static-content.springer.com10.1007... · Web viewUR42 CATGATTTCAAACACTGCAAATAAA 0.00 176.48 8.46 Acyl-CoA dehydrogenase family member 10-like Acyl-CoA dehydrogenase G. max BLASTP

Supplementary Table 4. Overrepresented deepSuperSAGE tags (UR) from pea ZP0104 leaves infected with Pseudomonas syringae pv. pisi race 2 (strain P134- resistant response).

TAG Sequence Normalized TAG copy

number control

Normalized TAG copy

number

Fold change1

Identification Species2 Gene identification number

UR1 CATGGAAAAAAAAAAAAAAAAAAAA 0.00 1309.44 11.35

UR2 CATGTGTGATATATATGTAAACCTA 0.00 871.69 10.77 Pathogenesis-related protein 5 (PR5)Thaumatin-like protein 1a-like

Vicia fabaG. max

332437276377676540380005617356533313

UR3 CATGAATGTCAATGTGTATAGTGTA 0.00 742.58 10.54 Vacuolar-processing enzyme Pectidase C13 Superfamily

V. sativaM. truncatulaBLASTP

332432300377674792510357357437512356564076

UR4 CATGCATTTATAGCAACTACCGCTGSee tag DR36

0.00 676.11 10.40 Disease resistance response protein 39 (DRR230-b) Defensin-like protein(Gamma-thionine)

V. faba 16907522208744206586423205277589

UR5 CATGCCTATTACAGTCATCAGATGA 0.00 381.98 9.58 Heavy metal transport/detoxification superfamily protein M.truncatulaBLASTP

332486696377675905357443826

UR6 CATGTCACTTCATATCAATGTCAAA 0.00 369.76 9.53 S-adenosylmethionine synthase mRNA 609222609556332429911

UR7 CATGTACTATCGTTCAGTGCTAATA 0.00 365.18 9.51 Purple acid phosphatase-like protein M. truncatula 332445315377672875357478298

UR8 CATGAATGAATAATGTTCGGTGTTASee tags UR133, UR241 and UR250

0.00 316.28 9.31 Putative glycine rich protein precursor (grp1 gene) 114415397

UR9 CATGGGTTCTAAATCTCAAGCAAAA 0.00 299.48 9.23 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein M. truncatulaG. max

377672394332445170356501790

UR10 CATGAATAAATAAATGACACCAGAA 0.00 298.71 9.22 CAP, cysteine-rich secretory protein, antigen 5 (Pr1)Pathogenesis-related protein 1a Basic form of pathogenesis-related protein 1-like

M. truncatulaG. max

3254262532542614325425673254258332542608357446160356554879

UR11 CATGGAAAACTGAAGAACAACATCA 0.00 281.14 9.14 Hypothetical protein Uncharacterized proteinPlant AT-rich sequence and zinc-binding proteins (PLATZ)

M. truncatulaG. maxBLASTP

32544903222359512325449083254498390646358356498155

UR12 CATGGATAGTATAATATTATACAAA 0.00 276.56 9.11 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase M. truncatula 332433887261231664357453896

UR13 CATGTACGAAAACTTGAAAAGAAAA 0.00 275.03 9.10 Sedoheptulose-1 7-bisphosphatase M. truncatula 377672899357461142

UR14 CATGATAGTTGAAAGGCTTGGTGAT 0.00 274.26 9.10 Unknown mRNAProfilin

M. truncatulaBLASTP

332498893261231584217071213

UR15 CATGGAATTGAGTTGGAAAAAGTCA 0.00 268.92 9.07 Heavy metal transport/detoxification superfamily proteinUncharacterized proteinPutative late blight resistance protein homolog R1B-19

M. truncatulaG. maxV. viníferaBLASTP

332478306388512832356527651225454287

UR16 CATGCTATTAGACTTTCAGCTAAAA 0.00 261.28 9.03

UR17 CATGCAGGGTGTTTGTTTATCAAAA 0.00 255.93 9.00 Protease (elsa gene)Cysteine-protease

332445983144223301134881

UR18 CATGCTTATTATAATCATCAGATGA 0.00 255.93 9.00 Heavy metal transport/detoxification superfamily proteinUncharacterizedHeavy-metal-associated domain protein


33249235532542590388499379351726611

UR19 CATGGATCATAAACCAAATTAAATT 0.00 255.93 9.00 Putative cysteine protease NTH1 3776756793324317381174170

UR20 CATGTGATATAGAAAAGGAAAATGA 0.00 248.29 8.96

UR21 CATGTAATGTAACTTCTGCCTAAGA 0.00 237.59 8.89 NAC family transcription factor 6 (NAC6) gene??NAC transcription factor-like protein??

Cicer arietinumM. truncatula

332448322242877184357474004

UR22 CATGTTGCTATTTATATAATGAGTT 0.00 237.59 8.89 Endo-beta-1 3-glucanase (PR-2 proteins) M. truncatula 222358586377680144357474068

UR23 CATGCAAAAGGTTATATGATAAAAA 0.00 236.83 8.89 RING finger and CHY zinc finger domain-containing proteinRING finger and CHY zinc finger domain-containing protein 1-like

M. truncatula G. max

332431897356563812358345672

UR24 CATGCGTTTATTATATATTTAATAA 0.00 226.90 8.83

UR25 CATGGCGTAGCAAATACGGTTGGAC 0.00 225.37 8.82 Pre-hevein-like protein (PHLP) (chitin-binding proteins) 7381204332435051

UR26 CATGGCCACTTTTTGCTGAACAACA 0.00 223.08 8.80 UDP-glucuronosyltransferase 1-6 M. truncatula 332454848332438551357494120

UR27 CATGAGTTTAACAAAAAAAAAAAAA 0.00 217.73 8.77

UR28 CATGTATTATTTGTCTTAAAAAAAG 0.00 214.67 8.75

UR29 CATGTTAACTTTGTTGGTGTTGAAA 0.00 209.33 8.71 TIR-similar-domain-containing protein 33246525720339359377681884

UR30 CATGTAATGTGTAACTATAAATAAA 0.00 207.80 8.70 Calcium-dependent protein kinase (CDPK1)?? M. truncatula 33247400837768311860265084

UR31 CATGCCTATTACAGTCATCAGATAA 0.00 200.16 8.65 Hypothetical proteinHeavy-metal-associated domain protein

M. truncatulaBLASTP

33248669632542689377675905357443826

UR32 CATGCATCAATCAATATGTTAAAAA 0.00 197.10 8.62 Photosystem II 10 kDa polypeptide?? M. truncatula 332445519377671119357451408

UR33 CATGTTATGATCACTTTGGGTGAGA 0.00 197.10 8.62 Calmodulin-like protein 332499651332436746535427

UR34 CATGGGGCCTCAAATGGCCTCTATT 0.00 196.34 8.62 HRGP-3 for hydroxyproline-rich glycoprotein-3?? 33243166037051102

UR35 CATGATAATTATAATCAAGCTCAGA 0.00 194.81 8.61 Abscisic stress-ripening protein 1-like G. max 332431573377672873210142728356559644

UR36 CATGCTATAGCGCTACAATTCAAAT 0.00 187.17 8.55 Unknown mRNAPirophosphatase

M. truncatulaBLASTP

377683969332432978388506983

UR37 CATGGGCTATACATACATATATCTC 0.00 181.82 8.51

UR38 CATGAACTCGTTTCGCCAATATAAG 0.00 181.06 8.50

UR39 CATGTTTCCTTTGAAAAAAAAAAAA 0.00 181.06 8.50

UR40 CATGTATCCCTCTCCTTCAATAAAT 0.00 179.53 8.49

UR41 CATGAAGGTTAAGGGTAATGTGTTC 0.00 176.48 8.46 Unknown mRNARibosomal L19e Superfamily

M. truncatulaBLASTP

332461635332444930377671098217071449

UR42 CATGATTTCAAACACTGCAAATAAA 0.00 176.48 8.46 Acyl-CoA dehydrogenase family member 10-likeAcyl-CoA dehydrogenase

G. maxBLASTP

332439773377674698356529377

UR43 CATGATTGTTAAGAAAAAAAAAAAA 0.00 171.89 8.43

UR44 CATGAACGAATAATGCCTTGTTCTA 0.00 169.60 8.41 15-hydroxyprostaglandin dehydrogenase M. truncatula 332432038377674259357475428

UR45 CATGCTCGCTCGCAGCGGCAACAAC 0.00 165.02 8.37 TFIIIA (or kruppel)-like zinc finger protein (zpt2-1 gene) M. sativa 3324333003776751817228328

UR46 CATGAATCAAAAATTGAGATGAAAT 0.00 164.25 8.36 Fumarylacetoacetase M. truncatula 377680779332432934357447870

UR47 CATGTGTTTTCAGAAAAAAAAAAAA 0.00 164.25 8.36

UR48 CATGCAAGTGTAATATAAATACTGT 0.00 159.67 8.32 Protein phosphatase 2C-like proteinSerine/threonine phosphatases, family 2C,

M. truncatula G. maxBLASTP

377675176332433330356549704

UR49 CATGATGCTATTGTTATGAGCCTAA 0.00 158.14 8.31 Unknown mRNAChaperonin 10 Kd subunit (cpn10 or GroES)

M. truncatulaBLASTP

377674447332445015388494687

UR50 CATGTATGAATGATTAATAAATCAASee tag UR239

0.00 158.14 8.31 Phloem specific proteinPhloem specific proteinPhloem specific protein

V. fabaM. truncatula

125380243332445206377671856357461804

UR51 CATGCTGAATTTCAAGAAAATAAAA 0.00 155.85 8.28

UR52 CATGTTATAGTTTGTTTTTCTTTAA 0.00 155.09 8.28 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like G. max 332433849356545300

UR53 CATGTCTGAATGGAAAAGAGAGAAA 0.00 153.56 8.26

UR54 CATGTAATAATAACGGGACCTTTCA 0.00 152.03 8.25 Chitinase M. truncatula 332445362377672210357443752

UR55 CATGCATCAATCAATAAAAAAAAAA 0.00 150.50 8.23

UR56 CATGATTTAACTGTGTATGTACAAA 0.00 148.21 8.21 Nuclear transcription factor Y subunit C3 (NF-YC3) M. truncatula 332454726332437973388523238

UR57 CATGATGATGCTGGCAAATGTTGAA 0.00 147.45 8.20

UR58 CATGTTTATTTTCGAAAAAAAAAAA 0.00 145.92 8.19

UR59 CATGAAGCAATCTTTGATGAATCAA 0.00 145.15 8.18 NAC domain transcription factor M. truncatula 194394118332436288357508606

UR60 CATGGTTATTAGATTTTGTTGTAAA 0.00 145.15 8.18 Unknown mRNAChloro a-b-binding Superfamily. Fotosystem II

M. truncatulaBLASTP

332438116377671199217071343

UR61 CATGTAGTGACAATGTTTATGAAAASee tag UR93

0.00 145.15 8.18 Peroxidase M. truncatula 332444939377671028357480290

UR62 CATGTTACTGTTTTAGTACAATAAT 0.00 140.57 8.14 Methyl esterasePentatricopeptide repeat-containing protein?? Polyneuridine-aldehyde esterase

M. truncatulaG. max

377672466357483094357483092

UR63 CATGATTCATAGCAAATGAATTGTA 0.00 138.28 8.11 Unknown mRNAUncharacterized protein

M. truncatulaG. max

377672983388492017356540393

UR64 CATGGATAAATTTTACTAGTAGACA 0.00 137.51 8.10 Oxysterol-binding protein-related protein 3A-like G. max 332435008356520898

UR65 CATGTACAATACTTTGCATAAAAAASee tags UR148

0.00 135.99 8.09 Unknown mRNAUncharacterizedDNL zinc finger protein


261237008377672788388521382351726881

UR66 CATGCCCAGGTGGTACTAACTATAG 0.00 135.99 8.09

UR67 CATGGATACTATAGTTATAGGCTAA 0.00 135.22 8.08 Hypothetical proteinProtein kinase

M. truncatulaBLASTP

332435620357462504

UR68 CATGTATTATTTCATCAAAAAAAAA 0.00 133.69 8.06

UR69 CATGAATGTTATCATATCGAAAAAA 0.00 132.93 8.05

UR70 CATGTTATTAGACGATAAATTGAAT 0.00 131.40 8.04

UR71 CATGGTAATAGGATAAGAAATAGAA 0.00 130.64 8.03 Uncharacterized protein Diox-N superfamily. Non-haem dioxygenase

G. maxBLASTP

332447863356542741

UR72 CATGAAAGTGTTATAACTGAAAACA 0.00 126.82 7.99

UR73 CATGAGGAGTTTACATAAAAAAGAA 0.00 126.05 7.98 Transmembrane protein, putativeRING-H2 finger protein ATL22-like

M. truncatulaG. max

377675888332446445357482126356540547

UR74 CATGGTTTTATTTTTGTTCAAAAAA 0.00 125.29 7.97 60S ribosomal protein L39 M. truncatula 332434582357466072

UR75 CATGATATATGCAAGACAGAATCAG 0.00 123.76 7.95 Unknown mRNA Uncharacterized protein

M. truncatulaG. max

332430524377671546388505481356516410

UR76 CATGGCAAACAATCATCTTGAATAA 0.00 123.76 7.95 Alanine aminotransferaseAlanine aminotransferase 2

M. truncatulaG. max

377673178357485702351724368

UR77 CATGGTTTTGGAGTCAAAAAAAAAA 0.00 120.71 7.92

UR78 CATGGATGCAATTTGGAAGAAAGGA 0.00 120.71 7.92 Chloroplast outer envelope protein translocator Toc12DNAJ Superfamily (protein translation, folding, unfolding, translocation, and degradation)

BLASTP21980285225728714738049669

UR79 CATGTGTAGTTTCGTTGATCCAATA 0.00 118.42 7.89 Uncharacterized G. max 332432027377672208403043740

UR80 CATGTATTAATAAAAACCTATTTGC 0.00 118.42 7.89 Germin-like protein (ger1 gene)Rhicadhesin receptorGermin-like protein 5-1-like

M. truncatula 3776725446689033357511662356572881

UR81 CATGTTTTGTACTGTTACAACTTCA 0.00 117.65 7.88 Chloroplast ribose-5-phosphate isomerase M. truncatula 332433979357512270

UR82 CATGAATATTCCAATTAAGATAAGA 0.00 116.89 7.87 ABC transporter G family member M. truncatula 332435594357474148

UR83 CATGGGTTGAAGTTTACTCAGTCCA 0.00 115.36 7.85 Threonine synthase M. truncatula 332445143377671854357454544

UR84 CATGAAAGTTTTTGGTCTTTTCAAA 0.00 114.60 7.84 Lipase M. truncatula 332438208357485766

UR85 CATGAAGCTTGATTTTTTTATAAAA 0.00 112.30 7.81

UR86 CATGGAGTTTCTCTGAAAAAAAAAA 0.00 108.48 7.76

UR87 CATGAAATGATTTGCTCTTTCGAAA 0.00 106.96 7.74 Hypothetical protein M. truncatula 377673230332430853357474994

UR88 CATGGGTTGTTAGTGGTGCTCCTCA 0.00 106.96 7.74 Nascent polypeptide-associated complex subunit beta M. truncatula 332445104332445184377671562357473412

UR89 CATGTTCTTAAGAGGAAAAGAAGTA 0.00 104.66 7.71 GMC-type oxidoreductase M. truncatula 332469224377684007357484414

UR90 CATGCTAGTAATTACAAAGTAAAAA 0.00 104.66 7.71 pr1b gene for putative basic PR1 protein Pathogenesis-related protein 1 (PR1)Unknown_mRNA SCP Superfamily, SCP-PR1-like

Vicia fabaM. truncatulaBLASTP

76873801380005615388499003

UR91 CATGGACGGGCGTAACATTACCGTT 0.00 104.66 7.71 Glycine-rich RNA binding protein M. truncatula 377681980357473272357473250

UR92 CATGGTGGTGTTCTACCTAACATCA 0.00 103.90 7.70 Histone H2A homolog 377683784332434626498895169097

UR93 CATGTAGTGACAATGTTTATGATAASee tag UR61

0.00 102.37 7.68 Peroxidase M. truncatula 332444939377671028357480290

UR94 CATGTAATTTTTATGGTTGGAACTT 0.00 101.61 7.67 Citrate synthase M. truncatula 332431779377673454357459290

UR95 CATGAATTATCTGTAATATCTTGCT 0.00 100.84 7.66 Narbonin M. truncatula 222359694377673000358345263

UR96 CATGTAGAATTCAATGAAGACGACA 0.00 100.08 7.65 Uncharacterized Uncharacterized HNH nucleases

G. maxL. japonicusBLASTP

377672360332430188292747064351720794

UR97 CATGCTACTTGGTTTGCAACTTAGA 0.00 99.32 7.63 ABC transporter family pleiotropic drug resistance protein M. truncatula 332441545377674092357513490

UR98 CATGTTTTATTCTCCGTAGGTTTCA 0.00 99.32 7.63

UR99 CATGAAGATTCTATTAAAAAAAAAA 0.00 98.55 7.62

UR100 CATGGATAAACTATATCACTTCAAA 0.00 97.79 7.61 Proteasome subunit beta typeProteasome-beta-type1

M. truncatulaBLASTP

332431466377672457357454306

UR101 CATGGCGTTAGAATTGTATATAAAG 0.00 97.79 7.61

UR102 CATGTGTTAATAGTATTAGTTTAAT 0.00 97.79 7.61 Zinc finger A20 and AN1 domain-containing stress-associated protein Zinc finger A20 and AN1 domain-containing stress-associated protein 3-like

M. truncatulaG. max

377673644357471694356543587

UR103 CATGTGTTATCTGTCCTGATAAAAT Alcohol dehydrogenase-like protein M. truncatula 332432371357520230

UR104 CATGTGTGGACTGAAAGGAATGGAA 0.00 97.02 7.60 Chloroplast ferredoxin-NADP+ reductase 20721141448055

UR105 CATGAAAAGTATATTTATATTTCAAAntisense3

0.00 95.50 7.58 Cold-regulated proteinSrc2 proteinC2 Superfamily, C2-SRC2-like. C2 domain present in Soybean genes Regulated by Cold 2


332437274357449248351727730

UR106 CATGTCAAATCAATGCAATTAGCAA 0.00 95.50 7.58 Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (gapN) gene

28274679332429800

UR107 CATGTTATAGTTTTTTTGCTATTAA 0.00 94.73 7.57

UR108 CATGCATTGTTTTTATGTAGTTTCA 0.00 93.97 7.55

UR109 CATGGCTGGTCCTGTGTGGAATGAC 0.00 93.20 7.54 Leucine aminopeptidase M. truncatula 332431588377672271357480066

UR110 CATGATTTTTATAGATATGAAAGAA 0.00 91.68 7.52

UR111. CATGCAATATAGTTTATCAAAAAAA 0.00 91.68 7.52

UR1UR12 CATGTGCATTGCATTAAATGAGACA 0.00 91.68 7.52 Unknown mRNAUncharacterizedSuperfamily SoSSB-OBF


332433684332430423377673391217073671351726835

UR113 CATGAGAGAAAGTTGTGTTTAAAAA 0.00 90.91 7.51 Early nodulin protein 12A (ENOD12A) gene??Proline-rich protein precursor??

BLASTP 33244125533244538137767112032542857194460513

UR114 CATGTAAAAAGTTTGATTGCAATAA 0.00 90.91 7.51

UR115 CATGCTCAATATGGATGTTTCTAAT 0.00 90.15 7.49 60S ribosomal protein L10?? M. truncatula 332455911357460550

UR116 CATGTGGTTGTGAAATAACCTTAAT 0.00 90.15 7.49 MYB domain containing transcription factorMYB transcription factor MYB93 (MYB93)

M. truncatulaG. max

261234147332432664357476794351723018

UR117 CATGATAAATATGATCTTAGTTTTA 0.00 90.15 7.49

UR118 CATGCATTCTATAACAACAAGAAAC 0.00 89.38 7.48

UR119 CATGGAGATTGAAGAAAAAAAAAAA 0.00 89.38 7.48

UR120 CATGAAAGAAGTTGTCAGCAAAAAA 0.00 88.62 7.47 Glycine-rich RNA binding protein?? M. truncatula 332433554377672439357473272

UR121 CATGCAATGATAGAAACTGATGTAT 0.00 88.62 7.47

UR122 CATGGGAATTGAGATGGTGACCGAA 0.00 88.62 7.47 Aspartic proteinase 2 G. max 332430099356534976351725344

UR123 CATGAGTTTCTTGTTATAAAGAAAA 0.00 87.86 7.46 Protein phosphatase 2C-like proteinProbable protein phosphatase 2C 39-likeSerine/threonine phosphatases, family 2C


377675176332433330388500557356549704

UR124 CATGGGCAGAGCAGATTGTAGCATA 0.00 87.86 7.46 Zinc finger CCCH domain-containing protein M. truncatula 261234358357461274

UR125 CATGTAATTACAAACAGAATAAACA 0.00 87.86 7.46 Phospholipase D Phospholipase D beta 1-like

M. truncatulaG. max

261232887261241152357507044356567227

UR126 CATGATGGTCATACTAGATCTATCT 0.00 87.09 7.44

UR127 CATGGTCAGTACTTGTCACCGATCA 0.00 87.09 7.44 Heme-binding-like proteinSOUL heme-binding protein superfamily and Nuclear transport factor 2 (NTF2-like)

M. truncatulaBLASTP

332437144357450682

UR128 CATGTTCGATATTGGTTATGAAAAA 0.00 86.33 7.43 Unknown mRNAYGGT family

L japonicasBLASTP

332430821388510799

UR129 CATGGTGTTGACTCCTCTTGAGCTA 0.00 85.56 7.42 KH domain-containing protein Splicing factor 1 (SF1) K homology RNA-binding domain (KH)

M. truncatulaBLASTP

377677095357445252

UR130 CATGTATCTTGTTTTTCACAAAAAA 0.00 85.56 7.42 Unknown mRNA Uncharacterized

M. truncatulaG. max

332433343377673932388501823351728106

UR131 CATGGTAGAAGTATTTTTACAAAAA 0.00 84.80 7.41 Hypothetical protein Uncharacterized protein

M. truncatulaG. max

332431880377671613357445670356558569

UR132 CATGGTCGGTATATTATTTAAGTTT 0.00 84.04 7.39

UR133 CATGGATGGACGTAACATCACAGTASee tags UR8, UR241 and UR250

6.59 1096.29 7.38 Glycine-rich RNA binding proteinGlycine max 31 kDa ribonucleoprotein, chloroplastic-like

M. truncatulaG. max

332445262357473250356541090

UR134 CATGTACCATCTTATTAAAATAATA 0.00 82.51 7.37

UR135 CATGTGGTGCTTCTTCATTTTTCAASee tag UR163

0.00 82.51 7.37 Cytosolic glutamine synthetase (GS3A) gene 88159320750881595

UR136 CATGTTAGTGAATTTTTAGAATAAG 0.00 82.51 7.37 Amino acid transporter M. truncatula 332444231377674486922343953

UR137 CATGAAAATTGTAATTTTTTTTATC 0.00 82.51 7.37

UR138 CATGCTAGTAATTACAAAAAAAAAA 0.00 80.98 7.34

UR139 CATGGAACATCTTGCTCAATTAGTA 0.00 80.98 7.34 Quinone-oxidoreductase-like protein Quinone-oxidoreductase homolog, chloroplastic-like

M. truncatulaG. max

377673011332430278357470784356543357

UR140 CATGTATTAAAATTATAATGAAAAT 0.00 80.22 7.33 Carnitinyl-CoA dehydratase M. truncatula 332478294357503142

UR141 CATGAGTTTCACAAGAAGAAACTGA 0.00 80.22 7.33 Cytochrome P450PREDICTED: cytochrome P450 71D11-like

M. truncatulaG. max

377677526357438832356524349

UR142 CATGGGTATTCAATCTAGTTTTGTT 0.00 79.45 7.31 60S ribosomal export protein NMD360S ribosomal export protein NMD3-like

M. truncatulaG. max

332431584357460772356539803

UR143 CATGAATTGCATTACGCTAGAAAAA 0.00 79.45 7.31 Pheromone receptor-like protein M. truncatula 332463160357465436

UR144 CATGATGTGTTTTGATACAAAAAAA 0.00 78.69 7.30

UR145 CATGTCTTCAGATGCAAAAAAAAAA 0.00 77.92 7.28

UR146 CATGTCATATCATTAGAATCAGACA 0.00 77.92 7.28

UR147 CATGCTTAAATCATCAAAAACTTAT 0.00 77.16 7.27 Phloem filament protein PP1 M. truncatula 332433068377671865332444589357480544

UR148 CATGTACAATACTTTGCATAACTAASee tag UR65

0.00 76.40 7.26 Unknown mRNAUncharacterizedDNL zinc finger protein


332444836377672788388531382351726881

UR149 CATGGAGGAGGTCGTCCAACACAGA 0.00 76.40 7.26 Unknown mRNAProlyl endopeptidase-likePeptidase-S9 Prolyl oligopeptidase family


332446612217074501356508956

UR150 CATGTAAATTTTAATATAGTTGTAC 0.00 75.63 7.24

UR151 CATGTTGAGTATAGTGTGAAATAAC 0.00 75.63 7.24 Pyruvate kinase isozyme A, chloroplastic-like G. max 332437183356574786

UR152 CATGAAGTCTGCTTTTGAATAAAAA 0.00 75.63 7.24 Hypothetical protein M. truncatula 261229733261232965377676218357461146

UR153 CATGCTCTTGGTTAGTTTGTAAATT 0.00 74.87 7.23 Unknown mRNAUncharacterized

M. truncatulaG. max

332437924388518940402794839

UR154 CATGATAACTCACTTGTGTAATTTA 0.00 74.87 7.23 Unknown mRNAAldehyde dehydrogenase family 3 member H1-like, transcript variant 2

M. truncatulaG. max

332438996388516634356552696

UR155 CATGGCTACTTTAAGCTTTTGGGGA 0.00 74.10 7.21 60S ribosomal protein L27a-3 M. truncatula 261236480261238082377671749357485678

UR156 CATGGATTAACTGAGTTGCAATTGG 0.00 73.34 7.20 6a-hydroxymaackiain methyltransferase (hmm6) 1568636332497089

UR157 CATGTCAAACTTTCCCAGACAATAA 0.00 72.58 7.18 V-type proton ATPase catalytic subunit A-like G. max 377672668332431836402794850

UR158 CATGGAATCCGTCCAGGAAAAGGTA 0.00 71.81 7.17 60S ribosomal protein L4 M. truncatula 377672741332430181357439780

UR159 CATGTATGGATGTGTTCATAAACTA 0.00 71.05 7.15 SQUAMOSA promoter binding protein M. truncatula 26122962132544822332433216357442094

UR160 CATGTTTAAACAAAATTAAAAGTAA 0.00 71.05 7.15

UR161 CATGAAGCTTGATTTTTTTAAAAAA 0.00 71.05 7.15

UR162 CATGATTTCTGTGTTTCAAAAAAAA 0.00 70.29 7.14

UR163 CATGTGGTGCTTCTTCATTTTAAAASee tag UR135

0.00 70.29 7.14

UR164 CATGACTCTATGGCAAAGAGATTGA 0.00 70.29 7.14 Uncharacterized protein Unknown mRNA

G. maxM. truncatula

332434248377674055356550603388522250

UR165 CATGATGAGCTCTAGGGTGTTTGCA 0.00 69.52 7.12 Calreticulin Calreticulin-1

M. truncatulaG. max

332445442377671751357441868367460054

UR166 CATGATGCTTATCTTGGTAGATGAA 0.00 69.52 7.12 REF/SRPP-like protein Stress-related protein-likeREF Family. Stress-related protein (SRP)


332445090357446574356549340

UR167 CATGATGTCCTGCGATTTTCTTATA 0.00 69.52 7.12 Unknown mRNA Eukaryotic translation initiation factor 5A-2-likeEukaryotic translation Initiation Factor 5A (eIF5A)

M. truncatulaG. max

377671532388519552356516829

UR168 CATGGCAGTGAAATAGTAAAAGAAA 0.00 69.52 7.12 COP9 signalosome complex subunit M. truncatula 377677552332435940357445650

UR169 CATGAGAGCCATATCTCAATTCAAT 0.00 69.52 7.12 Callose synthaseCallose synthase 10-like

M. truncatulaG. max

194393815358348998356507328

UR170 CATGGACGAGAAGCAAATCTTTCAA 0.00 68.76 7.10 Ribosomal protein L1 M. truncatula 332435997332430724377671763357461282

UR171 CATGTTTGTTGGAGGAACTGACACA 0.00 68.76 7.10 Cytochrome P450 71A1-like G. max 377671890332430386356563144

UR172 CATGTACATATATTTTAGAGACTCT 0.00 68.76 7.10 Uncharacterized protein Microtubule-associated serine/threonine (MAST) kinase

G. maxBLASTP

332448692377679380356520646

UR173 CATGAAATTTTGTTTTTAAACCCAA 0.00 67.99 7.09 Hypothetical protein DUF 506

M. truncatulaBLASTP

332468630357440534

UR174 CATGTATCCTTTACACCGTTTACAA 0.00 67.23 7.07 Transmembrane protein-like protein M. truncatula 332432244377672548357479932

UR175 CATGTAAAATTTTCTGAGTATTTAT 0.00 67.23 7.07

UR176 CATGTTTTAAGTGTAATAAATTTCT 0.00 66.47 7.05

UR177 CATGTAATATTTGGAAAAAAAAAAA 0.00 66.47 7.05

UR178 CATGTATTTTTTTTTTGGTTAATTA 0.00 65.70 7.04

UR179 CATGAACCTCATTGAGTTGGACACA 0.00 65.70 7.04 40S ribosomal protein S19-1 M. truncatula 332433144377671971357515378

UR180 CATGAAGTTGTTATTATGAACTAAT 0.00 64.94 7.02 Nodulin MtN21/EamA-like transporter family protein Auxin-induced protein 5NG4-like

M. truncatulaG. max

332434428377672952357461542356518532

UR181 CATGAATGAAATTGATTGAGTAAAA 0.00 64.17 7.00

UR182 CATGATACAAAAAGTTGGATCGCAT 0.00 64.17 7.00 Putative NADH-dehydrogenaseExternal NADH-ubiquinone oxidoreductase

M. truncatula 37725946357475816

UR183 CATGGATGTTTCAGACACTGCCAAA 0.00 64.17 7.00 GTP-binding protein Ras-like proteinRab GTPase family 1

M. truncatulaBLASTP

377672805332429889303747357445236

UR184 CATGTCTATTGTTGCAAAAAAAAAA 0.00 64.17 7.00

UR185 CATGAAAAACAATTTTCCATTAAAA 0.00 63.41 6.99 Unknown mRNA Uncharacterized protein

M. truncatulaG. max

377671673332431079388514284356562913

UR186 CATGTTAAAATTAACTTTGGTGCTA 0.00 62.65 6.97 FRIGIDA-like protein G. max 332431505377674725356504457

UR187 CATGGATTTATATTACTATTTAAAA 0.00 61.88 6.95 40S ribosomal protein S17 S17e Superfamily

M. truncatulaBLASTP

377671551358343460

UR188 CATGGGAAGACGGAAGAGACGGTGA 0.00 61.88 6.95 Short-chain type dehydrogenase/reductase Short-chain type dehydrogenase/reductase-like

M. truncatulaG. max

377673004332449453358346913356560962

UR189 CATGTATATTGTTACTCAAAAAAAA 0.00 61.88 6.95

UR190 CATGTGTTTATATGTTTATCTAGTT 0.00 61.88 6.95 Unknown mRNA DUF 4408

M. truncatulaBLASTP

332439142388515446

UR191 CATGATAATTGATGGGATCTAATTC 0.00 61.12 6.93 Hypothetical proteinUncharacterized

M. truncatulaG. max

332431529377674034357445534357445534

UR192 CATGCCGATCCTGATGATCTTGGGA 0.00 61.12 6.93 Copper zinc superoxide dismutase 60360879169069

UR193 CATGGCAATATTCCTCCCTAAAAAA 0.00 61.12 6.93 ATP synthase subunit epsilon Putative epsilon subunit of mitochondrial F1-ATPase (f19c24.25 gene)

M. truncatulaC. arietinum

33243055637767259335748695221068675

UR194 CATGTCCAATTGCATCTAAAAAAAA 0.00 61.12 6.93

UR195 CATGTTTGTTTTCCACTTGACCAAA 0.00 61.12 6.93

UR196 CATGACAAAGCAGACCGAATTCAAA 0.00 60.35 6.92 Isocitrate dehydrogenase Isocitrate dehydrogenase

M. truncatulaG. max

332432779377672687357465470356533247

UR197 CATGGTTGACACTAATCAGAGGTAT 0.00 60.35 6.92 LRR receptor-like serine/threonine-protein kinase Probable inactive receptor kinasePKc-like Superfamily, LRR-8 Multidomains


332430912357496268356573436

UR198 CATGTATATAGTTTAATTTCATTGA 0.00 60.35 6.92

UR199 CATGTCTTTGGATACTGTCATACTT 0.00 60.35 6.92 Unknown mRNA Ran-binding protein 1 homolog b-likeRan-binding domain


377671411388518784356576094

UR200 CATGCTTAAAATATCTTTCATATTA 0.00 59.59 6.90 40S ribosomal protein S20-2 M. truncatula 377671842357470584

UR201 CATGGAACAATACTTTGTATTAGTA 0.00 59.59 6.90

UR202 CATGGTTAATTTATGAAAAGAAACA 0.00 59.59 6.90 Cysteine synthase M. truncatula 377672811357480874

UR203 CATGCAAAATATCTTTTGTTTCAAA 0.00 58.83 6.88 PPF-1 proteinProtein PPF-1, chloroplastic-like

G. max 4218522332429811356539021

UR204 CATGGGCTATACATACATAAAAAAA 0.00 58.83 6.88

UR205 CATGGTCTCAAATGTTATTGAAAAC 0.00 58.83 6.88 Cinnamyl alcohol dehydrogenase Cinnamyl alcohol dehydrogenase-like

M. sativaG. max

37767467519594356575669

UR206 CATGTTATATGGAATTTGCTCTTAA 0.00 58.83 6.88 Acyl carrier proteinAcyl-carrier protein

M. truncatulaBLASTP

377676112332431764357447472403043891

UR207 CATGTTTGATAGAAAAATGTAATAT 0.00 58.83 6.88

UR208 CATGATAATATAAGCAATGCAATTA 0.00 58.06 6.86

UR209 CATGCAATCATTCGGCTCGCAAGGA 0.00 58.06 6.86 Gamma-soluble NSF attachment protein Gamma-soluble NSF attachment protein-like

M. sativaG. max

377672004332430274358344550356556486

UR210 CATGGATTAATGGTCAATTGGATTA 0.00 58.06 6.86

UR211 CATGGGATTGGACAACGTAAATTGA 0.00 58.06 6.86 Coatomer subunit beta-1-like Coatomer-beta-C

G. maxBLASTP

377678081332434664356526313

UR212 CATGTCTTGGATGATAATGATGAGA 0.00 58.06 6.86

UR213 CATGACATTTCACATTGCAAAATGC 0.00 57.30 6.84 Glycine max protein kinase APK1A, chloroplastic-like G. max 377679254332434011403044465

UR214 CATGCTTTATGTATAAAAGAAACAT 0.00 57.30 6.84 Chaperone protein dnaJ ?? M. truncatula 332433046332431517357489940

UR215 CATGGTTATCTCAAGTCATTGTATA 0.00 57.30 6.84

UR216 CATGTGAATGATTTTGGTAAAAAAA 0.00 57.30 6.84

UR217 CATGAATTATTAGAAACATTACATCAntisense

0.00 56.53 6.82 Peroxidase Peroxidase

M. truncatulaT. repens

3776713403574763704138646

UR218 CATGATTATTATCAATAGCAAAAAA 0.00 56.53 6.82

UR219 CATGGCTGATTTCAGAGAACAGTAT 0.00 56.53 6.82 HMG1/2-like protein HMGB-UBF-HMG-box

M. truncatulaBLASTP

377671617332444979357517686

UR220 CATGGTTGAGATGGCCAAATCAGTG 0.00 56.53 6.82 Probable UDP-arabinopyranose mutase 5-likeReversibly glycosylated polypeptide. RGP Superfamily

G. maxBLASTP

377675759332433423356566936

UR221 CATGTTCATTATTGATGAAAAAAAA 0.00 56.53 6.82

UR222 CATGTTTTTGCACAGGATTTATTCA 0.00 56.53 6.82 RING finger and transmembrane domain-containing protein 2-likeRING Superfamily

G. maxBLASTP

332454515356509107

UR223 CATGACCTGTCCTCTCTTCGACACA 0.00 55.77 6.80 O-linked GlcNAc transferase like protein ?? M. truncatula 332435370357441256

UR224 CATGAAATGAAATATGTGAATTGAA 0.00 55.01 6.78

UR225 CATGAATTTATATTTACTGATTTAASee tags US123

0.00 55.01 6.78 UncharacterizedRibosomal S10 Superfamily

G. maxBLASTP

377672855351722900

UR226 CATGCAGGATCTAAAATTTAACTGA Antisense

0.00 55.01 6.78 Unknown mRNA Thiazole biosynthetic enzyme

M. truncatulaG. max

377672757388512816356536042

UR227 CATGCTTTATAGCAAGTGGTTTTTA 0.00 55.01 6.78

UR228. CATGAATGTTGAAAACTTTATAATA 0.00 54.24 6.76

UR229 CATGCCATAGAAATGATATAATTCA 0.00 54.24 6.76

UR230 CATGGTTGACTTAACTTAAAAAAAA 0.00 54.24 6.76

UR231 CATGTAATGGTTCCTTCCTTTAAAT 0.00 54.24 6.76

UR232 CATGAGTAGAGGTTTTGGCTTTGTT 0.00 53.48 6.74 Translation initiation factor 3 subunit Translation initiation factor 3 subunit G-like

M. truncatulaG. max

332435744357521656356567602

UR233 CATGAAACTTGAAAATTAAAAAAAA 0.00 52.71 6.72

UR234 CATGATTGGATTTGAGTTTTAAAAA 0.00 52.71 6.72 60S ribosomal protein L17?? M. truncatula 377671899357463032

UR235 CATGGAGCAAAATAAGGAGAAAAAT 0.00 52.71 6.72 Hypothetical protein Uncharacterized

M. truncatulaG. max

332431367377672761357464418403044051

UR236 CATGGATCTTTGGCCCGTGCCGGGA 0.00 52.71 6.72 40S ribosomal protein S3040S ribosomal protein S30-like

M. truncatulaG. max

332431297357476844356514307

UR237. CATGAGGAACAAGGATAAGGGAAGCAntisense

6.59 570.68 6.44 Proline-rich protein precursor BLASTP 332441255332445381194460513587508

UR238 CATGCAGGTGTGGCCTCCAATTGGA 26.37 2195.64 6.38 Ribulose 1.5-bisphosphate carboxylase (RBC) small subunit 16915216914720856

UR239 CATGTATTTGAATTAATTAATAAAASee tag UR50

6.59 460.67 6.13 Phloem specific protein mRNA Phloem specific proteinPhloem specific protein

332445206377671856

UR240 CATGGTTGGATGGATATGTGAATAA 26.37 1637.18 5.96 3-thioredoxin h B5 thioredoxin h

M. truncatula 2746689333243427671534921

UR241 CATGAATGAATAGTGTTTGGTGTAASee tags UR8, UR133 and UR250

52.73 3263.67 5.95 Glycine rich protein precursor (grp1 gene)Dormancy-associated protein (DRM2)

3324415053324457431144153972605888

UR242 CATGATGAAGGGTGGTGGAAGAAGA 6.59 388.10 5.88 Uncharacterized protein G. max 332437292356524737

UR243. CATGTGTTAGTGTTTAAAAAAAAAA 13.18 656.25 5.64

UR244 CATGGAGGCAAGAAGTGGAAGTAAA 19.78 946.56 5.58 GPRP Glycine- and proline-rich protein Proline-rich family protein (PRP1)

V. fabaC. arietinum

332445321377672140323669575169870350

UR245 CATGTTTGCAATAGCTAAAAAAAAA 6.59 313.23 5.57

UR246 CATGAACTTCACATCGGTGATCTAA 13.18 611.94 5.54 Beta xylosidase Beta-D-xylosidase 1-like

M. truncatulaG. max

377672404332430269357449038356556037

UR247 CATGTAAGGTCTCAATAGTTAAATA 13.18 561.52 5.41 Hypothetical protein ?? M. truncatula 377671461357478944

UR248 CATGTATTAATCATAAAAAAAAAAA 6.59 278.08 5.40

UR249 CATGATGTTTTCTAAAAAAAAAAAA 6.59 241.41 5.19

UR250 CATGAATGAATAATGTTTGGTGTTASee tags UR8, UR133 and UR241

369.13 13375.55 5.18 Putative glycine rich protein precursor (grp1 gene). 114415397

UR251 CATGGGAAAAAAAAAAAAAAAAAAA 19.78 691.39 5.13

UR252 CATGTATAATTAATTGGATGAAAAASee tag UR254

32.96 1089.42 5.05 Pathogenesis-related protein 4A (PRP4A) Pathogenesis-related protein 4 (PR-4)Pre-hevein-like protein (PHLP)

L. culinaris 3254433122235947873812024015553524090341217381204

UR253 CATGACTGATCAAACAAGAAAACAA 13.18 418.65 4.99 ATP-dependent Clp protease proteolytic subunit-related protein ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-likeCaseinolytic protease (ClpP)

M. turncatulaG-maxBLASTP

377682124357511830403043641

UR254 CATGTATGTATACTTAATTGGATGASee tag UR252

6.59 204.74 4.96 Pathogenesis-related protein 4 (PR-4) L. culinaris 37767183832544574332436140409034121

UR255 CATGAAGAACCATTTTCATTTCAAA 6.59 198.63 4.91 Aspartic proteinase Aspartic proteinase-like

M. truncatulaG. max

377672202357511706356505734

UR256 CATGGAACAATTGTTTGCAAAAAAA 6.59 194.81 4.89

UR257 CATGAGGACGACAGATGTAACTGGA 6.59 189.46 4.85 Translation elongation factor (tufA) gene 233065420070083

UR258 CATGATAATAGATTGATTCTACGAT 6.59 181.82 4.79 Metal transport protein (ZIP7) Max zinc transporter 2-like

M. truncatulaG. max

37768012633243598038036139356566491

UR259 CATGAAATGATTTGCTCTTTCGACA 13.18 352.19 4.74 Hypothetical protein M. truncatula 377673230332430853357474994

UR260 CATGACACAATCCTGAAATTTCTAA 6.59 168.07 4.67 Unknown mRNA Uncharacterized protein

M. truncatulaG. max

332431431377673937388494101356576488

UR261 CATGTGTCATTCTAATAAAATAAAC 65.92 1631.07 4.63 Cytochrome P450 Cytochrome P450 monooxygenase (cyp gene)

M. truncatulaC. arietinum

3324421673776741523575159106002278

UR262 CATGTACCGTAGAGCACATCAAAGA 6.59 157.38 4.58 Mitogen-activated protein kinase Mitogen-activated protein kinase 4-like

M. truncatulaG. max

377676569357481558403043794

UR263 CATGTTCAGTTTGAAATAGTGGTTA 6.59 156.61 4.57 Nascent polypeptide-associated complex NAC-Superfamily and UBA-Superfamily

M. truncatulaBLASTP

377671623357509188

UR264 CATGGATTGCCTCTGGCATAAATAC 6.59 149.74 4.51 LITAF-domain-containing protein (LITAF) LITAF-domain-containing protein

M. truncatula 63334260332433606377671491357501360

UR265 CATGATTGATTAGTTGTTTTGTTTA 6.59 146.68 4.48 Protein kinase M. truncatula 332433723357479456

UR266. CATGTTGATTAAAGAAAAAAAAAAA 6.59 143.63 4.45

UR267 CATGGTGTTAGATATAATAGAATCA 26.37 539.36 4.35

UR268 CATGAAGAATTTTAGTGAAACAATA 6.59 127.58 4.27 Transcription regulation protein, putative F-box/kelch-repeat protein At1g57790-likeF-box like family


332431037377674384388513168356548440

UR269 CATGTCATCATTGAGACAAACCGAASee tag DS128

6.59 126.82 4.27 Magnesium-protoporphyrin IX monomethyl ester Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase

M. truncatulaG. max

332445045377673156357509134356504618

UR270 CATGGATCTCTCTTCAGCAGATTGA 171.38 3194.15 4.22 MEY type 1 metallothionein Metallothionein-like protein

33244495437767106947076863312504

UR271. CATGGTAAACTGATACAAAAAAAAA 13.18 239.89 4.19

UR272 CATGTTTGTGACAAAAAAAAAAAAA 13.18 236.07 4.16

UR273 CATGTTTTAAAAAAAAAAAAAAAAA 59.32 1042.05 4.13

UR274 CATGTTATTTTTCAAAAAAAAAAAA 13.18 231.48 4.13

UR275 CATGTTTGATGATCAAAAAAAAAAA 6.59 111.54 4.08

UR276 CATGTGGAAGAGGATCATCTAAAAT 13.18 219.26 4.06 Glutaredoxin M. truncatula 332431776377675468357461920

UR277 CATGTAAAACTTATGTAGCTTGTTA 6.59 109.25 4.05 ATP-dependent Clp protease adapter protein clpS M. truncatula 377673168357488428

UR278 CATGTATTGCATTCAAATTTGCTTA 6.59 106.19 4.01 PsCHS5 gene for chalcone synthase 23512071 Fold change was calculated as log2 (Normalized TAG copy number resistant/ Normalized TAG copy number control), when this last value was 0.0 was substituted by 0.5.

2 Only additional species to Pisum sativum are indicated; BLASTP indicated that a further search of the amino acid sequence was carried out.

3 Antisense means that the tag sequences coincides with the gene antisense sequences.

?? Means that the available pea sequence was too short, or that the tag sequence was not completely complementary for a sure identification.

Supplementary Table 5. Underrepresented deepSuperSAGE tags (DR) from pea ZP0104 leaves infected with Pseudomonas syringae pv. pisi race 2 (strain P134- resistant response).

Tag sequence Normalized TAG copy

number control

Normalized TAG copy

number

Fold Change1

Identification Species Gene identification number

DR1 CATGTAAAAAAAAAAAAAAAAACTG 384.23 0 -9.59

DR2 CATGTATAGATACATATATTTATAA 90.36 0 -7.50 Serine hydroxymethyltransferase 227307897169157377672449

DR3 CATGTAGAGACCGCATCCCAGCAGT 128.57 0.76 -7.39

DR4. CATGCTAGAGACCGCATCCCAGCAG 114.61 0.76 -7.22

DR5 CATGTTCTTCCCAATTTAATGTGAA 154.28 1.53 -6.66 Light-harvesting chlorophyll-a/b binding protein Lhcb1Chlorophyll-a/b binding protein 8, CAB8

325429663324850833254307116905056809378

DR6 CATGTCTTGTGTATTAGTAAATGTT 914.66 10.70 -6.42 Transmembrane protein, putativePREDICTED: zinc finger protein 512B-like

M. truncatulaG. max

332431228388522030356548908

DR7 CATGTGAATATTGTTCCTATTTCAG 61.71 0.76 -6.34

DR8 CATGTTGCATTGAAGTTGTTACTTG 52.16 0.76 -6.09 Ripening-related protein mRNAMLP-like proteinPathogenesis-related protein 10a (PR-10a)

M. truncatulaL. culinaris

33243599034452232357515826409034127

DR9 CATGTATTCAGAAATGAACTCTGTG 48.49 0.76 -5.99 Ultraviolet-B-repressible protein?? 1847649737767197932542456

DR10 CATGCCGCATCCCAGCAGTTTTTTT 85.96 1.53 -5.81

DR11 CATGTAGTGCCAATGTTTATGATAT 21.30 0 -5.41

DR12 CATGTACAGAAGAACTGAGATTGTT 19.84 0 -5.31 Photosystem I chlorophyll a/b binding protein mRNAPSI light-harvesting antenna chlorophyll a/b-binding protein (lhcA-P4)

125660619330370635

DR13 CATGGGAATCGCCTAAAGAACAGAT 19.10 0 -5.26 Photosystem I reaction center subunit II M. truncatula 332488311357480840

DR14 CATGGATGATGTATGTGTTGGTTGT 16.90 0 -5.08

DR15 CATGTTATCTTCTATTTTATTTTCT 72.00 2.30 -4.97

DR16 CATGTGTTGAGGTTTGGCAGAGTTC 45.55 1.53 -4.90 Unknown mRNABTB/POZ domain-containing proteinBTB/POZ domain-containing protein


332446288377678400388495745356513374

DR17 CATGTAATTTATAAACAATTTTCTT 409.94 15.28 -4.75 Fasciclin-like arabinogalactan protein?? M. truncatula 332430395357495516

DR18 CATGCATTGTTTGGTCCCCCTTTGC 13.24 0 -4.75 Nuclear transcription factor Y subunit A7 (NF-YA7)Nuclear transcription factor Y subunit A-9-like

M. truncatulaG. max

332452766194391827388523192403044151

DR19 CATGCTGCGTTTGTGCTGTTAACTT 58.04 2.30 -4.66

DR20 CATGTTTTGTAATTAATTTCATCAT 19.10 0.76 -4.64

DR21 CATGTTTGGTGATTTTGGGTGATTG 148.4 6.11 -4.60 Nitrate transporter M. truncatula 332447026357493284

DR22 CATGCGCATCCCAGCAGTTTTTTTT 18.37 0.76 -4.59

DR23 CATGATCAAACACATACATCTATTT 11.75 0 -4.56

DR24 CATGTACATAAGAACTGAGATGGTT 12.75 0 -4.53DR25 CATGAGATCTTGTTTTTGTTTTATG 35.26 1.53 -4.53

DR26 CATGGACCCTTATGTGTCAAAGAAT 11.02 0 -4.46

DR27 CATGCATATGGCTATCTTTCATTTG 48.49 2.30 -4.40

DR28 CATGAGAACTCCAAGCTTGAGCCTC 10.28 0 -4.36

DR29 CATGATGTGTAAGTATGATTGCATC 10.28 0 -4.36 Photosystem I psaH proteinPhotosystem I reaction center subunit VI

T. pratenseM. truncatula

33243931937767122833520418357454926

DR30 CATGTTGAAAACTTTGAGTTGATTG 47.02 2.30 -4.36 Unknown mRNA 377676035332430012

DR31 CATGGAGTAAAGTATGCCATATAAA 15.43 0.76 -4.34

DR32 CATGTTTTGGCTGTGATTCTTCTTC 15.43 0.76 -4.44

DR33 CATGATGCGCCCTTGTGAAGGGGGT 9.55 0 -4.25

DR34 CATGTTGAACTGTTTGATGTCCCTT 9.55 0 -4.26 AMMECR 1 family proteinUncharacterized proteinAMMECR1 Superfamily


377672675332430261388502293356575145

DR35 CATGTGTTTGTGTGCTTTTCTTTTG 28.65 1.53 -4.23

DR36 CATGAAGTTATAGCAACTACCGCTGSee tag UR4

8.81 0 -4.14 Pea disease resistance response protein 39Defensin (Def2.1) geneGamma-thionin family. Defensin-like protein

M. truncatula BLASTP

2220874416907533243684437362323

DR37 CATGAATGTTTTGGAATATCATAGG 8.82 0 -4.14 Unknown mRNARRM (RNA recognition motif) Superfamily

M. truncatulaBLASTP

377677609332438934261237429388502671

DR38 CATGCGAATAATCAATCTATTTTAC 8.82 0 -4.14

DR39 CATGGTGCTGTTTGGCACTTTCAGT 8.81 0 -4.14

DR40 CATGTTTAAAACGTATGCAATGTTG 8.81 0 -4.14

DR41 CATGCACTTCTGGGACCTGAGACTC 24.98 1.53 -4.03 Photosystem II CP43 protein; chloroplast genes 27435889343022

DR42 CATGTACATTTTTCATTTGATTTGG 24.98 1.53 -4.03

DR43 CATGATTTGGGATCACCCTAAGGCTAntisense

8.08 0 -4.01 EPIDERMAL PATTERNING FACTOR 2-like G. max 261238304332467519356556992359806367

DR44 CATGCGTCTTTATGTGTTTCACGTA 8.08 0 -4.01 Glicine-rich proteinUncharacterized protein

C. arietinumG. max

33245350621068671356524272

DR45 CATGTTTTATTATCTTAATATGTAT 8.08 0 -4.011 Fold change was calculated as -log2 (Normalized TAG copy number control/ Normalized TAG copy number), when this last value was 0.0 was substituted by 0.5.

Supplementary Table 6. Overrepresented deepSuperSAGE tags (US) from pea ZP0104 leaves infected with Pseudomonas syringae pv. pisi race 6 (strain P123- susceptible response)

TAG Sequence Normalized TAG copy

number control

Normalized TAG copy

number

Fold change1

Identification Species Gene identification number

US1 CATGTCACAAGAACAGAATGAACAT 0.00 481.19 9.91 Cryptochrome 2B (CRY2B) Cryptochrome 2B M. truncatula

3324455633772501045935263357439516

US2 CATGGATGGATATGTGAATAAAATC 0.00 309.81 9.28

US3 CATGTTCTGCTGTATAAATGATTTG 0.73 355.95 8.92 Inhibitor of trypsin and hageman factor Proteinase inhibitor-like

M. truncatulaG. max

377673269357441046356576500

US4. CATGTATCCCATCTTAAATAAGATT 0.00 138.42 8.11

US5 CATGCTGCTGACCGCATCCCAGCAG 0.73 197.75 8.07

US6 CATGTTTTTTTTTTTTTTTTTTTTT 0.00 131.83 8.04

US7 CATGCACCGAAGCTACGGGTATCAT 0.73 171.38 7.87 rDNA 23S Pseudomonas syringae pv. syringae

377671115

US8 CATGTTGTTCGACAGAAGTAAAGAG 0.73 164.79 7.81

US9 CATGAATAATAATAACCTATATTCA 0.00 105.47 7.72 Drm3 mRNA ??Dormancy/auxin associated protein??

M. truncatula 21552997357511876

US10 CATGCTCTGTGGCATCCGAGTTGTA 0.73 151.61 7.69

US11 CATGAAAAAAAAAAAAAAAAAAACT 0.00 72.51 7.18

US12 CATGTGTCATTGTAATTTTGTACAC 0.00 72.51 7.18

US13 CATGTTCAGGAAGAAAATAAATTCC 0.00 72.51 7.18

US14 CATGTTGATTAATGTTATGCGTGAA 0.00 72.51 7.18

US15 CATGTTGCATATTATGGAGAAATAA 0.00 65.92 7.04 Peroxiredoxin (prx gene)Peroxiredoxin

M. truncatula 377671816189094612357500688

US16 CATGTTTTATGATTTGTATTTTTTT 2.20 270.26 6.94

US17 CATGCTGCTGACGCATCCCAGCAGT 0.00 59.32 6.89

US18 CATGGGAGAAAGTTGTGTTTTGTTC 0.00 59.32 6.89 Early nodulin protein 12A (ENOD12A) gene??enod12 gene??Proline-rich protein precursor??

V. sativaBLASTP

37767112033244538119446051312056110

US19 CATGTATACCATCTTAAATAAGAGT 0.00 59.32 6.89

US20 CATGTATGTGTATATGTGTGTCTTT 0.00 59.32 6.89 Wound-inducible cytochrome P450 Cytochrome P450 71A26-like Cytochrome P450 family

G. maxBLASTP

332431935377672200356561680

US21 CATGTGCCATTGTAATTTTGTGCACSee tag US68

0.00 59.32 6.89 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) subunit A (EC 1.2.1.13) Glyceraldehyde-3-phosphate dehydrogenase A

M. truncatula 20728377673897332444877357508528

US22 CATGTTAAAATTTTGTGGATTTCCT 0.00 59.32 6.89

US23 CATGTTAGCTTCCAATGTAATAAAG 0.00 59.32 6.89 ABA-responsive proteinPathogenesis-related protein 10b (PR-10b)

L. culinaris 20632332445605409034125

US24 CATGTTGTATTTTATGAATCTTGCT 0.00 59.32 6.89 Photosystem I reaction center subunit XI M. truncatula 377671646357507746

US25 CATGTCTTGATTATCACTTTTCTTT 11.02 1212.86 6.78 Embryo-abundant protein EMB MethyltransferaseMethyltransferase DDB

M. truncatulaBLASTP

20339365332431978357509478356504711

US26 CATGATAAAAAAAAAAAAAAAAAAA 0.00 52.73 6.72

US27 CATGCTGTCTTTTATGAATCTTGCT 0.00 52.73 6.72

US28 CATGGATAATCCAAGTTTAAAACTG 0.00 52.73 6.72

US29 CATGTTCCTTTGTTTTTTTTTTTGT 0.00 52.73 6.72

US30 CATGTTTTAAAATGATTCTAACTCG 0.00 52.73 6.72

US31 CATGTTTTTTCTTCTCTATTTTTCC 0.00 52.73 6.72 Aldo/keto reductase family oxidoreductaseProbable NAD(P)H-dependent oxidoreductase 1-like

M. truncatulaG. max.

377671996332434433357473646356560086

US32 CATGCAAAAAAAAAAAAAAAAAAAA 0.00 46.14 6.53

US33 CATGCTGCTGAACCGCATCCCAGCA 0.00 46.14 6.53

US34 CATGTATTTGAACCTTGAATGTGAA 0.00 46.14 6.53

US35 CATGTCATTCAATATATAGTGCTAA 0.00 46.14 6.53

US36 CATGTTCCAATATTAATGAAAATGA 0.00 46.14 6.53

US37 CATGTTTTGATTAAGTTAAGGATAT 0.00 46.14 6.53

US38 CATGGAGACACATAGTTTACTTCTT 12.49 1120.58 6.49 U-box domain-containing protein U-box domain-containing protein 27-like

M. truncatulaG. max

377678696357464564356525585

US39 CATGCAAGTCGAGCGGCAGCACGGG 0.73 65.92 6.49

US40 CATGCTGCTGCGCATCCCAGCAGTT 0.73 59.32 6.34

US41 CATGAAATAAATTTGGTGGTCTATTSee tag US85

0.00 39.55 6.31 Glucan endo-1.3-beta-glucosidase Beta-1.3-glucanase


332435957377676391357448996409034123

US42 CATGAAATCAAATGAAAGATCTTGC 0.00 39.55 6.31 Chalcone isomeraseChalcone isomerase

M. sativa 37048709166397

US43 CATGAACTTGCTAATGACTGTGCTT 0.00 39.55 6.31 LATE BLOOMER 1 (LATE1)GIGANTEA

M. truncatula 332447954145567025357443536

US44 CATGAGAGAAAGTTGTGTTTTTTTC 0.00 39.55 6.31

US45 CATGATAGAAAGTTGTGTTTTGTTC 0.00 39.55 6.31

US46 CATGGTCATATGCTACCACCTTTGT 0.00 39.55 6.31

US47 CATGTAATGTATTTTGCAACCTACT 0.00 39.55 6.31 Extensin (Ext)??Extensin (SbHRGP3) gene??

M. truncatulaG. max

3324453783324450853303706361165321

US48 CATGTACTTTTTTTTCTTATTCAAT 0.00 39.55 6.31

US49 CATGTATCTCATCTTAAATAAGAGT 0.00 39.55 6.31

US50 CATGTATGCCTCTCCTTCAATAAAT 0.00 39.55 6.31 Disease resistance response protein PR10 (DRR49a) gene Disease resistance response protein (PI49)

33249803996726922552

US51 CATGTCTCCCATCTTAAATAAGAGT 0.00 39.55 6.31 Carbonic anhydrase 33250504020672

US52 CATGTTAAAAAAAAAAAAAAAAAAA 0.00 39.55 6.31

US53 CATGTTATGGAGTCTGCGAAAAAAT 0.00 39.55 6.31

US54 CATGTTTATAGAATGCCTTTTTATT 0.00 39.55 6.31

US55 CATGACTTAATGCAATGAAGGTACT 0.00 32.96 6.04

US56 CATGAGATATCTCCTATTTTCTCTC 0.00 32.96 6.04 Beta-glucosidase G2??Beta-glucosidase 24-like?

M. truncatulaG. max

377675479158634899356541821

US57 CATGATCTGTGTATGGGGTTTGCAC 0.00 32.96 6.04

US58 CATGATTTTTTTTTTTTTTTTTTTT 0.00 32.96 6.04

US59 CATGCCATCAATAGGTGCAAGCATT 0.00 32.96 6.04

US60 CATGCGATAGTGAAAGACAGATGTT 0.00 32.96 6.04

US61 CATGGAGTTGCCAATGAAGTTGATG 0.00 32.96 6.04

US62 CATGGTTCCTTCCTATGTTGTTTCT 0.00 32.96 6.04

US63 CATGTAAAATAAAAATGTCCCTTAC 0.00 32.96 6.04

US64 CATGTAAGTCTTTTTATTAAGCCTC 0.00 32.96 6.04

US65 CATGTACCTCATTCTAGTTTTCCCTSee tag DS56

0.00 32.96 6.04 Glycine max 40S ribosomal protein S25-2-like Ribosomal S25 Superfamily

G. maxBLASTP

332432111377671300356538746

US66 CATGTCATATCATCCTTAAGTGGAC 0.00 32.96 6.04

US67 CATGTGACATTGTAATTTTGTACAC 0.00 32.96 6.04

US68 CATGTGCCATTGTAATTTTGTTCACSee tag US21

0.00 32.96 6.04 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) subunit A (EC 1.2.1.13)gpa1 gene for glyceraldehyde-3-phosphate dehydrogenase. subunit A

20728332444877

US69 CATGTTAATCAATTCTTTAATGCCT 0.00 32.96 6.04

US70 CATGTTGGATAATATGGTTGTACCT 0.00 32.96 6.04 Unknown mRNA Probable nicotinate-nucleotide pyrophosphorylaseNicotinate-nucleotide pyrophosphorylase


332437582217072003356530753

US71 CATGTTTAGTATAGGATATACTCAG 0.00 32.96 6.04

US72 CATGTTTCATTGATCCATTAACCTCAntisense

0.00 32.96 6.04 Hypothetical protein M. truncatula 332449927357476518357476524

US73 CATGTTTCTAAAAAAAAAAAAAAAA 0.00 32.96 6.04

US74 CATGTTTGCAGCCTCAGTGTTTCAG 0.00 32.96 6.04

US75 CATGTTTTTTTTTTCTATGTATGTA 0.00 32.96 6.04

US76 CATGGTGTAATCAGTTACCATCCCT 0.73 46.14 5.97 1-aminocyclopropane-1-carboxylate oxidase-like proteinGibberellin 20 oxidase 1-B 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like

M. truncatulaG. max

377674030358347265356521138

US77 CATGGTTATGGATGGATGATTGATT 0.73 46.14 5.97

US78 CATGGTTTTTAATTGCCAATTTTGC 0.73 46.14 5.97

US79 CATGAAGTTTGGTTTGTTCATCTTC 0.73 39.55 5.75

US80 CATGATGAACATCTCAAATTTCTTC 0.73 39.55 5.75 Vicianin hydrolase Beta-glucosidase Vicianin hydrolase-like

V. sativaM. truncatulaG. max

37767178333243106086553272357457464356528559

US81 CATGTGGTTGAGAATAACATTGTCC 0.73 39.55 5.75 B12D-like protein Uncharacterized protein B12D family.


377671444357462024356516715

US82 CATGTGTGATGGCCATAGTAGACTGAntisense

0.73 39.55 5.75 Uncharacterized proteinProbable WRKY transcription factor 70-like

M. truncatulaG.max

332453886357506690356532150

US83 CATGTTGTTCGACAGAAGTAAACAG 0.73 39.55 5.75

US84 CATGTTTTAAGAATTTTGTAATATT 0.73 39.55 5.75

US85 CATGAAACATTCAGAGAAACCTTAAAntisenseSee tag US41

0.00 26.37 5.72 Glucan endo-1.3-beta-glucosidaseBeta-1.3-glucanase


332435957377676391357448996409034123

US86 CATGACCGCATCCCAGCAGTTTTTT 0.00 26.37 5.72

US87 CATGAGTTGTTTGAACCTTATTTTT 0.00 26.37 5.72

US88 CATGATCCAATTCGTTTTAACTCCTAntisense

0.00 26.37 5.72 NAC domain protein NAC2NAC domain protein (NAC32)

M. truncatulaG. max

332453364377677033354992036356512865

US89 CATGATGTCTTGAACCTTAGGGTTT 0.00 26.37 5.72 Aquaporin TIP2-3 Tonoplast intrinsic protein (TIP)

M. truncatulaG.max

377671372357482078268589179

US90 CATGATTTATTTTTGGAGGTCATTT 0.00 26.37 5.72 Hypothetical protein Uncharacterized protein DUF 3411


332432444332437635357506724356532124

US91 CATGCATACGCATTCAATATCTGTTAntisense

0.00 26.37 5.72 40S ribosomal protein S3a 40S ribosomal protein S3a-like

M. truncatulaG. max

377671460377671265358348321356535984

US92 CATGCATACTATTTATTACATTAAG 0.00 26.37 5.72 60S ribosomal protein L37a-like Ribosomal protein L43A family

G. maxBLASTP

377671337332435152356520741

US93 CATGCTATTTTATTTATTGATTTGA 0.00 26.37 5.72

US94 CATGGTCTTGCAGCTCGAGGCTTTC 0.00 26.37 5.72 Uncharacterized proteinCoa1 Superfamily. TIM21

G. maxBLASTP

332435570377674049356509095

US95 CATGTACTTCCTTTATACAAAGTTG 0.00 26.37 5.72

US96 CATGTATAAACTTTCATATTACAGA 0.00 26.37 5.72 Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit STT3ADolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3-like

M. truncatulaG.max

377679038332435653357444874356558901

US97 CATGTTACAATTATACCCTTTTCTT 0.00 26.37 5.72

US98 CATGTTTGAGTGATACCAACTGTGC 0.00 26.37 5.72 Defensin Protease inhibitor

M. truncatulaG.max

332444972358345085351723766

US99 CATGTTAGTGTTTTTTTCAGTGTTT 1.47 72.51 5.62

US100 CATGTTTCTCCTTTAATAATTTGTG 1.47 72.51 5.62 Glutathione S-transferase GST M. truncatula 377673367357505812357505814

US101 CATGATACATTATAGCTATAGACAA 3.67 171.38 5.54 Alkaline ceramidaseAlkaline ceramidase 3-like

M. truncatulaG. max

332434268357480450363806789

US102 CATGCATAACTGAGGAAACTAAAGA 1.47 65.92 5.49

US103 CATGAAGGTATTTTTACATTTATAT 0.73 32.96 5.49

US104 CATGCAAAGATAAAACTGATGGGCC 0.73 32.96 5.49

US105 CATGCAGTTATAGATTTATGATTTG 0.73 32.96 5.49

US106 CATGGAAATTCCTCTTAATGTTGAG 0.73 32.96 5.49

US107 CATGTAAGTGAGTTTCATTTCACTTAntisense

0.73 32.96 5.49 Beta-glucosidase G3 Cyanogenic beta-glucosidase (linamarase) Beta-glucosidase 12-like

M. truncatulaT. repensG. max

33244938515863490121952356541841

US108 CATGTGCAAGTAGTTTGAAAGGCTA 0.73 32.96 5.49

US109 CATGTTCAATTTTGATTCATTTATT 0.73 32.96 5.49

US110 CATGAATGGGAAAATGAAACTTGTA 0.00 19.78 5.31

US111 CATGATGGAATGTTTGAGGGTTTTG 0.00 19.78 5.31

US112 CATGATTATATCATATCATATTCTA 0.00 19.78 5.31

US113 CATGCTGCTGAGAGAAAGTTGTGTT 0.00 19.78 5.31

US114 CATGTATTTGCCTTTCAAACCCCCC 0.00 19.78 5.31

US115 CATGTGCTGCCGTTGTTTGCATAAA 0.00 19.78 5.31

US116 CATGTGTGGCCTTGTTGTTTTTCCC 0.00 19.78 5.31 PsENOD12B gene for early nodulin 12B 20712587508169083

US117 CATGTTAATGAATTTTCATACCACC 0.00 19.78 5.31

US118 CATGTTCGTTCTCTGAGTTTTCTTC 0.00 19.78 5.31

US119 CATGGTTTAGCGTTTTAAGTGAGCT 1.47 52.73 5.17 FGFR1 oncogene partnerUncharacterized mRNA

M. truncatulaG. max

377672183332431931357445054402794555

US120 CATGTAGCTAAGTGATTTACTCTTG 1.47 52.73 5.17

US121 CATGAAAGTAATATAATATACAAAT 0.73 26.37 5.17

US122 CATGAGAAAATCAATTAGGGCTGAG 0.73 26.37 5.17

US123 CATGATATCTGCCAATTATCTACTCAntisenseSee tag UR225

0.73 26.37 5.17 Unknown mRNAUncharacterizedRibosomal S10 Superfamily


332432747377672855351722900388513318

US124 CATGATTATTCAGTTATTGATGCAG 0.73 26.37 5.17

US125 CATGCGTTGAAAGCGTTGGATCGGC 0.73 26.37 5.17 Phosphate metabolism proteinHaloacid dehalogenase-like hydrolases

M. truncatulaBLASTP

332438304377671317332444999357444254

US126 CATGGTGAGCTTATCATCACATAAT 0.73 26.37 5.17

US127 CATGTACATATTATTTTTAAAGGCT 0.73 26.37 5.17

US128 CATGTACGCATTTACTTGCTTTCTT 0.73 26.37 5.17

US129 CATGTTGCATACTGTTATGGAAATG 0.73 26.37 5.17

US130 CATGTTTAAAGTGTTTGACGCACAG 0.73 26.37 5.17 Monosaccharide-sensing protein Monosaccharide-sensing protein 2-like

M. truncatulaG. max

377673072357467166356508503

US131 CATGTTTAGTAGGACTTTATTATCA 0.73 26.37 5.17

US132 CATGTGGAACTATATGTACTATCTT 34.53 1173.31 5.09 Luminal-binding protein 4-like G. max 377671830356513250

US133 CATGTACCCATATGAAATGACACAG 5.14 171.38 5.06

US134 CATGATTCCCAAACATATAAATCAAAntisense

3.67 118.65 5.01 Unknown mRNA CASP-like protein 7TIGR01569


332433255377673289388493015402743711

US135 CATGGTTGCAGGATTCAAGGTTCAG 1.47 46.14 4.97

US136 CATGAGATATAAGATGAATTCAAAT 3.67 112.06 4.93

US137 CATGAGTTTTGACTTGGTGATAAGA 2.94 85.69 4.87

US138 CATGAACACCCACATCTGTCCAGAA 1.47 39.55 4.75 Hypothetical protein Inactive poly [ADP-ribose] polymerase RCD1-like RCD1-SRO-TAF4 (RST) plant domain


377678886332432190357485538356496242

US139 CATGAGGATTAAAATGTTGAGATGT 1.47 39.55 4.75

US140 CATGCCGATAAAGTAGGAACCAAAG 1.47 39.55 4.75

US141 CATGCTGACCCTCATCCTGGAAATA 1.47 39.55 4.75 ABC transporter-like proteinUncharacterized proteinABC1 family


377683301357519622356509049

US142 CATGCTGAGTTTGAGATCCTCTTCT 1.47 39.55 4.75 Hypothetical protein Uncharacterized protein

M. truncatulaG. max

332437195377673868357460608356569925

US143 CATGTCTGCTAAATTGTAAAGGCTG 1.47 39.55 4.75

US144 CATGTTATGTTAGGTACGTATCGAA 1.47 39.55 4.75

US145 CATGCATTGAGAACATCACATTGATAntisense

2.20 59.32 4.75 Phenylalanine ammonia-lyase Putative phenylalanine ammonia lyase

M. truncatulaT. pratense

33243376735744038684468337

US146 CATGAAGCGCTTGAAACTATCTACA 0.73 19.78 4.75

US147 CATGAATAAAAGATGATTATTATTT 0.73 19.78 4.75

US148 CATGAATGTTAAGAGTGTTCCAGCC 0.73 19.78 4.75

US149 CATGAGGATAAAGCTTAGAGCATTT 0.73 19.78 4.75

US150 CATGATAGTGAAACTCACAATTTTT 0.73 19.78 4.75

US151 CATGATGGTCCAAAATTTAATTGAC 0.73 19.78 4.75

US152 CATGCAGAACCCAGCAAAAATGTTG 0.73 19.78 4.75 Activating signal cointegrator Activating signal cointegrator 1-like

M. truncatulaG. max

377675907357477562356562831

US153 CATGCCGGCGGATAAGAAAGCGAAG 0.73 19.78 4.75 GDP-fucose protein O-fucosyltransferaseDUF246 domain-containing protein

M. truncatulaG. max

377676207332430551356521786

US154 CATGCTGAAACAACAGAAGATGCAA 0.73 19.78 4.75 Pyruvate kinase Pyruvate kinase. cytosolic isozyme-like

M. truncatulaG. max

377676158332433474357475082356521617

US155 CATGCTGCTGATCCCAGCAGTTTTT 0.73 19.78 4.75

US156 CATGCTGCTGCCCCCCCCTTTTTTT 0.73 19.78 4.75

US157 CATGGTAGTATGAACATTGTGATTC 0.73 19.78 4.75 Structural maintenance of chromosomes protein 2-1-likeStructural maintenance of chromosomes (SMC) protein

G. maxBLASTP

332466953356548918

US158 CATGTAAACTATGAATAAGAGGTAG 0.73 19.78 4.75

US159 CATGTAGCTTATGATTGGAAATTAG 0.73 19.78 4.75

US160 CATGTATCATTATTGCAAACTATGT 0.73 19.78 4.75

US161 CATGTCTATCCATTCTTCAATTTAG 0.73 19.78 4.75

US162 CATGTGGATATGAAGTGTGATGAGA 0.73 19.78 4.75

US163 CATGTTAAAAATTTATGGATTTCCT 0.73 19.78 4.75

US164 CATGTTAACTATTCACTGAATACAA 0.73 19.78 4.75

US165 CATGTTGGTGTTTATAATAAAGGGT 0.73 19.78 4.75 Protein pns1? M. truncatula 332482174357508860

US166 CATGTGTCAGATTGTTATTATGTGT 4.41 112.06 4.67 Peroxidase PsPOX29Peroxidase

M.truncatula 62909962332429816357448430

US167 CATGTATGCTGTACAAGTAAAATGA 7.35 184.57 4.65 Unknown mRNAPutative RNA-binding protein ylmH-likeRNA-binding domain also found in stress proteins

M. truncatulaG.maxBLASTP

332448400217074321402794940

US168 CATGTATAGCTTTAATCTTAAAGGC 8.82 210.93 4.58 Small GTP-binding protein Ras-related protein RABB1b-likeRab GTPase family 2.


332435193377674230357496970356570242

US169 CATGGATAGATTAATGTGTTCATTC 2.20 52.73 4.58

US170 CATGGTTATGAGGTTAAACTTGCTTAntisense

2.20 52.73 4.58 3-ketoacyl-CoA synthase 3-ketoacyl-CoA synthase 21-like

M. truncatulaG. max.

377675015332433237357472606356536509

US171 CATGTAACGGTTTTATATGAACAAT 2.20 52.73 4.58 AP2-like ethylene-responsive transcription factor At1g16060-like G. max 332440842356522261

US172 CATGCCTTTGAGGCGTTCAAAATAG 3.67 85.69 4.54 Eukaryotic translation initiation factor 2 subunit alphaEukaryotic translation initiation factor 2 subunit alpha-like

M. truncatulaG.max

377674347332432710357461372356539998

US173 CATGACATCTTATTATGATGCTTGC 1.47 32.96 4.49 RNA-binding protein with multiple splicing Uncharacterized proteinRNA Recognition Motif Superfamily

M. truncatulaG. max

377674375357467714356526325

US174 CATGCAAAAGAGGTTAGAAAAAGTT 1.47 32.96 4.49

US175 CATGCAATCATTTGATGAATAAGAG 1.47 32.96 4.49

US176 CATGGCGTGCTATTTTGCAATCAAT 1.47 32.96 4.49

US177 CATGTGAGTGCTTTTTTTTCTTCTT 16.16 362.54 4.49

US178 CATGATTAATAAATTTGCAACCATC 2.94 65.92 4.49

US179 CATGGACGCGTTAGGGTTTTGGGGG 2.94 65.92 4.49 Frigida-like proteinUncharacterized protein

M. truncatulaG. max

377673340401710191356575850

US180 CATGTTTGTTTTCCACTTGACCAAC 5.14 112.06 4.45

US181 CATGAATATTTTGAAATGGATGTGA 2.20 46.14 4.39 Cytochrome b5 M. truncatula 377673139332435271357514460

US182 CATGAATTGACGGAACAAGCAAATGSee tag DS66, US194, UR8, UR241 and UR250

2.20 46.14 4.39 Putative glycine rich protein precursor (grp1 gene)Cold and drought-regulated protein CORA

M. truncatula 37767280311441539357493030

US183 CATGCGGGATACTGATATCTATCTT 2.20 46.14 4.39

US184 CATGTCTTTTCCAACCATTTGCTTG 19.10 395.50 4.37 Homeobox-leucine zipper protein ATHB-7 Homeobox-leucine zipper protein ATHB-7-like

M. truncatulaG.max

332454885357464078403043675

US185 CATGTTAATCAATTCTTTAATGACT 45.55 936.01 4.36

US186 CATGCTGCTGCCGCATCCCAGCAGT 14.69 296.62 4.34

US187 CATGAGAAGGAGTGGAAATTAGGAG 2.94 59.32 4.34 Mitochondrial inner membrane protein OXA1 Glycine max mitochondrial inner membrane protein OXA1-like

M. truncatulaG.max

377681704332446173357504210

US188 CATGCCTTCATAGGAGAGTGCGCAA 2.94 59.32 4.34 Pleiotropic drug resistance proteinPleiotropic drug resistance protein 1-like

M. truncatulaG. max

377674673357455074356555824

US189 CATGATTTGCTAAGAGCCAATTGTT 15.43 283.44 4.20 GTP-binding protein Ras-related protein Rab11B

M. truncatula 377683037303739358343343

US190 CATGAATCTCCATTGTGAAAAACAC 1.47 26.37 4.17

US191 CATGATAATCTTGAAGATTATGATG 1.47 26.37 4.17

US192 CATGATTAGATATTTGGATTTTGGT 1.47 26.37 4.17

US193 CATGATTCCTTTCTTCTAAGCAATT 1.47 26.37 4.17

US194 CATGGTGGTGTTTCCAACAATGAGGSee tags US182,DS66, UR8, UR241 and UR250

1.47 26.37 4.17 Glycine rich protein precursor (grp1 gene)??Cold and drought-regulated protein CORA??Glycine rich protein family

M. truncatulaBLASTP

332441505332445743332445373114415397357493052

US195 CATGTCTTAGTATTCATTTTTGTTT 1.47 26.37 4.17 LRR receptor-like kinase family proteinGlycine max probable inactive receptor kinaseLRR-RI Protein tyrosine kynase


332456426377683509357465600356509744

US196 CATGAATGTTGTAGTCTTGTTTGTC 2.20 39.55 4.17

US197 CATGCAATAAATACAGGACTTGTCT 2.20 39.55 4.17

US198 CATGTGCACTCAATATATATTAGTG 2.20 39.55 4.17

US199 CATGAAGTCATTTGTTAAATGATCT 4.41 72.51 4.041 Fold change was calculated as log2 (Normalized TAG copy number/ Normalized TAG copy number control), when this last value was 0.0 was substituted by 0.5.

Supplementary Table 7. Underrepresented deepSuperSAGE tags (DS) from pea ZP0104 leaves infected with Pseudomonas syringae pv. pisi race 6 (strain P123- susceptible response).

TAG sequence Normalized TAG copy

number control

Normalized TAG copy

number

Fold change1

Species Gene identification number (gi|)

DS1 CATGAATGTTATCAGATCCATTGAASee tag DS8

1771.28 0.00 -11.79 Chlorophyll a/b-binding protein (Cab9) geneChlorophyll a/b-binding protein

M. truncatula 169060332445676357496386

DS2 CATGTTTGTATGCACCTGAATGTTA 1717.65 0.00 -11.75

DS3 CATGAGAAACTATCTTCTACAGTCT 465.78 0.00 -9.86 Uncharacterized protein G. max 332450200356518053

DS4 CATGAGTGAAATTAAAATATTACTA 430.51 0.00 -9.75

DS5 CATGTTTTTTTTTAAAAAAAAAAAA 407.00 0.00 -9.67

DS6 CATGTGATGTGAATGAGGGGTTGGA 390.11 0.00 -9.61 Hypothetical proteinUncharacterized proteinRHDO Superfamily


377672658332431450357509872356504844

DS7 CATGAGGCACATTAGTCAAGAATAA 351.17 0.00 -9.46 Gibberellin 20-oxidase 18481452108427

DS8 CATGTAGGGTTGCATTTTTTCATTGSee tag DS1

291.66 0.00 -9.19 Chlorophyll a/b-binding protein gene?? 332447221222358326

DS9 CATGTAAGTGATATATATAGTACTA 282.11 0.00 -9.14 3-ketoacyl-CoA synthase3-ketoacyl-CoA synthase 6-like

M. truncatulaG. max

377673603332430649358346781356575545

DS10 CATGAATCAAGACGTGAGATATTGT 271.09 0.00 -9.08 Unknown mRNA Phosphatidylinositol-specific phospholipase C, X domain containing proteins found in plants

M. truncatulaBLASTP

377681319217072597

DS11 CATGTAATGTTAAACTTTTTTAGTT 267.42 0.00 -9.06 SOUL heme-binding family proteinHeme-binding protein 2-likeSOUL heme-binding protein


332434233388493349356498207

DS12 CATGAATGTTATCAAAAAAAAAAAA 224.07 0.00 -8.81

DS13 CATGTACTATTTAGGTCGTGTTAGA 221.13 0.00 -8.79 Signal peptide peptidase A (SppA) 36 kDa type proteinProtease 4-like

M. truncatulaG. max

332437173357450792356508466

DS14 CATGGAGCTTCTTTTTGCATTAGCT 215.26 0.00 -8.75 Unknown mRNAUncharacterizedRibosomal L13 Superfamily


377672252217071233210142926

DS15 CATGATGTTCTTACCTGTGCTGAGC 210.11 0.00 -8.72 Class1 chitinaseEndochitinase

M. truncatula 37051095332430157377671622357502782

DS16 CATGAGGAGCTATTCACTTTTTACT 202.03 0.00 -8.66 AB80 encoding major light-harvesting chlorophyll a/b-binding protein 332445549169052169054

DS17 CATGCAAAACCACCACCGTTCAAAA 199.83 0.00 -8.64 Photosystem II core complex proteins psbYPhotosystem II core complex proteins psbY

M. truncatulaG. max

332436309332445129377672067357463164356540202

DS18 CATGGTATTGTAGTAGGTACACCTG 196.16 0.00 -8.62 Uroporphyrinogen decarboxylaseUroporphyrinogen decarboxylase, chloroplastic-like

M. truncatulaG. max

377673951332430172357461510402794614

DS19 CATGAATGTTATCATATCAAAAAAA 177.05 0.00 -8.47

DS20 CATGTATTTTTAAATGTTAAGCAGA 177.05 0.00 -8.47 Homeobox protein Hox-C4 M. truncatula 332432160357446736

DS21 CATGAATGTTATCATAAAAAAAAAA 165.30 0.00 -8.37

DS22 CATGATTTATTGGAGTGGCAGGATA 164.56 0.00 -8.36 ADP,ATP carrier proteinADP,ATP carrier protein 1, mitochondrial-like

M. truncatulaG. max

377671858356525660357514852

DS23 CATGATTTGTTTAAACCAAGTAACA 164.56 0.00 -8.36 Lhcb3 gene for chlorophyll a/b-binding proteinChlorophyll a/b-binding protein

M. truncatula 14144806333243816020670357452426

DS24 CATGTTTATTTAAAAAATGTAGAAC 163.10 0.00 -8.35 Light induced-like proteinUncharacterized

M. truncatulaG. max

377674989332431903357447838351725182

DS25 CATGCAAGATTAATGTGATATCTTG 161.63 0.00 -8.34 Serine carboxypeptidase-like proteinSerine carboxypeptidase-like 27-like

M. truncatulaG. max

332437110357443344356533976

DS26 CATGTAAATTTAGATATAAGGGCTT 151.34 0.00 -8.24 Uncharacterized protein G. max 332430833356559178356529670

DS27 CATGTTACTTGGTCCATATTAGGTT 151.34 0.00 -8.24 RING-finger ubiquitin ligase E3 ubiquitin ligase BIG BROTHER-related-likeRING-finger


377675210217075117356575433

DS28 CATGGATGCTTTACTTTTAAAAAAA 149.14 0.00 -8.22

DS29 CATGTAAGATTGGTGATGAAGGATT 143.99 0.00 -8.17 F-box/LRR-repeat proteinF-box/LRR-repeat protein 14-like

M. truncatulaG. max

332436300357458868356526240

DS30 CATGCATATGAGTTTGTACCAAAGA 141.79 0.00 -8.15 Carboxyl-terminal-processing proteaseCarboxyl-terminal-processing protease-like

M. truncatulaG. max

332456342357519224356512565

DS31 CATGAAAATTTTGAAACATTGTTGT 139.59 0.00 -8.13 Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like

G. max 332436446356530081

DS32 CATGTTTTCTTTGTCTCTACCTAAG 138.85 0.00 -8.12

DS33 CATGGATAATAAAAGGGGAAATGTT 136.65 0.00 -8.09

DS34 CATGATTTTATGACATAATGGGAAG 134.44 0.00 -8.07 Uncharacterized Helicase sen1 ¿? M. truncatula 377681380357513936

DS35 CATGTAAAGTTGTCTAGTCTATGTA 132.24 0.00 -8.05

DS36 CATGTATGGTAGGTTGTATTATCAG 131.51 0.00 -8.04 Hydroxymethylbilane synthasePorphobilinogen deaminase

M. truncatula 313723332430192357474092

DS37 CATGATTTATGTTAATATTTATGAG 130.77 0.00 -8.03 Root phototropism proteinRoot phototropism protein 2-like

M. truncatulaG. max

377679556332434459357460536356570016

DS38 CATGGAATTTATTAAGGTCTTCAAA 127.83 0.00 -8.00 Syntaxin-52Syntaxin-51-like

M. truncatulaG. max

377672964332430842357459802356567067

DS39 CATGGTGCCGCTTCTGTCAGGCTAT 124.89 0.00 -7.96 5'-adenylylsulfate reductase 3, chloroplastic-like5'-Adenylylsulfate (APS) reductase subfamily

G. maxBLASTP

377672623332434359356555675

DS40 CATGTGTATATGGTAACACAAAATA 121.95 0.00 -7.93 Pyrophosphatase ppaXPhosphatase YfbT-like

M. truncatulaG. max

332431823357520438356513396

DS41 CATGTGTGTTGGGTGGAATTTACGA 120.49 0.00 -7.91 Unknown mRNAUncharacterized

M. truncatulaG. max

377673410332431104351727518217075323

DS42 CATGGAAGGTGATAGTCCTGCAATC 119.02 0.00 -7.90 Unknown mRNAMitochondrial outer membrane protein porinPorin 3 Superfamily.


332430331217073837356526889

DS43 CATGGTTACTAGCATTTGTTAAATA 116.81 0.00 -7.87 Omega-amidase NIT2Omega-amidase NIT2-like

M. truncatulaG. max

332430178357465810356514702

DS44 CATGCAAGACATTGGCGAAGAAGAT 115.34 0.00 -7.85 AUXIN SIGNALING F-BOXAUXIN SIGNALING F-BOX 3-like

M. truncatulaG. max

332434665377683207357508348356571614

DS45 CATGGATCTGATCTGATTGATACTA 113.87 0.00 -7.83

DS46 CATGGGGTTTATATGTGAGATATTT 113.14 0.00 -7.82 ADP-ribosylation factorADP-ribosylation factor 1-like

M. truncatulaG. max

332430338357479798358249125

DS47 CATGAGGCCTCTTAGCCACAACAAC 110.93 0.00 -7.79 UnknownUnknown

L. culinaris 377672382261232761268541692

DS48 CATGATCCAGCATTATAATTAATTG 108.00 0.00 -7.75 Hypothetical proteinUncharacterized

M. truncatulaG. max

332432202358344606402745652

DS49 CATGGTTCATATTTGCCTAGAAAGC 107.26 0.00 -7.74 Unknown mRNAUncharacterized protein

M. truncatulaG. max

377675529332447142388516550

DS50 CATGGATGTTTTCTTTTTTAAAAAA 103.59 0.00 -7.69

DS51 CATGGAATTTTGCATTTGGTTGTAA 99.91 0.00 -7.64

DS52 CATGCGATTCAGTCTCTGAGGCATA 99.18 0.00 -7.63 Chloroplast outer envelope protein 34Translocase of chloroplast M. truncatula

5101893293200357509072

DS53 CATGTACACAATTTGGTGTTTTGTT 98.45 0.00 -7.62

DS54 CATGTCCATCAAAGTGAACACCGTA 98.45 0.00 -7.62

DS55 CATGGATTTGGCAAAGTGAGCTATT 95.51 0.00 -7.58 Pre-mRNA branch site p14-like proteinPre-mRNA branch site p14-like protein-like

M. truncatulaG. max

377676069332431766357493882356501391

DS56 CATGCAAGTCAGCAGATTTACACCASee tag US65

90.36 0.00 -7.50 40S ribosomal protein S25-240S ribosomal protein S25-2-like

M. truncatulaG. max

332445414357473346356538746

DS57 CATGAATTATACGTACTAGTACACG 87.43 0.00 -7.45 O-acyltransferase WSD1O-acyltransferase WSD1-like

M. truncatulaG. max

332431878377675028356521456358343858

DS58 CATGCTGGAGCAAAGTTGGAAGGGC 87.43 0.00 -7.45 CBL-interacting serine/threonine-protein kinase 11-likeCBL-interacting protein kinases

G. maxBLASTP

332430197356566778388501773

DS59 CATGTCGTTGATCGATGTACAATTC 85.96 0.00 -7.43 Unknown mRNAPyrrolidone-carboxylate peptidase-like

M. truncatulaG. max

377677151332433155388506609403043534356524041

DS60 CATGCAAAATATGCTAGATGGATAA 85.22 0.00 -7.41

DS61 CATGCACAGGTTGATGGTTCAAAAA 85.22 0.00 -7.41 Type II chlorophyll a/b binding proteinChlorophyll a-b binding protein M. truncatula

332437456602358358346568

DS62 CATGAATTTTGGTTCAAAATGCACA 83.75 0.00 -7.39 ABC transporter B family member??ABC transporter B family member 26

M. truncatulaG. max

332448243357485676356497302

DS63 CATGCAGCCCCAAGCATTCAGTGAA 82.28 0.00 -7.36 Membrane-anchored ubiquitin-fold protein Membrane-anchored ubiquitin-fold protein 3-like

M. truncatulaG.max

377674414332434495357511158356505515

DS64 CATGATTGGAGCTTGGATAGTGTTT 80.81 0.00 -7.34 Hypothetical protein M. truncatula 332431904357518082

DS65 CATGTATGGACATTTTTATGATTAA 79.34 0.00 -7.31

DS66 CATGTGTAATATATCAAATATCACC 77.87 0.00 -7.28 Putative glycine rich protein precursorCold and drought-regulated protein CORA??

M. truncatula 90646300377672803332434153114415397357493030

DS67 CATGGCAGGATTGGAGCAGCAGAGT 77.14 0.00 -7.27 R2R3-MYB transcription factorMYB transcription factor MYB50

M. truncatulaG. max

332434078357482758351724602

DS68 CATGAAATAAATCAAGAATTTGCAG 76.41 0.00 -7.26 NADH-cytochrome b5 reductase-likeNADH-cytochrome b5 reductase-like

M. truncatulaG. max

332432659357477996402794696

DS69 CATGTCCTGACGCTATCTCGATTGT 75.67 0.00 -7.24 Hypothetical proteinUncharacterized proteinPlant-specific sub-family of Phospholipase A2


332435836357448612356577338

DS70 CATGACAGAGCCACAGATTTTGAAA 74.94 0.00 -7.23 NADH-ubiquinone oxidoreductase 10.5 kDa subunitNADH dehydrogenase 1 alpha subcomplex subunit 2-like

M. truncatulaG.max

377673435332433069357448964356498716

DS71 CATGGAAGATGGTTTGCTGGAAAGA 74.94 0.00 -7.23 Unknown mRNARNA-binding protein 39-like

M. truncatulaG. max

332446040217074841356536385

DS72 CATGTTCCATTTTGTGTTTCAAGTT 74.94 0.00 -7.23

DS73 CATGCATGCTTGTATTAAATAATTA 73.47 0.00 -7.20 Translation factor SUI1-like proteinTranslation factor SUI1 homolog 2-like

M. truncatulaG. max

332441326332431504357494518356527055

DS74 CATGCTGAAAGGGGAGTCAATCAGA 73.47 0.00 -7.20 Alcohol dehydrogenase 1MG20 alcohol dehydrogenase (ADH1)

T. repensL. japonicus

33243631421950356582741

DS75 CATGTAACATAGTGTAGTTTTTCAA 72.00 0.00 -7.17 Pentatricopeptide repeat-containing protein G. max 332432593356575209

DS76 CATGCCTGCCAAACCTAGTCAGAAC 71.26 0.00 -7.16 Primary amine oxidase-like G. max 332430713356566001

DS77 CATGGTAGAGTTTAAGTGTTGTATA 69.06 0.00 -7.11 Unknown mRNAStem-specific protein TSJT1-likeGlutamine amidotransferases class-II Superfamily


332437138377672097388519240403043698

DS78 CATGTCCTTGTTTTTTTGTTTTACA 69.06 0.00 -7.11

DS79 CATGAGCCACGGAGATCCAATCGCA 67.59 0.00 -7.08 Agenet domain containing proteinAgenet domain, Tudor-like domain present in plant sequences

M. truncatulaBLASTP

377681473332437655357482072

DS80 CATGTGTTTTGTTGAATTGAATTGT 66.85 0.00 -7.06 Unknown mRNAUncharacterized proteinDUF 525


332433156388490689356562723

DS81 CATGTTGATACTAAGCTTCCAAATC 66.85 0.00 -7.06 gpa1 gene for glyceraldehyde-3-phosphate dehydrogenaseGlyceraldehyde-3-phosphate dehydrogenase A

M. truncatula 1215820728357508528

DS82 CATGAATTTTTTCCAATAAAAAAAA 66.12 0.00 -7.05

DS83 CATGCTTTGTGCTTTAGTCCTAACA 63.18 0.00 -6.98 Guanine nucleotide-binding protein subunit beta-likeGuanine nucleotide-binding protein subunit beta-like protein-like

M. truncatulaG. max

377671806332445027357521564402794593

DS84 CATGGTTTTGCTAGACGTGTGGTGG 61.71 0.00 -6.95 Apospory-associated proteinputative glucose-6-phosphate 1-epimerase-likeD-hexose-6-phosphate epimerase-like


332430615377675044357483504356496742

DS85 CATGCAATGAACATCAGAAGGAATT 59.51 0.00 -6.90 1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose 5-phosphate reductoisomerase

M. truncatulaBLASTP

377674233332430760217073573357477354

DS86 CATGTACTCAACAATATATTATGTA 58.77 0.00 -6.88 Flavoprotein wrbAFlavoprotein wrbA-like

M. truncatulaG.max

377680363332436995357490640356553061

DS87 CATGCCTTGGTTGCAGGGATCAAGA 58.04 0.00 -6.86 60S ribosomal protein L2760S ribosomal protein L27-like

M. truncatulaG. max

377671642332436896357445372356556156

DS88 CATGCTTCTTAAGGTGAACTTTGGT 58.04 0.00 -6.86 Nuclear transcription factor Y subunit C-9Nuclear transcription factor Y subunit C-9-like

M. truncatulaG. max

377680485332432699357441612356504055

DS89 CATGTAATTCAATATCAAATACATC 56.57 0.00 -6.82 Beta-glucosidase 18-like G. max 377677104332439716356546882

DS90 CATGTTCTTGCAAAGCTTGTTGAAG 55.10 0.00 -6.78 B3 domain-containing protein? G. max 332480096356555033

DS91 CATGCAATTTCTTTACTTATAAGAA 52.90 0.00 -6.73 Uridine-cytidine kinaseUridine kinase or uridine-cytidine kinase

M. truncatulaBLASTP

332436104377677663357460286

DS92 CATGAGGCTTTGGTTTGTATATTAT 52.16 0.00 -6.70

DS93 CATGGTGCATATTCCACTGGAATGA 52.16 0.00 -6.70 Polyamine oxidaseProbable polyamine oxidase 2

M. truncatulaG. max

332449088357494058356567481

DS94 CATGGTGGATGATGAAAGAAGTAAT 52.16 0.00 -6.70 Nodulin MtN21/EamA-like transporter family protein Auxin-induced protein 5NG4-likeNodulin MtN21 family

G. maxBLASTP

75860385332429921377672343403043672332437526

DS95 CATGGATGAAAAAAAAAAAAAAAAA 663.40 6.59 -6.65

DS96 CATGGCTTTGGTAGATGAGAGAATG 591.41 6.59 -6.49 Unknown mRNAUncharacterizedPhotosystem I reaction center subunit V (PsaG); Provisional


377674732332445502217071581402767167

DS97 CATGAAATTTGAGGGCAAAAGAGAA 1954.21 26.37 -6.21 Chlorophyll a-b binding protein M. truncatula 377671975357468736

DS98 CATGCTTGGAATTTGAGTTGGAGAA 2768.95 39.55 -6.13 Ribulose 1,5 bisphosphate carboxylase 20856

DS99 CATGAAGGCTTTCGAAGACCTAAGG 386.43 6.59 -5.87 Protein CHUP1Protein CHUP1, chloroplastic-like

M. truncatulaG. max

332431946357488242356502486

DS100 CATGCTGGGCTTGGTATGGTATATA 697.20 13.18 -5.72 MLO-like proteinMLO-like protein 1-like

M. truncatulaG. max

332431255377672217357467572356507057

DS101 CATGCACAAACATTGTAATCAAAGA 346.03 6.59 -5.71 NAD(P)H-quinone oxidoreductase subunit NNAD(P)H-quinone oxidoreductase subunit N-like

M. truncatulaG. max

332431249357460592402794327

DS102 CATGACTGGCATAGGATAATATATG 283.58 6.59 -5.43 Long-chain-fatty-acid-CoA ligaseLong-chain-fatty-acid-CoA ligase

M. truncatulaG. max

377675377357469952356577565

DS103 CATGATGTATAGAAGAATAAATCTG 278.44 6.59 -5.40 Uncharacterized proteinACT domain-containing protein

G. maxBLASTP

332431483356509343

DS104 CATGTTTAAAAAAAAAAAAAAAAAA 1612.59 39.55 -5.35

DS105 CATGTTTTGGGAAAAAAAAAAAAAA 248.32 6.59 -5.24

DS106 CATGATTCGACGATTCTGCTTCAAA 222.60 6.59 -5.08 Phosphatidylinositol N-acetylglucosaminyltransferase subunit A M. truncatula 332439085358348006

DS107 CATGCACGATATTCATATTAATAAA 1553.08 46.14 -5.07 Xyloglucan endotransglucosylase/hydrolaseProbable xyloglucan endotransglucosylase/hydrolase protein 23-like

M. truncatulaG. max

377672460332431485357449736363808223

DS108 CATGGATTGGAAGAAGGGTGTGACA 2040.90 65.92 -4.95 Unknown mRNAPhotosystem I reaction center subunit III; Provisional

M. truncatulaBLASTP

377671244388507291

DS109 CATGGACTATCTATAAAGGTGGCTC 176.32 6.59 -4.74 Thioredoxin F isoformThioredoxin

M. truncatula 20906332429876357507806

DS110 CATGGTGTTTGTTGTTAACAACTAT 156.48 6.59 -4.57 Ras-like proteinRas-like protein

M.truncatulaBLASTP

377675071332432983357510454

DS111 CATGATCTACCAATGAGAATTGCAA 146.93 6.59 -4.48

DS112 CATGCCATTGCCACTAGGTTTCAAG 144.73 6.59 -4.46 Aconitate hydrataseAconitate hydratase, cytoplasmic-like

M. truncatulaG. max

332435252357453422356550019

DS113 CATGCATCAACAGATAATAATATAA 430.51 19.78 -4.44 aarF domain-containing protein kinaseuncharacterized proteinaarF multidomain protein kinase


332436060357469818356495916

DS114 CATGGTTTGTCAAGGATGTAAATAT 142.53 6.59 -4.43 Hypothetical proteinUncharacterizedDUF 872


332435614357447072402744992

DS115 CATGTGATCAATGTTCCAATATTAA 279.17 13.18 -4.40 Unknown mRNABidirectional sugar transporter SWEET13-likeSugar efflux transporter for intercellular exchange


332433346377671833388494189356527764

DS116 CATGATCTGGCAATCAGCAAGTTTG 139.59 6.59 -4.40 THO complex subunitTHO complex subunit 4-like

M. truncatulaG. max

332446754357460874356569695

DS117 CATGTGCTGGCAAATGCATTATTAG 139.59 6.59 -4.40 Ftsh-like protease (ftsh11 gene)Zinc metalloprotease FTSH 11FtsH family

P.sativumG. maxBLASTP

50892958332430415356551133

DS118 CATGGTTTTTTCTGCTTGAAAAAAA 134.44 6.59 -4.35

DS119 CATGCATCTTTACAACTTCAATAAA 247.58 13.18 -4.23 AldolasePlastidic aldolase

T. pratense 33243906437767115316903838096040

DS120 CATGGAATTCTTTCTTTTTTTAAAA 247.58 13.18 -4.23

DS121 CATGGCAGATATGACTGAAGATCAA 121.22 6.59 -4.20 Phosphatidylinositol kinase family-like proteinProbable phosphatidylinositol 4-kinase type 2-beta

M. truncatulaG. max

332438253357516872356499945

DS122 CATGTGGTTTTGTAATCTATTTTAA 119.02 6.59 -4.17 Lactoylglutathione lyaseLactoylglutathione lyase-like

M. truncatulaG. max

377671666357480322356520070

DS123 CATGGACTTCTAATCCTCTCATTTT 231.42 13.18 -4.13 L-ascorbate peroxidase, cytosolic Cytosolic ascorbate peroxidase

M.truncatula 20647357472450

DS124 CATGCTTCTGTGCTAAAGAGAGAGA 113.87 6.59 -4.11 Phosphoenolpyruvate-carboxylasePhosphoenolpyruvate carboxylase

V .fabaG. max

3324302183776731853649777351725378

DS125 CATGTTGTTATTGATAGTAAAATAT 113.14 6.59 -4.10 Cytochrome P450 monooxygenaseCytochrome P450 89A2-like

M. truncatulaG. max

332438461377674063357446110356576122

DS126 CATGGGAGAAAGTTGAAGACAAATA 221.87 13.18 -4.07 Thylakoid membrane phosphoprotein 14 kDaThylakoid membrane phosphoprotein 14 kDa

M. truncatulaG. max

377672720357512646356559598

DS127 CATGATTTGTACATCAGGTATCTTA 110.20 6.59 -4.06 Type I inositol-1,4,5-trisphosphate 5-phosphataseType I inositol-1,4,5-trisphosphate 5-phosphatase 1-like

M. truncatulaG. max

332457423357443448356576090

DS128 CATGCATGTCATCATTGAGACAAACSee tag UR269

109.47 6.59 -4.05 Magnesium-protoporphyrin IX monomethyl esterMagnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase

377673156332445045357509134356504618

DS129 CATGTTTTAGTTCAAAAAAAAAAAA 212.32 13.18 -4.01

1 Fold change was calculated as -log2 (Normalized TAG copy number control/ Normalized TAG copy number), when this last value was 0.0 was substituted by 0.5.

static-content.springer.com10.1007... · Web viewUR42 CATGATTTCAAACACTGCAAATAAA 0.00 176.48 8.46 Acyl-CoA dehydrogenase family member 10-like Acyl-CoA dehydrogenase G. max BLASTP

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