Integrating Bioinformatics into Information and Library Science Education Bradley Hemminger, Anne Bauers School of Information and Library Science, University of North Carolina, Chapel Hill http://ils.unc.edu/bioinfo Examples (Pittsburgh , UNC-CH) Complete Details (Word doc) School Summary
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Integrating Bioinformatics into
Information and Library Science Education
Bradley Hemminger, Anne BauersSchool of Information and Library Science,
University of North Carolina, Chapel Hill
http://ils.unc.edu/bioinfo
Examples (Pittsburgh, UNC-CH) Complete Details (Word doc)School Summary School Details
Challenges to Incorporating Bioinformatics
• Multidisciplinary field• Primary field is usually not ILS
– (usually biological sciences or computer science based)
– ILS may not even be initially considered part of a biologically based bioinformatics program.
Host Department Approaches• Single department concentration. (Rice,
George Mason, Arizona St)• Interdisciplinary program that crosses
departmental boundaries; utilize courses from each participating dept. (UNC-CH, CMU, Iowa State, UCSD)
• Standalone program as Center or Institute (Boston Univ Bioinformatics, Pittsburgh CBMI)
Degrees and Certificates
• A single department usually grants their degree (for example Master CS with concentration in bioinformatics).
• The interdisciplinary approach usually grants degrees from the students home department, and then a specialization in bioinformatics, earned by meeting the additional requirements of the bioinformatics program.
• Center & institute programs generally grants a degree from that program (bioinformatics).
Program Descriptions
• Integrated ILS schools, detailed examples (Pittsburgh, UNC-CH)
• Search Methodology• School Summary (26 national schools)• School Details• Complete Details (Word Document)
Search Criteria
• Degree-granting program at a college or university• Offering a focus, concentration, or degree in
bioinformatics• Preference for programs offering graduate degrees• Focus on scientific, bioinformatics-specific
programs– Less interest in medicine or engineering focused
programs– Less interest in strict computational biology programs
• Other References and Searches• NIH list of bioinformatics graduate programs• University of Texas list of bioinformatics graduate
programs• Peterson’s Graduate Schools and Programs search
(course of study: bioinformatics)
ILS Programs: University of Pittsburgh• Program: University of Pittsburgh• Degree: MS, PhD, MS or PhD certificate, and postdoctoral
fellowships • Host Department: Center for Biomedical Informatics (CBMI);
School of Information Studies (SIS) is strongly affiliated with the program.
• Program Entrance Requirements: Summarize background in medicine and computer science; admissions committee will determine if prerequisites are required.
• Program Completion Requirements: MS requires 44 credits and Research Project/Thesis. PhD requires 71 credits, comprehensive exam, and dissertation.
ILS Programs: UNC-Chapel Hill• Program: University of North Carolina – Chapel Hill• Degree: PhD certificate of specialization• Host Department: Twenty-two participating departments
including the School of Information and Library Science; hosted by Genome Sciences Center.
• Program Entrance Requirements: Formal coursework in computer science including programming, algorithms and data structures; biochemistry, cellular biology, or genetics; and statistics.
• Program Completion Requirements: Core curriculum, plus six additional courses; successful completion of examinations.
Informatics Programs – Boston University• Program: Boston University (cooperative with
Northeastern)• Core Courses:
o GRS CH525: Physical biochemistry o GRS BI 552 Molecular Biology I o ENG BE561: Protein and DNA Sequence Analysis o ENG BE768: Biological Database Systems o ENG BE777: Computational Genomics o LAW JD933: Biotechnology Law and Ethics o GRS BF 821: Bioinformatics Graduate Seminar
o INFO I501 Introduction to Informatics (3 cr.) o INFO I502 Information Management (3 cr.) AND choose one from among the following: o BIOL L519 Bioinformatics: Theory and Application (3 cr.) o BIOL L529 Bioinformatics in Molecular Biology and
Genetics: Practical Applications (4 cr.) o INFO I531 Seminar in Bioinformatics (1-3 cr.) o INFO I552 Independent Study in Bioinformatics (1-3 cr.)
Informatics Programs - Northeastern• Program: Northeastern University (cooperative with
Boston University)• Host Department: Bioinformatics• Program Entrance Requirements: Applicants to the MS
Program must have earned a baccalaureate degree in a biological science, chemistry, computer science, pharmacy, engineering, nursing, or other related discipline from an accredited college or university.
• Program Completion Requirements: All fundamental & core courses, at least one elective, industrial internship
Informatics Programs - Northeastern• Program: Northeastern University (cooperative with Boston University)• Fundamental Courses:
o BIO3564 General Biochemistry 4QH o BIO3565 Molecular Biology 4QH o MTH3580 Statistics for Bioinformatics 4QH o COM3113 Fundamentals of Programming 4QH
• Core Courses:o BIO3566 Cellular Biochemistry 4QH o COM3301 Database Systems 4QH o COM3150 Algorithms and Data Structures 4QH o BIO3580 Protein and DNA Sequence Analysis 5QHo PCL3101 Concepts in Pharmacology 2QH o BIO3581 Bioinformatics Seminar (this course should be taken 2 times) 2QH
Mathematics• Program Entrance Requirements: variable• Program Completion Requirements:
Informatics Programs – University of the Sciences
• Program: University of the Sciences in Philadelphia• Degree: BS, MS• Host Department: Bioinformatics• Program Entrance Requirements: BS or BA in a life
science, Computer Science, or Chemistry• Program Completion Requirements: Required courses,
electives, and a two-semester independent project.
Informatics Programs – University of the Sciences
• Program: University of the Sciences in Philadelphia• Courses:
o BS 764 Biotechnology I 2 credits o BS 765 Biotechnology Laboratory 2 credits o BI 780 Advanced Systems Analysis and Design for
Bioinformatics 3 credits o BI 785 Advanced Algorithms for Bioinformatics 3 credits o BI 898 Graduate Seminar o BI 790 Master's Project in Bioinformatics o BI 450 Bioinformatics I (Genomics) 3 credits o BI 451 Bioinformatics II (Methods and Applications) 3 credits
• Program: University of Washington• Courses: Basic Core
MEDED 530 - Medical Informatics MEDED 531 - Computing Concepts for Medical Informatics MEDED 532 - Computing Concepts for Medical Informatics II MEDED 598/558 - Integrated Systems: Technical and
Sociopolitical Dimensions Two of the following three courses:MEDED 534 - Biology for Informaticists MEDED 535 - Clinical Topics for Informaticists EPI/HSERV 503 - Public Health Informatics and Surveillance
Design and Analysis of Algorithms and Data Structures (e.g., CS 250, or CS201), Networks (e.g., CS 283)
• Program Completion Requirements: MS requires 27 credit hours and a thesis. PhD concentration requires core courses, plus at least 2 elective courses and a reading list on 3 areas of concentration.
o All students will take five core Biomedical Informatics courses (Foundations of Biomedical Informatics and Evidence-Based Medicine, Medical Decision-Support Systems and Machine Learning, Health Care Organization and Management, Bioinformatics for Molecular Biology, Clinical Information Systems). Those who are pursuing an M.S. degree will not be required to take the four associated laboratories, while those who pursue a Ph.D. must do so.
o All students will take core courses in the remaining three areas (3 courses for the methods area, 3 for the biomedicine area, and 3 for the informatics area).
Medical College of Wisconsin Bioinformatics graduate program
MS Departments included: Mathematics, Statistics and Computer Science; Electrical and Computer Engineering; Biology; and Biomedical Engineering at Marquette. Bioinformatics research at the Medical College of Wisconsin.
Other Bioinformatics Programs
Program Degree Host Dept.NC State statistical genetics & bioinformatics
MS, PhD
Program in Genomic Science
Northern Illinois University
MS special-ization
Administered by the Dept. of Biological Sciences
U Penn BS,MS, PhD
Biology, Computer Science, Mathematics
Renneselear bioinformatics and molecular biology
BS, MS, PhD
Rensselaer-Wadsworth Center for Bioinformatics (CB), Biology
Other Bioinformatics Programs Program Degree Host Dept.
Rice University MS Concen-tration
Computer Science
Stanford bioinformatics certificate program
Certificate program only
Stanford Center for Professional Development
University of California, Irvine
MS, PhD concen-tration
Information and Computer Science
Other Bioinformatics Programs Program Degree Host Dept.
UCLA BS, MS, PhD
Math / Statistics; Computer Science; Biological Sciences