The German Centre for Documentation and Information in Agriculture PGR-Forum European Crop Wild Relative Diversity Assessment and Conservation Forum 5.-7.2.2003.
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The German Centre for Documentation and Information in Agriculture
PGR-Forum European Crop Wild Relative Diversity Assessment and Conservation Forum
5.-7.2.2003 Thessaloniki
Introduction to WP 3Workshop on „Data management methodologies“
Sabine Roscher
The German Centre for Documentation and Information in Agriculture
•Introduction
•Main area on expertise
•Interrelation Workshop / Documentation and Information Network
•Date and location of WS
•Introduction to WS topic - Examples
•WS agenda
•WS products
Outline
The German Centre for Documentation and Information in Agriculture
The German Centre for Documentation and Information in Agriculture (ZADI)
is the scientific information institute of the Federal Ministry of Consumer Protection, Food and Agriculture (BMVEL).
Gives Advice and support in all questions of information management for BMVEL and for the Federal Research
Information Centre for Biological Diversity (IBV)
Institution
The German Centre for Documentation and Information in Agriculture
Collection, documentation and dissemination of information at thenational, EU- and international level;
Advisory services to German Federal Ministry for ConsumerProtection, Food and Agriculture and other Federal and Laenderministries on general issues related to supporting measures andpolitical decision making in the field of genetic resources;
Technical and administrative coordinating activities of national, EU-and international measures and programmes;
Research and development activities in the area of information anddocumentation of genetic resources including collection anddissemination of information to improve measures of conservationand sustainable utilization of genetic resources;
Secretariat of the envisaged National Board of Genetic Resourcesfor Food, Agriculture and Forestry.
Objectives IBV www.zadi.de/ibv/en/
Institution
The German Centre for Documentation and Information in Agriculture
Data bases (selection)
PGRDEU - Collections of Plant Genetic Resources in Germany
passport data for approximatly 160,000 accessionof more than 1,800 species in 53 holding institutions
source: most important German genebanks (IPK and BAZ)and other national ex situ collections.
www.genres.de/pgrdeu
FGRDEU - Holdings of Forest Genetic Resources in Germany
Data on 130 principal and secondary trees and shrub species
www.genres.de/fgrdeu.......
The German Centre for Documentation and Information in Agriculture
Information on in situ and ex situ PGR in Germany
RUBCollections of German
botanical Gardens
RUBCollections of German
botanical Gardens
BfNWild flora of Germany;
Protected species
ZADIInformation technology
Ex situ resources
ZADIInformation technology
Ex situ resources
IPKGenebank accessions;
Taxonomy of cultivated plants
IPKGenebank accessions;
Taxonomy of cultivated plants
BIGIntegrated information system
combining distributed and heterogeneous databases
BIGIntegrated information system
combining distributed and heterogeneous databases
BfN: Federal Agency for Nature Conservation, BonnRUB: Botanical Garden Ruhr-University Bochum, Accosiation of Botanic Gardens in Germany, BochumIPK: Institute for Plant Genetics and Crop Plant Research, GaterslebenZADI: German Centre for Documentation and Information in Agriculture, Bonn
BfNWild flora of Germany;
Protected species
BfNWild flora of Germany;
Protected species
Federal Information System Genetic Resources (BIG)
The German Centre for Documentation and Information in Agriculture
Cross-Data Base Search
BIG
Sources of PGR in Germany
Ex situ In situ
Taxonomy Descriptors Geography
User
Federal Information System Genetic Resources (BIG)
Steering Committee
CoordinatingSecretariat
CerealsNetwork
CerealsNetwork
ForagesNetwork
ForagesNetwork
VegetablesNetwork
VegetablesNetwork
GrainLegumesNetwork
GrainLegumesNetwork
Fruit Network
Fruit Network
Minorcrops
Network
Minorcrops
Network
Industrialcrops and
potatoNetwork
Industrialcrops and
potatoNetwork
Documentation and Information NetworkDocumentation and Information Network
In situ and on farm conservation NetworkIn situ and on farm conservation Network
Technical cooperation NetworkTechnical cooperation Network
European Cooperative Programme (ECP/GR)
The German Centre for Documentation and Information in Agriculture
ECP/GR-Network on Documentation and Information
present focus:
• Ex-situ-Collections
• In-situ-occurrence (incl. „on farm.“)
• Passport data• Characterization data• Evaluation data
• cultivated plants in agriculture, horticulture, fruit growing, viticulture• wild relatives of cultivated plants
ECP/GR-Network on Documentation and Information
future relevance:
The German Centre for Documentation and Information in Agriculture
Information Elements (selection)
• online products (increasing importance)
• ECP/GR website http://www.ecpgr.cgiar.org/Networks/Info_doc/info_doc.htm
• National Inventoriesfocus on passport data
• European Search Catalogue (EURISCO)focus on a subset of National Inventories´ data
• European Central Crop Databases (ECCDB)in future focus on characterization and evaluation data
• data exchange format
• IPGRI/FAO Multicrop Passport Descriptors
ECP/GR-Network on Documentation and Information
The German Centre for Documentation and Information in Agriculture
Workshop
Praha, Czech Republic
07.09.03 Arrival PGR-Forum Partners
08.09.03 PGR-Forum
09.09.03 PGR-Forum
10.09.03 PGR-Forum
EPGRIS-Partners
11.09.03 PGR-Forum
EPGRIS partners
EPGRIS NI-FP
ECCDB Managers
12.09.03 EPGRIS
ECCDB
13.09.03 EPGRIS
ECP/GR Documentation and Information NetworkPGR-Forum, EPGRIS (final meeting)
The German Centre for Documentation and Information in Agriculture
D09: Define appropiate in situ genetic conservation data types
D10: Design appropriate database structures and data visualisation tools
D11: Design in situ genetic conservation data management and analysis techniques including GIS
D12: Publish data management methodology
WP3: Workshop „Data management methodologies“
Deliverables:
Agenda based upon the project proposal:
The German Centre for Documentation and Information in Agriculture
Workshop
Do we have distribution maps on all the species?
How does distribution match with protected areas ?
What do we really know if a population is within a nature park ?
What about populations outside protected areas ?
What do we have to know about data quality if we mix data from different sources ?
Which Standards?
The German Centre for Documentation and Information in Agriculture
Distribution of Vicia sativa subsp. sativa in Germany
Data source:Bundesamt f. Naturschutz(BfN)
Distribution of Vicia sativa subsp. Sativa in Germany
Data source:Bundesamt f. Naturschutz (BfN)
Protected areas (selection) Occurence of Vicia sativa ssp. Sativain protected areas
The German Centre for Documentation and Information in Agriculture
Same species, different mapping organisations, different statements
The German Centre for Documentation and Information in Agriculture
Products form WS 1: Debate (followed up by Email):
„GIS-Dataset“: Protected Areas Elevation Climate Soil Vegetation Ecological Regions ........
species list data types
-> SurveyDistribution maps available? (wild species)GIS-Datasets available?Meta data? (source, scale, quality,.....)
Workshop
Preparations prior to WS 3
The German Centre for Documentation and Information in Agriculture
Session 1: Data types - data availability - review of survey results - data sources (in situ | on farm)
- specimens, herbaria
Session 2: Data management - quality standards - data security, IPR - maintenance, stewardship,
- data use - target population management data - associated population management data
Workshop 3
The German Centre for Documentation and Information in Agriculture
Session 3: Analysis techniques- spatial analysis- numeric analysis- modelling
- ....- space and time
Session 4: Visualisation tools- which tools available- what else is needed- open source- Internet - PC- change in time- ....
Workshop 3
The German Centre for Documentation and Information in Agriculture
Session 5: Data(base) structures- Standards (OpenGIS, GML, ...)- Definition of data structure for in situ conservation (in situ | on farm)
Session 6: Relationship between PGR-Forum and EPGRIS data(base)structures technical matters
Multicrop Passport Descriptor Listexchange format ex situ dataexchange format in situ data ?
Organisational matters
Publication of Data management methodology
Workshop 3
The German Centre for Documentation and Information in Agriculture
WS - Products
• List of data types (spatial data and non spatial data)
• Meta-Data for these data types
• Methodology for data management
• Methodology for analysis techniques
• Visualisation tools
• Data structure for exchange
• Organisation structure for exchange
Workshop 3
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