DataCite workshop at BL April 2011

• 1. G. A. Thorisson, University of Leicester DOIs for genetic research dataidentifying datasets and data contributors Gudmundur Mummi Thorisson Twitter: @gthorisson Department of Genetics, University of Leicester ORCID - http://www.orcid.org GEN2PHEN - http://www.gen2phen.org-- Outline -- Cafe RouGE - central clearinghouse for genetic variation data ORCID - tackling the contributor identification challengeThis work can be freely copied, redistributed and adapted, as long as proper attribution is given DataCite workshop 4 April 20111Monday, 4 April 2011

2. G. A. Thorisson, University of Leicester DataCite workshop 4 April 2011 2Monday, 4 April 2011 3. G. A. Thorisson, University of Leicester Cafe RouGE - Caf for Routine Genetic data Exchange 1. Diagnostic2. Central 3. End-users (e.g. laboratoriesclearinghouseLSDB curators) Publish dataRetrieve Atom feeds Submi&ng muta,ons from diagnos,c labs using Caf RouGE enabled so http://www.nature.com/nbt/journal/v27/n11/full/nbt1109-984b.html Data publication:G. A. Thorisson. 4x variants in BRCA2 gene. Published online via Cafe RouGE. 21January (2011) doi:10.1255/caferouge.BRCA2-2352354=> http://api.caferouge.org/atomserver/v1/caferouge/mutations/2352354 DataCite workshop 4 April 2011 4Monday, 4 April 2011 5. G. A. Thorisson, University of LeicesterData shared with diverse 3rd par6es and data usage/cita6on tracked via DOI Submission from diag. labDOI assigned to incoming data upload Cafe RouGE Depot dbSNP (coding)UniProt PhenCodeAlready stable IDs so no DOI assignedAAribu6on given to data submiAersvia ORCID unique iden6er Metadata describing varia6on data published elsewhere DataCite workshop 4 April 2011Monday, 4 April 2011 http:// 6. G. A. Thorisson, University of LeicesterData shared with diverse 3rd par6es and data usage/cita6on tracked via DOI Submission from diag. labDOI assigned to incoming data upload Cafe RouGE Depot dbSNP (coding)UniProt PhenCodeAlready stable IDs so no DOI assignedAAribu6on given to data submiAersvia ORCID unique iden6er Metadata describing varia6on data published elsewhere DataCite workshop 4 April 2011Monday, 4 April 2011 http:// 7. G. A. Thorisson, University of Leicester The ORCID initiative - tackling contributoridentication challenges ? ORCID ORCID ID: B-1242-2010 F67572010 G. Thorisson, Univ. Leicester G. A. Thorisson, Univ. Leicester G. A. Thorisson, Cold Spring Harbor Lab. ORCID ID: G-1442-2009 J. Smith, Univ. North Pole ORCID ID: D-2400-2010 J. Smith, Luthor CorporationGlobal registry of disambiguated IDs for contributors:i) UI for researchers to manage & use their ORCID IDii) facilitate linking content creators with their work (attribution links)iii) interact with other systems (publishers, digital libraries, universities etc) DataCite workshop 4 April 2011 6Monday, 4 April 2011 8. G. A. Thorisson, University of Leicester Key use case: submitting manuscript to journalAttribution statement deposited into ORCID: A-883-2010 10.4259/psycho-review.gbilder2010.Foobar DataCite workshop 4 April 2011Monday, 4 April 2011 9. G. A. Thorisson, University of Leicester DataCite workshop 4 April 20118Monday, 4 April 2011 10. G. A. Thorisson, University of Leicester tio ns a ni za rgOrgid .o 2 0 0 .o rc>w w :/ /w ht tp DataCite workshop 4 April 20118Monday, 4 April 2011 11. G. A. Thorisson, University of Leicester Attributing other types of published work G. Thorisson, Univ. [email protected] ORCID ID: A-883-2010 Thorisson, G. (A-883-2010), Bilder, G.W. (C-035-2009) and Fenner, M. (A-101-2010).Icelandic 9th century viking bowl. Psychoceramics Archive. Sep 2 2010.doi:10.4259/psycho.5gtpq-thorisson DataCite workshop 4 April 2011 9Monday, 4 April 2011 12. G. A. Thorisson, University of Leicester Attributing other types of published work G. Thorisson, Univ. [email protected] ORCID ID: A-883-2010 Thorisson, G. (A-883-2010), Bilder, G.W. (C-035-2009) and Fenner, M. (A-101-2010).Icelandic 9th century viking bowl. Psychoceramics Archive. Sep 2 2010.doi:10.4259/psycho.5gtpq-thorisson A-883-2010 10.4259/psycho-image5gtpq-thorisson C-035-2009 10.4259/psycho-image5gtpq-thorisson A-101-2010 10.4259/psycho-image5gtpq-thorisson DataCite workshop 4 April 2011 9Monday, 4 April 2011 13. G. A. Thorisson, University of Leicester Some DOI issues for discussion Granularity & versioning citing datasets vs citing collections of datasets (including databases) organization - datasets within databases, aggregation databases =~ journals, BUT changing resources? DOI identies a work which may be a new version of a previous work When is it appropriate to assign DOIs? original datasets published via the online repository derived datasets resulting from analysis of primary data republished datasets acquired from elsewhere? Identier structure: desire for branding vs opacity (10.163/caferouge.325fff5) Contributor recognition: ORCID IDs for data creators / contributors ORCID will support datasets registered via DataCite Early adopter outreach - summer/autumn 2011 DataCite metadata schema: where do contributor IDs t in? (Creator eld) DataCite workshop 4 April 201110Monday, 4 April 2011 14. G. A. Thorisson, University of Leicester Coming autumn 2011, to a venue near you!Intl workshop on researcher identity Co-organized by CSC (Finland IT Centre for Science) Provisional title: Identity in research infrastructure andscientic communication" - IRISC Location: Helsinki Dates: September 12-13 DataCite workshop 4 April 201111Monday, 4 April 2011 15. G. A. Thorisson, University of Leicester Acknowledgements GEN2PHEN ConsortiumThis work has received funding fromthe European Communitys Seventh http://www.gen2phen.org/about-gen2phen/partnersFramework Programme(FP7/2007-2013)under grant agreement number200754 - the GEN2PHEN project.Anthony J. Brookes Bioinformatics GroupContact me! Gudmundur Mummi Thorisson | http://friendfeed.com/mummit http://www.linkedin.com/in/mummi http://www.twitter.com/gthorisson DataCite workshop 4 April 2011 12Monday, 4 April 2011