Biology in Silico : Online Tools for “Omics” ANSUMAN CHATTOPADHYAY, PHD HEAD, MOLECULAR BIOLOGY INFORMATION SERVICE HEALTH SCIENCES LIBRARY SYSTEM UNIVERSITY.
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Biology in Silico : Online Tools for “Omics”
ANSUMAN CHATTOPADHYAY, PHDHEAD, MOLECULAR BIOLOGY INFORMATION SERVICEHEALTH SCIENCES LIBRARY SYSTEMUNIVERSITY OF PITTSBURGH
Topics
HSLS Molecular Biology Information
Service
Library Licensed Bioinformatics Tools
Search Engine, InfoBoosters
& ReadingAssist
http://hsls.libguides.com/MBIS
Information Overload
285K • Breast Cancer
110K • Schizophrenia
11K • BRCA1
73 K • p53
1996 1997 1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 20130
1000
2000
3000
4000
5000
6000
7000
8000
9000
Growth of Molecular Databases and Tools
Year
# o
f papers
Information Overload
Molecular Biology Information Service
•1990-1996University of Nebraska-LincolnPhD. in BiochemistryProtein synthesis initiation in eukaryotic system
•1997-2001Vanderbilt University School of Medicine, NashvilleResearch FellowEpidermal Growth Factor (EGF) mediated signal transduction
•2001-2002Cellomics Inc., PittsburghKnowledge Engineer
•2002- 2006Information Specialist in Molecular Biology and GeneticsHSLS, University of Pittsburgh
Ansuman Chattopadhyay, Ph.D.ansuman@pitt.edu
•2006- PresentHead, Molecular Biology Information ServiceHSLS, University of Pittsburgh
Bioinformatics Service @ Health Sciences Libraries
1994 : University of Washington 2002: University of Pittsburgh
2006 …
University of Florida, Gainesville
Washington University, St. Louis
Northwestern University, Chicago
University of Southern California, LA
University of California, San Francisco
Harvard UniversityUniversity of Rochester……………………
Workshops
Web Dev
Software Licensing
Bioinformatics
Consultations
Molecular Biology Information Service
http://www.hsls.pitt.edu/molbio
4
In silico Support
LiteratureSearch
Sequence Analysis
Omics Data Analysis
Molecular Biology Information ServiceHSLS Licensed Bioinformatics
Software
Software Access
http://www.hsls.pitt.edu/molbio
ePath3D
ePath3D
ePath3D
Bioinformatics Workshops
CLCBio – RNA Seq .. October 7th, 2014CLCBio – Exome, Whole Genome Seq, October 8th,2014
UCSC Genome Browser Road Show .. December 4th ,5th , 2014
Life Sciences Search Engine
InfoBoosters
ReadingAssist
Web Development
Search Engine for Life Scientists
http://www.hsls.pitt.edu/molbio
Database Issue Web Server Issue Software and Database articles
Search Engine for Life Scientists
Databases/Tools : CRISPR
how is it calculate
d ?
workflow: copy, paste, and Google
what is its
function ?
what is its
structure?
Challenges for Biomedical Scientists
InfoBoosters
www.hsls.pitt.edu/infoboosters
InfoBoosters
InfoBoosters
Infoboosters
Infoboosters
InfoBoosters
How is it calculated ?
What is its
function ?
What is its
structure?
Data Integration
InfoBoosters
Create Your Own InfoBoosterWWW.hsls.pitt.edu/infoboosters
InfoBooster Generator
Clinical Trials.gov
InfoBooster GeneratorGo to the Clinical Trials.gov Website and do a search with a one-word search term, such as asthma
1
InfoBooster GeneratorCOPY the URL from the search result page
2
InfoBooster Generator
3
4
5
WWW.hsls.pitt.edu/molbio/infoboosters
InfoBooster Generator
InfoBooster Generator
ReadingAssist
ReadingAssist
ReadingAssist
Contact US
Thank You
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