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Integrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt
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Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Mar 27, 2020

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Page 1: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated QualitySurvival Product

Stata UK Meeting12th September

Piers Gaunt

Page 2: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Cancer TrialsI Generally measure Quality of Life (repeatedly

over time) and Survival DataI Need to combine both these measures

together appropriately to understandimpact of treatments/interventions

I Derive Quality-Adjusted Survival data,particularly important in EconomicEvaluations

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Page 3: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Integrated Quality-Survival ProductL J Billingham and K R Abrams

Simultaneous analysis of quality of lifeand survival data

Stat Methods Med Res 2002; 11: 25-48

Simple methodology to combine longitudinal QoLdata with survival data at the group level.

QALY (x) =

∫ x

o

Q(t)S(t)dt (1)

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Page 4: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Example Summary QoL Data

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Page 5: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Survival Data

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Page 6: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Event Times

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Page 7: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

QoL Data

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Page 8: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Quality-Survival Product

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Page 9: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Integrated Quality Survival ProductI Stata Program called stiqsp.

I Data in long format and stsetI Compulsory options

I Requires specification of Patient Identifier variable, QoLvariable, Time QoL measured variable

I ’Optional’ optionsI by - e.g. treatmentI cutoff - time durationI connection methodI Also specify 3 ’outfiles’ for location of data, for storing

results, bootstraps and graphical inputsI bootstrap reps, confidence intervalI graphical options

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Page 10: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

. stiqsp, id(ID) qol(QOL) tqol(tQOL) reps(100) ///

> outfile1(test1) outfile2(test2) outfile3(test3) cutoff(100)

Results QAL Time Estimate

QALD(100) 45.62036

QALM(3.30) 1.498821

QALY(0.30) .1249017

Bootstrap replications: (100)

1 2 3 4 5

.................................................. 50

.................................................. 100

Bootstrap results Mean [95% Conf. Interval]

30.90746 -1.900864 63.71578

1.01544 -.0624514 2.093332

.08462 -.0052043 .1744443

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Page 11: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Treatment 1 QoL

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Page 12: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Treatment 2 QoL

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Page 13: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

. stiqsp, id(ID) qol(QOL) tqol(tQOL) by(TRTID) reps(50) ///> outfile1(test1) outfile2(test2) outfile3(test3) cutoff(100)

Results QAL Time Estimate

Treatment 1 (good) QALD(100) 75.81667QALM(3.30) 2.490897QALY(0.30) .2075747

Treatment 2 (poor) QALD(100) 18.83QALM(3.30) .6186448QALY(0.30) .0515537

Bootstrap replications: Treatment 1 (good) (50)1 2 3 4 5

.................................................. 50Bootstrap replications: Treatment 2 (poor) (50)

1 2 3 4 5.................................................. 50

Bootstrap results Mean [95% Conf. Interval]

Treatment 1 (good) 71.37293 41.31368 101.43222.344901 1.357328 3.332474.1954084 .1131107 .2777062

Treatment 2 (poor) 4.202133 .1609812 8.243286.1380578 .0052889 .2708266.0115048 .0004407 .0225689

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Page 14: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Survival Data by Treatment

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Page 15: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

QoL Data by Treatment

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Page 16: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Quality-Survival Product by Treatment

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Page 17: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Lung Cancer example

I 1363 patients (1236 deaths)I All patients required to participate in the QoL

studyI QoL measured frequently throughout treatment

(every cycle) and End of Treatment.I Also measured on follow up at 1 month intervals.I Long format data.

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Page 18: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Lung Cancer example. stiqsp, id(TNO) qol(UK_TTO) tqol(tQOLForm) by(TRT) reps(100) cutoff(365) ///

> prodgraphopts(leg(row(1))) ///> qolgraphopts(leg(row(1))) ///> survgraphopts(leg(row(1))) ///> outfile1(LCdata1) outfile2(LCdata2) outfile3(LCdata3)

Results QAL Time Estimate

Chemo 1 QALD(365) 179.0527QALM(12.00) 5.882634QALY(1.00) .4902195

Chemo 2 QALD(365) 162.8502QALM(12.00) 5.350315QALY(1.00) .4458596

Chemo 3 QALD(365) 179.3569QALM(12.00) 5.892629QALY(1.00) .4910524

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Page 19: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Bootstrap replications: Chemo 1 (100)1 2 3 4 5

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Bootstrap replications: Chemo 2 (100)1 2 3 4 5

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Bootstrap replications: Chemo 3 (100)1 2 3 4 5

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Bootstrap results Mean [95% Conf. Interval]

Chemo 1 197.4722 188.8076 204.80926.487795 6.203125 6.728844.5406495 .5169271 .560737

Chemo 2 167.4837 79.4655 231.50755.502544 2.610776 7.605997.4585453 .2175647 .6338331

Chemo 3 208.8921 168.0427 258.40516.862984 5.520911 8.489694.5719153 .4600759 .7074745

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Page 20: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Survival Data by Treatment

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Page 21: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Quality of Life Data by Treatment

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Page 22: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Quality-Survival Product by Treatment

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Page 23: Integrated Quality Survival Product - StataIntegrated Quality Survival Product Stata UK Meeting 12th September Piers Gaunt. ... results, bootstraps and graphical inputs I bootstrap

Integrated Quality Survival Product

Introduction Data Results Future

Future Work

I Optimise (speed) and validate.I Help file and Stata Journal submissionI Parametric approachesI Provide more options and flexibility based on

feedback.

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