi101111j1463-6409200600235x)

                                    106 Tong Y 1988 Fossil tree shrews from the Eocene

                                    Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

                                    107 Godfrey L R amp Jungers W L 2002 Quaternary fossillemurs In The primate fossil record (ed W C Hartwig)pp 97ndash121 Cambridge UK Cambridge University

                                    Press108 Bajpai S Kay R F Williams B A Das D P

                                    Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

                                    Phil Trans R Soc B (2011)

                                    109 Beard K C Qi T Dawson M R Wang B amp Li C1994 A diverse new primate fauna from middle Eocenefissure-fillings in southeastern China Nature 368

                                    604ndash609 (doi101038368604a0)110 Orliac M Boisserie J-R MacLatchy L amp Lihoreau

                                    F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

                                    111 Honey J G Harrison J A Prothero D R ampStevens M S 1998 Camelidae In Evolution of Tertiarymammals of North America terrestrial carnivoresungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp439ndash462 Cambridge UK Cambridge University Press

                                    112 Metais G amp Vislobokova I 2008 Basal ruminants In

                                    The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

                                    113 Harris J M amp Li-Ping L 2008 Superfamily SuoideaIn The evolution of artiodactyls (eds D R Prothero amp S

                                    E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

                                    114 Bowen G J Clyde W C Koch P L Ting SAlroy J Tsubamoto T Wang Y amp Wang Y 2002Mammalian dispersal at the PaleoceneEocene bound-

                                    ary Science 295 2062ndash2065 (doi101126science1068700)

                                    115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

                                    earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

                                    116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

                                    117 Colbert M W amp Schoch R M 1998 Tapiroidea and

                                    other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

                                    118 Dashzeveg D 1996 Some carnivorous mammals fromthe Paleogene of the Eastern Gobi Desert Mongoliaand the application of Oligocene carnivores to strati-graphic correlation Am Mus Novit 3179 1ndash14

                                    119 Hunt Jr R M 1998 Evolution of the aeluroid Carni-vora diversity of the earliest aeluroids from Eurasia(Quercy Hsanda-Gol) and the origin of felids AmMus Novit 3252 1ndash65

                                    120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

                                    cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

                                    121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

                                    122 Huelsenbeck J P amp Ronquist F 2001 MrBAYESBayesian inference of phylogenetic trees Bioinformatics17 754ndash755 (doi101093bioinformatics178754)

                                    123 Ronquist F amp Huelsenbeck J P 2003 MrBayes 3Bayesian phylogenetic inference under mixed modelsBioinformatics 19 1572ndash1574 (doi101093bioinfor-maticsbtg180)

                                    2500 M S Springer et al Mammalian historical biogeography

                                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                    124 Carroll R L 1988 Vertebrate paleontology and evolutionNew York NY W H Freeman and Company

                                    125 Asher R J Novacek M J amp Geisler J G 2003

                                    Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

                                    126 Zack S P Penkrot T A Bloch J I amp Rose K D

                                    2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

                                    127 Tabuce R Marivaux L Adaci M Bensalah M

                                    Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

                                    128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

                                    129 Simpson G G 1951 History of the fauna of Latin

                                    America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

                                    130 Simpson G G 1978 Early mammals in South Amer-ica fact controversy and mystery Proc Am PhilSoc 122 318ndash328

                                    131 Archibald J D 1996 Fossil evidence for a Late Cretac-eous origin of lsquohoofedrsquo mammals Science 272 1150ndash1153 (doi101126science27252651150)

                                    132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

                                    133 Cifelli R L amp Davis B M 2003 Marsupial origins

                                    Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

                                    2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

                                    135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

                                    eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

                                    136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

                                    pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

                                    W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

                                    260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

                                    N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

                                    139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

                                    Phil Trans R Soc B (2011)

                                    140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

                                    141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

                                    0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

                                    roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

                                    of mammals Proc Natl Acad Sci USA 106 5235ndash5240

                                    143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

                                    144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

                                    145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

                                    146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

                                    73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

                                    dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

                                    148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

                                    108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

                                    dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                                    37091305110239)150 McCall R 1997 Implications of recent geological

                                    investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

                                    151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

                                    152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

                                    153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

                                    154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

                                    155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

                                    caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

                                    156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

                                    Mammalian historical biogeography M S Springer et al 2501

                                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                    revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

                                    157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

                                    158 Rowe D L Dunn K A Adkins R M amp Honeycutt

                                    R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

                                    159 Beard K C Wang B Dawson M Huang X amp

                                    Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

                                    160 Beard K C amp Wang J 2004 The eosimiid primates

                                    (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

                                    161 Arnason U Gullberg A Schweizer B A amp Janke A

                                    2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

                                    162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

                                    163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

                                    164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

                                    513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

                                    ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

                                    AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

                                    diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

                                    167 Gunnell G F amp Simmons N B 2005 Fossil evidence

                                    and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                                    168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                                    Wyoming and the evolution of flight and echolocationNature 451 818ndash822

                                    169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

                                    paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                                    170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

                                    171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

                                    ian evolution Science 302 1934ndash1939 (doi101126science1090718)

                                    172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

                                    Phil Trans R Soc B (2011)

                                    dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                                    173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

                                    D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

                                    174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

                                    from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                                    175 Cifelli R L 1993 Theria of metatherianndasheutherian

                                    grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                                    176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                                    177 Wible J R 1990 Late Cretaceous marsupial petrosal

                                    bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                                    178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                                    pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                                    179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                                    of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                                    180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                                    2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                                    181 Beck R M Godthelp H Weisbecker V Archer M

                                    amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                                    182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                                    Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                                    183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                                    for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                                    184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                                    implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                                    185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                                    phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                                    186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                                    marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                                    187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                                    2502 M S Springer et al Mammalian historical biogeography

                                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                    mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                                    188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                                    189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                                    190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                                    Phil Trans R Soc B (2011)

                                    Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                                    191 Springer M S amp Krajewski C 2009 Monotremes

                                    (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                                    192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                                    53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                                    In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                                    194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                                    • The historical biogeography of Mammalia
                                      • Introduction
                                      • Phylogeny reconstruction
                                      • Molecular dating analyses
                                      • Ancestral area reconstruction
                                      • Box 1
                                      • Ancestral area chronograms and palaeogeography
                                      • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                                      • Placental biogeography
                                      • The importance of dispersal
                                      • Bat biogeography
                                      • Marsupial biogeography
                                      • Monotreme biogeography
                                      • Conclusions
                                      • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
                                      • REFERENCES

                                      FuripteridaeNoctilionidaeMormoopidaePhyllostomidaeThyropteridaeMystacinidaeEmballonuridaeNycteridaeMyzopodidaeMolossidaeMiniopteridaeVespertilionidaeNatalidaeHipposideridaeRhinolophidaeRhinopomatidaeMegadermatidaePteropodidae

                                      1

                                      2

                                      3

                                      4

                                      56

                                      7

                                      8

                                      9

                                      10

                                      11

                                      1213

                                      14

                                      1516

                                      17

                                      EFEFEFEFEFGABCEFABAABCDEFABCDABCDEFGEFABCABCDABABCABC

                                      Figure 7 Eick et alrsquos [12] phylogeny and area coding forextant bat families Ancestral area reconstructions based onDIVA analyses are shown in table 6 for nodes 1ndash17Africa A Asia B Australia C Europe D North AmericaE South America F New Zealand G

                                      Mammalian historical biogeography M S Springer et al 2495

                                      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                      with contemporaneous climatic and habitat changes thatoccurred in the Amazon Basin Construction of anancestral area cladogram for all bat species will providean unprecedented opportunity to examine the impor-tance of transoceanic dispersal in promotingtaxonomic diversity in this highly successful group ofmammals

                                      10 MARSUPIAL BIOGEOGRAPHYThe oldest metatherian is Sinodelphys from China[171] Cretaceous marsupial fossils are also knownfrom Europe [172173] and North America [174ndash178] The consensus is that metatherians originatedin Asia and subsequently dispersed to North Americaand Europe [173]

                                      In contrast to the Cretaceous record of Metatheriaalmost all living metatherians have geographical distri-butions that are entirely Gondwanan Case et al[179] suggested that the ancestor of living marsupialsdispersed to South America in the Late Cretaceous orearly Palaeocene The South American marsupialcohort Ameridelphia which includes Paucituberculata(shrew opossums) and Didelphimorphia (opossums)is paraphyletic at the base of Australidelphia whichincludes the South American order Microbiotheria(monito del monte) and the Australasian orders Dipro-todontia (eg wombats kangaroos) Dasyuromorphia(eg quolls numbats) Peramelemorphia (eg bandi-coots bilbies) and Notoryctemorphia (marsupialmoles) [1721180ndash182]

                                      Subsequent to Kirsch et alrsquos [183] single-copyDNA hybridization study of marsupials whichplaced South American microbiotheres within Austra-lidelphia marsupial biogeographers have focused onthe monophyly or paraphyly of Australasian taxa Aus-tralasian monophyly is consistent with a singledispersal from South America to Australia via Antarcticabut Australasian paraphyly requires either multiple dis-persals to Australia or dispersal to Australia followedby back dispersal to South America [183ndash185] Molecu-lar phylogenies based on concatenated nuclear gene

                                      Phil Trans R Soc B (2011)

                                      sequences [21182] and retroposon insertions [186] sup-port the monophyly of Australasian marsupials andsuggest that Australasian marsupials last shared acommon ancestor with microbiotheres between 65 and58 Ma This phylogeny is compatible with a single dis-persal event from South America to Australia viaAntarctica [21] This dispersal would have been overlandif it occurred prior to the complete submergence of theSouth Tasman Rise approximately 64 Ma [187]

                                      In contrast Beck et al [181] analysed a datasetcomprising living and fossil taxa including the earlyEocene genus Djarthia from Australia and recovereda sister-group relationship between Djarthia andliving australidelphians Beck et alrsquos [181] topologysuggest that South American microbiotheres back-dis-persed from eastern Gondwana to South America eventhough living Australasian marsupials comprise amonophyletic taxon However the decay index thatassociates crown Australidelphia to the exclusion ofDjarthia is only one step This result highlights thepotential importance of fossils for inferring biogeo-graphic history and the precarious nature ofconclusions based on a fragmentary fossil record

                                      11 MONOTREME BIOGEOGRAPHYLiving monotremes include the semi-aquatic platypus(Ornithorhynchus) which occurs in Australia and Tas-mania and echidnas which occur in Australia(Tachyglossus) and New Guinea (Zaglossus) Theoldest monotreme is Teinolophos (121ndash1125 Ma) ofAustralia Rowe et al [188] suggested that Teinolophosis a crown monotreme based on cladistic analyses

                                      In contrast to this ancient fossil record relaxedclock estimates for the platypus-echidna divergencerange from 889 to 277 Ma [188ndash191] and are tooyoung to accommodate Teinolophos in crown-groupMonotremata Rather these dates suggest that Teinolo-phos lies on the monotreme stem branch Youngermonotreme fossils whether stem or crown are exclu-sively from the Southern Hemisphere Luo et al[192193] and Kielan-Jaworowska et al [194]suggested that Monotremata belongs to the moreinclusive Gondwanan clade Australosphenidaalthough other studies place these Mesozoic taxacloser to Theria than to Monotremata [188189]

                                      With or without these Mesozoic taxa it appears thatthe entire evolutionary history of Monotremata isrestricted to Gondwana Details of this history are diffi-cult to reconstruct owing to Monotrematarsquos depauperatetaxonomic diversity and meagre fossil record Futurefossil discoveries and more robust phylogenetic analysesare essential for revealing the full biogeographic range ofancient monotremes in Gondwana The occurrence ofmonotremes in Australia and South America suggeststhat their ancestral distribution may have includedother fragments of Gondwana such as Africa AntarcticaIndia and Madagascar

                                      12 CONCLUSIONSContemporary methods for deciphering palaeobiogeo-graphy are underpinned by phylogenies divergencetimes and ancestral area reconstructions which

                                      2496 M S Springer et al Mammalian historical biogeography

                                      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                      together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

                                      MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

                                      REFERENCES1 Jones K E amp Safi K 2011 Ecology and evolution of

                                      mammalian biodiversity Phil Trans R Soc B 366

                                      2451ndash2461 (doi101098rstb20110090)2 Simpson G G 1940 Mammals and land bridges

                                      J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

                                      Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

                                      4 Springer M S Meredith R W Eizirik E Teeling

                                      E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

                                      5 Bollback J P 2006 SIMMAP stochastic charactermapping of discrete traits on phylogenies BMC Bioin-form 7 88 (doi1011861471-2105-7-88)

                                      6 Drummond A J Ho S Y W Phillips M J amp Ram-baut A 2006 Relaxed phylogenetics and dating withconfidence PLoS Biol 4 e88 (doi101371journalpbio0040088)

                                      7 Zuckerkandl E amp Pauling L 1962 Molecular diseaseevolution and genetic heterogeneity In Horizons in bio-chemistry (eds M Kasha amp B Pullman) pp 189ndash225New York NY Academic Press

                                      8 Douady C J amp Douzery E J P 2003 Molecular esti-mation of eulipotyphlan divergence times and theevolution of lsquoInsectivorarsquo Mol Phylogenet Evol 28285ndash296 (doi101016S1055-7903(03)00119-2)

                                      9 Douady C J Catzeflis F Raman J Springer M S

                                      amp Stanhope M J 2003 Molecular evidence for theSahara as a vicariant agent and the role of Miocene cli-matic events in the diversification of the mammalianorder Macroscelidea (elephant shrews) Proc NatlAcad Sci USA 100 8325ndash8330 (doi101073pnas

                                      0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

                                      S J 2003 Placental mammal diversification and theCretaceousndashTertiary boundary Proc Natl Acad SciUSA 100 1056ndash1061 (doi101073pnas0334222

                                      100)11 Delsuc F Vizcaıno S F amp Douzery E J P 2004

                                      Influence of Tertiary paleoenvironmental changes onthe diversification of South American mammals a

                                      relaxed molecular clock study within xenarthransBMC Evol Biol 4 11 (doi1011861471-2148-4-11)

                                      Phil Trans R Soc B (2011)

                                      12 Eick G N Jacobs D S amp Matthee C A 2005 Anuclear DNA phylogenetic perspective on the evolutionof echolocation and historical biogeography of extant

                                      bats (Chiroptera) Mol Biol Evol 22 1869ndash1886(doi101093molbevmsi180)

                                      13 Teeling E C Springer M S Madsen O Bates POrsquoBrien S J amp Murphy W J 2005 A molecular phy-logeny for bats illuminates biogeography and the fossil

                                      record Science 307 580ndash584 (doi101126science1105113)

                                      14 Huchon D Chevret P Jordan U Kilpatrick C WRanwez V Jenkins P D Brosius J amp Schmitz J

                                      2007 Multiple molecular evidences for a living mamma-lian fossil Proc Natl Acad Sci USA 104 7495ndash7499(doi101073pnas0701289104)

                                      15 Janecka J E Miller W Pringle T H Wiens FZitzmann A Helgen K M Springer M S amp

                                      Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

                                      16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

                                      the root of the placental mammal tree Genome Res 17413ndash421 (doi101101gr5918807)

                                      17 Beck R M 2008 A dated phylogeny of marsupialsusing a molecular supermatrix and multiple fossil con-straints J Mammal 89 175ndash189 (doi10164406-

                                      MAMM-A-4371)18 Meredith R W Westerman M amp Springer M S

                                      2008 A timescale and phylogeny for lsquobandicootsrsquo (Pera-melemorphia Marsupialia) based on sequences for five

                                      nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

                                      19 Meredith R W Westerman M amp Springer M S2008 Phylogeny and timescale for the living genera ofkangaroos and kin (Macropodiformes Marsupialia)

                                      based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

                                      20 Meredith R W Westerman M amp Springer M S 2009A phylogeny of Diprotodontia (Marsupialia) based onsequences for five nuclear genes Mol Phylogenet Evol51 554ndash571 (doi101016jympev200902009)

                                      21 Meredith R W Krajewski C Westerman W ampSpringer M S 2009 Relationships and divergencetimes among the orders and families of marsupialsMus N Ariz Bull 65 383ndash406

                                      22 Chatterjee H J Ho S W Y Barnes I amp Groves C2009 Estimating the phylogeny and divergence times ofprimates using a supermatrix approach BMC EvolBiol 9 259 (doi1011861471-2148-9-259)

                                      23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

                                      (doi101016jympev201001033)24 Sanderson M J 1997 A nonparametric approach to

                                      estimating divergence times in the absence of rate con-stancy Mol Biol Evol 14 1218ndash1231

                                      25 Sanderson M J 2002 Estimating absolute rates of mol-

                                      ecular evolution and divergence times a penalizedlikelihood approach Mol Biol Evol 19 101ndash109

                                      26 Thorne J L amp Kishino H 2002 Divergence time andevolutionary rate estimation with multilocus data SystBiol 51 689ndash702 (doi10108010635150290102456)

                                      27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

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                                      28 Battistuzzi F U Filipski A Hedges S B amp KumarS 2010 Performance of relaxed-clock methods in esti-mating evolutionary divergence times and their

                                      credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

                                      29 Brown R P amp Yang Z 2010 Bayesian dating of shal-low phylogenies with a relaxed molecular clock SystBiol 59 119ndash131 (doi101093sysbiosyp082)

                                      30 Inoue J Donoghue P C J amp Yang Z 2010 Theimpact of the representation of fossil calibrations onBayesian estimation of species divergence times SystBiol 59 74ndash89 (doi101093sysbiosyp078)

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                                      34 Wen J Xiang Q-Y Qian H Li J Want X-W amp

                                      Ickert-Bond S M Intercontinental and intracontinen-tal biogeographymdashpatterns and methods J Syst Evol4 327ndash329

                                      35 Nylander J A A Olsson U Alstrom P amp Sanmar-tın I 2008 Accounting for phylogenetic uncertainty

                                      in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

                                      36 Ree R H Moore B R Webb C O amp Donoghue

                                      M J 2005 A likelihood framework for inferring theevolution of geographic range on phylogenetic treesEvolution 59 2299ndash2311

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                                      local extinction and cladogenesis Syst Biol 57 4ndash14 (doi10108010635150701883881)

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                                      version 3 analysis of phylogeny and character evolutionSunderland MA Sinauer Associates

                                      40 Clark J R Ree R H Alfaro M E King M G

                                      Wagner W L amp Roalson E H 2008 A comparativestudy in ancestral range reconstruction methodsretracing the uncertain histories of insular lineagesSyst Biol 57 693ndash707 (doi101080106351508

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                                      ology In Problems of phylogenetic reconstruction (eds K AJoysey amp A E Friday) pp 21ndash74 London UK Aca-demic Press

                                      42 Ree R H amp Sanmartın I 2009 Prospects and chal-lenges for parametric models in historicalbiogeographical inference J Biogeogr 36 1211ndash1220(doi101111j1365-2699200802068x)

                                      43 Lamm K S amp Redelings B D 2009 Reconstructing

                                      ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

                                      44 Maddison W P amp Maddison D R 2009 Mesquite amodular system for evolutionary analysis version 272See httpmesquiteprojectorg

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                                      Phil Trans R Soc B (2011)

                                      46 Lim B K 2008 Historical biogeography of New Worldemballonurid bats (Tribe Diclidurini) taxon pulsediversification J Biogeogr 35 1385ndash1401 (doi10

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                                      phy of bats in South America Chiroptera Neotropical15 391ndash410

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                                      grative historical biogeography J Int Comp Biol 43261ndash270 (doi101093icb432261)

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                                      Cretaceous terrestrial vertebrates from Madagascarimplications for Latin American biogeography AnnMo Bot Gard 93 178ndash208 (doi1034170026-6493(2006)93[178LCTVFM]20CO2)

                                      50 Sereno P C Wilson J A amp Conrad J L 2004 New

                                      dinosaurs link southern landmasses in the Mid-Cretac-eous Proc R Soc Lond B 271 1325ndash1330 (doi101098rspb20042692)

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                                      phylogenetics J Mamm Evol 1 1064ndash755453 Springer M S Cleven G C Madsen O de Jong

                                      W W Waddell V G Amrine H M amp Stanhope

                                      M J 1997 Endemic African mammals shake the phylo-genetic tree Nature 388 61ndash64 (doi10103840386)

                                      54 Springer M S Murphy W J Eizirik E amp OrsquoBrienS J 2005 Molecular evidence for major placental

                                      clades In The rise of placental mammals origins andrelationships of the major extant clades (eds K D Roseamp J D Archibald) pp 37ndash49 Baltimore MD JohnsHopkins University Press

                                      55 Stanhope M J Madsen O Waddell V G Cleven

                                      G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

                                      56 Stanhope M J Waddell V G Madsen O de Jong

                                      W W Hedges S B Cleven G C Kao D ampSpringer M S 1998 Molecular evidence for multipleorigins of Insectivora and for a new order of endemicAfrican insectivore mammals Proc Natl Acad SciUSA 95 9967ndash9972 (doi101073pnas95179967)

                                      57 Waddell P Okada N amp Hasegawa M 1999 Towardsresolving the interordinal relationships of placentalmammals Syst Biol 48 1ndash5 (doi101093sysbio4811)

                                      58 Waddell P J Kishino H amp Ota R 2001 A phyloge-netic foundation for comparative mammaliangenomics Genome Inform 12 141ndash154

                                      59 Eizirik E Murphy W J amp OrsquoBrien S J 2001 Mol-ecular dating and biogeography of the early placental

                                      mammal radiation J Hered 92 212ndash219 (doi101093jhered922212)

                                      60 Madsen O et al 2001 Parallel adaptive radiations intwo major clades of placental mammals Nature 409610ndash614 (doi10103835054544)

                                      61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

                                      62 Murphy W J et al 2001 Resolution of the early placen-

                                      tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

                                      63 Scally M Madsen O Douady C J de Jong W WStanhope M J amp Springer M S 2001 Molecular

                                      2498 M S Springer et al Mammalian historical biogeography

                                      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                      evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

                                      64 Springer M S amp de Jong W W 2001 Which mamma-lian supertree to bark up Science 291 1709ndash1711

                                      65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

                                      (doi101093bioinformaticsbtl446)66 Benton M J amp Donoghue P C J 2007 Paleontologi-

                                      cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

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                                      68 Muller J amp Reisz R R 2005 Four well-constrainedcalibration points from the vertebrate fossil record for

                                      molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

                                      69 Gradstein F M amp Ogg J G 2009 The geologic timescale In The timetree of life (eds S B Hedges amp SKumar) pp 26ndash34 Oxford UK Oxford University Press

                                      70 Gheerbrant E 2009 Paleocene emergence of elephantrelatives and the rapid radiation of African ungulatesProc Natl Acad Sci USA 106 10717ndash10721(doi101073pnas0900251106)

                                      71 Bergqvist L P Abrantes E A L amp Avilla L D S

                                      2004 The Xenarthra (Mammalia) of Sao Jose de Ita-boraı Basin (upper Paleocene Itaboraian) Rio deJaneiro Brazil Geodiversitas 26 323ndash337

                                      72 Carlini A A Pascual R Reguero M A Scillato-

                                      Yane G J Tonni E P amp Vizcaıno S F 1990 Thefirst Paleogene land placental mammal from Antarcticaits paleoclimatic and paleobiogeographical bearings InAbstracts IV International Congress of Systematic and Evol-utionary Biology (eds B Cox amp J Reveal) 325 p

                                      Baltimore MD University of Maryland73 Vizcaıno S F amp Scillato-Yane G J 1995 An Eocene

                                      Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

                                      74 Benton M J Donoghue P C J amp Asher R J 2009

                                      Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

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                                      In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

                                      76 Hunt Jr R M amp Tedford R H 1993 Phylogenetic

                                      relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

                                      77 Wesley-Hunt G D amp Flynn J J 2005 Phylogeny ofthe Carnivora basal relationships among the carnivora-morphans and assessment of the position oflsquoMiacoidearsquo relative to Carnivora J Syst Palaeontol 31ndash28 (doi101017S1477201904001518)

                                      78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

                                      79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

                                      Phil Trans R Soc B (2011)

                                      80 Storch G amp Seiffert C 2007 Extraordinarily preservedspecimen of the oldest known glirid from the middleEocene of Messel (Rodentia) J Vertebr Paleontol 27

                                      189ndash194 (doi1016710272-4634(2007)27[189EPSOTO]20CO2)

                                      81 Sallam H M Seiffert E R Steiper M E amp SimonsE L 2009 Fossil and molecular evidence constrainscenarios for the early evolutionary and biogeographic

                                      history of hystricognathous rodents Proc Natl AcadSci USA 106 16 722ndash16 727 (doi101073pnas0908702106)

                                      82 Hartenberger L 1998 Description of the radiation of

                                      the Rodentia (Mammalia) from the Late Paleocene tothe Miocene phylogenetic consequences C R AcadSci II A 326 439ndash444

                                      83 Vucetich M G Verzi D H amp Hartenberger L 1999Review and analysis of the radiation of the South

                                      American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

                                      84 Flynn L J amp Jacobs L L 2008 Castoridea In Evolution oftertiary mammals of North America small mammals xenar-thrans and marine mammals (eds C M Janis G F

                                      Gunnell amp M D Uhen) vol 2 pp 391ndash405 CambridgeUK Cambridge University Press

                                      85 Marenssi S A Reguero M A Santillana S N ampVizcaıno S F 1994 Eocene land mammals from Sey-mour Island Antarctica paleobiogeographical

                                      implications Antarctic Sci 6 3ndash15 (doi101017S0954102094000027)

                                      86 MacPhee R D E amp Reguero M A 2010 Reinterpre-tation of a middle Eocene record of Tardigrada (Pilosa

                                      Xenarthra Mammalia) from La Meseta FormationSeymour Island West Antarctica Am Mus Novit3689 1ndash21 (doi1012067031)

                                      87 McKenna M C amp Bell S K 1997 Classification ofmammals above the species level New York NY Colum-

                                      bia University Press88 Gaudin T J amp Branham D G 1998 The phylogeny of

                                      the Myrmecophagidae (Mammalia Xenarthra Vermi-lingua) and relationship of Eurotamandua to theVermilingua J Mamm Evol 5 237ndash265 (doi10

                                      1023A1020512529767)89 Galliari F C Carlini A A amp Sanchez-Villagra M R

                                      2010 Evolution of the axial skeleton in armadillos(Mammalia Dasypodidae) Mamm Biol 75 326ndash333 (doi101016jmambio200903014)

                                      90 Poljak S Confalonieri V Fasanella M Gabrielli Mamp Lizarralde M S 2010 Phylogeography of the arma-dillo Chaetophractus villosus (Dasypodidae Xenarthra)post-glacial range expansion from Pampas to Patagonia

                                      (Argentina) Mol Phylogenet Evol 55 38ndash46 (doi101016jympev200912021)

                                      91 Sige B Crochet J-Y amp Insole A 1977 Les plusvielles taupes Geobios Mem Spec 1 141ndash157(doi101016S0016-6995(77)80014-4)

                                      92 Gunnell G F Bown T M Hutchinson J H ampBloch J I 2008 Lipotyphla In Evolution of Tertiarymammals of North America small mammals xenarthransand marine mammals vol 2 (eds C M Janis G FGunnell amp M D Uhen) pp 89ndash125 Cambridge

                                      UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

                                      amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

                                      94 Tabuce R Asher R J amp Lehmann T 2008 Afrother-ian mammals a review of current data Mammalia 722ndash14 (doi101515MAMM2008004)

                                      Mammalian historical biogeography M S Springer et al 2499

                                      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                      95 Butler P M 1995 Fossil Macroscelidea Mammal Rev25 3ndash14 (doi101111j1365-29071995tb00432x)

                                      96 Milledge S 2003 Fossil aardvarks from the Lothagam

                                      beds In Lothagam the dawn of humanity in EasternAfrica (eds J Leakey amp J Harris) pp 363ndash368New York NY Columbia University Press

                                      97 Flynn L J amp Jacobs L L 2008 Aplodontia In Evol-ution of tertiary mammals of North America smallmammals xenarthrans and marine mammals vol 2(eds C M Janis G F Gunnell amp M D Uhen) pp377ndash390 Cambridge UK Cambridge UniversityPress

                                      98 Marivaux L Ducrocq S Jaeger J-J Marandat BSudre J Chaimanee Y Tun S T Htoon W ampSoe A N 2005 New remains of Pondaungimysanomaluropsis (Rodentia Anomaluroidea) from thelatest middle Eocene Pondaung Formation of

                                      Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

                                      99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

                                      100 Antoine P-O et al 2007 The middle Miocene (Laven-

                                      tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

                                      Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

                                      Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

                                      (doi1016710272-4634(2007)27[683OADOTO]20CO2)

                                      102 Frailey C D amp Campbell K E 2004 The rodents ofthe Santa Rosa Local Fauna In The Paleogene mamma-lian fauna of Santa Rosa Amazonian Peru (ed K E

                                      Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

                                      103 Martin T 2004 Evolution of incisor enamel micro-structure in Lagomorpha J Vertebr Paleontol 24

                                      411ndash426 (doi1016712513)104 Lopez-Martinez N 2008 The lagomorph fossil

                                      record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

                                      105 Marivaux L Bocat L Chaimanee Y Jaeger J-JMarandat B Srisuk P Tafforeau P Yamee C ampWelcomme L 2006 Cynocephalid dermopterans

                                      from the Palaeogene of South Asia (Thailand Myan-mar and Pakistan) systematic evolutionary andpalaeobiogeographic implications Zool Scripta 35395ndash420 (doi101111j1463-6409200600235x)

                                      106 Tong Y 1988 Fossil tree shrews from the Eocene

                                      Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

                                      107 Godfrey L R amp Jungers W L 2002 Quaternary fossillemurs In The primate fossil record (ed W C Hartwig)pp 97ndash121 Cambridge UK Cambridge University

                                      Press108 Bajpai S Kay R F Williams B A Das D P

                                      Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

                                      Phil Trans R Soc B (2011)

                                      109 Beard K C Qi T Dawson M R Wang B amp Li C1994 A diverse new primate fauna from middle Eocenefissure-fillings in southeastern China Nature 368

                                      604ndash609 (doi101038368604a0)110 Orliac M Boisserie J-R MacLatchy L amp Lihoreau

                                      F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

                                      111 Honey J G Harrison J A Prothero D R ampStevens M S 1998 Camelidae In Evolution of Tertiarymammals of North America terrestrial carnivoresungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp439ndash462 Cambridge UK Cambridge University Press

                                      112 Metais G amp Vislobokova I 2008 Basal ruminants In

                                      The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

                                      113 Harris J M amp Li-Ping L 2008 Superfamily SuoideaIn The evolution of artiodactyls (eds D R Prothero amp S

                                      E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

                                      114 Bowen G J Clyde W C Koch P L Ting SAlroy J Tsubamoto T Wang Y amp Wang Y 2002Mammalian dispersal at the PaleoceneEocene bound-

                                      ary Science 295 2062ndash2065 (doi101126science1068700)

                                      115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

                                      earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

                                      116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

                                      117 Colbert M W amp Schoch R M 1998 Tapiroidea and

                                      other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

                                      118 Dashzeveg D 1996 Some carnivorous mammals fromthe Paleogene of the Eastern Gobi Desert Mongoliaand the application of Oligocene carnivores to strati-graphic correlation Am Mus Novit 3179 1ndash14

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                                      120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

                                      cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

                                      121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

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                                      123 Ronquist F amp Huelsenbeck J P 2003 MrBayes 3Bayesian phylogenetic inference under mixed modelsBioinformatics 19 1572ndash1574 (doi101093bioinfor-maticsbtg180)

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                                      Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

                                      126 Zack S P Penkrot T A Bloch J I amp Rose K D

                                      2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

                                      127 Tabuce R Marivaux L Adaci M Bensalah M

                                      Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

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                                      America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

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                                      132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

                                      133 Cifelli R L amp Davis B M 2003 Marsupial origins

                                      Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

                                      2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

                                      135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

                                      eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

                                      136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

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                                      W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

                                      260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

                                      N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

                                      139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

                                      Phil Trans R Soc B (2011)

                                      140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

                                      141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

                                      0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

                                      roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

                                      of mammals Proc Natl Acad Sci USA 106 5235ndash5240

                                      143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

                                      144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

                                      145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

                                      146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

                                      73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

                                      dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

                                      148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

                                      108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

                                      dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                                      37091305110239)150 McCall R 1997 Implications of recent geological

                                      investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

                                      151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

                                      152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

                                      153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

                                      154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

                                      155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

                                      caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

                                      156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

                                      Mammalian historical biogeography M S Springer et al 2501

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                                      revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

                                      157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

                                      158 Rowe D L Dunn K A Adkins R M amp Honeycutt

                                      R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

                                      159 Beard K C Wang B Dawson M Huang X amp

                                      Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

                                      160 Beard K C amp Wang J 2004 The eosimiid primates

                                      (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

                                      161 Arnason U Gullberg A Schweizer B A amp Janke A

                                      2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

                                      162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

                                      163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

                                      164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

                                      513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

                                      ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

                                      AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

                                      diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

                                      167 Gunnell G F amp Simmons N B 2005 Fossil evidence

                                      and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                                      168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                                      Wyoming and the evolution of flight and echolocationNature 451 818ndash822

                                      169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

                                      paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                                      170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

                                      171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

                                      ian evolution Science 302 1934ndash1939 (doi101126science1090718)

                                      172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

                                      Phil Trans R Soc B (2011)

                                      dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                                      173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

                                      D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

                                      174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

                                      from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                                      175 Cifelli R L 1993 Theria of metatherianndasheutherian

                                      grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                                      176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                                      177 Wible J R 1990 Late Cretaceous marsupial petrosal

                                      bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                                      178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                                      pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                                      179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                                      of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                                      180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                                      2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                                      181 Beck R M Godthelp H Weisbecker V Archer M

                                      amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                                      182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                                      Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                                      183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                                      for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                                      184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                                      implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                                      185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                                      phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                                      186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                                      marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                                      187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                                      2502 M S Springer et al Mammalian historical biogeography

                                      on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                      mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                                      188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                                      189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                                      190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                                      Phil Trans R Soc B (2011)

                                      Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                                      191 Springer M S amp Krajewski C 2009 Monotremes

                                      (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                                      192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                                      53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                                      In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                                      194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                                      • The historical biogeography of Mammalia
                                        • Introduction
                                        • Phylogeny reconstruction
                                        • Molecular dating analyses
                                        • Ancestral area reconstruction
                                        • Box 1
                                        • Ancestral area chronograms and palaeogeography
                                        • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                                        • Placental biogeography
                                        • The importance of dispersal
                                        • Bat biogeography
                                        • Marsupial biogeography
                                        • Monotreme biogeography
                                        • Conclusions
                                        • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
                                        • REFERENCES

                                        2496 M S Springer et al Mammalian historical biogeography

                                        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                        together yield ancestral area chronograms that providea powerful framework for proposing and testinghypotheses of dispersal and vicariance when evaluatedin the context of palaeographic hypotheses The toolkitfor unravelling historical patterns of vicariance anddispersal that have moulded the evolutionary historyof Mammalia now includes molecular data fossilsreconstructions of palaeogeography and palaeo-oceancurrents and a burgeoning array of methods in phylo-geny reconstruction molecular dating and ancestralarea reconstruction Larger and taxonomically morecomplete molecular datasets new fossil discoveriesand the application of new techniques will lead to sig-nificant advances in our understanding of thehistorical biogeography of Mammalia

                                        MSS and WJM acknowledge support from NSF Threeanonymous reviewers provided helpful comments on anearlier draft of this manuscript We thank Kate Jones forinviting us to contribute to this volume

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                                        J Washington DC Acad Sci 30 137ndash1633 Springer M S Burk-Herrick A Meredith R

                                        Eizirik E Teeling E OrsquoBrien S J amp Murphy W J2007 The adequacy of morphology for reconstructingthe early history of placental mammals Syst Biol 56673ndash684 (doi10108010635150701491149)

                                        4 Springer M S Meredith R W Eizirik E Teeling

                                        E amp Murphy W J 2008 Morphology and placentalmammal phylogeny Syst Biol 57 499ndash503 (doi10108010635150802164504)

                                        5 Bollback J P 2006 SIMMAP stochastic charactermapping of discrete traits on phylogenies BMC Bioin-form 7 88 (doi1011861471-2105-7-88)

                                        6 Drummond A J Ho S Y W Phillips M J amp Ram-baut A 2006 Relaxed phylogenetics and dating withconfidence PLoS Biol 4 e88 (doi101371journalpbio0040088)

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                                        9 Douady C J Catzeflis F Raman J Springer M S

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                                        0832467100)10 Springer M S Murphy W J Eizirik E amp OrsquoBrien

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                                        relaxed molecular clock study within xenarthransBMC Evol Biol 4 11 (doi1011861471-2148-4-11)

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                                        12 Eick G N Jacobs D S amp Matthee C A 2005 Anuclear DNA phylogenetic perspective on the evolutionof echolocation and historical biogeography of extant

                                        bats (Chiroptera) Mol Biol Evol 22 1869ndash1886(doi101093molbevmsi180)

                                        13 Teeling E C Springer M S Madsen O Bates POrsquoBrien S J amp Murphy W J 2005 A molecular phy-logeny for bats illuminates biogeography and the fossil

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                                        Murphy W J 2007 Molecular and genomic data ident-ify the closest living relative of Primates Science 318792ndash974 (doi101126science1147555)

                                        16 Murphy W J Pringle T H Crider T A SpringerM S amp Miller W 2007 Using genomic data to unravel

                                        the root of the placental mammal tree Genome Res 17413ndash421 (doi101101gr5918807)

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                                        nuclear genes Mol Phylogenet Evol 47 1ndash20 (doi101016jympev200801002)

                                        19 Meredith R W Westerman M amp Springer M S2008 Phylogeny and timescale for the living genera ofkangaroos and kin (Macropodiformes Marsupialia)

                                        based on nuclear sequences Aust J Zool 56 395ndash410 (doi101071ZO08044)

                                        20 Meredith R W Westerman M amp Springer M S 2009A phylogeny of Diprotodontia (Marsupialia) based onsequences for five nuclear genes Mol Phylogenet Evol51 554ndash571 (doi101016jympev200902009)

                                        21 Meredith R W Krajewski C Westerman W ampSpringer M S 2009 Relationships and divergencetimes among the orders and families of marsupialsMus N Ariz Bull 65 383ndash406

                                        22 Chatterjee H J Ho S W Y Barnes I amp Groves C2009 Estimating the phylogeny and divergence times ofprimates using a supermatrix approach BMC EvolBiol 9 259 (doi1011861471-2148-9-259)

                                        23 Eizirik E Murphy W J Koepfli K P JohnsonW E Dragoo J W Wayne R K amp OrsquoBrien S J2010 Pattern and timing of diversification of the mam-malian order Carnivora inferred from multiple nucleargene sequences Mol Phylogenet Evol 56 49ndash63

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                                        estimating divergence times in the absence of rate con-stancy Mol Biol Evol 14 1218ndash1231

                                        25 Sanderson M J 2002 Estimating absolute rates of mol-

                                        ecular evolution and divergence times a penalizedlikelihood approach Mol Biol Evol 19 101ndash109

                                        26 Thorne J L amp Kishino H 2002 Divergence time andevolutionary rate estimation with multilocus data SystBiol 51 689ndash702 (doi10108010635150290102456)

                                        27 Yang Z amp Rannala B 2006 Bayesian estimation ofspecies divergence times under a molecular clockusing multiple fossil calibrations with soft boundsMol Biol Evol 23 212ndash226 (doi101093molbevmsj024)

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                                        28 Battistuzzi F U Filipski A Hedges S B amp KumarS 2010 Performance of relaxed-clock methods in esti-mating evolutionary divergence times and their

                                        credibility intervals Mol Biol Evol 27 1289ndash1300(doi101093molbevmsq014)

                                        29 Brown R P amp Yang Z 2010 Bayesian dating of shal-low phylogenies with a relaxed molecular clock SystBiol 59 119ndash131 (doi101093sysbiosyp082)

                                        30 Inoue J Donoghue P C J amp Yang Z 2010 Theimpact of the representation of fossil calibrations onBayesian estimation of species divergence times SystBiol 59 74ndash89 (doi101093sysbiosyp078)

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                                        34 Wen J Xiang Q-Y Qian H Li J Want X-W amp

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                                        35 Nylander J A A Olsson U Alstrom P amp Sanmar-tın I 2008 Accounting for phylogenetic uncertainty

                                        in biogeography a Bayesian approach to dispersalndashvicariance analysis of the thrushes (Aves Turdus) SystBiol 57 257ndash268 (doi10108010635150802044003)

                                        36 Ree R H Moore B R Webb C O amp Donoghue

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                                        local extinction and cladogenesis Syst Biol 57 4ndash14 (doi10108010635150701883881)

                                        38 Hardy C R amp Linder H P 2005 Intraspecific varia-bility and timing in ancestral ecology reconstruction atest case from the Cape flora Syst Biol 54 299ndash316

                                        (doi10108010635150590923317)39 Maddison W P amp Maddison D R 1992 MacClade

                                        version 3 analysis of phylogeny and character evolutionSunderland MA Sinauer Associates

                                        40 Clark J R Ree R H Alfaro M E King M G

                                        Wagner W L amp Roalson E H 2008 A comparativestudy in ancestral range reconstruction methodsretracing the uncertain histories of insular lineagesSyst Biol 57 693ndash707 (doi101080106351508

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                                        42 Ree R H amp Sanmartın I 2009 Prospects and chal-lenges for parametric models in historicalbiogeographical inference J Biogeogr 36 1211ndash1220(doi101111j1365-2699200802068x)

                                        43 Lamm K S amp Redelings B D 2009 Reconstructing

                                        ancestral ranges in historical biogeography propertiesand prospects J Syst Evol 47 369ndash382 (doi101111j1759-6831200900042x)

                                        44 Maddison W P amp Maddison D R 2009 Mesquite amodular system for evolutionary analysis version 272See httpmesquiteprojectorg

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                                        Phil Trans R Soc B (2011)

                                        46 Lim B K 2008 Historical biogeography of New Worldemballonurid bats (Tribe Diclidurini) taxon pulsediversification J Biogeogr 35 1385ndash1401 (doi10

                                        1111j1365-2699200801888x)47 Lim B K 2009 Review of the origins and biogeogra-

                                        phy of bats in South America Chiroptera Neotropical15 391ndash410

                                        48 Donoghue M J amp Moore B R 2003 Toward an inte-

                                        grative historical biogeography J Int Comp Biol 43261ndash270 (doi101093icb432261)

                                        49 Krause D W OrsquoConnor P M Rogers K C Samp-son S D Buckley G A amp Rogers R R 2006 Late

                                        Cretaceous terrestrial vertebrates from Madagascarimplications for Latin American biogeography AnnMo Bot Gard 93 178ndash208 (doi1034170026-6493(2006)93[178LCTVFM]20CO2)

                                        50 Sereno P C Wilson J A amp Conrad J L 2004 New

                                        dinosaurs link southern landmasses in the Mid-Cretac-eous Proc R Soc Lond B 271 1325ndash1330 (doi101098rspb20042692)

                                        51 Novacek M J 1992 Mammalian phylogeny shakingthe tree Nature 356 121ndash125 (doi101038

                                        356121a0)52 Novacek M J 1993 Reflections on higher mammalian

                                        phylogenetics J Mamm Evol 1 1064ndash755453 Springer M S Cleven G C Madsen O de Jong

                                        W W Waddell V G Amrine H M amp Stanhope

                                        M J 1997 Endemic African mammals shake the phylo-genetic tree Nature 388 61ndash64 (doi10103840386)

                                        54 Springer M S Murphy W J Eizirik E amp OrsquoBrienS J 2005 Molecular evidence for major placental

                                        clades In The rise of placental mammals origins andrelationships of the major extant clades (eds K D Roseamp J D Archibald) pp 37ndash49 Baltimore MD JohnsHopkins University Press

                                        55 Stanhope M J Madsen O Waddell V G Cleven

                                        G C de Jong W W amp Springer M S 1998 Highlycongruent molecular support for a diverse superordinalclade of endemic African mammals Mol PhylogenetEvol 9 501ndash508 (doi101006mpev19980517)

                                        56 Stanhope M J Waddell V G Madsen O de Jong

                                        W W Hedges S B Cleven G C Kao D ampSpringer M S 1998 Molecular evidence for multipleorigins of Insectivora and for a new order of endemicAfrican insectivore mammals Proc Natl Acad SciUSA 95 9967ndash9972 (doi101073pnas95179967)

                                        57 Waddell P Okada N amp Hasegawa M 1999 Towardsresolving the interordinal relationships of placentalmammals Syst Biol 48 1ndash5 (doi101093sysbio4811)

                                        58 Waddell P J Kishino H amp Ota R 2001 A phyloge-netic foundation for comparative mammaliangenomics Genome Inform 12 141ndash154

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                                        mammal radiation J Hered 92 212ndash219 (doi101093jhered922212)

                                        60 Madsen O et al 2001 Parallel adaptive radiations intwo major clades of placental mammals Nature 409610ndash614 (doi10103835054544)

                                        61 Murphy W J Eizirik E Johnson W E Zhang Y PRyder O A amp OrsquoBrien S J 2001 Molecular phyloge-netics and the origins of placental mammals Nature409 614ndash618 (doi10103835054550)

                                        62 Murphy W J et al 2001 Resolution of the early placen-

                                        tal mammal radiation using Bayesian phylogeneticsScience 294 2348ndash2351 (doi101126science1067179)

                                        63 Scally M Madsen O Douady C J de Jong W WStanhope M J amp Springer M S 2001 Molecular

                                        2498 M S Springer et al Mammalian historical biogeography

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                                        evidence for the major clades of placental mammalsJ Mamm Evol 8 239ndash277 (doi101023A1014446915393)

                                        64 Springer M S amp de Jong W W 2001 Which mamma-lian supertree to bark up Science 291 1709ndash1711

                                        65 Stamatakis A 2006 RAxML-VI-HPC maximum like-lihood-based phylogenetic analysis with thousands oftaxa and mixed models Bioinformatics 22 2688ndash2690

                                        (doi101093bioinformaticsbtl446)66 Benton M J amp Donoghue P C J 2007 Paleontologi-

                                        cal evidence to date the tree of life Mol Biol Evol 2426ndash53 (doi101093molbevmsl150)

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                                        68 Muller J amp Reisz R R 2005 Four well-constrainedcalibration points from the vertebrate fossil record for

                                        molecular clock estimates BioEssays 27 1069ndash1075(doi101002bies20286)

                                        69 Gradstein F M amp Ogg J G 2009 The geologic timescale In The timetree of life (eds S B Hedges amp SKumar) pp 26ndash34 Oxford UK Oxford University Press

                                        70 Gheerbrant E 2009 Paleocene emergence of elephantrelatives and the rapid radiation of African ungulatesProc Natl Acad Sci USA 106 10717ndash10721(doi101073pnas0900251106)

                                        71 Bergqvist L P Abrantes E A L amp Avilla L D S

                                        2004 The Xenarthra (Mammalia) of Sao Jose de Ita-boraı Basin (upper Paleocene Itaboraian) Rio deJaneiro Brazil Geodiversitas 26 323ndash337

                                        72 Carlini A A Pascual R Reguero M A Scillato-

                                        Yane G J Tonni E P amp Vizcaıno S F 1990 Thefirst Paleogene land placental mammal from Antarcticaits paleoclimatic and paleobiogeographical bearings InAbstracts IV International Congress of Systematic and Evol-utionary Biology (eds B Cox amp J Reveal) 325 p

                                        Baltimore MD University of Maryland73 Vizcaıno S F amp Scillato-Yane G J 1995 An Eocene

                                        Tardigrada (Mammalia Xenarthra) from SeymourIsland Antarctica Antarctic Sci 7 407ndash408

                                        74 Benton M J Donoghue P C J amp Asher R J 2009

                                        Calibrating and constraining molecular clocks In Thetimetree of life (eds S B Hedges amp S Kumar) pp35ndash86 Oxford UK Oxford University Press

                                        75 Flynn J J 1996 Carnivoran phylogeny and rates ofevolution morphological taxonomic and molecular

                                        In Carnivore behavior ecology and evolution vol 2 (edJ L Gittleman) pp 542ndash581 Ithaca NY CornellUniversity Press

                                        76 Hunt Jr R M amp Tedford R H 1993 Phylogenetic

                                        relationships within the aeluroid Carnivora and impli-cations of their temporal and geographic distribution InMammal phylogeny placentals vol 2 (eds F S SzalayM J Novacek amp M C McKenna) pp 53ndash74 BerlinGermany Springer

                                        77 Wesley-Hunt G D amp Flynn J J 2005 Phylogeny ofthe Carnivora basal relationships among the carnivora-morphans and assessment of the position oflsquoMiacoidearsquo relative to Carnivora J Syst Palaeontol 31ndash28 (doi101017S1477201904001518)

                                        78 Woodburne M O Gunnell G F amp Stucky R K2009 Climate directly influences Eocene mammalfaunal dynamics in North America Proc Natl AcadSci USA 106 13 399ndash13 403 (doi101073pnas0906802106)

                                        79 Rose K D DeLeon V B Missiaen P Rana R SSahni A Singh L amp Smith T 2008 Early Eocenelagomorph (Mammalia) from Western India and theearly diversification of Lagomorpha Proc R Soc B275 1203ndash1208 (doi101098rspb20071661)

                                        Phil Trans R Soc B (2011)

                                        80 Storch G amp Seiffert C 2007 Extraordinarily preservedspecimen of the oldest known glirid from the middleEocene of Messel (Rodentia) J Vertebr Paleontol 27

                                        189ndash194 (doi1016710272-4634(2007)27[189EPSOTO]20CO2)

                                        81 Sallam H M Seiffert E R Steiper M E amp SimonsE L 2009 Fossil and molecular evidence constrainscenarios for the early evolutionary and biogeographic

                                        history of hystricognathous rodents Proc Natl AcadSci USA 106 16 722ndash16 727 (doi101073pnas0908702106)

                                        82 Hartenberger L 1998 Description of the radiation of

                                        the Rodentia (Mammalia) from the Late Paleocene tothe Miocene phylogenetic consequences C R AcadSci II A 326 439ndash444

                                        83 Vucetich M G Verzi D H amp Hartenberger L 1999Review and analysis of the radiation of the South

                                        American Hystricognathi (Mammalia Rodentia)C R Acad Sci II A 329 763ndash769

                                        84 Flynn L J amp Jacobs L L 2008 Castoridea In Evolution oftertiary mammals of North America small mammals xenar-thrans and marine mammals (eds C M Janis G F

                                        Gunnell amp M D Uhen) vol 2 pp 391ndash405 CambridgeUK Cambridge University Press

                                        85 Marenssi S A Reguero M A Santillana S N ampVizcaıno S F 1994 Eocene land mammals from Sey-mour Island Antarctica paleobiogeographical

                                        implications Antarctic Sci 6 3ndash15 (doi101017S0954102094000027)

                                        86 MacPhee R D E amp Reguero M A 2010 Reinterpre-tation of a middle Eocene record of Tardigrada (Pilosa

                                        Xenarthra Mammalia) from La Meseta FormationSeymour Island West Antarctica Am Mus Novit3689 1ndash21 (doi1012067031)

                                        87 McKenna M C amp Bell S K 1997 Classification ofmammals above the species level New York NY Colum-

                                        bia University Press88 Gaudin T J amp Branham D G 1998 The phylogeny of

                                        the Myrmecophagidae (Mammalia Xenarthra Vermi-lingua) and relationship of Eurotamandua to theVermilingua J Mamm Evol 5 237ndash265 (doi10

                                        1023A1020512529767)89 Galliari F C Carlini A A amp Sanchez-Villagra M R

                                        2010 Evolution of the axial skeleton in armadillos(Mammalia Dasypodidae) Mamm Biol 75 326ndash333 (doi101016jmambio200903014)

                                        90 Poljak S Confalonieri V Fasanella M Gabrielli Mamp Lizarralde M S 2010 Phylogeography of the arma-dillo Chaetophractus villosus (Dasypodidae Xenarthra)post-glacial range expansion from Pampas to Patagonia

                                        (Argentina) Mol Phylogenet Evol 55 38ndash46 (doi101016jympev200912021)

                                        91 Sige B Crochet J-Y amp Insole A 1977 Les plusvielles taupes Geobios Mem Spec 1 141ndash157(doi101016S0016-6995(77)80014-4)

                                        92 Gunnell G F Bown T M Hutchinson J H ampBloch J I 2008 Lipotyphla In Evolution of Tertiarymammals of North America small mammals xenarthransand marine mammals vol 2 (eds C M Janis G FGunnell amp M D Uhen) pp 89ndash125 Cambridge

                                        UK Cambridge University Press93 Seiffert E R Simons E L Ryan T M Bown T M

                                        amp Attia Y 2007 New remains of Eocene and OligoceneAfrosoricida (Afrotheria) from Egypt with implicationsfor the origin(s) of afrosoricid zalambdodonty J VertebrPaleontol 27 963ndash972 (doi1016710272-4634(2007)27[963NROEAO]20CO2)

                                        94 Tabuce R Asher R J amp Lehmann T 2008 Afrother-ian mammals a review of current data Mammalia 722ndash14 (doi101515MAMM2008004)

                                        Mammalian historical biogeography M S Springer et al 2499

                                        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                        95 Butler P M 1995 Fossil Macroscelidea Mammal Rev25 3ndash14 (doi101111j1365-29071995tb00432x)

                                        96 Milledge S 2003 Fossil aardvarks from the Lothagam

                                        beds In Lothagam the dawn of humanity in EasternAfrica (eds J Leakey amp J Harris) pp 363ndash368New York NY Columbia University Press

                                        97 Flynn L J amp Jacobs L L 2008 Aplodontia In Evol-ution of tertiary mammals of North America smallmammals xenarthrans and marine mammals vol 2(eds C M Janis G F Gunnell amp M D Uhen) pp377ndash390 Cambridge UK Cambridge UniversityPress

                                        98 Marivaux L Ducrocq S Jaeger J-J Marandat BSudre J Chaimanee Y Tun S T Htoon W ampSoe A N 2005 New remains of Pondaungimysanomaluropsis (Rodentia Anomaluroidea) from thelatest middle Eocene Pondaung Formation of

                                        Central Myanmar J Vertebr Paleontol 25 214ndash227(doi1016710272-4634(2005)025[0214NROPAR]20CO2)

                                        99 Flynn L J Lindsay E H amp Martin R A 2008Geomorpha In Evolution of Tertiary mammals of NorthAmerica small mammals xenarthrans and marine mam-mals vol 2 (eds C M Janis G F Gunnell amp M DUhen) pp 428ndash455 Cambridge UK CambridgeUniversity Press

                                        100 Antoine P-O et al 2007 The middle Miocene (Laven-

                                        tan) Fitzgcarrald Fauna Amazonian Peru In Proc 4thEur Meeting on the Palaeontology and Stratigraphy ofLatin America (eds E Dıaz-Martınez amp I Rabano)pp 19ndash24 Madrid Spain Instituto Geologico y

                                        Minero de Espana101 Deschamps C M Olivares A I Vieytes E C amp

                                        Vucetich M G 2007 Ontogeny and diversity of theoldest capybaras (Rodentia Hydrochoeridae late Mio-cene of Argentina) J Vertebr Paleontol 27 683ndash692

                                        (doi1016710272-4634(2007)27[683OADOTO]20CO2)

                                        102 Frailey C D amp Campbell K E 2004 The rodents ofthe Santa Rosa Local Fauna In The Paleogene mamma-lian fauna of Santa Rosa Amazonian Peru (ed K E

                                        Campbell Jr) pp 1ndash130 Los Angeles CA NaturalHistory Museum of Los Angeles County ScienceSeries 40

                                        103 Martin T 2004 Evolution of incisor enamel micro-structure in Lagomorpha J Vertebr Paleontol 24

                                        411ndash426 (doi1016712513)104 Lopez-Martinez N 2008 The lagomorph fossil

                                        record and the origin of the European rabbit InLagomorph biology evolution ecology and conservation(eds P C Alves N Ferrand amp K Hacklander)pp 26ndash47 Amsterdam The Netherlands Springer

                                        105 Marivaux L Bocat L Chaimanee Y Jaeger J-JMarandat B Srisuk P Tafforeau P Yamee C ampWelcomme L 2006 Cynocephalid dermopterans

                                        from the Palaeogene of South Asia (Thailand Myan-mar and Pakistan) systematic evolutionary andpalaeobiogeographic implications Zool Scripta 35395ndash420 (doi101111j1463-6409200600235x)

                                        106 Tong Y 1988 Fossil tree shrews from the Eocene

                                        Hetaoyuan Formation of Xichuan Henan VertebrataPalasiatica 26 214ndash220

                                        107 Godfrey L R amp Jungers W L 2002 Quaternary fossillemurs In The primate fossil record (ed W C Hartwig)pp 97ndash121 Cambridge UK Cambridge University

                                        Press108 Bajpai S Kay R F Williams B A Das D P

                                        Kapur V V amp Tiwari B N 2008 The oldest Asianrecord of Anthropoidea Proc Natl Acad Sci USA105 11 093ndash11 098 (doi101073pnas0804159105)

                                        Phil Trans R Soc B (2011)

                                        109 Beard K C Qi T Dawson M R Wang B amp Li C1994 A diverse new primate fauna from middle Eocenefissure-fillings in southeastern China Nature 368

                                        604ndash609 (doi101038368604a0)110 Orliac M Boisserie J-R MacLatchy L amp Lihoreau

                                        F 2010 Early Miocene hippopotamids (Cetartiodac-tyla) constrain the phylogenetic and spatiotemporalsettings of hippopotamid origin Proc Natl Acad SciUSA 107 11 871ndash11 876 (doi101073pnas1001373107)

                                        111 Honey J G Harrison J A Prothero D R ampStevens M S 1998 Camelidae In Evolution of Tertiarymammals of North America terrestrial carnivoresungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp439ndash462 Cambridge UK Cambridge University Press

                                        112 Metais G amp Vislobokova I 2008 Basal ruminants In

                                        The evolution of artiodactyls (eds D R Prothero amp S EFoss) pp 189ndash212 Baltimore MD Johns HopkinsUniversity Press

                                        113 Harris J M amp Li-Ping L 2008 Superfamily SuoideaIn The evolution of artiodactyls (eds D R Prothero amp S

                                        E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

                                        114 Bowen G J Clyde W C Koch P L Ting SAlroy J Tsubamoto T Wang Y amp Wang Y 2002Mammalian dispersal at the PaleoceneEocene bound-

                                        ary Science 295 2062ndash2065 (doi101126science1068700)

                                        115 Smith T Rose K D amp Gingerich P D 2006 RapidAsia-Europe-North America geographic dispersal of

                                        earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

                                        116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

                                        117 Colbert M W amp Schoch R M 1998 Tapiroidea and

                                        other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

                                        118 Dashzeveg D 1996 Some carnivorous mammals fromthe Paleogene of the Eastern Gobi Desert Mongoliaand the application of Oligocene carnivores to strati-graphic correlation Am Mus Novit 3179 1ndash14

                                        119 Hunt Jr R M 1998 Evolution of the aeluroid Carni-vora diversity of the earliest aeluroids from Eurasia(Quercy Hsanda-Gol) and the origin of felids AmMus Novit 3252 1ndash65

                                        120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

                                        cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

                                        121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

                                        122 Huelsenbeck J P amp Ronquist F 2001 MrBAYESBayesian inference of phylogenetic trees Bioinformatics17 754ndash755 (doi101093bioinformatics178754)

                                        123 Ronquist F amp Huelsenbeck J P 2003 MrBayes 3Bayesian phylogenetic inference under mixed modelsBioinformatics 19 1572ndash1574 (doi101093bioinfor-maticsbtg180)

                                        2500 M S Springer et al Mammalian historical biogeography

                                        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

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                                        125 Asher R J Novacek M J amp Geisler J G 2003

                                        Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

                                        126 Zack S P Penkrot T A Bloch J I amp Rose K D

                                        2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

                                        127 Tabuce R Marivaux L Adaci M Bensalah M

                                        Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

                                        128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

                                        129 Simpson G G 1951 History of the fauna of Latin

                                        America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

                                        130 Simpson G G 1978 Early mammals in South Amer-ica fact controversy and mystery Proc Am PhilSoc 122 318ndash328

                                        131 Archibald J D 1996 Fossil evidence for a Late Cretac-eous origin of lsquohoofedrsquo mammals Science 272 1150ndash1153 (doi101126science27252651150)

                                        132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

                                        133 Cifelli R L amp Davis B M 2003 Marsupial origins

                                        Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

                                        2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

                                        135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

                                        eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

                                        136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

                                        pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

                                        W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

                                        260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

                                        N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

                                        139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

                                        Phil Trans R Soc B (2011)

                                        140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

                                        141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

                                        0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

                                        roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

                                        of mammals Proc Natl Acad Sci USA 106 5235ndash5240

                                        143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

                                        144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

                                        145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

                                        146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

                                        73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

                                        dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

                                        148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

                                        108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

                                        dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                                        37091305110239)150 McCall R 1997 Implications of recent geological

                                        investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

                                        151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

                                        152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

                                        153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

                                        154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

                                        155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

                                        caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

                                        156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

                                        Mammalian historical biogeography M S Springer et al 2501

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                                        revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

                                        157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

                                        158 Rowe D L Dunn K A Adkins R M amp Honeycutt

                                        R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

                                        159 Beard K C Wang B Dawson M Huang X amp

                                        Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

                                        160 Beard K C amp Wang J 2004 The eosimiid primates

                                        (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

                                        161 Arnason U Gullberg A Schweizer B A amp Janke A

                                        2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

                                        162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

                                        163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

                                        164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

                                        513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

                                        ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

                                        AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

                                        diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

                                        167 Gunnell G F amp Simmons N B 2005 Fossil evidence

                                        and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                                        168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                                        Wyoming and the evolution of flight and echolocationNature 451 818ndash822

                                        169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

                                        paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                                        170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

                                        171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

                                        ian evolution Science 302 1934ndash1939 (doi101126science1090718)

                                        172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

                                        Phil Trans R Soc B (2011)

                                        dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                                        173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

                                        D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

                                        174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

                                        from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                                        175 Cifelli R L 1993 Theria of metatherianndasheutherian

                                        grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                                        176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                                        177 Wible J R 1990 Late Cretaceous marsupial petrosal

                                        bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                                        178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                                        pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                                        179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                                        of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                                        180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                                        2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                                        181 Beck R M Godthelp H Weisbecker V Archer M

                                        amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                                        182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                                        Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                                        183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                                        for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                                        184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                                        implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                                        185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                                        phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                                        186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                                        marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                                        187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                                        2502 M S Springer et al Mammalian historical biogeography

                                        on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                        mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                                        188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                                        189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                                        190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                                        Phil Trans R Soc B (2011)

                                        Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                                        191 Springer M S amp Krajewski C 2009 Monotremes

                                        (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                                        192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                                        53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                                        In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                                        194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                                        • The historical biogeography of Mammalia
                                          • Introduction
                                          • Phylogeny reconstruction
                                          • Molecular dating analyses
                                          • Ancestral area reconstruction
                                          • Box 1
                                          • Ancestral area chronograms and palaeogeography
                                          • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                                          • Placental biogeography
                                          • The importance of dispersal
                                          • Bat biogeography
                                          • Marsupial biogeography
                                          • Monotreme biogeography
                                          • Conclusions
                                          • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
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                                          dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

                                          148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

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                                          dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                                          37091305110239)150 McCall R 1997 Implications of recent geological

                                          investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

                                          151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

                                          152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

                                          153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

                                          154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

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                                          caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

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                                          2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

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                                          ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

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                                          diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

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                                          and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                                          168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                                          Wyoming and the evolution of flight and echolocationNature 451 818ndash822

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                                          paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                                          170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

                                          171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

                                          ian evolution Science 302 1934ndash1939 (doi101126science1090718)

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                                          Phil Trans R Soc B (2011)

                                          dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                                          173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

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                                          from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

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                                          grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                                          176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                                          177 Wible J R 1990 Late Cretaceous marsupial petrosal

                                          bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                                          178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                                          pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                                          179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                                          of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                                          180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                                          2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                                          181 Beck R M Godthelp H Weisbecker V Archer M

                                          amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                                          182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                                          Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                                          183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                                          for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                                          184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                                          implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                                          185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                                          phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                                          186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                                          marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                                          187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                                          2502 M S Springer et al Mammalian historical biogeography

                                          on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                          mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                                          188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                                          189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                                          190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                                          Phil Trans R Soc B (2011)

                                          Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                                          191 Springer M S amp Krajewski C 2009 Monotremes

                                          (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                                          192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                                          53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                                          In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                                          194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                                          • The historical biogeography of Mammalia
                                            • Introduction
                                            • Phylogeny reconstruction
                                            • Molecular dating analyses
                                            • Ancestral area reconstruction
                                            • Box 1
                                            • Ancestral area chronograms and palaeogeography
                                            • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                                            • Placental biogeography
                                            • The importance of dispersal
                                            • Bat biogeography
                                            • Marsupial biogeography
                                            • Monotreme biogeography
                                            • Conclusions
                                            • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
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                                            America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

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                                            131 Archibald J D 1996 Fossil evidence for a Late Cretac-eous origin of lsquohoofedrsquo mammals Science 272 1150ndash1153 (doi101126science27252651150)

                                            132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

                                            133 Cifelli R L amp Davis B M 2003 Marsupial origins

                                            Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

                                            2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

                                            135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

                                            eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

                                            136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

                                            pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

                                            W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

                                            260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

                                            N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

                                            139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

                                            Phil Trans R Soc B (2011)

                                            140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

                                            141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

                                            0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

                                            roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

                                            of mammals Proc Natl Acad Sci USA 106 5235ndash5240

                                            143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

                                            144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

                                            145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

                                            146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

                                            73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

                                            dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

                                            148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

                                            108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

                                            dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                                            37091305110239)150 McCall R 1997 Implications of recent geological

                                            investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

                                            151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

                                            152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

                                            153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

                                            154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

                                            155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

                                            caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

                                            156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

                                            Mammalian historical biogeography M S Springer et al 2501

                                            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                            revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

                                            157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

                                            158 Rowe D L Dunn K A Adkins R M amp Honeycutt

                                            R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

                                            159 Beard K C Wang B Dawson M Huang X amp

                                            Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

                                            160 Beard K C amp Wang J 2004 The eosimiid primates

                                            (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

                                            161 Arnason U Gullberg A Schweizer B A amp Janke A

                                            2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

                                            162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

                                            163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

                                            164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

                                            513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

                                            ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

                                            AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

                                            diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

                                            167 Gunnell G F amp Simmons N B 2005 Fossil evidence

                                            and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                                            168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                                            Wyoming and the evolution of flight and echolocationNature 451 818ndash822

                                            169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

                                            paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                                            170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

                                            171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

                                            ian evolution Science 302 1934ndash1939 (doi101126science1090718)

                                            172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

                                            Phil Trans R Soc B (2011)

                                            dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                                            173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

                                            D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

                                            174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

                                            from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                                            175 Cifelli R L 1993 Theria of metatherianndasheutherian

                                            grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                                            176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                                            177 Wible J R 1990 Late Cretaceous marsupial petrosal

                                            bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                                            178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                                            pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                                            179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                                            of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                                            180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                                            2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                                            181 Beck R M Godthelp H Weisbecker V Archer M

                                            amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                                            182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                                            Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                                            183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                                            for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                                            184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                                            implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                                            185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                                            phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                                            186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                                            marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                                            187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                                            2502 M S Springer et al Mammalian historical biogeography

                                            on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                            mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                                            188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                                            189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                                            190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                                            Phil Trans R Soc B (2011)

                                            Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                                            191 Springer M S amp Krajewski C 2009 Monotremes

                                            (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                                            192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                                            53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                                            In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                                            194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                                            • The historical biogeography of Mammalia
                                              • Introduction
                                              • Phylogeny reconstruction
                                              • Molecular dating analyses
                                              • Ancestral area reconstruction
                                              • Box 1
                                              • Ancestral area chronograms and palaeogeography
                                              • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                                              • Placental biogeography
                                              • The importance of dispersal
                                              • Bat biogeography
                                              • Marsupial biogeography
                                              • Monotreme biogeography
                                              • Conclusions
                                              • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
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                                              E Foss) pp 130ndash150 Baltimore MD Johns HopkinsUniversity Press

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                                              earliest Eocene primate Teilhardina during the Paleo-cenendashEocene thermal maximum Proc Natl Acad SciUSA 103 11223ndash11227 (doi101073pnas0511296103)

                                              116 Prothero D R 1998 Hyracodontidae In Evolutionof Tertiary mammals of North America terrestrial carni-vores ungulates and ungulatelike mammals vol 1 (edsC M Janis K M Scott amp L L Jacobs) pp 589ndash594 Cambridge UK Cambridge University Press

                                              117 Colbert M W amp Schoch R M 1998 Tapiroidea and

                                              other moropomorphs In Evolution of Tertiary mammalsof North America terrestrial carnivores ungulates andungulatelike mammals vol 1 (eds C M Janis K MScott amp L L Jacobs) pp 569ndash582 Cambridge UKCambridge University Press

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                                              120 Spaulding M amp Flynn J J 2009 Anatomy of the post-

                                              cranial skeleton of lsquoMiacisrsquo uintensis (MammaliaCarnivoramorpha) J Vertebr Paleontol 29 1212ndash1223 (doi1016710390290408)

                                              121 Storch G 2003 Fossil Old World lsquoedentatesrsquo InMorphological studies in fossil and extant Xen-arthra (Mammalia) Senckenbergiana biologica 83 (edsR A Farina S F Vizcaıno amp G Storch) pp 51ndash60Germany Schweizerbart Science Publishers

                                              122 Huelsenbeck J P amp Ronquist F 2001 MrBAYESBayesian inference of phylogenetic trees Bioinformatics17 754ndash755 (doi101093bioinformatics178754)

                                              123 Ronquist F amp Huelsenbeck J P 2003 MrBayes 3Bayesian phylogenetic inference under mixed modelsBioinformatics 19 1572ndash1574 (doi101093bioinfor-maticsbtg180)

                                              2500 M S Springer et al Mammalian historical biogeography

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                                              125 Asher R J Novacek M J amp Geisler J G 2003

                                              Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

                                              126 Zack S P Penkrot T A Bloch J I amp Rose K D

                                              2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

                                              127 Tabuce R Marivaux L Adaci M Bensalah M

                                              Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

                                              128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

                                              129 Simpson G G 1951 History of the fauna of Latin

                                              America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

                                              130 Simpson G G 1978 Early mammals in South Amer-ica fact controversy and mystery Proc Am PhilSoc 122 318ndash328

                                              131 Archibald J D 1996 Fossil evidence for a Late Cretac-eous origin of lsquohoofedrsquo mammals Science 272 1150ndash1153 (doi101126science27252651150)

                                              132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

                                              133 Cifelli R L amp Davis B M 2003 Marsupial origins

                                              Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

                                              2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

                                              135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

                                              eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

                                              136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

                                              pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

                                              W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

                                              260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

                                              N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

                                              139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

                                              Phil Trans R Soc B (2011)

                                              140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

                                              141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

                                              0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

                                              roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

                                              of mammals Proc Natl Acad Sci USA 106 5235ndash5240

                                              143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

                                              144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

                                              145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

                                              146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

                                              73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

                                              dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

                                              148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

                                              108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

                                              dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                                              37091305110239)150 McCall R 1997 Implications of recent geological

                                              investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

                                              151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

                                              152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

                                              153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

                                              154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

                                              155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

                                              caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

                                              156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

                                              Mammalian historical biogeography M S Springer et al 2501

                                              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                              revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

                                              157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

                                              158 Rowe D L Dunn K A Adkins R M amp Honeycutt

                                              R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

                                              159 Beard K C Wang B Dawson M Huang X amp

                                              Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

                                              160 Beard K C amp Wang J 2004 The eosimiid primates

                                              (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

                                              161 Arnason U Gullberg A Schweizer B A amp Janke A

                                              2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

                                              162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

                                              163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

                                              164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

                                              513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

                                              ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

                                              AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

                                              diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

                                              167 Gunnell G F amp Simmons N B 2005 Fossil evidence

                                              and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                                              168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                                              Wyoming and the evolution of flight and echolocationNature 451 818ndash822

                                              169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

                                              paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                                              170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

                                              171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

                                              ian evolution Science 302 1934ndash1939 (doi101126science1090718)

                                              172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

                                              Phil Trans R Soc B (2011)

                                              dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                                              173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

                                              D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

                                              174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

                                              from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                                              175 Cifelli R L 1993 Theria of metatherianndasheutherian

                                              grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                                              176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                                              177 Wible J R 1990 Late Cretaceous marsupial petrosal

                                              bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                                              178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                                              pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                                              179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                                              of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                                              180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                                              2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                                              181 Beck R M Godthelp H Weisbecker V Archer M

                                              amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                                              182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                                              Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                                              183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                                              for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                                              184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                                              implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                                              185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                                              phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                                              186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                                              marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                                              187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                                              2502 M S Springer et al Mammalian historical biogeography

                                              on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                              mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                                              188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                                              189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                                              190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                                              Phil Trans R Soc B (2011)

                                              Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                                              191 Springer M S amp Krajewski C 2009 Monotremes

                                              (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                                              192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                                              53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                                              In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                                              194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                                              • The historical biogeography of Mammalia
                                                • Introduction
                                                • Phylogeny reconstruction
                                                • Molecular dating analyses
                                                • Ancestral area reconstruction
                                                • Box 1
                                                • Ancestral area chronograms and palaeogeography
                                                • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                                                • Placental biogeography
                                                • The importance of dispersal
                                                • Bat biogeography
                                                • Marsupial biogeography
                                                • Monotreme biogeography
                                                • Conclusions
                                                • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
                                                • REFERENCES

                                                2500 M S Springer et al Mammalian historical biogeography

                                                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                                124 Carroll R L 1988 Vertebrate paleontology and evolutionNew York NY W H Freeman and Company

                                                125 Asher R J Novacek M J amp Geisler J G 2003

                                                Relationships of endemic African mammals and theirfossil relatives based on morphological and molecularevidence J Mamm Evol 10 131ndash194 (doi101023A1025504124129)

                                                126 Zack S P Penkrot T A Bloch J I amp Rose K D

                                                2005 Affinities of lsquohyopsodontidsrsquo to elephant shrewsand a Holarctic origin of Afrotheria Nature 434 497ndash501 (doi101038nature03351)

                                                127 Tabuce R Marivaux L Adaci M Bensalah M

                                                Hartenberger J-L Mahboudi M Mebrouk F Taf-foreau P amp Jaeger J 2007 Early Tertiary mammalsfrom North Africa reinforce the molecular Afrotheriaclade Proc R Soc Lond B 274 1159ndash1166 (doi101098rspb20060229)

                                                128 Marshall L G Webb S D Sepkowski J J amp RaupD M 1982 Mammalian evolution and the Great Amer-ican Interchange Science 215 1351ndash1357 (doi101126science21545381351)

                                                129 Simpson G G 1951 History of the fauna of Latin

                                                America In Science in progress 7th series (ed G A Bait-sell) pp 369ndash408 New Haven CT Yale UniversityPress

                                                130 Simpson G G 1978 Early mammals in South Amer-ica fact controversy and mystery Proc Am PhilSoc 122 318ndash328

                                                131 Archibald J D 1996 Fossil evidence for a Late Cretac-eous origin of lsquohoofedrsquo mammals Science 272 1150ndash1153 (doi101126science27252651150)

                                                132 Archibald J D Averianov A O amp Ekdale E G 2001Oldest relatives of rabbits rodents and other extanteutherian mammals Nature 414 62ndash65 (doi10103835102048)

                                                133 Cifelli R L amp Davis B M 2003 Marsupial origins

                                                Science 302 1899ndash1900 (doi101126science1092272)134 Davis B M Cifelli R L amp Kielan-Jaworowska Z

                                                2008 Earliest evidence of Deltatheroida (MammaliaMetatheria) from the Early Cretaceous of North Amer-ica In Mammalian evolutionary morphology a tribute toFrederick S Szalay (eds E J Sargis amp M Dagosto)pp 3ndash24 Amsterdam The Netherlands Springer

                                                135 Boyer D M Prasad G V R Krause D W Godi-not M Goswami A Verma O amp Flynn J J 2010New postcrania of Deccanolestes from the Late Cretac-

                                                eous of India and their bearing on the evolutionaryand biogeographic history of euarchontan mammalsNaturwissenschaften 97 365ndash377 (doi101007s00114-010-0648-0)

                                                136 Nikolaev S Montoya-Burgos J I Margulies E HProgram N C S Rougemont J Nyffeler B amp Anto-narakis S E 2007 Early history of mammals iselucidated with the ENCODE multiple species sequen-cing data PLoS Genet 3 e2 (doi101371journal

                                                pgen0030002)137 van Dijk M A M Paradis E Catzeflis F amp de Jong

                                                W W 1999 The virtues of gaps xenarthran (edentate)monophyly supported by a unique deletion in aA-crys-tallin Syst Biol 48 94ndash106 (doi101080106351599

                                                260463)138 Nikaido M Nishihara H Hukumoto Y amp Okada

                                                N 2003 Ancient SINEs from African endemic mam-mals Mol Biol Evol 20 522ndash527 (doi101093molbevmsg052)

                                                139 Kriegs J O Churakov G Kiefmann M Jordan UBrosius J amp Schmitz J 2006 Retroposed elements asarchives for the evolutionary history of placental mam-mals PLoS Biol 4 e91 (doi101371journalpbio0040091)

                                                Phil Trans R Soc B (2011)

                                                140 Nishihara H Satta Y Nikaido M ThewissenJ G M Stanhope M J amp Okada N 2005 A retropo-son analysis of afrotherian phylogeny Mol Biol Evol22 1823ndash1833 (doi101093molbevmsi179)

                                                141 Nishihara H Hasegawa M amp Okada N 2006 Pega-soferae an unexpected mammalian clade revealed bytracking ancient retroposon insertions Proc NatlAcad Sci USA 103 9929ndash9934 (doi101073pnas

                                                0603797103)142 Nishihara H Maruyamab S amp Okada N 2009 Ret-

                                                roposon analysis and recent geological data suggestnear-simultaneous divergence of the three superorders

                                                of mammals Proc Natl Acad Sci USA 106 5235ndash5240

                                                143 Eagles G 2007 New angles on South Atlantic openingGeophys J Int 166 353ndash361 (doi101111j1365-246X200603206x)

                                                144 Torsvik T H Rousse S Labails C amp Smethurst MA 2009 A new scheme for the opening of the SouthAtlantic and the dissection of an Aptian salt basinGeophys J Int 177 1315ndash1333 (doi101111j1365-246X200904137x)

                                                145 Nelson G 1978 From Candolle to Croizat commentson the history of biogeography J Hist Biol 11 269ndash305 (doi101007BF00389302)

                                                146 de Queiroz A 2005 The resurrection of oceanic disper-sal in historical biogeography Trends Ecol Evol 20 68ndash

                                                73 (doi101016jtree200411006)147 Censky E J Hodge K amp Dudley J 1998 Over-water

                                                dispersal of lizards due to hurricanes Nature 395 556(doi10103826886)

                                                148 Poux C Madsen O Marquard E Vieites D R deJong W W amp Vences M 2005 Asynchronous coloniza-tion of Madagascar by the four endemic clades ofprimates tenrecs carnivores and rodents as inferredfrom nuclear genes Syst Biol 54 719ndash730 (doi10

                                                108010635150500234534)149 Yoder A D amp Nowak M D 2006 Has vicariance or

                                                dispersal been the predominant biogeographic force inMadagascar Only time will tell Annu Rev EcolEvol Syst 37 405ndash431 (doi101146annurevecolsys

                                                37091305110239)150 McCall R 1997 Implications of recent geological

                                                investigations of the Mozambique Channel for themammalian colonization of Madagascar Proc R SocLond B 264 663ndash665 (doi101098rspb19970094)

                                                151 Yoder A D Burns M M Zehr S Delefosse TVeron G Goodman S M amp Flynn J J 2003 Singleorigin of Malagasy Carnivora from an African ancestorNature 421 734ndash737 (doi101038nature01303)

                                                152 Poux C Madsen O Glos J de Jong W W ampVences M 2008 Molecular phylogeny and divergencetimes of Malagasy tenrecs influence of data partitioningand taxon sampling on dating analyses BMC Evol Biol8 102 (doi1011861471-2148-8-102)

                                                153 Stankiewicz J Thiart C Masters J C amp de WitM J 2006 Did lemurs have sweepstake tickets Anexploration of Simpsonrsquos model for the colonization ofMadagascar by mammals J Biogeogr 33 221ndash235(doi101111j1365-2699200501381x)

                                                154 Ali J R amp Huber M 2010 Mammalian biodiversity onMadagascar controlled by ocean currents Nature 463653ndash656 (doi101038nature08706)

                                                155 Poux C Chevret P Huchon D de Jong W W ampDouzery E J P 2006 Arrival and diversification of

                                                caviomorph rodents and platyrrhine primates in SouthAmerica Syst Biol 55 228ndash244 (doi10108010635150500481390)

                                                156 Blanga-Kanfi S Miranda H Penn O Pupko TDeBry R W amp Huchon D 2009 Rodent phylogeny

                                                Mammalian historical biogeography M S Springer et al 2501

                                                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                                revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

                                                157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

                                                158 Rowe D L Dunn K A Adkins R M amp Honeycutt

                                                R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

                                                159 Beard K C Wang B Dawson M Huang X amp

                                                Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

                                                160 Beard K C amp Wang J 2004 The eosimiid primates

                                                (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

                                                161 Arnason U Gullberg A Schweizer B A amp Janke A

                                                2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

                                                162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

                                                163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

                                                164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

                                                513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

                                                ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

                                                AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

                                                diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

                                                167 Gunnell G F amp Simmons N B 2005 Fossil evidence

                                                and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                                                168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                                                Wyoming and the evolution of flight and echolocationNature 451 818ndash822

                                                169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

                                                paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                                                170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

                                                171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

                                                ian evolution Science 302 1934ndash1939 (doi101126science1090718)

                                                172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

                                                Phil Trans R Soc B (2011)

                                                dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                                                173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

                                                D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

                                                174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

                                                from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                                                175 Cifelli R L 1993 Theria of metatherianndasheutherian

                                                grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                                                176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                                                177 Wible J R 1990 Late Cretaceous marsupial petrosal

                                                bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                                                178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                                                pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                                                179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                                                of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                                                180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                                                2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                                                181 Beck R M Godthelp H Weisbecker V Archer M

                                                amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                                                182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                                                Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                                                183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                                                for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                                                184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                                                implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                                                185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                                                phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                                                186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                                                marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                                                187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                                                2502 M S Springer et al Mammalian historical biogeography

                                                on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                                mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                                                188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                                                189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                                                190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                                                Phil Trans R Soc B (2011)

                                                Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                                                191 Springer M S amp Krajewski C 2009 Monotremes

                                                (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                                                192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                                                53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                                                In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                                                194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                                                • The historical biogeography of Mammalia
                                                  • Introduction
                                                  • Phylogeny reconstruction
                                                  • Molecular dating analyses
                                                  • Ancestral area reconstruction
                                                  • Box 1
                                                  • Ancestral area chronograms and palaeogeography
                                                  • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                                                  • Placental biogeography
                                                  • The importance of dispersal
                                                  • Bat biogeography
                                                  • Marsupial biogeography
                                                  • Monotreme biogeography
                                                  • Conclusions
                                                  • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
                                                  • REFERENCES

                                                  Mammalian historical biogeography M S Springer et al 2501

                                                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                                  revised analysis of six nuclear genes from all majorrodent clades BMC Evol Biol 9 71 (doi1011861471-2148-9-71)

                                                  157 Hasegawa M Thorne J L amp Kishino H 2003 Timescale of eutherian evolution estimated without assuminga constant rate of molecular evolution Genes Gen Syst78 267ndash283 (doi101266ggs78267)

                                                  158 Rowe D L Dunn K A Adkins R M amp Honeycutt

                                                  R L 2010 Molecular clocks keep dispersal hypothesesafloat evidence for trans-Atlantic rafting by rodentsJ Biogeogr 7 305ndash324

                                                  159 Beard K C Wang B Dawson M Huang X amp

                                                  Tong Y 1996 Earliest complete dentition of an anthro-poid primate from the late middle Eocene of ShanxiProvince China Science 272 82ndash85 (doi101126science272525882)

                                                  160 Beard K C amp Wang J 2004 The eosimiid primates

                                                  (Anthropoidea) of the Heti Formation Yuanqu BasinShanxi and Henan Provinces Peoplersquos Republic ofChina J Hum Evol 46 401ndash432 (doi101016jjhevol200401002)

                                                  161 Arnason U Gullberg A Schweizer B A amp Janke A

                                                  2000 Molecular estimates for primate dispersal and theorigin of modern humans Hereditas 133 217ndash228(doi101111j1601-5223200000217x)

                                                  162 Lavocat R 1969 La systematique des rongeurs hystri-comorphes et la derive des continents C R AcadSci Ser D 269 1496ndash1497

                                                  163 Hussain S T de Bruijn H amp Leinders J M 1978Middle Eocene rodents from the Kala Chitta Range(Punjab Pakistan) (III) Proc Kon Ned AkadWetensch Ser B 81 101ndash112

                                                  164 Wood A E 1985 The relationships origin and disper-sal of the hystricognathous rodents In Evolutionaryrelationships among rodents a multidisciplinary analysis(eds W P Luckett amp J-L Hartenberger) pp 475ndash

                                                  513 New York NY Plenum165 Houle A 1999 The origin of platyrrhines an evalu-

                                                  ation of the Antarctic scenario and the floating islandmodel Am J Phys Anthropol 109 541ndash559 (doi101002(SICI)1096-8644(199908)1094541AID-

                                                  AJPA930CO2-N)166 Tattersall I 2005 Mechanisms of faunal origin and

                                                  diversity in island environments the case of Madagas-carrsquos mammals Hellenic J Geosci 41 35ndash46

                                                  167 Gunnell G F amp Simmons N B 2005 Fossil evidence

                                                  and the origin of bats J Mamm Evol 12 209ndash246(doi101007s10914-005-6945-2)

                                                  168 Simmons N B Seymour K L Habersetzer J ampGunnel G F 2008 Primitive early Eocene bat from

                                                  Wyoming and the evolution of flight and echolocationNature 451 818ndash822

                                                  169 Sige B 1991 Rhinolophoidae et Vespertilionoidea(Chiroptera) du Chambi (Eocene inferieur de Tunisie)Aspects biostratigraphique biogeographique and

                                                  paleoecologique de lrsquoorigine des chiropters modernesNeues Jahrb Geol Palaontol Abh 182 355ndash376

                                                  170 Hand S J amp Kirsch J A W 1998 A southern originfor the Hipposideridae (Microchiroptera) Evidencefrom the Australian fossil record In Bats phylogenymorphology echolocation and conservation biology (edsT H Kunz amp P A Racey) pp 72ndash90 WashingtonDC Smithsonian Institution Press

                                                  171 Luo Z-X Ji Q Wible J R amp Yuan X 2003 AnEarly Cretaceous tribosphenic mammal and metather-

                                                  ian evolution Science 302 1934ndash1939 (doi101126science1090718)

                                                  172 Martin J E Case J A Jagt J W M Schulp A S ampMulder E W A 2005 A new European marsupial indi-cates a Late Cretaceous high-latitude transatlantic

                                                  Phil Trans R Soc B (2011)

                                                  dispersal route J Mamm Evol 12 495ndash511 (doi101007s10914-005-7330-x)

                                                  173 Vullo R Gheerbrant E de Muizon C amp Neraudeau

                                                  D 2009 The oldest modern therian mammal fromEurope and its bearing on stem marsupial paleobiogeo-graphy Proc Natl Acad Sci USA 106 19 910ndash19 915

                                                  174 Cifelli R L 1990 Cretaceous mammals of SouthernUtah II marsupials and marsupialndashlike mammals

                                                  from the Wahweap Formation (Early Campanian)J Vertebr Paleontol 10 320ndash331 (doi10108002724634199010011817)

                                                  175 Cifelli R L 1993 Theria of metatherianndasheutherian

                                                  grade and the origin of marsupials In Mammal phylo-geny Mesozoic differentiation multituberculatesmonotremes early therians and marsupials vol 1 (edsF S Szalay M J Novacek amp M C McKenna) pp205ndash215 Berlin Germany Springer

                                                  176 Cifelli R L 2004 Marsupial mammals from the Albian-Cenomanian (Early-Late Cretaceous) boundary UtahBull Am Mus Nat Hist 285 62ndash79 (doi1012060003-0090(2004)2850062C20CO2)

                                                  177 Wible J R 1990 Late Cretaceous marsupial petrosal

                                                  bones from North America and a cladistic analysis ofthe petrosal in therian mammals J Vertebr Paleontol10 183ndash205 (doi10108002724634199010011807)

                                                  178 Cifelli R L amp de Muizon C 1997 Dentition and jawof Kokopellia juddi a primitive marsupial or near-marsu-

                                                  pial from the medial Cretaceous of Utah J MammEvol 4 241ndash258 (doi101023A1027394430433)

                                                  179 Case J A Goin F J amp Woodburne M O 2005lsquoSouth Americanrsquo marsupials from the Late Cretaceous

                                                  of North America and the origin of marsupial cohortsJ Mamm Evol 11 223ndash255 (doi101023BJOMM00000473393963082)

                                                  180 Amrine-Madsen H Scally M Westerman MStanhope M J Krajewski C amp Springer M S

                                                  2003 Nuclear gene sequences provide evidence for themonophyly of australidelphian marsupials MolPhylogenet Evol 28 186ndash196 (doi101016S1055-7903(03)00122-2)

                                                  181 Beck R M Godthelp H Weisbecker V Archer M

                                                  amp Hand S J 2008 Australiarsquos oldest marsupial fossilsand their biogeographical implications PLoS ONE 3e1858 (doi101371journalpone0001858)

                                                  182 Springer M S Krajewski C amp Meredith R W 2009Marsupials (Metatheria) In The timetree of life (eds S B

                                                  Hedges amp S Kumar) pp 466ndash470 Oxford UKOxford University Press

                                                  183 Kirsch J A W Dickerman A W Reig O A ampSpringer M S 1991 DNA hybridization evidence

                                                  for the Australasian affinity of the American marsupialDromiciops australis Proc Natl Acad Sci USA 8810 465ndash10 469 (doi101073pnas882310465)

                                                  184 Kirsch J A W Lapointe F-J amp Springer M S 1997DNA-hybridisation studies of marsupials and their

                                                  implications for metatherian classificationAust J Zool 45 211ndash280 (doi101071ZO96030)

                                                  185 Springer M S Westerman M Kavanagh J R BurkA Woodburne M O Kao D amp Krajewski C 1998The origin of the Australasian marsupial fauna and the

                                                  phylogenetic affinities of the enigmatic monito delmonte and marsupial mole Proc R Soc Lond B 2652381ndash2386 (doi101098rspb19980587)

                                                  186 Nilsson M A Churakov G Sommer M Tran NV Zemann A Brosius J amp Schmitz J 2010 Tracking

                                                  marsupial evolution using archaic genomic retroposoninsertions PLoS Biol 8 e1000436 (doi101371jour-nalpbio1000436)

                                                  187 Woodburne M O amp Case J A 1996 Dispersal vicar-iance and the Late Cretaceous to early Tertiary land

                                                  2502 M S Springer et al Mammalian historical biogeography

                                                  on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                                  mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                                                  188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                                                  189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                                                  190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                                                  Phil Trans R Soc B (2011)

                                                  Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                                                  191 Springer M S amp Krajewski C 2009 Monotremes

                                                  (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                                                  192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                                                  53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                                                  In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                                                  194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                                                  • The historical biogeography of Mammalia
                                                    • Introduction
                                                    • Phylogeny reconstruction
                                                    • Molecular dating analyses
                                                    • Ancestral area reconstruction
                                                    • Box 1
                                                    • Ancestral area chronograms and palaeogeography
                                                    • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                                                    • Placental biogeography
                                                    • The importance of dispersal
                                                    • Bat biogeography
                                                    • Marsupial biogeography
                                                    • Monotreme biogeography
                                                    • Conclusions
                                                    • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
                                                    • REFERENCES

                                                    2502 M S Springer et al Mammalian historical biogeography

                                                    on October 29 2012rstbroyalsocietypublishingorgDownloaded from

                                                    mammal biogeography from South America to Austra-lia J Mamm Evol 3 121ndash161 (doi101007BF01454359)

                                                    188 Rowe T Rich T H VickersndashRich P Springer MS amp Woodburne M O 2008 The oldest platypusand its bearing on divergence timing of the platypusand echidna clades Proc Natl Acad Sci USA 1051238ndash1242 (doi101073pnas0706385105)

                                                    189 Woodburne M O Rich T H amp Springer M S 2003The evolution of tribospheny and the antiquity of mam-malian clades Mol Phylogenet Evol 28 360ndash385(doi101016S1055-7903(03)00113-1)

                                                    190 Phillips M J Bennetta T H amp Lee M S Y 2009Molecules morphology and ecology indicate a recentamphibious ancestry for echidnas Proc Natl Acad

                                                    Phil Trans R Soc B (2011)

                                                    Sci USA 106 17 089ndash17 094 (doi101073pnas0904649106)

                                                    191 Springer M S amp Krajewski C 2009 Monotremes

                                                    (Prototheria) In The timetree of life (eds S B Hedges ampS Kumar) pp 462ndash465 Oxford UK OxfordUniversity Press

                                                    192 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2001Dual origin of tribosphenic mammals Nature 409

                                                    53ndash57 (doi10103835051023)193 Luo Z-X Cifelli R L amp Kielan-Jaworowska Z 2002

                                                    In quest for a phylogeny of Mesozoic mammals ActaPalaeont Polon 47 1ndash78

                                                    194 Kielan-Jaworowska Z Cifelli R L amp Luo X 2004Mammals from the age of dinosaursmdashorigins evolutionand structure New York NY Columbia University Press

                                                    • The historical biogeography of Mammalia
                                                      • Introduction
                                                      • Phylogeny reconstruction
                                                      • Molecular dating analyses
                                                      • Ancestral area reconstruction
                                                      • Box 1
                                                      • Ancestral area chronograms and palaeogeography
                                                      • Placental phylogeny and a comparison of different ancestral area reconstruction methods
                                                      • Placental biogeography
                                                      • The importance of dispersal
                                                      • Bat biogeography
                                                      • Marsupial biogeography
                                                      • Monotreme biogeography
                                                      • Conclusions
                                                      • MSS and WJM acknowledge support from NSF Three anonymous reviewers provided helpful comments on an earlier draft of this manuscript We thank Kate Jones for inviting us to contribute to this volume
                                                      • REFERENCES

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