Terpenes and Steroids Specific Natural Products Methods of Separation Method of Detection Chemical Synthesis Biosynthesis Advances in Natural Products Submitted in Partial Fulfillment for the Requirements in Chemistry 135 (Chemistry of Natural Products) Submitted to: Dr. Nelson Villarante Submitted by: Cua, Zabrina Tan Pilar, Ron Benedict Ortega Ronon, Mike Angel August 5, 2011
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Terpenes and Steroids
Specific Natural Products
Methods of Separation
Method of Detection
Chemical Synthesis
Biosynthesis
Advances in Natural Products
Submitted in Partial Fulfillment for the Requirements in Chemistry 135 (Chemistry of Natural Products)
Submitted to:
Dr. Nelson Villarante
Submitted by:
Cua, Zabrina Tan
Pilar, Ron Benedict Ortega
Ronon, Mike Angel
August 5, 2011
I. Introduction
Terpenes
Terpenes are hydrocarbons occurring widely in several organisms, like plants and animals.
Turpentine, the so-called "resin of pine trees", is derived from the Latin word, balsamum terebinthinae. It
is the viscous pleasantly smelling balsam which flows upon cutting or carving the bark and the new wood
of several pine tree species. In 1880, Friedrich Kekulé discovered that turpentine is composed of
hydrocarbons, with the molecular formula of C10H16, and consequently he named these structures,
―terpenes‖. Terpenes with oxygen in the form of aldehydes, ketones, or alcohols, having the molecular
formula of C10H16O and C10H18O were assigned the name, ―camphor‖. Camphor has been known since
antiquity in the Orient, and at least the 11th century in Europe. It was said that the Arabs were responsible
of bringing it to Europe from the East. The term ―camphor‖ is then changed to ―terpenoids‖. (Stevens &
Verhé, 2004)
Otto Wallach, an assistant of Kekulé, after the analysis of several components of essential oils,
discovered that many contained 5n carbon atoms. Thus, in the year 1887, he proposed his isoprene rule,
stating that the structure of terpenes were composed of isoprene units, 2-methylbuta-1,3-diene. Thus
terpenes are also called isoprenoids. After thirty years, Sir Robert Robinson perfected Wallach‘s isoprene
rule, and stated that the joining of two isoprene units must be of head to tail fashion. But this rule can only
be used as guiding principle and not as a fixed rule. For example carotenoids are joined tail to tail at their
center.
Figure 1. Carbon skeleton of two Isoprene units with a bond between the tail of one and the head of another
In the case of cyclic compounds, the linkage of the head of one isoprene unit to the tail of another
is followed by an additional linkage to form the ring. The second linkage is not necessarily head-to-tail,
but whatever is necessary to form a stable five- or six-membered ring. A few years later, Leopold Ruzicka
proposed the rule of Ruzicka, classifying terpenes according to their number of isoprene units (Table 1)
and specifying that terpenes are derived from aliphatic precursors, namely geraniol, geranylgeraniol,
squalene, and farnesol, for monoterpenes, diterpenes, triterpenes, and sesquiterpenes, respectively.
(Berger, 2007)
Table 1. Isoprene Rule
Number of carbon atoms
Value of n Class
10 2 Monoterpenes(C10
H16
)
15 3 Sesquiterpenes(C15
H24
)
20 4 Diterpenes(C20
H32
)
25 5 Sesterpenes(C25
H40
)
30 6 Triterpenes(C30
H48
)
40 8 Tetraterpenes(C40
H64
)
>40 >8 Polyterpenes(C5H
8)n
After classification by the number of isoprene units, further classification can be done by the
number of rings present in the structure. Acyclic terpenes contain no ring but instead are open structures.
Monocyclic, bicyclic, tricyclic, and tetracyclic terpenes contain one, two, three, and four rings in the
structure, respectively.
Figure 2. Parent Hydrocarbon of Terpenes (Isoprenoids)
Terpenes are extracted or steam distilled, and these extracts or distillates are known as ethereal
or essential oils (―essence absolue‖). These essential oils are used widely as natural flavour additives,
fragrances, and traditional and alternative medicines, like aromatheraphy. Synthetic variations and
derivatives of these have expanded the diversity of aromas and flavours for fragrances and food additives,
respectively. The biological and ecochemical function of terpenes is not fully known, but many plants are
observed to produce volatile terpenes to either attract specific insects for pollination or to expel certain
animals or predators. Less volatile but strongly bitter-tasting or toxic terpenes also protect some plants
from being eaten by animals (antifeedants). (Breitmaier, 2006)
Many insects metabolize and synthesize these plant compounds to produce growth hormones
and pheromones. Pheromones are luring and signal compounds (sociohormones) that insects and other
organisms excrete in order to communicate with others like them, e.g. to warn (alarm pheromones), to
mark food resources and their location (trace pheromones), as well of assembly places (aggregation
pheromones) and to attract sexual partners for copulation (sexual pheromones). Harmless to the
environment, pheromones may replace conventional insecticides to trap harmful and damaging insects
such as bark beetles. (Breitmaier, 2006)
More than 30,000 terpenes have been isolated from plants, animals, and microorganisms.
(Berger, 2007) Some common examples of monoterpenes are citral, limonene, menthol, terpineol, α-
pinene, and, camphor. Citral is a constituent of lemon oil and is commercially obtained from lemon grass
oil. Limonene on the other hand is found in the skin of citrus fruits. Menthol is found in the essential oil of
the field mint, Mentha arvensis, and possesses useful physiological characteristics that include
anaesthetic and refreshing effects. Menthol is used to flavour sweets, tobacco, and toothpaste. Terpineol
and α-pinene were isolated from pine oil (turpentine), while camphor from camphor tree, Cinammomum
camphora. Camphor is now commercially made from α-pinene and is used to protect clothes from moths.
Figure 3. Structures of Citral, Limonene, Menthol, Terpineol, α-pinene, and Camphor. (Left to Right)
Sesquiterpenes are found in higher boiling portions of essential oils, when compared to
monoterpenes. Sesquiterpenoid lactones are commonly found in the Compositae family as biologically
active constituents. Santonin from wormwood, Artemisia maritime, was used as a medicine to eliminate
intestinal wounds, while a derivative of artemisinin, from Artemisia annua, is used to treat resistance
strains of malaria. Another example of a sesquiterpene is the plant hormone, abscisic acid, which
stimulates leaf fall and dormancy in plants.
Figure 4. Structures of Santonin, Artemisinin, and Abscisic acid. (Left to Right)
The most common examples for diterpenes, triterpenes, and tetraterpenes, are vitamin A,
squalene, and β-carotene and lycopene, respectively. Both vitamin A and β-carotene are involved in the
chemistry of vision, since β-carotene is converted to vitamin A. Vitamin A is also known as retinol.
Lycopene is the compound responsible for the red coloring of tomatoes and watermelon. Squalene on the
other hand is a precursor of steroid molecules, first isolated from fish liver oils, and then in plant oil and
mammalian fats. Lanosterol is a common tetracyclic triterpene and is a major constituent of wool fat.
(Erdman & Sandor, 1997)
Figure 5. Structure of Retinol.
Figure 6. Structure of Squalene.
Figure 7. Structure of Lycopene.
Figure 8. Structure of B-Carotene.
Steroids
Hormones are chemical messengers- organic compounds synthesized in glands and delivered by
the bloodstream to certain tissues in order to stimulate or inhibit a desired process. Steroids are a type of
hormone, and derived from tetracyclic triterpenes and possess a cyclopentaperhydrophanthrene
backbone. They are recognized by their tetracyclic skeleton which consists of three fused six-membered
and one five-membered ring, as seen in Figure 9. Rings can either be trans fused or cis fused, and the
former is said to be more stable, and thus B,C,D rings of the carbon skeleton of steroids are trans fused.
While most naturally occurring steroids have the A,B rings trans fused as well.
Figure 9. Carbon Skeleton of Steroids
Many steroids have methyl groups at the 10- and 13- positions and are called angular methyl
groups, and these are shown to be above the plane of the steroid ring system when drawn. Substituents
on the same side of the steroid ring system as the angular methyl groups are designated as β-
substituents, which are indicated by a solid wedge, while those on the opposite side as α-substituents,
indicated by a hatched wedge.
The history of steroids can be traced back as far as antiquity. Adolf Butenandt isolated estrogen,
progesterone, and testosterone, in the year 1929, 1934, and 1935, respectively (Vasudevan, Sreekumari,
& Vaidyanathan, 2011). While in the year 1934, Ruzicka and his colleagues further developed
androsterone when he purified cholesterol. But the most significant event occurred during the year 1935,
when Karoly Gyula David et. al., purified the testicular hormone, which was later referred to as
testosterone, for the first time from bull testes. (2008 September « History of steroids)
Steroids are non-polar compounds thus are classified as lipids. The non-polarity of steroids
allows them to cross cell membranes, so they can leave the cells in which they are synthesized and enter
their target cells. Sterols are steroids with a hydroxyl group at C-3. Cholesterol is the most common and
most abundant steroid as well as sterol encountered by animals. It is also the precursor of all other
steroids. It is an important component of cell membranes. (Bruice, 1994)
Figure 10. Structure of Cholesterol.
Cholesterol is biosynthesized from squalene and its structure makes it more rigid than other
membrane lipids. Due to the eight asymmetric carbons, 256 stereoisomers are possible but only one
exists in nature (Figure 10). It is also a precursor of bile acids. In fact, the word cholesterol is derived from
the Greek words chole meaning ―bile‖ and stereos meaning ―solid.‖ The bile acids-cholic acid and
chenodeoxycholic acid—are synthesized in the liver, stored in the gallbladder, and secreted into the small
intestine, where they act as emulsifying agents so that fats and oils can be digested by water-soluble
digestive enzymes. Cholesterol is also the precursor of vitamin D.
Figure 11. Structure of Cholic acid (left) and Chenodeoxycholic acid (right).
Steroid hormones are divided into five classes: glucocorticoids, mineralocorticoids, androgens,
estrogens, and progestogens. Glucocorticoids and mineralocorticoids are known to be adrenal cortical
steroids due to it being synthesized in the adenal cortex. All adrenal cortical steroids contain an oxygen
on the carbon at position eleven. Glucocorticoids are involved in glucose metabolism as well as protein
and fatty acid metabolism, and an example is cortisone, which is used to treat arthritis and other
inflammatory conditions. Mineralcorticoids on the other hand cause an increased reabsorption of Na+, Cl
-,
and HCO3- by the kidneys, which leads to an increase in the blood pressure. Aldosterone is an example
of a mineralcorticoid.
Figure 12. Structure of Cortisone (left) and Aldosterone (right).
Androgens are male sex hormones, secreted by the testes, and are responsible for the
development of male secondary sex characteristics during puberty and promote muscle growth.
Testosterone and 5α-dihydrotestosterone are androgens. Estradiol and estrone, on the other hand, are
female sex hormones known as estrogens. They are secreted by the ovaries and are responsible for the
development of female secondary sex characteristics as well as regulation of the menstrual cycle.
Progesterone, a progestogen, is the hormone that prepares the lining of the uterus for implantation of an
ovum and is essential for the maintenance of pregnancy. It also prevents ovulation during pregnancy.
Modified estrogens and progesterons are currently used as oral contraceptives. (Hanson, 2003) One
example of which is Norethindrone, a synthetic steroid. (Ch26: Steroids)
Figure 13. Structure of Testosterone (left) and 5α-dihydrotestosterone (right).
Figure 14. Structure of Estradiol, Estrone, and Progesterone. (Left to Right)
Figure 15. Structure of Norethindrone.
Although the various steroid hormones have remarkably different physiological effects, their
structures are quite similar. For example, the only difference between testosterone and progesterone is
the substituent at C-17, and the only difference between 5α-dihydrotestosterone and estradiol is one
carbon and six hydrogens, but these compounds provides the barrier between being male and being
female. These examples show the extreme specificity of biochemical reactions. (Bruice, 1994)
Steroids can also be classified by their source. Phytosterols are sterols obtained from plants,
while zoosterols from animals. Ergosterols are from yeasts, fungi, algae, and protozoans. Ecdysteroids
are steroids obtained from insects.
II. Methodology
Extraction of Terpenes Tapping. Tapping is the deliberate damage and subsequent collection of the resin. This method
is used to collect latex for rubber production and for gum turpentine. Expression. Expression is the process of oil extraction through the use of physical pressure and
the product is called expressed oil. For example by squeezing a piece of orange peel, you will see the oil
bearing glands burst and eject a fine spray of orange oil. Many commercially available citrus oils, bergamot in particular, are prepared in this way.
Distillation. Distillation of terpenes from their natural sources can be done in three ways: dry or empyrumatic distillation, steam distillation or hydrodiffusion. Dry distillation involves high temperatures since heat, usually direct flame, is applied to the surface of the vessel containing the plant material. This technique is reserved for the highest boiling of the oils, typically those derived from wood, because the high temperatures are necessary to vaporize their chemical components. In steam distillation, water or steam is added to the still pot and the oils are co-distilled with the steam. The presence of water in the pot during steam distillation limits the temperature of the process to 100 "C. Thus much less degradation occurs in this process than in dry distillation. However, some degradation does occur, like in the case of tertiary alcohols, particularly the higher boiling sesquiterpenoid and diterpenoid alcohols. These are often dehydrated in the pot and distilled. The steam distilled oil is separated from the water by means of a Florentine flask which separates them based on their differing densities. The aqueous distillate is sometimes referred to as the waters of cohobation.
Hydrodiffusion. Hydrodiffusion is essentially a form of steam distillation. However, it is carried out upside down since the steam is introduced at the top of the pot and the water and oil are taken off as liquids at the bottom. The plant materials diffuse through the cell membranes into the steam and are carried to the bottom of the still by the descending flow of condensate. This technique therefore saves energy because it is not necessary to vaporize the oil. Terpenes can also be extracted using solvent extraction. There are many forms of solvent extraction; the following are examples of procedures used in extracting terpenes:
1. Ethanolic extraction is seldom used for plant materials because of the high proportion of water compared to oil in the plant..
2. Enfleurage was used by ancient Egyptians to extract perfume ingredients from plant material and
exudates. In enfleurage, the purified fat absorbs the oil through intimate physical contact. For flowers, for example, the petals were pressed into a thin bed of fat. The perfume oils diffuse into the fat over time and then the fat can be melted and the whole mixture filtered to remove solid matter. On cooling, the fat forms a pomade. Nowadays odorous oil is extracted using ethanol, but during ancient times the pomade was used directly. The odorous oils are soluble in alcohol because of their degree of oxygenation. The fat used in the extraction and any fats and waxes extracted from the plant along with the oil, are insoluble in ethanol and so are separated from the oil. Removal of the ethanol by distillation produces what is known as an absolute.
3. The most important extraction technique for terpenes would be simple solvent extraction.
Traditionally benzene was used as the solvent but it has been replaced with the use of other solvents because of possible toxic effects. Petroleum ether, acetone, hexane and ethyl acetate, together with various combinations of these, are typical solvents for extraction. Recently, there has been a great deal of interest in the use of liquid carbon dioxide as an extraction solvent. The pressure required to liquefy carbon dioxide at ambient temperature is considerable and thus the necessary equipment is expensive. This is reflected in the cost of the oils produced; however, carbon dioxide has the advantage that it is easily removed and there are no concerns about residual solvent levels. The product of such extractions is called a concrete or resinoid. It can be extracted with ethanol to yield an absolute or distilled to give an essential oil
Figure 16. Simple Schematic for Solvent Extraction
Extraction of Steroids
Solvent Extraction. When deciding upon the best solvent for such extractions, consideration must be given to the polarity of the steroid of interest and the interaction of the steroid to binding proteins. The extraction solvent must ideally do two things; it must totally disrupt the binding of the steroid to protein and must extract the steroid of interest quantitatively and leave behind in the aqueous medium other steroids and non-specific interfering substances. In practice, of course, this is never possible and by its very nature such solvent extraction will also extract a number of other steroids of similar polarity and thus similar structure to the analyte which may well interfere in the final quantization. Depending upon the relative concentration of the steroid analyte in comparison to that of the potentially interfering steroids, it may be necessary to interpolate further purification steps prior to quantization. For steroids which are incorporated into the lipoproteins, such as cholesterol and vitamin D, it may be necessary to add chemicals to disrupt the lipoprotein structure prior to extraction since without this disruption the recovery of steroid analyte may be very low. When discussing the extraction of steroids, it must be remembered that many steroids often bind very tightly to glass and it is therefore advisable to silanise all glassware prior to use by treatment with dimethyldichlorosilane (1% v/v in toluene) or similar reagent washing afterwards with methanol. It is probably obvious, but still needs emphasising that solvent extraction generally precludes the use of plastic, silicone grease, etc. Considerable care must be taken to exclude all plastic since the occurrence of plasticisers (phthalates) in extracts may interfere in the final analysis.
Figure 17. Suitable Solvent for Steroids
Solid Phase Extraction. There are a wide variety of solid-phase materials available for use in the extraction of steroids. SPE material appears to fall into two distinct groups. Firstly, those systems based on Keiselguhr (Celite – a diatomaceous earth) treated in various and sometimes unspecified ways to inactivate the material and then sieved into different size ranges. The material is then packed into syringes, cartridges, etc. of various sizes and shapes made from a variety of different plastics. The aqueous medium is poured onto the material, which takes up the water, and the steroids are then eluted with organic solvents. This process would appear to be a simple liquid– liquid partition chromatography process similar to the celite partition column chromatography of the past. Since these columns have a finite capacity to absorb water, it is possible inadvertently to overload and if aqueous material passes through the column, steroids of interest will also pass through still dissolved in the aqueous matrix. Tox Elut (Varian), a similar type of system but using a more granular material designed for the analysis of drugs of abuse has a dye incorporated into it, which indicates how far down the column the added aqueous medium has reached. Such systems are still occasionally used for preliminary purification before quantization.
The second type of SPE material is based upon microparticulate silica either used directly or modified in an ever increasing variety of different ways. Some of the non-polar, polar and ion-exchange sorbents, which are in use today and can be obtained from a variety of sources are examples. These sorbents can be packed into syringe-like reservoirs or pre-packed cartridges of different sizes, which can cope with differing loads. These SPE systems are based on a variety of absorption and partition.
Immunoaffinity Extraction. In an ideal world, the initial extraction procedure would not be necessary as the quantization method would be so specific that neither the biological matrix nor steroids with similar structures to that of the analyte would interfere. Unfortunately, although some direct immunoassays are described, there are very few of these analytical methods for steroids which cannot be improved by some form of extraction and/or pre-purification before quantization. Extraction procedures, which removed only the steroid of interest from the matrix, would be of considerable value in some circumstances and one extraction method has shown considerable promise in this area. Use of columns packed with immobilised antibodies (immunoaffinity columns - IAC) for extraction can provide a means of selective extraction and purification. The selectivity depends of course upon the specificity of the antibody for the analyte. In these methods, the antibody is chemically attached to a support and kits are available to carry out this procedure. The immobilised antibody is then packed into a column and the matrix percolated through it. After washing, the analyte can be released from the antibody and thus eluted from
the column by altering the salt concentration. Highly specific antibodies obviously provide a selective extraction but there may be situations when a less selective, broad spectrum extraction is required. This can be achieved by using an antibody with broader specificity.
Molecularly Imprinted Polymers and Restricted Access Material.New forms of selective
extraction have been introduced but not yet widely applied to steroid analysis. Molecularly imprinted polymers, which could be regarded as synthetic ‗antibodies‘ are one. While another development uses the so-called restricted access material (RAM) coupled on-line to LC-MS or by the use of column switching – after absorption onto a C4-alkyl-diol silica RAM. The absorbed steroid was backflushed onto a conventional C18 column followed by ES-MS. Isolation and Detection of Sample
TLC Chromatography. The adsorptive material is coated onto a plate for thin-layer chromatography (TLC). Thin-layer plates can be either prepared in the laboratory or alternatively bought from a number of suppliers. While original TLC was carried out using glass plates, today the support is usually coated onto aluminum foil, which has the advantage that it is light, unaffected by solvents used for elution and areas of interest can be removed by cutting with scissors rather than the alternative procedure of scraping off the adsorbent material. TLC of steroids is still widely carried out and the adsorptive material used is usually silica gel although aluminum oxide has been used for the separation of C19 androgens. TLC has the advantage that a large number of samples can be processed in a single chromatographic run. The difficulty with TLC is the need to identify the areas on the plate which correspond to the steroid of interest. Steroids which are ultraviolet (UV) absorbing (e.g., delta-4-3-ones absorb at 240 nm) can be visualized with the use of UV light and adsorptive material is available which contains a fluorescent compound which enhances the UV absorbance of the steroid of interest. Steroids which do not absorb in the UV may have to be visualized by spraying part of the plate to identify the position of standards which have been run together with the samples of interest. There are a wide variety of methods of visualizing steroids on TLC plates usually involving spraying and/or heating with a variety of reagents which may or may not be specific for particular types of steroids. If standards have not been run, a narrow side strip of the TLC plate can be removed and the steroids located.
Gas-Liquid Chromatography. Gas–liquid chromatography (GLC or GC) is a partition system where the steroid solute is in the vapor phase. Because of the relatively high molecular weight of steroids and their derivatives, GLC has to be carried out at high temperatures, usually in excess of 200°C. The vaporized steroid, once introduced into the GLC column, is carried through the system by a gas, usually helium, because it is less dense than nitrogen, gives improved separation but is of course much more expensive to buy. Better separation can be achieved with hydrogen but there are safety issues to be considered. For many years, the separation procedure with the greatest resolving power was gas chromatography, originally carried out using packed columns but today capillary columns of glass or fused silica are more popular.
High Pressure Liquid Chromatography. I. High temperatures are not required. II. Choice of stationary and mobile phases for optimal separation. III. Material can be recovered from the column eluates for further analytical procedures. IV. The resolution achieved by HPLC is superior to TLC and paper chromatography, V. HPLC offers the potential and versatility for separation of intact conjugates. VI. Although most steroid metabolites are virtually without ultraviolet absorption, which is the
most useful of current detectors, some further metabolites of steroids can be detected with a refractive index or an electrochemical detector or by the use of pre- or post-column reaction with compounds which cause enhanced UV absorbance, fluorescence etc.
VII. Methods of linking HPLC to mass spectrometers have greatly improved, allowing the routine use of LC-MS and LC-MS-MS
Mass Spectroscopy. For steroid analysis a number of different types of ionization methods are used to generate gas-phase ions and include; electron ionization (EI), chemical ionization (CI), electrospray (ES), atmospheric pressure chemical ionization (APCI), atmospheric pressure photoionization (APPI), and the recently introduced, desorption electrospray ionization (DESI) technique. The selection of the appropriate ionization mode is one of the key decisions for the analyst to make, and thus we discuss the most important ionization modes in some detail below. Enormous technological progress, in both instruments and computers, now enables spectroscopists to interpret mass spectra directly without the need to speculate. Exact mass measurements made at high resolution on all fragments provide information about their elemental composition, and tandem mass spectrometry (MS/MS) techniques make it possible to follow the fate of each fragment. Thus, the structure of unknown compounds can now often be found merely by using mass spectrometry. It will become evident that vacuum ionization techniques i.e. EI, are most useful for volatile compounds; while atmospheric ionization methods such as ES and APCI are more suitable for less volatile compounds. Mass spectroscopy can be done in concert with either gas chromatography or liquid chromatography or mass spectroscopy also.
Colorimetric Tests Bromine Water Test. Bromine will add to the carbon-carbon double bond of alkenes to produce
dibromoalkanes and with alkynes to produce tetrabromoalkanes. When this reaction occurs, molecular
bromine is consumed, and its characteristic dark red‑brown color disappears if bromine is not added in
excess. The rapid disappearance of the bromine color is a positive test for unsaturation. The test is not
unequivocal, however, because some alkenes do not react with bromine, and some react very slowly. In
the case of a negative test, therefore, the potassium permanganate test should be performed.
Lieberman-Burchard Test. The Lieberman–Burchard or acetic anhydride test is used for the
detection of cholesterol. The formation of a green or green-blue color after a few minutes is a positive
result. Lieberman–Burchard test is a colorimetric test to detect cholesterol, which gives a deep green
color. This color begins as a purplish, pink color and progresses through to a light green then very dark
green color. The color is due to the hydroxyl group (-OH) of cholesterol reacting with the reagents and
increasing the conjugation of the un-saturation in the adjacent fused ring. Since this test uses acetic
anhydride and sulfuric acid as reagents, caution must be exercised so as not to receive severe burns.
Lifschutz Test. The sterol is combined with perbenzoic acid and heated in glacial acetic acid;
sulfuric acid is then added. A bluish green color means a positive result. Alternative method uses
FeCl3∙6H2O with glacial acetic acid and concentrated sulfuric acid. Same bluish green color is observed.
Phosphomolybdic Acid Test. Phosphomolybdic acid, also known as dodeca
molybdophosphoric acid or PMA is a component of Masson's trichrome stain. It is a yellow-green
compound, freely soluble in water and polar organic solvents such as ethanol. It is used as a reagent in
thin layer chromatography for staining phenolics, hydrocarbon waxes, alkaloids and steroids. Conjugated,
unsaturated compounds reduce PMA to molybdenum blue. The color intensifies with increasing number
of double bonds in the molecule being stained.
Potassium Permanganate (Baeyer Test). The Baeyer test, depends on the ability of potassium
permanganate to oxidize the carbon‑carbon double bond to give alkanediols or the carbon-carbon triple
bond to give carboxylic acids. The permanganate is destroyed in the reaction, and a brown precipitate of
MnO2 is produced. The disappearance of the characteristic color of the permanganate ion is a positive
test for unsaturation. However, care must be taken, since compounds containing certain other types of
functional groups (for example, aldehydes, containing the --CH=O group) also decolorize permanganate
ion.
Rosenheim Test. A chloroform solution of sterol with 90% tricholoracetic acid which gives a blue
or pink color.
Salkowski Reaction. Cholesterol is oxidized in the presence of an excess amount of phosphoric
acid and ferric ions (FeCl3) to give a reddish purple color whose absorbance is measured at 560 nm.
Other Salkowski reaction uses cholesterol dissolved in chloroform and mixed with sulfuric acid. A two-
phase system forms where the upper layer is red and the lower layer is green.
Zlatkis Test. A solution of cholesterol is added to a solution of ferric chloride in concentrated
sulfuric acid and glacial acetic acid to give a purple color. This test is used to detect cholesterol in plasma.
III. Elucidation of Structure
Terpene Structure Elucidation
In exceptional cases, terpenes crystallize after chromatographic purification, thus enabling
determination of their three-dimensional structure in the solid state by X-ray crystallography. For the most
part, an amorphous or oily material rather than a single crystal is obtained after chromatographic
separation, and high-resolution NMR has been identified as the most efficient method to elucidate the
three-dimensional structure of molecules in solution, requiring sample quantities of less than one mg.
Other spectroscopic methods such as UV- and visible light absorption- and IR spectroscopy
predominantly permit the identification of known terpenes, e.g., by computer-assisted spectral
comparison on the basis of digitized spectroscopic data files or spectra catalogues. In the case of
unknown terpenes, chromophores such as carbonyl groups and their structural environment can be
detected by UV spectroscopy. Nearly all functional groups of a terpene are identified in the IR spectrum
by means of characteristic vibration frequencies; OH single bonds, for example, vibrate with 3600 cm-1
,
carbonyl double bonds with 1700 cm-1, and carbon-oxygen single bonds with 1200 cm
-1 detected as
absorption bands in the IR spectra. Mass spectrometry (MS) detects the molecular mass of a compound
with a precision of 10-4 mass units. Owing to the isotope mass defect of elements the molecular formula
of a terpene can be determined by high-resolution mass spectrometry of the molecular ion. For example,
the molecular formula C17H22O4 of acanthifolin from Senecio acanthifolius (Asteraceae) is calculated from
the molecular mass of 290.1525 determined by high-resolution mass spectrometry of the molecular ion.
Additionally, partial structures of molecules can be derived from the masses of the ions arising from
fragmentation of the molecular ion and detected in the mass spectrum.
Steroid Structure Elucidation
Infrared. The several tables show the different important wavenumbers and their corresponding
responsible groups.
NMR. NMR spectra of steroids are usually measured in CDCl3. Dispersion of signals can be to a
certain extent influenced by a change of solvent (mainly benzene or pyridine). Even small induced shifts
can in some cases significantly simplify the analysis of spectra and enable the extraction of J(H,H) values
in the region of strongly overlapping signals. The shifts induced with aromatic solvent (ASIS) are largest
in steroids containing polar substituents and for protons in their neighbourhood. Much larger shifts can be
induced by lanthanide shift reagents (LSR). Paramagnetic lanthanide ion brings about dramatic changes
in chemical shifts of nuclei in the substrate molecule. The size of lanthanide induced shifts (LIS) depends
on the ratio of LSR and substrate. The relative LIS values for individual protons depend on the distance
and orientation of a given proton and the lanthanide in the dynamic complex of LSR with a steroid. The
disadvantage of LSR application is the line-broadening of the proton signal that increases with the
LSR/substrate ratio and also with the increasing magnetic field of the spectrometer.
In 1D proton NMR spectra of steroids overlapping signals of CH2 and CH groups appear as a
characteristic hump in the region 0.5–2.5 ppm that is difficult to analyze. Most of the structure information
from low-frequency (<200 MHz) 1H NMR data was therefore traditionally obtained from easily visible
strong signals of methyl groups and from rare signals of protons shifted from the steroid hump either by
hybridization (olefinic protons) or by substituent effects (mainly CH–O protons). The much larger range of
carbon-13 chemical shifts eliminates this problem with resolution of signals in 13
C NMR spectra of steroids.
X-Ray Crystallography. This determines the arrangement of atoms within a crystal and provides
information about: 1) 3D picture of the density of electrons within a crystal, 2) mean positions and sizes of
the atoms in the crystal, 3) lengths, angles, and types of chemical bonds and 4) chemical functions,