Roberto Marabini Images from: XXVI VAKKI SYMPOSIUM – 10-11-12 February 2006 - Vaasa, Finland.

Roberto Marabini

Ontology in3DEM

Images from: XXVI VAKKI SYMPOSIUM – 10-11-12 February 2006 - Vaasa, Finland

An Ontology is…

Web search result for: Ontology (17,000,000)

The Promise

“helpful to communicate information across people

and systems…”

An Ontology is…Why we are using an

ontology

Store:

1. Kind of data used as Input/Output

2. Actual values

Proposal I: Relational Data Base, one table per program

Normalize

UID InputImage sampling method OutImage

1 Img0001.mrc 5.3 Background ImgNor0001.mrc

2 Img0002.mrc 5.3 Background ImgNor0002.mrc

3 Img0003.mrc 5.3 Background ImgNor0003.mrc

UID InputImage sampling method OutImage

1 Img0001.mrc 5.3 Background ImgNor0001.mrc

2 Img0002.mrc 5.3 Background ImgNor0002.mrc

3 Img0003.mrc 5.3 Background ImgNor0003.mrc

UID InputImage sampling method OutImage

1 Img0001.mrc 5.3 Background ImgNor0001.mrc

2 Img0002.mrc 5.3 Background ImgNor0002.mrc

3 Img0003.mrc 5.3 Background ImgNor0003.mrc

UID InputImage sampling method OutImage

1 Img0001.mrc 5.3 Background ImgNor0001.mrc

2 Img0002.mrc 5.3 Background ImgNor0002.mrc

3 Img0003.mrc 5.3 Background ImgNor0003.mrc

UID InputImage sampling method OutImage

1 Img0001.mrc 5.3 Background ImgNor0001.mrc

2 Img0002.mrc 5.3 Background ImgNor0002.mrc

3 Img0003.mrc 5.3 Background ImgNor0003.mrc

UID InputImage sampling method OutImage

1 Img0001.mrc 5.3 Background ImgNor0001.mrc

2 Img0002.mrc 5.3 Background ImgNor0002.mrc

3 Img0003.mrc 5.3 Background ImgNor0003.mrc

UID InputImage sampling method OutImage

1 Img0001.mrc 5.3 Background ImgNor0001.mrc

2 Img0001.mrc 5.3 Background ImgNor0001_bis.mrc

3 Img0003.mrc 7.3 Background ImgNor0003.mrc

Proposal I: Relational Data Base, one table per program

NormalizeFilter…

imagesamplingRate…

Normalize, InputFile, imageNormalize, OutFile, imageNormalize, Sampling, samplingRate…

Run_001Run_002…

InputFile ,Img0001.mrc, Run_001Sampling, 5.6, run_001…

requiredisjoint…

Method, require, radius

…

Radius is required iif method=background…

hasCompulsoryParameterisa…

programnormalize…

normalize, program, isa…

Subject Verb predicate

Normalize Isa Program

InputImage hasType image

Normalize hascompulsoryAtribute InputImage

…. …. ….

Ontology or not ontology,that is the question.

Ontology: focus in 3DEM image processing

Technology• Persistence layer: EMPIRE (JPA for RDF) -> JENA –

SPARQL. https://github.com/mhgrove/Empire• DataBase: TDB http

://incubator.apache.org/jena/documentation/tdb/• Concurrency: Fusseki http

://incubator.apache.org/jena/documentation/serving_data/index.html

• Conventions web (test)

Question

Copyright © 2005 Univ. of Manchester23

Coche

Automobile

Voiture

Araba

The Car

Copyright © 2005 Univ. of Manchester24

Coche

Automobile

Voiture

Araba

The Car

(A little bit of ontologies)

Person Country

Class (concept)

Animal

Individual (instance)

Belgium

Paraguay

China

Latvia

Elvis

Hai

Holger

Kylie

S.Claus

Rudolph

Flipper arrow = relationshiplabel = Property

lives_in

lives_in

lives_in

has_pet

has_pet

has_

pet

Copyright © 2005 Univ. of Manchester26

Pizza

MargheritaPizza

VegetarianPizza

Spicy BeefPizza

PizzaTopping

Vegetabletopping

Tomatotopping

Mozzarellatopping

Cheesetopping

Pizza_base

Deepdish base

Regularbase

A simple ontology: Pizzas

Ontology: focus in 3DEM image processing

(A little bit of ontologies)

107 ontologies